Query psy6473
Match_columns 61
No_of_seqs 4 out of 6
Neff 1.3
Searched_HMMs 46136
Date Fri Aug 16 19:01:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06719 precorrin-2 dehydroge 72.7 6.9 0.00015 25.2 3.6 34 26-60 123-156 (157)
2 PRK05562 precorrin-2 dehydroge 69.5 8 0.00017 27.2 3.6 21 25-45 138-160 (223)
3 PRK13998 potassium-transportin 66.2 13 0.00028 26.4 4.1 35 25-60 125-159 (186)
4 PF02669 KdpC: K+-transporting 65.1 13 0.00029 26.2 4.0 35 25-60 126-160 (188)
5 PRK13995 potassium-transportin 64.4 14 0.00031 26.5 4.1 35 25-60 137-171 (203)
6 PRK14003 potassium-transportin 63.8 15 0.00033 26.2 4.1 35 25-60 130-164 (194)
7 PRK13999 potassium-transportin 63.5 15 0.00033 26.4 4.1 35 25-60 136-170 (201)
8 PRK13994 potassium-transportin 61.5 17 0.00036 26.6 4.1 35 25-60 157-191 (222)
9 PRK14001 potassium-transportin 61.5 18 0.00038 25.7 4.1 35 25-60 127-161 (189)
10 PRK00315 potassium-transportin 61.1 18 0.00039 25.7 4.1 35 25-60 127-161 (193)
11 PRK14002 potassium-transportin 61.0 18 0.0004 25.6 4.1 35 25-60 123-157 (186)
12 PRK13996 potassium-transportin 60.6 19 0.0004 25.8 4.1 35 25-60 133-167 (197)
13 PRK14000 potassium-transportin 59.7 20 0.00043 25.5 4.1 35 25-60 126-160 (185)
14 TIGR01470 cysG_Nterm siroheme 59.3 14 0.00029 24.8 3.1 20 25-44 122-143 (205)
15 TIGR00681 kdpC K+-transporting 58.8 21 0.00046 25.2 4.1 35 25-60 125-159 (187)
16 PF10498 IFT57: Intra-flagella 57.7 18 0.00038 27.2 3.8 44 7-58 303-347 (359)
17 PRK13997 potassium-transportin 56.5 24 0.00052 25.2 4.1 35 25-60 129-163 (193)
18 PRK10637 cysG siroheme synthas 52.2 18 0.0004 26.7 3.1 20 25-44 125-146 (457)
19 PRK06718 precorrin-2 dehydroge 51.9 29 0.00063 23.1 3.7 16 25-40 122-137 (202)
20 COG1648 CysG Siroheme synthase 50.3 22 0.00048 24.4 3.1 26 25-51 125-150 (210)
21 COG2156 KdpC K+-transporting A 47.6 35 0.00076 24.7 3.8 34 25-59 128-161 (190)
22 PF08515 TGF_beta_GS: Transfor 42.6 13 0.00028 20.0 0.8 18 13-30 2-19 (29)
23 KOG0479|consensus 39.1 41 0.00088 29.1 3.5 39 9-49 583-622 (818)
24 PF14824 Sirohm_synth_M: Siroh 39.1 19 0.00042 19.2 1.1 14 28-41 11-24 (30)
25 KOG1688|consensus 37.8 42 0.00091 24.5 3.0 30 18-47 1-30 (188)
26 PF05524 PEP-utilisers_N: PEP- 37.0 42 0.00092 20.0 2.5 22 38-59 34-55 (123)
27 PF03428 RP-C: Replication pro 36.6 50 0.0011 22.6 3.1 28 31-58 129-156 (177)
28 COG3272 Uncharacterized conser 34.8 25 0.00054 25.1 1.4 14 45-58 37-50 (163)
29 cd07098 ALDH_F15-22 Aldehyde d 34.6 64 0.0014 23.3 3.5 29 30-58 35-63 (465)
30 PRK13824 replication initiatio 33.5 55 0.0012 24.8 3.2 28 31-58 141-168 (404)
31 PF02809 UIM: Ubiquitin intera 31.5 50 0.0011 15.5 1.8 13 42-54 5-17 (18)
32 PF12168 DNA_pol3_tau_4: DNA p 31.5 37 0.00079 21.3 1.7 21 27-47 16-36 (84)
33 PF02127 Peptidase_M18: Aminop 27.5 80 0.0017 24.2 3.2 35 22-58 271-306 (432)
34 PF09336 Vps4_C: Vps4 C termin 25.0 62 0.0013 18.5 1.7 27 35-61 26-57 (62)
35 PF00171 Aldedh: Aldehyde dehy 24.2 1.3E+02 0.0029 21.7 3.6 29 30-58 46-74 (462)
36 PRK02813 putative aminopeptida 24.0 1.3E+02 0.0028 22.8 3.7 36 22-59 264-300 (428)
37 cd07087 ALDH_F3-13-14_CALDH-li 23.2 1.6E+02 0.0034 21.3 3.9 30 30-59 15-44 (426)
38 COG1608 Predicted archaeal kin 23.0 72 0.0016 23.9 2.2 26 24-49 9-34 (252)
39 COG2005 ModE N-terminal domain 23.0 2E+02 0.0044 19.2 4.1 34 22-56 67-100 (130)
40 TIGR01237 D1pyr5carbox2 delta- 22.2 1.4E+02 0.0031 22.3 3.5 29 30-58 86-114 (511)
41 cd07093 ALDH_F8_HMSADH Human a 21.8 1.5E+02 0.0032 21.2 3.5 29 30-58 36-64 (455)
42 cd07134 ALDH_AlkH-like Pseudom 21.8 1.7E+02 0.0037 21.3 3.8 30 30-59 15-44 (433)
43 cd07090 ALDH_F9_TMBADH NAD+-de 21.5 1.6E+02 0.0035 21.2 3.6 30 30-59 36-65 (457)
