Query psy6473
Match_columns 61
No_of_seqs 4 out of 6
Neff 1.3
Searched_HMMs 29240
Date Fri Aug 16 19:02:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2do9_A NALP10, nacht-, LRR- an 87.8 0.39 1.3E-05 29.7 2.7 34 24-58 1-35 (115)
2 2e5n_A RNA polymerase II elong 63.6 3.2 0.00011 26.1 1.6 22 28-50 3-24 (100)
3 3dfz_A SIRC, precorrin-2 dehyd 45.1 26 0.00089 23.0 3.7 14 27-40 145-158 (223)
4 2e19_A Transcription factor 8; 44.2 19 0.00065 19.4 2.5 21 24-44 1-21 (64)
5 2d3g_P Ubiquitin interacting m 41.8 15 0.00052 18.8 1.7 15 42-56 5-19 (26)
6 2d9m_A Zinc finger CCCH-type d 40.7 9.4 0.00032 22.6 0.9 11 48-58 39-49 (69)
7 2doa_A RNA polymerase II elong 36.9 15 0.00053 23.0 1.5 22 28-50 2-23 (104)
8 2cqq_A RSGI RUH-037, DNAJ homo 33.6 35 0.0012 19.3 2.6 22 39-60 32-53 (72)
9 2uwj_E Type III export protein 27.2 84 0.0029 18.8 3.6 27 31-58 15-41 (70)
10 3lap_A Arginine repressor; arg 22.7 79 0.0027 20.5 3.1 24 36-59 17-44 (170)
11 3iwj_A Putative aminoaldehyde 22.2 1.1E+02 0.0038 21.6 4.1 30 29-58 66-95 (503)
12 3p57_P Histone acetyltransfera 21.7 67 0.0023 19.7 2.5 22 31-52 2-23 (112)
13 1x57_A Endothelial differentia 21.4 97 0.0033 15.9 3.2 19 40-58 17-35 (91)
14 3b4w_A Aldehyde dehydrogenase; 20.9 1.4E+02 0.0049 21.1 4.4 30 29-58 64-93 (495)
15 1kyq_A Met8P, siroheme biosynt 20.6 82 0.0028 21.3 3.0 13 28-40 166-178 (274)
16 2eqm_A PHD finger protein 20-l 20.6 39 0.0013 19.7 1.2 10 24-33 1-10 (88)
17 1vlu_A Gamma-glutamyl phosphat 20.5 1.3E+02 0.0043 21.3 4.0 29 31-59 32-60 (468)
18 2lqh_B Forkhead box O3, FOXO3A 25.5 22 0.00075 20.6 0.0 26 4-32 10-36 (52)
No 1
>2do9_A NALP10, nacht-, LRR- and PYD-containing protein 10; apoptosis, inflammation, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=87.83 E-value=0.39 Score=29.74 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=24.4
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHh-hcHHHHHHh
Q psy6473 24 GSSMTGGDSPLTARTQRLERVAQALA-HSQEELRRL 58 (61)
Q Consensus 24 Gss~s~~~spltart~rlerv~qala-hsqeelrr~ 58 (61)
|||||.+.+|..|++.| .++...|. -+++||++.
T Consensus 1 ~~~~~~~~~~~ma~~~~-~~Ll~~Le~L~~eElkkF 35 (115)
T 2do9_A 1 GSSGSSGMALARANSPQ-EALLWALNDLEENSFKTL 35 (115)
T ss_dssp CCCCCSCSCCSCCSSHH-HHHHHHHHHSCHHHHHHH
T ss_pred CCCCcccccHHHHHHHH-HHHHHHHHHcCHHHHHHH
Confidence 78999999999999855 33444554 367788764
No 2
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.55 E-value=3.2 Score=26.11 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=17.7
Q ss_pred CCCCChhhHHHHHHHHHHHHHhh
Q psy6473 28 TGGDSPLTARTQRLERVAQALAH 50 (61)
Q Consensus 28 s~~~spltart~rlerv~qalah 50 (61)
+|..|+++-|++| |||+..||-
T Consensus 3 ~~~~~~v~~rplR-eRvIHLLAL 24 (100)
T 2e5n_A 3 SGSSGTISQRPYR-DRVIHLLAL 24 (100)
T ss_dssp CCCCCCSTTSCHH-HHHHHHHHH
T ss_pred CCCccccccCcHH-HHHHHHHHc
Confidence 4556788889998 899998884
No 3
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=45.15 E-value=26 Score=23.04 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=12.3
Q ss_pred CCCCCChhhHHHHH
Q psy6473 27 MTGGDSPLTARTQR 40 (61)
Q Consensus 27 ~s~~~spltart~r 40 (61)
.|++.||..||.+|
T Consensus 145 ST~G~sP~la~~iR 158 (223)
T 3dfz_A 145 STDGASPLLTKRIK 158 (223)
T ss_dssp ECTTSCHHHHHHHH
T ss_pred ECCCCCcHHHHHHH
Confidence 47789999999988
No 4
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.20 E-value=19 Score=19.37 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=15.4
Q ss_pred CCCCCCCCChhhHHHHHHHHH
Q psy6473 24 GSSMTGGDSPLTARTQRLERV 44 (61)
Q Consensus 24 Gss~s~~~spltart~rlerv 44 (61)
||||++...|...-...||+.
