BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6473
(61 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P60469|LIPA3_MOUSE Liprin-alpha-3 OS=Mus musculus GN=Ppfia3 PE=1 SV=1
Length = 1043
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 24 GSSMTGGDSPLTARTQRLERVAQALA 49
G ++ G P T R+ RLER+AQALA
Sbjct: 556 GPAVPGDTPPPTPRSARLERMAQALA 581
>sp|A2STI3|SRP54_METLZ Signal recognition particle 54 kDa protein OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54
PE=3 SV=1
Length = 446
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 31 DSPLTARTQRLERVAQALAHSQEELRRLVKY 61
D P T R+ RVA+ S EE+R L+KY
Sbjct: 380 DEPALINTSRMIRVAKGSGSSVEEVRDLIKY 410
>sp|Q6LX03|SRP54_METMP Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain S2 / LL) GN=srp54 PE=3 SV=1
Length = 450
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 31 DSPLTARTQRLERVAQALAHSQEELRRLVKY 61
++P +T RL+R+A+ QEE++ L+KY
Sbjct: 386 ENPELIKTSRLQRIAKGAGVKQEEIKDLLKY 416
>sp|Q54BN0|TMEDB_DICDI Transmembrane emp24 domain-containing protein B OS=Dictyostelium
discoideum GN=empB PE=3 SV=1
Length = 209
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 20 EDEAGSSMTGGDS--PLTARTQRLERVAQALAHSQEELR 56
E+E + GDS P+ Q++ERV Q++ H Q++LR
Sbjct: 120 EEEGVKEVAKGDSITPMDQSVQKIERVLQSVIHEQKKLR 158
>sp|Q5PBP9|SYH_ANAMM Histidine--tRNA ligase OS=Anaplasma marginale (strain St. Maries)
GN=hisS PE=3 SV=1
Length = 430
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 1 MEFKLQTLFISETIMQLNEEDEAGSSMTGGDSPLTARTQRLERVAQALAHSQ 52
EFK +L + ++ D+ +SM GGD P +ER+A A+S
Sbjct: 267 FEFKTTSLGSQDAVIAGGRYDKLVASMGGGDVPAVGFAGGVERLASLAAYSH 318
>sp|B9KHM7|SYH_ANAMF Histidine--tRNA ligase OS=Anaplasma marginale (strain Florida)
GN=hisS PE=3 SV=1
Length = 430
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 1 MEFKLQTLFISETIMQLNEEDEAGSSMTGGDSPLTARTQRLERVAQALAHSQ 52
EFK +L + ++ D+ +SM GGD P +ER+A A+S
Sbjct: 267 FEFKTTSLGSQDAVIAGGRYDKLVASMGGGDVPAVGFAGGVERLASLAAYSH 318
>sp|A6UWG4|SRP54_META3 Signal recognition particle 54 kDa protein OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3
SV=1
Length = 450
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 31 DSPLTARTQRLERVAQALAHSQEELRRLVKY 61
++P +T R++R+A+ QEE++ L+KY
Sbjct: 386 ENPDIIKTSRMKRIAKGAGVKQEEIKELLKY 416
>sp|O50314|BCHH_CHLP8 Magnesium-chelatase subunit H OS=Chlorobaculum parvum (strain NCIB
8327) GN=bchH PE=3 SV=2
Length = 1272
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 2 EFKLQTLFISETIMQLNEEDEAGSSMTGGDSPLTAR-TQRLERVAQALAHSQEELRRLVK 60
EF QT+F + MQ+ E G M D P R Q + QAL+ + E+ LVK
Sbjct: 791 EFVKQTMFDRKNPMQVFESVTGGGRMPEEDKPFIQRIIQEGAMMIQALSDNSSEMNSLVK 850
>sp|A6UQJ8|SRP54_METVS Signal recognition particle 54 kDa protein OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54
PE=3 SV=1
Length = 450
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 31 DSPLTARTQRLERVAQALAHSQEELRRLVKY 61
++P +T RL+R+A+ Q+E++ L+KY
Sbjct: 386 ENPELIKTSRLQRIAKGAGVKQDEIKDLLKY 416
>sp|A4FVX4|SRP54_METM5 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3
SV=1
Length = 450
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 31 DSPLTARTQRLERVAQALAHSQEELRRLVKY 61
++P +T RL+R+A+ Q+E++ L+KY
Sbjct: 386 ENPELIKTSRLQRIAKGAGVKQDEIKDLLKY 416
>sp|Q6UDJ5|DEN_PSHV1 Deneddylase UL36 OS=Psittacid herpesvirus 1 (isolate Amazon
parrot/-/97-0001/1997) GN=UL36 PE=3 SV=1
Length = 3195
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 24 GSSM---TGGDSPLTARTQRLERVAQALAHSQEELRRL 58
GS M TGG P A +RLE++ +A A + +L+RL
Sbjct: 1557 GSKMARETGGVGPTAAYAERLEKLCRARADADAKLKRL 1594
>sp|A9WNB3|RF1_RENSM Peptide chain release factor 1 OS=Renibacterium salmoninarum
(strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589
/ NCIMB 2235) GN=prfA PE=3 SV=1
Length = 360
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 14 IMQLNEEDEAGSSMTGGDSPLTARTQRLERVAQALAHSQEELRRLV 59
+ QL+++ A M DS A LE + LAH+QE+LRRL+
Sbjct: 51 VQQLSDDLAAAKEMASEDSEFAAEVPVLE---EQLAHAQEKLRRLL 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,672,444
Number of Sequences: 539616
Number of extensions: 511377
Number of successful extensions: 1578
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1569
Number of HSP's gapped (non-prelim): 14
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)