44 cd07100 ALDH_SSADH1_GabD1 Myco 21.1 1.5E+02 0.0033 21.3 3.4 28 31-58 17-44 (429)
45 PLN00412 NADP-dependent glycer 21.1 1.6E+02 0.0035 22.0 3.7 30 30-59 70-99 (496)
46 PF15394 DUF4616: Domain of un 21.0 73 0.0016 26.3 2.0 39 9-48 420-458 (537)
47 cd07091 ALDH_F1-2_Ald2-like AL 21.0 1.7E+02 0.0038 21.2 3.7 28 31-58 61-88 (476)
48 cd07137 ALDH_F3FHI Plant aldeh 20.9 1.8E+02 0.0039 21.3 3.8 30 30-59 16-45 (432)
49 cd07133 ALDH_CALDH_CalB Conife 20.7 1.8E+02 0.004 21.1 3.8 29 30-58 15-43 (434)
50 cd07128 ALDH_MaoC-N N-terminal 20.4 1.5E+02 0.0033 22.6 3.5 30 29-58 53-82 (513)
51 cd07150 ALDH_VaniDH_like Pseud 20.1 1.8E+02 0.0038 20.8 3.6 29 30-58 38-66 (451)
52 PRK13473 gamma-aminobutyraldeh 20.1 1.7E+02 0.0037 21.3 3.5 29 30-58 56-84 (475)
No 1
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=72.69 E-value=6.9 Score=25.18 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=24.5
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 26 SMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 26 s~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
=.|++.||..||.+| +++...|-...++|-|..|
T Consensus 123 isT~G~sP~la~~lr-~~ie~~l~~~~~~~a~~~~ 156 (157)
T PRK06719 123 ISTSGKDPSFTKRLK-QELTSILPKLIKKISRTHK 156 (157)
T ss_pred EECCCcChHHHHHHH-HHHHHHhhHHHHHHHhhcc
Confidence 346778999999998 4455666667777776654
No 2
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=69.47 E-value=8 Score=27.19 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=15.9
Q ss_pred CCCCCCCChhhHHHHH--HHHHH
Q psy6473 25 SSMTGGDSPLTARTQR--LERVA 45 (61)
Q Consensus 25 ss~s~~~spltart~r--lerv~ 45 (61)
+=.|++.||.-||.+| ||.+.
T Consensus 138 aIST~G~sP~lar~lR~~ie~~l 160 (223)
T PRK05562 138 ALNTKGGSPKTSVFIGEKVKNFL 160 (223)
T ss_pred EEECCCcCcHHHHHHHHHHHHHH
Confidence 3457788999999998 66554
No 3
>PRK13998 potassium-transporting ATPase subunit C; Provisional
Probab=66.18 E-value=13 Score=26.44 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=27.7
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|+- ...|||+|=--|.++++++++
T Consensus 125 SGLDPhISp~aA~~-Qv~RVA~argl~~~~v~~LV~ 159 (186)
T PRK13998 125 SGLDPHITVENALK-QAPRIADARHVSTSRVADLIQ 159 (186)
T ss_pred ccCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 44444678988875 589999999999999998764
No 4
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=65.06 E-value=13 Score=26.16 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=26.8
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|+ ....|||+|=--+.++++++++
T Consensus 126 SGLDP~IS~~aA~-~Qv~RVA~argl~~~~v~~li~ 160 (188)
T PF02669_consen 126 SGLDPHISPAAAL-IQVPRVAKARGLSEEEVEALID 160 (188)
T ss_pred ccCCCCcCHHHHH-HHHHHHHHHhCcCHHHHHHHHH
Confidence 4444457777776 5689999999999999998763
No 5
>PRK13995 potassium-transporting ATPase subunit C; Provisional
Probab=64.40 E-value=14 Score=26.50 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=27.4
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||.-|+- ...|||+|=--|.++++++++
T Consensus 137 SGLDPhISp~aA~~-Qv~RVA~argl~~~~v~~LV~ 171 (203)
T PRK13995 137 SGLDPHISPKSAAI-QIPAVSKATGISESKLKKIVK 171 (203)
T ss_pred cCCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 33334678888875 589999999999999998764
No 6
>PRK14003 potassium-transporting ATPase subunit C; Provisional
Probab=63.77 E-value=15 Score=26.18 Aligned_cols=35 Identities=34% Similarity=0.443 Sum_probs=27.3
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|+- ...|||+|=--|.+++++.++
T Consensus 130 SGLDPhISp~aA~~-Qv~RVA~argl~~~~v~~LI~ 164 (194)
T PRK14003 130 SGLDPHISPEAARA-QIERVAKARGLPPDQLEILIT 164 (194)
T ss_pred ccCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 33334678888874 589999999999999998764
