RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6473
(61 letters)
>gnl|CDD|193534 cd05658, M18_DAP, M18 Peptidase Aspartyl aminopeptidase. Peptidase
M18 family, Aspartyl aminopeptidase (DAP; EC 3.4.11.21)
subfamily. DAP is widely distributed in bacteria and
eukaryotes, but only the mammalian aspartyl
aminopeptidase has been characterized to date. DAP
cleaves only unblocked N-terminal acidic amino-acid
residues. It is a cytosolic enzyme and is highly
conserved; for example, the human enzyme has 51%
identity to an aspartyl aminopeptidase-like protein in
Arabidopsis thaliana. The mammalian DAP is highly
selective for hydrolysis of N-terminal aspartate or
glutamate residues from peptides. Unlike glutamyl
aminopeptidase (M42), DAP does not cleave simple
aminoaryl-arylamide substrates. Although there is lack
of understanding of the function of this enzyme, it is
thought to act in concert with other aminopeptidases to
facilitate protein turnover because of their restricted
specificities for the N-terminal aspartic and glutamic
acid, which cannot be cleaved by any other
aminopeptidases. The mammalian aspartyl aminopeptidase
is possibly contributing to the catabolism of peptides,
including those produced by the proteasome. It may also
trim the N-terminus of peptides that are intended for
the MHC class I system. In humans, DAP has been
implicated in the the specific function of converting
angiotensin II to the vasoactive angiotensin III within
the brain.
Length = 424
Score = 32.8 bits (76), Expect = 0.004
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 18 NEEDEAGS-SMTGGDSPLTARTQRLERVAQALAHSQEELRRLV 59
NEE GS S G DSP LER+A AL S+EE R +
Sbjct: 260 NEE--VGSESKQGADSPFLEDV--LERIAAALGGSREEYYRAL 298
>gnl|CDD|235073 PRK02813, PRK02813, putative aminopeptidase 2; Provisional.
Length = 428
Score = 30.9 bits (71), Expect = 0.022
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 18 NEEDEAGS-SMTGGDSPLTARTQRLERVAQALAHSQEELRR 57
+EE GS + G DSP LER+ AL +E+ R
Sbjct: 262 HEE--VGSATKQGADSPFLEDV--LERIVLALGGDREDFLR 298
>gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function
prediction only].
Length = 252
Score = 28.5 bits (64), Expect = 0.15
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 24 GSSMTGGDSPLTARTQRLERVAQALAHSQEE 54
GS +T D P T R RL R+A+ +++ + E
Sbjct: 9 GSVITDKDKPRTVREDRLRRIAREISNGKPE 39
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase
(EC=1.2.1.22) involved the biosynthesis of coenzyme
F(420) in Methanocaldococcus jannaschii through the
oxidation of lactaldehyde to lactate and generation of
NAPH, and similar sequences are included in this CD.
Length = 456
Score = 28.1 bits (63), Expect = 0.22
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 33 PLTARTQRLERVAQALAHSQEELRRLV 59
P R + L +VA+ + +EEL +L+
Sbjct: 41 PAYKRYKILMKVAELIERRKEELAKLL 67
>gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a
fosfomycin biosynthetic gene product, FomA, and similar
proteins found in a wide range of organisms. Together,
the fomA and fomB genes in the fosfomycin biosynthetic
gene cluster of Streptomyces wedmorensis confer
high-level fosfomycin resistance. FomA and FomB
proteins converted fosfomycin to fosfomycin
monophosphate and fosfomycin diphosphate in the
presence of ATP and a magnesium ion, indicating that
FomA and FomB catalyzed phosphorylations of fosfomycin
and fosfomycin monophosphate, respectively. FomA and
related sequences in this CD are members of the Amino
Acid Kinase Superfamily (AAK).
Length = 252
Score = 27.6 bits (62), Expect = 0.31
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 24 GSSMTGGDSPLTARTQRLERVAQALA 49
GS +T D P T R + LER+A+ LA
Sbjct: 8 GSVITDKDRPETIREENLERIARELA 33
>gnl|CDD|184349 PRK13824, PRK13824, replication initiation protein RepC;
Provisional.
