Query psy6473
Match_columns 61
No_of_seqs 4 out of 6
Neff 1.3
Searched_HMMs 13730
Date Fri Aug 16 19:02:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6473.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6473hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pjqa3 e.37.1.1 (A:114-215) S 79.8 1.2 8.6E-05 24.9 3.7 14 27-40 14-27 (102)
2 d1gg4a1 c.59.1.1 (A:313-447) U 64.5 0.88 6.4E-05 25.8 0.6 13 36-48 122-134 (135)
3 d1ufma_ a.4.5.47 (A:) COP9 sig 61.4 2 0.00014 23.5 1.7 35 24-58 1-50 (84)
4 d1wjpa1 g.37.1.1 (A:1-42) Zinc 50.8 2.5 0.00018 22.5 0.9 12 24-35 1-12 (42)
5 d1ad3a_ c.82.1.1 (A:) Aldehyde 50.2 8.2 0.0006 25.0 3.6 29 30-58 17-45 (446)
6 d1m9oa_ g.66.1.1 (A:) Tristetr 41.5 0.64 4.6E-05 23.4 -2.5 11 48-58 29-39 (40)
7 d1rgoa1 g.66.1.1 (A:151-186) B 41.1 0.8 5.8E-05 22.6 -2.1 10 48-57 26-35 (36)
8 d1kyqa2 e.37.1.1 (A:151-273) B 35.0 24 0.0017 20.5 3.7 15 27-41 15-29 (123)
9 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 34.3 16 0.0011 19.2 2.6 22 39-60 25-46 (59)
10 d1wnda_ c.82.1.1 (A:) Putative 31.7 28 0.0021 22.3 4.0 28 31-58 57-84 (474)
11 d1euha_ c.82.1.1 (A:) Aldehyde 28.5 30 0.0022 21.7 3.6 27 32-58 58-84 (474)
12 d1k2ea_ d.113.1.1 (A:) Hypothe 28.3 18 0.0013 18.5 2.1 15 36-50 137-151 (152)
13 d1zyma1 a.60.10.1 (A:22-144) E 27.5 22 0.0016 19.4 2.5 19 40-58 18-36 (123)
14 d1orsc_ f.14.1.1 (C:) Potassiu 23.5 25 0.0018 19.5 2.3 14 42-55 116-129 (132)
15 d1f81a_ g.53.1.1 (A:) CREB-bin 21.1 38 0.0027 18.4 2.7 21 32-52 1-21 (87)
No 1
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=79.81 E-value=1.2 Score=24.89 Aligned_cols=14 Identities=50% Similarity=0.774 Sum_probs=12.5
Q ss_pred CCCCCChhhHHHHH
Q psy6473 27 MTGGDSPLTARTQR 40 (61)
Q Consensus 27 ~s~~~spltart~r 40 (61)
.|++.||.-||.+|
T Consensus 14 STgG~sP~lar~lR 27 (102)
T d1pjqa3 14 SSGGTSPVLARLLR 27 (102)
T ss_dssp ECTTSCHHHHHHHH
T ss_pred eCCCcChHHHHHHH
Confidence 57889999999987
No 2
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}
Probab=64.48 E-value=0.88 Score=25.83 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHH
Q psy6473 36 ARTQRLERVAQAL 48 (61)
Q Consensus 36 art~rlerv~qal 48 (61)
+|+++||+++++|
T Consensus 122 Sr~~~le~iv~~L 134 (135)
T d1gg4a1 122 SRSAAMEEVVRAL 134 (135)
T ss_dssp CGGGTTHHHHHHH
T ss_pred cccccHHHHHHHh
Confidence 5899999999987
No 3
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.37 E-value=2 Score=23.52 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=25.4
Q ss_pred CCCCCCCCChhhHH---------------HHHHHHHHHHHhhcHHHHHHh
Q psy6473 24 GSSMTGGDSPLTAR---------------TQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 24 Gss~s~~~spltar---------------t~rlerv~qalahsqeelrr~ 58 (61)
|++|+.+.+++--| ++.|+++++.|.-+.+|+...
T Consensus 1 ~~~~~~~~~t~L~~~i~Ehni~~is~~Y~~Isl~~la~~l~l~~~evE~~ 50 (84)
T d1ufma_ 1 GSSGSSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKI 50 (84)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHH
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHhhceeeHHHHHHHHCCCHHHHHHH
Confidence 56777777777655 345888889888888877653
No 4
>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.85 E-value=2.5 Score=22.47 Aligned_cols=12 Identities=50% Similarity=0.756 Sum_probs=9.9
Q ss_pred CCCCCCCCChhh
Q psy6473 24 GSSMTGGDSPLT 35 (61)
Q Consensus 24 Gss~s~~~splt 35 (61)
|||||.++||+.
T Consensus 1 gssgssga~pve 12 (42)
T d1wjpa1 1 GSSGSSGASPVE 12 (42)
T ss_dssp CCCCCCCCCCCC
T ss_pred CCCCCCCCCccc
Confidence 688888899975
No 5
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=50.24 E-value=8.2 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=25.2
Q ss_pred CCChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 30 GDSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 30 ~~spltart~rlerv~qalahsqeelrr~ 58 (61)
...|+..|...|++++++|....+||-+.