No 7
>PRK13999 potassium-transporting ATPase subunit C; Provisional
Probab=63.54 E-value=15 Score=26.36 Aligned_cols=35 Identities=34% Similarity=0.381 Sum_probs=27.7
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|+- ...|||+|=--|.++++++++
T Consensus 136 SGLDPhISp~aA~~-Qv~RVA~argls~~~v~~LV~ 170 (201)
T PRK13999 136 SGLDPDISPEAALF-QVPRVAKARGLPEDRLRDLVA 170 (201)
T ss_pred ccCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 33344678988875 589999999999999998764
No 8
>PRK13994 potassium-transporting ATPase subunit C; Provisional
Probab=61.54 E-value=17 Score=26.57 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=27.6
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|+- ...|||+|=--|.++++++++
T Consensus 157 SGLDPhISp~aA~~-Qv~RVA~argls~~~V~~LV~ 191 (222)
T PRK13994 157 SGLDPDISPAYADL-QVHRVAARNGLNVARVQKLVD 191 (222)
T ss_pred ccCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 33344678888874 589999999999999998764
No 9
>PRK14001 potassium-transporting ATPase subunit C; Provisional
Probab=61.47 E-value=18 Score=25.68 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=27.3
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|+- ...|||+|=--|.+++++.++
T Consensus 127 SGLDPhIS~~aA~~-Qv~RVA~argl~~~~v~~LV~ 161 (189)
T PRK14001 127 SGLDPAISVVNAKL-QAPRVAQARNISIRQVERLIE 161 (189)
T ss_pred ccCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 33334678888875 589999999999999998763
No 10
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=61.15 E-value=18 Score=25.71 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=27.3
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|+- ...|||+|=--|.+++++.++
T Consensus 127 SGLDPhIS~~aA~~-Qv~RVA~argl~~~~v~~LI~ 161 (193)
T PRK00315 127 SGLDPHISPAAAAY-QIPRVAAARQLPVEQVAQLVA 161 (193)
T ss_pred cCCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 33334678888875 589999999999999998764
No 11
>PRK14002 potassium-transporting ATPase subunit C; Provisional
Probab=61.04 E-value=18 Score=25.60 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=27.3
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|+- ...|||+|=--|.++++++++
T Consensus 123 SGLDPhISp~aA~~-Qv~RVA~argl~~~~v~~LV~ 157 (186)
T PRK14002 123 SGLDPNISPQAAYV-QVKRVAKARGMSEEKVKQLVD 157 (186)
T ss_pred cCCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 33334678888874 589999999999999998764
No 12
>PRK13996 potassium-transporting ATPase subunit C; Provisional
Probab=60.58 E-value=19 Score=25.76 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=27.3
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|+- ...|||+|=--|.++++++++
T Consensus 133 SGLDPhISp~aA~~-Qv~RVA~argls~~~v~~LV~ 167 (197)
T PRK13996 133 SGLDPHISVAAAKY-QVDRIAKNNNMSVKDVEDIID 167 (197)
T ss_pred cCCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 33344678888875 589999999999999998763
No 13
>PRK14000 potassium-transporting ATPase subunit C; Provisional
Probab=59.66 E-value=20 Score=25.48 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=27.5
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|+- ...|||+|=--|.++++++++
T Consensus 126 SGLDPhISp~aA~~-Qv~RVA~argls~~~v~~LV~ 160 (185)
T PRK14000 126 SGLDPDITVDNAKQ-QVKRIAKERNIDASKINHLID 160 (185)
T ss_pred ccCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 44444678888875 589999999999999998763
No 14
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=59.32 E-value=14 Score=24.78 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=15.3
Q ss_pred CCCCCCCChhhHHHHH--HHHH
Q psy6473 25 SSMTGGDSPLTARTQR--LERV 44 (61)
Q Consensus 25 ss~s~~~spltart~r--lerv 44 (61)
+=.|++.||..||.+| +|..
