RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6472
         (72 letters)



>d2eiaa2 a.73.1.1 (A:17-147) EIAV capsid protein p26 {Equine
          infectious anemia virus [TaxId: 11665]}
          Length = 131

 Score = 29.4 bits (66), Expect = 0.020
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 11 LESRINEEARRLDRLHPLDA 30
          L   I++ A   D  HPL  
Sbjct: 54 LLDAIDKIADDWDNRHPLPN 73


>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human
          immunodeficiency virus type 1 [TaxId: 11676]}
          Length = 145

 Score = 28.2 bits (63), Expect = 0.053
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 11 LESRINEEARRLDRLHPLDA 30
          L+  INEEA   DRLHP+ A
Sbjct: 69 LKETINEEAAEWDRLHPVHA 88


>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 456

 Score = 22.1 bits (45), Expect = 9.1
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 39 HDLRQAEENINTLFSDVQTLREGRYPQAS 67
           DLR A  N+    +  +  R   +P+  
Sbjct: 61 RDLRVAALNVEAFRAQYRIQRADLFPRIG 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.378 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 265,055
Number of extensions: 9958
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 14
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)