T Consensus 17 ~~~s~~~R~~iL~~~a~~l~~~~~~l~~~ 45 (446)
T d1ad3a_ 17 KTRSLQFRIQQLEALQRMINENLKSISGA 45 (446)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 35688999999999999999999998764
No 6
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.50 E-value=0.64 Score=23.38 Aligned_cols=11 Identities=45% Similarity=0.637 Sum_probs=8.5
Q ss_pred HhhcHHHHHHh
Q psy6473 48 LAHSQEELRRL 58 (61)
Q Consensus 48 lahsqeelrr~ 58 (61)
.||+++|||..
T Consensus 29 FAHg~~ELr~~ 39 (40)
T d1m9oa_ 29 FAHGLGELRQA 39 (40)
T ss_dssp SCSSSCCGGGT
T ss_pred CCCCHHHhcCC
Confidence 48888888864
No 7
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.10 E-value=0.8 Score=22.60 Aligned_cols=10 Identities=50% Similarity=0.690 Sum_probs=7.8
Q ss_pred HhhcHHHHHH
Q psy6473 48 LAHSQEELRR 57 (61)
Q Consensus 48 lahsqeelrr 57 (61)
.||+++|||.
T Consensus 26 FAHg~~ELr~ 35 (36)
T d1rgoa1 26 FAHGFHELRS 35 (36)
T ss_dssp SBSSGGGCCC
T ss_pred CcCCHHHccC
Confidence 5899998873
No 8
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.96 E-value=24 Score=20.52 Aligned_cols=15 Identities=33% Similarity=0.164 Sum_probs=12.3
Q ss_pred CCCCCChhhHHHHHH
Q psy6473 27 MTGGDSPLTARTQRL 41 (61)
Q Consensus 27 ~s~~~spltart~rl 41 (61)
.|++.||..||.+|=
T Consensus 15 ST~G~sP~LA~~iR~ 29 (123)
T d1kyqa2 15 STNGLSPRFGALVRD 29 (123)
T ss_dssp EESSSCHHHHHHHHH
T ss_pred eCCCccHHHHHHHHH
Confidence 467889999999874
No 9
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.32 E-value=16 Score=19.17 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhcHHHHHHhhc
Q psy6473 39 QRLERVAQALAHSQEELRRLVK 60 (61)
Q Consensus 39 ~rlerv~qalahsqeelrr~~k 60 (61)
-|.|++|.++-.+-+|..+..|
T Consensus 25 ~RW~~IA~~vgkt~~ev~~~~k 46 (59)
T d2cqqa1 25 GRWEKIAHELGRSVTDVTTKAK 46 (59)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 4999999999999999877665
No 10
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]}
Probab=31.72 E-value=28 Score=22.34 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=23.9
Q ss_pred CChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 31 DSPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 31 ~spltart~rlerv~qalahsqeelrr~ 58 (61)
..|...|..-|.|+++.|..-++||-+.
T Consensus 57 ~~~~~~R~~iL~~~a~~l~~~~~ela~~ 84 (474)
T d1wnda_ 57 QTTPKVRAECLLKLADVIEENGQVFAEL 84 (474)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4567789999999999999999998764
No 11
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Streptococcus mutans [TaxId: 1309]}
Probab=28.49 E-value=30 Score=21.74 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.2
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHh
Q psy6473 32 SPLTARTQRLERVAQALAHSQEELRRL 58 (61)
Q Consensus 32 spltart~rlerv~qalahsqeelrr~ 58 (61)
.|...|...|.|++..|...++||-..
T Consensus 58 ~s~~~R~~iL~~~a~~L~~~~~~la~~ 84 (474)
T d1euha_ 58 LSYIERAAYLHKVADILMRDKEKIGAI 84 (474)
T ss_dssp SCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 467788899999999999888888653
No 12
>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=28.30 E-value=18 Score=18.49 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhh
Q psy6473 36 ARTQRLERVAQALAH 50 (61)
Q Consensus 36 art~rlerv~qalah 50 (61)
.|.-+++|.++|+.|
T Consensus 137 ~~~~~~~~l~~a~~~ 151 (152)
T d1k2ea_ 137 YRLGKISKLAAALEH 151 (152)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hhcCchhhHHHHhhc
Confidence 456678888888877
No 13
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain {Escherichia coli [TaxId: 562]}
Probab=27.46 E-value=22 Score=19.45 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhcHHHHHHh
Q psy6473 40 RLERVAQALAHSQEELRRL 58 (61)
Q Consensus 40 rlerv~qalahsqeelrr~ 58 (61)
-++||-+|+..+.++|+..
T Consensus 18 E~~rl~~A~~~~~~~L~~l 36 (123)
T d1zyma1 18 EVERFLSGRAKASAQLETI 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778999999999998754
No 14
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=23.51 E-value=25 Score=19.49 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=8.0
Q ss_pred HHHHHHHhhcHHHH
Q psy6473 42 ERVAQALAHSQEEL 55 (61)
Q Consensus 42 erv~qalahsqeel 55 (61)
.++..|+++|-++|
T Consensus 116 ~~ll~ai~~s~~~l 129 (132)
T d1orsc_ 116 SKFLSAIADAADKL 129 (132)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 34455666666554
No 15
>d1f81a_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.07 E-value=38 Score=18.39 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.3
Q ss_pred ChhhHHHHHHHHHHHHHhhcH
Q psy6473 32 SPLTARTQRLERVAQALAHSQ 52 (61)
Q Consensus 32 spltart~rlerv~qalahsq 52 (61)
||-..|..-++|..++|-|..
T Consensus 1 ~~~e~r~~~iq~~l~~L~HA~ 21 (87)
T d1f81a_ 1 SPQESRRLSIQRCIQSLVHAC 21 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHc
Confidence 678889999999999999974
Done!