T Consensus 122 aisT~G~sP~la~~lr~~ie~~ 143 (205)
T TIGR01470 122 AISSGGAAPVLARLLRERIETL 143 (205)
T ss_pred EEECCCCCcHHHHHHHHHHHHh
Confidence 4457889999999998 4443
No 15
>TIGR00681 kdpC K+-transporting ATPase, C subunit. This chain has a single predicted transmembrane region near the amino end. It is part of a K+-transport ATPase that contains two other membrane-bound subunits, KdpA and KdpB, and a small subunit KdpF. KdpA is the K+-translocating subunit, KdpB the ATP-hydrolyzing subunit. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit [PubMed:9858692].
Probab=58.82 E-value=21 Score=25.24 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=27.1
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|.- ...|||+|=--|.++++++++
T Consensus 125 SGLDPhISp~aA~~-Qv~RVA~argl~~~~v~~LI~ 159 (187)
T TIGR00681 125 SGLDPHISPAAAQA-QFPRVAKARNISPQQLQSLIT 159 (187)
T ss_pred ccCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 33334578888875 589999999999999998764
No 16
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=57.72 E-value=18 Score=27.16 Aligned_cols=44 Identities=43% Similarity=0.646 Sum_probs=32.0
Q ss_pred hhhhhHHhhhhh-ccccCCCCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 7 TLFISETIMQLN-EEDEAGSSMTGGDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 7 ~~~~~E~l~~vs-E~D~tGss~s~~~spltart~rlerv~qalahsqeelrr~ 58 (61)
+.-++|+|.++- +-|+-|++||++ ||+. ++-+||..-.+|++..
T Consensus 303 L~~IseeLe~vK~emeerg~~mtD~-sPlv-------~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 303 LAEISEELEQVKQEMEERGSSMTDG-SPLV-------KIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCC-CHHH-------HHHHHHHHHHHHHHHh
Confidence 445677777764 558899999998 6753 5677888888887653
No 17
>PRK13997 potassium-transporting ATPase subunit C; Provisional
Probab=56.49 E-value=24 Score=25.18 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=27.1
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~k 60 (61)
||--.-+||..|+- ...|||+|=--|.++++++++
T Consensus 129 SGLDPhISp~aA~~-Qv~RVA~argls~~~v~~LV~ 163 (193)
T PRK13997 129 SGLDPDISPKAASV-QVERISKLTNIPKETLDQLIK 163 (193)
T ss_pred cCCCCCCCHHHHHH-HHHHHHHHhCcCHHHHHHHHH
Confidence 33334578888874 589999999999999998763
No 18
>PRK10637 cysG siroheme synthase; Provisional
Probab=52.17 E-value=18 Score=26.74 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=15.4
Q ss_pred CCCCCCCChhhHHHHH--HHHH
Q psy6473 25 SSMTGGDSPLTARTQR--LERV 44 (61)
Q Consensus 25 ss~s~~~spltart~r--lerv 44 (61)
+=.|++.||..||.+| ||..
T Consensus 125 aisT~G~sP~~a~~lr~~ie~~ 146 (457)
T PRK10637 125 AVSSGGTSPVLARLLREKLESL 146 (457)
T ss_pred EEECCCCCcHHHHHHHHHHHHh
Confidence 3457889999999998 5544
No 19
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=51.87 E-value=29 Score=23.08 Aligned_cols=16 Identities=44% Similarity=0.482 Sum_probs=13.1
Q ss_pred CCCCCCCChhhHHHHH
Q psy6473 25 SSMTGGDSPLTARTQR 40 (61)
Q Consensus 25 ss~s~~~spltart~r 40 (61)
+=.|++.||..||.+|
T Consensus 122 aIsT~G~sP~la~~lr 137 (202)
T PRK06718 122 SVSTDGASPKLAKKIR 137 (202)
T ss_pred EEECCCCChHHHHHHH
Confidence 3457788999999988
No 20
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=50.27 E-value=22 Score=24.42 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=18.9
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhc
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHS 51 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahs 51 (61)
+=.|++.||..||.+| |++.+.|.-+
T Consensus 125 aIsT~G~sP~la~~ir-~~Ie~~l~~~ 150 (210)
T COG1648 125 AISTGGKSPVLARLLR-EKIEALLPPS 150 (210)
T ss_pred EEECCCCChHHHHHHH-HHHHHHcCCc
Confidence 4468889999999887 5666555444
No 21
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=47.55 E-value=35 Score=24.65 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=25.1
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhh
Q psy6473 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLV 59 (61)
Q Consensus 25 ss~s~~~spltart~rlerv~qalahsqeelrr~~ 59 (61)
||--..+||..|+- ...||+.|---+.+.++...
