BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6473
(61 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 332 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 387
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 306 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 361
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 305 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 360
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 305 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 360
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 331 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 386
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 331 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 386
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 331 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 386
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 332 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 387
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 329 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 384
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 341 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 396
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 328 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 383
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 2 EFKLQTLFISETIMQLNEED--EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
E KL + ++ L D EAGS+ +GG + TQ LE A+ L Q++LR
Sbjct: 341 EEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKSTQALEYCAELLGLDQDDLR 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.126 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,399,275
Number of Sequences: 62578
Number of extensions: 36124
Number of successful extensions: 68
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 12
length of query: 61
length of database: 14,973,337
effective HSP length: 32
effective length of query: 29
effective length of database: 12,970,841
effective search space: 376154389
effective search space used: 376154389
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)