Length = 404
Score = 27.1 bits (61), Expect = 0.50
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 32 SPLTARTQRLERVAQALAHSQEELRRL 58
+PL AR + E +A+ +A ++ LRRL
Sbjct: 142 APLLARAEEFEALAEQVAAERKALRRL 168
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas
sp. strain 16a and other similar sequences are present
in this CD. DDALDH converts
4,4'-diapolycopene-dialdehyde into
4,4'-diapolycopene-diacid.
Length = 453
Score = 26.4 bits (59), Expect = 0.75
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 30 GDSPLTARTQRLERVAQALAHSQEELRRLV 59
+ R QRL R +ALA +EL L+
Sbjct: 35 AALGVEGRAQRLLRWKRALADHADELAELL 64
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 26.3 bits (59), Expect = 0.93
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 31 DSPLTARTQRLERVAQALAHSQEELRRLV 59
+PL R L +A A+ + EEL RL+
Sbjct: 37 ATPLEERRAALLAIADAIEANAEELARLL 65
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 26.0 bits (58), Expect = 0.95
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 33 PLTARTQRLERVAQALAHSQEEL 55
P+ R + LE+ A L ++ EL
Sbjct: 89 PVEERAEILEKAADLLEANRGEL 111
>gnl|CDD|237723 PRK14479, PRK14479, dihydroxyacetone kinase; Provisional.
Length = 568
Score = 25.9 bits (58), Expect = 1.0
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 19 EEDEAGSSMTGGDSPLTARTQR--LERVAQALAHSQEELRRL 58
E+D S TA L+ VA+AL +++EL L
Sbjct: 344 EDDAEEPPRASKASRATAANLVAALDAVAEALIDNEDELGEL 385
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde
dehydrogenase has been characterized in both
prokaryotes and eukaryotes, functioning as a mammalian
tetramer and a bacterial homodimer. Although similar in
monomeric molecular mass and enzymatic activity, the
N-terminal sequence in P.aeruginosa does not correspond
with the N-terminal sequence predicted for rat liver.
Sequence homology to a variety of prokaryotic and
eukaryotic aldehyde dehydrogenases places MMSDH in the
aldehyde dehydrogenase (NAD+) superfamily (pfam00171),
making MMSDH's CoA requirement unique among known
ALDHs. Methylmalonate semialdehyde dehydrogenase is
closely related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class
1 and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade
with Listeria and Sulfolobus. This Bacillus protein has
been suggested to be located in an iol operon and/or
involved in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present
in Bacillus, Listeria, and Sulfolobus [Energy
metabolism, Amino acids and amines].
Length = 477
Score = 25.2 bits (55), Expect = 2.0
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 19 EEDEAGSS-----MTGGDSPLTARTQRLERVAQALAHSQEELRRLV 59
E D A +S +T G + L RT L R L ++E+ L+
Sbjct: 39 EVDAAVASARETFLTWGQTSLAQRTSVLLRYQALLKEHRDEIAELI 84
>gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase;
Provisional.
Length = 352
Score = 25.1 bits (56), Expect = 2.1
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 25 SSMTGGDSPLTAR-TQRLERVAQAL 48
++MTGG S ++L A+ L
Sbjct: 66 NAMTGG-SEKAKEINRKLAEAAEEL 89
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41.