T Consensus 128 SGLDP~Isp~aA~~-QvpRVA~argi~~~~v~~lI 161 (190)
T COG2156 128 SGLDPHISPAAAAY-QVPRVAKARGISEEQVKQLI 161 (190)
T ss_pred cCCCCCCCHHHHHH-HhHHHHHHhCCCHHHHHHHH
Confidence 33334678888875 58999999988888887654
No 22
>PF08515 TGF_beta_GS: Transforming growth factor beta type I GS-motif; InterPro: IPR003605 Transforming growth factor beta (TGF-beta) is a member of a large family of secreted growth factors of central importance in eukaryotic development and homeostasis. Members of this family, which includes the activins, inhibins and bone morphogenic proteins (BMPs), bind to receptors that consist of two transmembrane serine/threonine (Ser/Thr) kinases called the type I and type II receptors. Type II activates Type I upon formation of the ligand receptor complex by multiply phosphorylating the GS domain, a short (~30 residues), highly conserved regulatory sequence just N-terminal to the kinase domain on the cytoplasmic side of the receptor. The GS domain is found only in the type I receptor family and is named for the TTSGSGSG sequence at its core. At least three, and perhaps four to five of the serines and threonines in the GS domain, must be phosphorylated to fully activate TbetaR-1 []. The GS domain forms a helix-loop-helix structure in which the sites of activating phosphorylation are situated in a loop known as the GS loop. One key role for phosphorylation is to block the adoption of an inactivating configuration by the GS domain [].; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 3MY0_H 3Q4U_B 3H9R_A 3MTF_B 3OOM_A 3KCF_C 3FAA_A 1IAS_A 1PY5_A 2X7O_C ....
Probab=42.61 E-value=13 Score=19.98 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=10.4
Q ss_pred HhhhhhccccCCCCCCCC
Q psy6473 13 TIMQLNEEDEAGSSMTGG 30 (61)
Q Consensus 13 ~l~~vsE~D~tGss~s~~ 30 (61)
++..+-|.+.+.|||||-
T Consensus 2 tl~dl~~~~~tSGSGSGl 19 (29)
T PF08515_consen 2 TLKDLLEDSSTSGSGSGL 19 (29)
T ss_dssp -HHHHHHHHHCCTSSSSS
T ss_pred cHHHHhhccccCCCCCCc
Confidence 345555666666777754
No 23
>KOG0479|consensus
Probab=39.12 E-value=41 Score=29.09 Aligned_cols=39 Identities=38% Similarity=0.481 Sum_probs=24.6
Q ss_pred hhhHHhhhhhccccCCCCCCCCCChhhHHHHH-HHHHHHHHh
Q psy6473 9 FISETIMQLNEEDEAGSSMTGGDSPLTARTQR-LERVAQALA 49 (61)
Q Consensus 9 ~~~E~l~~vsE~D~tGss~s~~~spltart~r-lerv~qala 49 (61)
.|.|+.-.+-..|..+ -.+..||+|||++- |=|++-|-|
T Consensus 583 ~Ia~~Y~~LR~~d~~~--d~~rt~PiTARtLETlIRLaTAhA 622 (818)
T KOG0479|consen 583 YIAEEYTDLRNDDSRK--DQERTSPITARTLETLIRLATAHA 622 (818)
T ss_pred HHHHHHhhhhcccccc--ccccccCCcHHHHHHHHHHHHHHH
Confidence 3445555555555554 56788999999973 556555443
No 24
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=39.12 E-value=19 Score=19.21 Aligned_cols=14 Identities=50% Similarity=0.544 Sum_probs=10.5
Q ss_pred CCCCChhhHHHHHH
Q psy6473 28 TGGDSPLTARTQRL 41 (61)
Q Consensus 28 s~~~spltart~rl 41 (61)
|++.||.-|+-+|=
T Consensus 11 TnG~sP~la~~iR~ 24 (30)
T PF14824_consen 11 TNGKSPRLARLIRK 24 (30)
T ss_dssp ESSS-HHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 57789999998873
No 25
>KOG1688|consensus
Probab=37.82 E-value=42 Score=24.46 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=24.1
Q ss_pred hccccCCCCCCCCCChhhHHHHHHHHHHHH
Q psy6473 18 NEEDEAGSSMTGGDSPLTARTQRLERVAQA 47 (61)
Q Consensus 18 sE~D~tGss~s~~~spltart~rlerv~qa 47 (61)
+|-|+.|+++++.+||+--.-.++.+.-|-
T Consensus 1 ~e~~~~~~~~~~~a~~v~~~~~~~~~~yQ~ 30 (188)
T KOG1688|consen 1 MEDDSSGEDSGGVASPVKRFFHELSQLYQH 30 (188)
T ss_pred CCccccCCCCCCcchHHHHHHHHHHHHHHH
Confidence 366788888888999998888888887664
No 26
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=36.96 E-value=42 Score=20.01 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHhh
Q psy6473 38 TQRLERVAQALAHSQEELRRLV 59 (61)
Q Consensus 38 t~rlerv~qalahsqeelrr~~ 59 (61)
.--++||-+||..+++||+...