T Consensus 1 g~sg~~~~~p~~~Ql~~Le~~ 21 (64)
T 2e19_A 1 GSSGSSGQPPLKNLLSLLKAY 21 (64)
T ss_dssp CCCSCSCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCccHHHHHHHHHH
Confidence 788888888886665666654
No 5
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=41.77 E-value=15 Score=18.81 Aligned_cols=15 Identities=47% Similarity=0.419 Sum_probs=10.7
Q ss_pred HHHHHHHhhcHHHHH
Q psy6473 42 ERVAQALAHSQEELR 56 (61)
Q Consensus 42 erv~qalahsqeelr 56 (61)
|.+.+|||-||.|-.
T Consensus 5 EEl~LAlAlS~sEae 19 (26)
T 2d3g_P 5 EELQLALALSQSEAE 19 (26)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457788888877653
No 6
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.73 E-value=9.4 Score=22.56 Aligned_cols=11 Identities=36% Similarity=0.589 Sum_probs=9.4
Q ss_pred HhhcHHHHHHh
Q psy6473 48 LAHSQEELRRL 58 (61)
Q Consensus 48 lahsqeelrr~ 58 (61)
.||.++|||..
T Consensus 39 FAHG~~ELr~~ 49 (69)
T 2d9m_A 39 FAHGNAELHEW 49 (69)
T ss_dssp SBSSHHHHHHH
T ss_pred CcCCHHHHhhH
Confidence 69999999973
No 7
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=36.87 E-value=15 Score=23.03 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=16.9
Q ss_pred CCCCChhhHHHHHHHHHHHHHhh
Q psy6473 28 TGGDSPLTARTQRLERVAQALAH 50 (61)
Q Consensus 28 s~~~spltart~rlerv~qalah 50 (61)
+.+.++++-|.+| |||+..||-
T Consensus 2 ~~~~~~v~~rplR-eRvIHLLAL 23 (104)
T 2doa_A 2 SSGSSGVSQRPFR-DRVLHLLAL 23 (104)
T ss_dssp CSSSCCSTTSCHH-HHHHHHHHH
T ss_pred CCCccccccCcHH-HHHHHHHHc
Confidence 3355777888888 899998884
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=33.61 E-value=35 Score=19.26 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhcHHHHHHhhc
Q psy6473 39 QRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 39 ~rlerv~qalahsqeelrr~~k 60 (61)
-|.|.||.++-.+-+|+++..+
T Consensus 32 ~RW~~IA~~lgRt~~eV~~~y~ 53 (72)
T 2cqq_A 32 GRWEKIAHELGRSVTDVTTKAK 53 (72)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHH
Confidence 5889999999999999887643
No 9
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=27.23 E-value=84 Score=18.80 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=21.9
Q ss_pred CChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 31 DSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 31 ~spltart~rlerv~qalahsqeelrr~ 58 (61)
+.|..+|.++. ++.|||+.-..+|.|+
T Consensus 15 ~~~~~~~~i~~-~L~qAl~~vKrqL~~G 41 (70)
T 2uwj_E 15 ADGTHAAALRQ-RLQAALAECRRELARG 41 (70)
T ss_dssp SSTHHHHHHHH-HHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHhcC
Confidence 66889999874 7899999887777764
No 10
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=22.68 E-value=79 Score=20.47 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHh----hcHHHHHHhh
Q psy6473 36 ARTQRLERVAQALA----HSQEELRRLV 59 (61)
Q Consensus 36 art~rlerv~qala----hsqeelrr~~ 59 (61)
-+..|++++.+-+. +|||||.+..
T Consensus 17 ~K~~R~~~I~~iI~~~~I~tQeEL~~~L 44 (170)
T 3lap_A 17 NRAGRQARIVAILSSAQVRSQNELAALL 44 (170)
T ss_dssp CHHHHHHHHHHHHHHSCCCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 47778888877776 6899998754
No 11
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=22.22 E-value=1.1e+02 Score=21.64 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=25.3
Q ss_pred CCCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 29 GGDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 29 ~~~spltart~rlerv~qalahsqeelrr~ 58 (61)
-...|...|...|.|++.+|..-++||-+.