T Consensus 34 ~~E~~rl~~Al~~~~~eL~~l~ 55 (123)
T PF05524_consen 34 EAEIERLEQALEKAREELEQLA 55 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999997653
No 27
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=36.63 E-value=50 Score=22.58 Aligned_cols=28 Identities=43% Similarity=0.567 Sum_probs=24.0
Q ss_pred CChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 31 DSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 31 ~spltart~rlerv~qalahsqeelrr~ 58 (61)
-|||-+|.--|+.++++...-++++++.
T Consensus 129 LsPL~~R~~El~~~a~~~~~~~~~~r~l 156 (177)
T PF03428_consen 129 LSPLIARAEELAALAEAARAERRALRRL 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999988888877764
No 28
>COG3272 Uncharacterized conserved protein [Function unknown]
Probab=34.79 E-value=25 Score=25.11 Aligned_cols=14 Identities=57% Similarity=0.662 Sum_probs=11.4
Q ss_pred HHHHhhcHHHHHHh
Q psy6473 45 AQALAHSQEELRRL 58 (61)
Q Consensus 45 ~qalahsqeelrr~ 58 (61)
-+-|||||+|.|..
T Consensus 37 L~LlAhsq~~yR~L 50 (163)
T COG3272 37 LLLLAHSQPEYRKL 50 (163)
T ss_pred HHHhhcChHHHHHH
Confidence 35689999999865
No 29
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=34.56 E-value=64 Score=23.31 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=24.9
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~ 58 (61)
...|...|...|++++..|....+||-+.
T Consensus 35 ~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 63 (465)
T cd07098 35 AKTSFAERRKVLRSLLKYILENQEEICRV 63 (465)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34588899999999999999999998764
No 30
>PRK13824 replication initiation protein RepC; Provisional
Probab=33.55 E-value=55 Score=24.81 Aligned_cols=28 Identities=39% Similarity=0.615 Sum_probs=24.6
Q ss_pred CChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 31 DSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 31 ~spltart~rlerv~qalahsqeelrr~ 58 (61)
-|||-+|.--|++.++++..-++++|+.
T Consensus 141 LsPL~~R~~El~~~A~~~~ae~~~~r~l 168 (404)
T PRK13824 141 LAPLLARAEEFEALAEQVAAERKALRRL 168 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998888887764
No 31
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=31.51 E-value=50 Score=15.48 Aligned_cols=13 Identities=46% Similarity=0.496 Sum_probs=9.3
Q ss_pred HHHHHHHhhcHHH
Q psy6473 42 ERVAQALAHSQEE 54 (61)
Q Consensus 42 erv~qalahsqee 54 (61)
+.+.+||+-|.+|
T Consensus 5 ~~L~~Al~~S~~e 17 (18)
T PF02809_consen 5 EDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcc
Confidence 3467788888776
No 32
>PF12168 DNA_pol3_tau_4: DNA polymerase III subunits tau domain IV DnaB-binding; InterPro: IPR022001 This domain found in bacterial proteins, and is approximately 80 amino acids in length. It is found in association with PF00004 from PFAM. domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding domain IV and all of the alpha-interacting domain V are unique to tau.
Probab=31.48 E-value=37 Score=21.31 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=17.4
Q ss_pred CCCCCChhhHHHHHHHHHHHH
Q psy6473 27 MTGGDSPLTARTQRLERVAQA 47 (61)
Q Consensus 27 ~s~~~spltart~rlerv~qa 47 (61)
-+.++|+-.||+--|||||+-
T Consensus 16 K~epasa~~a~~SaLERlA~~ 36 (84)
T PF12168_consen 16 KSEPASAKKARNSALERLASV 36 (84)
T ss_pred CCCCCCCccchhHHHHHHHhh
Confidence 357788888889999999987
No 33
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=27.51 E-value=80 Score=24.16 Aligned_cols=35 Identities=46% Similarity=0.640 Sum_probs=26.2
Q ss_pred cCC-CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 22 EAG-SSMTGGDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 22 ~tG-ss~s~~~spltart~rlerv~qalahsqeelrr~ 58 (61)
|.| .+-+|+.||+.-.. |+|++.++..+.++.+|.
T Consensus 271 EiGS~s~~GA~S~fl~~~--l~ri~~~~~~~~~~~~~~ 306 (432)
T PF02127_consen 271 EIGSESRQGADSPFLEDV--LERILAALGGSREFYRRI 306 (432)
T ss_dssp GGTSTSTTSTTSTHHHHH--HHHHHHHCSTTTHHHHHH
T ss_pred ccCCCccccccchHHHHH--HHHHHHhcCCCHHHHHHH
Confidence 455 45678999998655 689999998887776653
No 34
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=25.01 E-value=62 Score=18.51 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHhh-----cHHHHHHhhcC
Q psy6473 35 TARTQRLERVAQALAH-----SQEELRRLVKY 61 (61)
Q Consensus 35 tart~rlerv~qalah-----sqeelrr~~ky 61 (61)
..+.+-++-|-.||.+ |+++|+++.++
T Consensus 26 ~~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w 57 (62)
T PF09336_consen 26 KEPPITMEDFEEALKKVKPSVSQEDLKKYEEW 57 (62)
T ss_dssp -HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4445668889999987 68999998753
No 35
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=24.21 E-value=1.3e+02 Score=21.68 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=24.3
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~ 58 (61)
..-|...|...|+|+++.|..-.+||-+.
T Consensus 46 ~~~~~~~R~~iL~~~a~~l~~~~~~la~~ 74 (462)
T PF00171_consen 46 SKLPAAERARILERFADLLEERRDELAEL 74 (462)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHhhcccccccc
Confidence 34578899999999999999888888654
No 36
>PRK02813 putative aminopeptidase 2; Provisional
Probab=23.98 E-value=1.3e+02 Score=22.81 Aligned_cols=36 Identities=36% Similarity=0.614 Sum_probs=26.3
Q ss_pred cCC-CCCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHhh
Q psy6473 22 EAG-SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLV 59 (61)
Q Consensus 22 ~tG-ss~s~~~spltart~rlerv~qalahsqeelrr~~ 59 (61)
|.| .|-+|+.||+.-.. |+|++.++..+.+++++..
T Consensus 264 EVGs~~~~GA~s~~l~~~--l~ri~~~~~~~~~~~~~~i 300 (428)
T PRK02813 264 EVGSATKQGADSPFLEDV--LERIVLALGGDREDFLRAL 300 (428)
T ss_pred ccCCCCCcccCchhHHHH--HHHHHHhhcCchHHHHHhh
Confidence 445 34568888887665 6899999888888877653
No 37
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=23.15 E-value=1.6e+02 Score=21.28 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHhh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRLV 59 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~~ 59 (61)
...|..-|..-|.|++.+|...++||.+..
T Consensus 15 ~~~~~~~R~~~L~~~a~~l~~~~~el~~~~ 44 (426)
T cd07087 15 KTRSLEWRKAQLKALKRMLTENEEEIAAAL 44 (426)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456888999999999999999999987653
No 38
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=23.02 E-value=72 Score=23.90 Aligned_cols=26 Identities=42% Similarity=0.703 Sum_probs=22.7
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHh
Q psy6473 24 GSSMTGGDSPLTARTQRLERVAQALA 49 (61)
Q Consensus 24 Gss~s~~~spltart~rlerv~qala 49 (61)
||-=|+-..|.|.|--+|+|++..++
T Consensus 9 GSvITdK~~p~t~r~~~l~ria~eI~ 34 (252)
T COG1608 9 GSVITDKDKPRTVREDRLRRIAREIS 34 (252)
T ss_pred ceeeecCCCcchhhHHHHHHHHHHHh
Confidence 45567788999999999999999988
No 39
>COG2005 ModE N-terminal domain of molybdenum-binding protein [General function prediction only]
Probab=22.97 E-value=2e+02 Score=19.22 Aligned_cols=34 Identities=29% Similarity=0.272 Sum_probs=21.3
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHHHhhcHHHHH
Q psy6473 22 EAGSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56 (61)
Q Consensus 22 ~tGss~s~~~spltart~rlerv~qalahsqeelr 56 (61)
..||++.|+ +-||++-.||=+--.++..-+++..
T Consensus 67 ~rGGk~gGg-a~LT~~g~~ll~~y~~l~~~~~~~~ 100 (130)
T COG2005 67 RRGGKGGGG-AVLTDFGERLLEEYRLLEKEIEEAL 100 (130)
T ss_pred ccCCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555444 7899888877666566665555543
No 40
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=22.18 E-value=1.4e+02 Score=22.28 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=23.3
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~ 58 (61)
...|...|...|.+++.+|...++||-+.
T Consensus 86 ~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 114 (511)
T TIGR01237 86 KKTPVRERAGILRKAAAIMERRRHELNAL 114 (511)
T ss_pred hcCCHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 34577888888999999999888888654
No 41
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=21.85 E-value=1.5e+02 Score=21.23 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=25.0
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~ 58 (61)
...|...|...|.+++.+|...++||-+.
T Consensus 36 ~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 64 (455)
T cd07093 36 SRMSPAERARILHKVADLIEARADELALL 64 (455)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688899999999999999999998654
No 42
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=21.84 E-value=1.7e+02 Score=21.29 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.7
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHhh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRLV 59 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~~ 59 (61)
...|...|..-|.|++..|..-++||-+..