T Consensus 66 w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 95 (503)
T 3iwj_A 66 WATASGAVRARYLRAIAAKVTEKKPELAKL 95 (503)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999998764
No 12
>3p57_P Histone acetyltransferase P300; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3io2_A
Probab=21.66 E-value=67 Score=19.73 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.5
Q ss_pred CChhhHHHHHHHHHHHHHhhcH
Q psy6473 31 DSPLTARTQRLERVAQALAHSQ 52 (61)
Q Consensus 31 ~spltart~rlerv~qalahsq 52 (61)
-||-..|...|+|..+.|-|+-
T Consensus 2 ~~~~~~r~~~iq~~l~~L~HA~ 23 (112)
T 3p57_P 2 MSPGDSRRLSIQRCIQSLVHAC 23 (112)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHc
Confidence 4899999999999999999963
No 13
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=21.42 E-value=97 Score=15.94 Aligned_cols=19 Identities=16% Similarity=0.171 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhcHHHHHHh
Q psy6473 40 RLERVAQALAHSQEELRRL 58 (61)
Q Consensus 40 rlerv~qalahsqeelrr~ 58 (61)
||..+-...--+|+||-+.
T Consensus 17 ~l~~~r~~~glsq~~lA~~ 35 (91)
T 1x57_A 17 VIQQGRQSKGLTQKDLATK 35 (91)
T ss_dssp HHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 3333333444466666543
No 14
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=20.94 E-value=1.4e+02 Score=21.10 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=25.1
Q ss_pred CCCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 29 GGDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 29 ~~~spltart~rlerv~qalahsqeelrr~ 58 (61)
-...|...|...|.|++..|..-.+||-+.
T Consensus 64 w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 93 (495)
T 3b4w_A 64 WPSTPPHERAAVIAAAVKMLAERKDLFTKL 93 (495)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999999999998765
No 15
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=20.65 E-value=82 Score=21.31 Aligned_cols=13 Identities=38% Similarity=0.327 Sum_probs=11.8
Q ss_pred CCCCChhhHHHHH
Q psy6473 28 TGGDSPLTARTQR 40 (61)
Q Consensus 28 s~~~spltart~r 40 (61)
|++.||.-||.+|
T Consensus 166 T~Gksp~lA~~ir 178 (274)
T 1kyq_A 166 TNGLSPRFGALVR 178 (274)
T ss_dssp ESSSCHHHHHHHH
T ss_pred CCCCCcHHHHHHH
Confidence 7889999999987
No 16
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=20.58 E-value=39 Score=19.73 Aligned_cols=10 Identities=50% Similarity=0.488 Sum_probs=6.1
Q ss_pred CCCCCCCCCh
Q psy6473 24 GSSMTGGDSP 33 (61)
Q Consensus 24 Gss~s~~~sp 33 (61)
|||||++-++
T Consensus 1 ~~~~~~~~~~ 10 (88)
T 2eqm_A 1 GSSGSSGMSK 10 (88)
T ss_dssp CCCCCCSCTT
T ss_pred CCCCcCCccc
Confidence 5666666554
No 17
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=20.52 E-value=1.3e+02 Score=21.32 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=24.9
Q ss_pred CChhhHHHHHHHHHHHHHhhcHHHHHHhh
Q psy6473 31 DSPLTARTQRLERVAQALAHSQEELRRLV 59 (61)
Q Consensus 31 ~spltart~rlerv~qalahsqeelrr~~ 59 (61)
..|...|...|.|++.+|..-.+||.+..
T Consensus 32 ~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 60 (468)
T 1vlu_A 32 TISNEGRSDILYKIHDALKANAHAIEEAN 60 (468)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999987753
No 18
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=25.52 E-value=22 Score=20.59 Aligned_cols=26 Identities=42% Similarity=0.640 Sum_probs=15.0
Q ss_pred hhhhhhhhHHhhhhhccccCCC-CCCCCCC
Q psy6473 4 KLQTLFISETIMQLNEEDEAGS-SMTGGDS 32 (61)
Q Consensus 4 klq~~~~~E~l~~vsE~D~tGs-s~s~~~s 32 (61)
.||-++.+. +++-.|+.|| +|+++.|
T Consensus 10 tlqdlltsd---slshsdgggsgggsgggs 36 (52)
T 2lqh_B 10 TLQDLLTSD---SLSHSDGGGSGGGSGGGS 36 (52)
Confidence 356566554 5677788774 3444433
Done!