T Consensus 15 ~~~~~~~R~~~L~~~a~~l~~~~~el~~~~ 44 (433)
T cd07134 15 RASTAAERIAKLKRLKKAILARREEIIAAL 44 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999987653
No 43
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=21.50 E-value=1.6e+02 Score=21.24 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.4
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHhh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRLV 59 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~~ 59 (61)
...|..-|...|.|++.+|...++||-+..
T Consensus 36 ~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 65 (457)
T cd07090 36 SATSGMERGRILRKAADLLRERNDEIARLE 65 (457)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346788899999999999999999987653
No 44
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=21.11 E-value=1.5e+02 Score=21.32 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=24.1
Q ss_pred CChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 31 DSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 31 ~spltart~rlerv~qalahsqeelrr~ 58 (61)
..|...|...|.+++.+|....+||-+.
T Consensus 17 ~~~~~~R~~~L~~~a~~l~~~~~~la~~ 44 (429)
T cd07100 17 KTSFAERAALLRKLADLLRERKDELARL 44 (429)
T ss_pred cCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4588899999999999999988888664
No 45
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=21.10 E-value=1.6e+02 Score=21.97 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=24.2
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHhh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRLV 59 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~~ 59 (61)
...|...|..-|.+++..|..-.+||.+..
T Consensus 70 ~~~~~~~R~~iL~~~a~~l~~~~~el~~~~ 99 (496)
T PLN00412 70 AKTPLWKRAELLHKAAAILKEHKAPIAECL 99 (496)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345778888899999999998888887653
No 46
>PF15394 DUF4616: Domain of unknown function (DUF4616)
Probab=21.01 E-value=73 Score=26.35 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=32.1
Q ss_pred hhhHHhhhhhccccCCCCCCCCCChhhHHHHHHHHHHHHH
Q psy6473 9 FISETIMQLNEEDEAGSSMTGGDSPLTARTQRLERVAQAL 48 (61)
Q Consensus 9 ~~~E~l~~vsE~D~tGss~s~~~spltart~rlerv~qal 48 (61)
-.+||+||= |+|+.+--|---+-|-+-|+.||-|+..-|
T Consensus 420 ~vteelMSD-EEDs~~epgVWVarpPrfRa~rLT~Lcyrl 458 (537)
T PF15394_consen 420 DVTEELMSD-EEDSLNEPGVWVARPPRFRAPRLTRLCYRL 458 (537)
T ss_pred hhhHHhhCc-cccccCCCceeeecCcccccHHHHHHHHHh
Confidence 357899985 459999878778889999999999988765
No 47
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=20.99 E-value=1.7e+02 Score=21.24 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.9
Q ss_pred CChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 31 DSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 31 ~spltart~rlerv~qalahsqeelrr~ 58 (61)
..|...|...|.+++.+|....+||-+.
T Consensus 61 ~~~~~~R~~~L~~~a~~l~~~~~~la~~ 88 (476)
T cd07091 61 KMDPRERGRLLNKLADLIERDRDELAAL 88 (476)
T ss_pred cCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6789999999999999999999888764
No 48
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=20.94 E-value=1.8e+02 Score=21.29 Aligned_cols=30 Identities=7% Similarity=0.173 Sum_probs=25.4
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHhh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRLV 59 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~~ 59 (61)
...|...|..-|.|++.+|....|||-+..
T Consensus 16 ~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~ 45 (432)
T cd07137 16 RTRSAEWRKSQLKGLLRLVDENEDDIFAAL 45 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999999997653
No 49
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=20.73 E-value=1.8e+02 Score=21.11 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.3
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~ 58 (61)
...|...|..-|.|++..|....+||-+.
T Consensus 15 ~~~~~~~R~~~L~~~a~~l~~~~~el~~~ 43 (434)
T cd07133 15 PPPSLEERRDRLDRLKALLLDNQDALAEA 43 (434)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999998765
No 50
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=20.43 E-value=1.5e+02 Score=22.59 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=25.9
Q ss_pred CCCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 29 GGDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 29 ~~~spltart~rlerv~qalahsqeelrr~ 58 (61)
-...|...|..-|.|++..|..-+|||-+.
T Consensus 53 W~~~~~~~Ra~~L~~~a~~l~~~~~~la~l 82 (513)
T cd07128 53 LRALTFHERAAMLKALAKYLMERKEDLYAL 82 (513)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999998764
No 51
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=20.12 E-value=1.8e+02 Score=20.82 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=24.3
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~ 58 (61)
...|...|..-|.++++.|...++||-+.
T Consensus 38 ~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 66 (451)
T cd07150 38 AATTPSERERILLKAAEIMERRADDLIDL 66 (451)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34578889999999999999999998764
No 52
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=20.08 E-value=1.7e+02 Score=21.29 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~ 58 (61)
...|...|...|++++..|....+||-+.
T Consensus 56 ~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 84 (475)
T PRK13473 56 SQTTPKERAEALLKLADAIEENADEFARL 84 (475)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888999999999888888664
Done!