This family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 24.8 bits (55), Expect = 2.7
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 31 DSPLTARTQRLERVAQALAHSQEELRRL 58
+P + R L + A L ++EL L
Sbjct: 47 KTPPSERAAILLKAADLLEERRDELAEL 74
>gnl|CDD|129764 TIGR00681, kdpC, K+-transporting ATPase, C subunit. This chain has
a single predicted transmembrane region near the amino
end. It is part of a K+-transport ATPase that contains
two other membrane-bound subunits, KdpA and KdpB, and a
small subunit KdpF. KdpA is the K+-translocating
subunit, KdpB the ATP-hydrolyzing subunit. During
assembly of the complex, KdpA and KdpC bind to each
other. This interaction is thought to stabilize the
complex [MEDLINE:9858692]. Data indicates that KdpC
might connect the KdpA, the K+-transporting subunit, to
KdpB, the ATP-hydrolyzing (energy providing) subunit
[MEDLINE:9858692] [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 187
Score = 24.1 bits (52), Expect = 5.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 23 AGSSMTGGDSPLTARTQRLERVAQALAHSQEELRRLV 59
+GS + SP A+ Q RVA+A S ++L+ L+
Sbjct: 123 SGSGLDPHISPAAAQAQ-FPRVAKARNISPQQLQSLI 158
>gnl|CDD|217175 pfam02669, KdpC, K+-transporting ATPase, c chain. This family
consists of K+-transporting ATPase, c chain, KdpC. KdpC
forms strong interactions with the KdpA subunit, serving
to assemble and stabilise the Kdp complex. It has been
suggested that KdpC could be one of the connecting links
between the energy providing subunit KdpB and the
K+-transporting subunit KdpA. The K+ transport system
actively transports K+ ions via ATP hydrolysis.
Length = 188
Score = 24.1 bits (52), Expect = 5.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 23 AGSSMTGGDSPLTARTQRLERVAQALAHSQEELRRLV 59
+GS + SP A+ Q RVA+A S ++L+ L+
Sbjct: 124 SGSGLDPHISPAAAQAQ-FPRVAKARNISPQQLQSLI 159
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent
aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent
aldehyde dehydrogenase of Magnetospirillum
gryphiswaldense MSR-1 (MGR_2402) , and other similar
sequences, are present in this CD.
Length = 457
Score = 24.2 bits (53), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 31 DSPLTARTQRLERVAQALAHSQEELRRLV 59
+P R + L R+A AL EEL RL+
Sbjct: 37 ATPARERGKLLARIADALEARSEELARLL 65
>gnl|CDD|185033 PRK15074, PRK15074, inosine/guanosine kinase; Provisional.
Length = 434
Score = 23.8 bits (52), Expect = 6.0
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 9 FISE--TIMQLNEEDEAGSSMTGGDSPLTARTQRLERV 44
F+ E +I+ +NE++ ++TG PL A + L+ V
Sbjct: 243 FLKEHVSILAMNEDE--AEALTGESDPLLASDKALDWV 278
>gnl|CDD|235658 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.
Length = 860
Score = 24.1 bits (53), Expect = 6.0
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 33 PLTARTQRLERVAQALAHSQEELRRLV 59
PL R RL L ++ + R
Sbjct: 351 PLEERRARL---RALLEAARSDRIRFS 374
>gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl
diphosphate isomerase type 2 (IDI-2) FMN-binding
domain. Two types of IDIs have been characterized at
present. The long known IDI-1 is only dependent on
divalent metals for activity, whereas IDI-2 requires a
metal, FMN and NADPH. IDI-2 catalyzes the
interconversion of isopentenyl diphosphate (IPP) and
dimethylallyl diphosphate (DMAPP) in the mevalonate
pathway.
Length = 326
Score = 24.0 bits (53), Expect = 6.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 25 SSMTGGDSPLTARTQRLERVAQAL 48
S+MTGG + L A+ L
Sbjct: 58 SAMTGGSEKAKEINRNLAEAAEEL 81
>gnl|CDD|184447 PRK14003, PRK14003, potassium-transporting ATPase subunit C;
Provisional.
Length = 194
Score = 23.9 bits (52), Expect = 6.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 23 AGSSMTGGDSPLTARTQRLERVAQALAHSQEELRRLVK 60
+GS + SP AR Q +ERVA+A ++L L+
Sbjct: 128 SGSGLDPHISPEAARAQ-IERVAKARGLPPDQLEILIT 164
>gnl|CDD|163533 TIGR03821, AblA_like_1, lysine-2,3-aminomutase-like protein.
Members of this protein form a distinctive clade,
homologous to lysine-2,3-aminomutase (of Bacillus,
Clostridium, and methanogenic archaea) and likely
similar in function. Members of this family are found in
E. coli, Buchnera, Yersinia, etc.
Length = 321
Score = 23.8 bits (52), Expect = 6.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 27 MTGGDSPLTARTQRLERVAQALAHSQEELRRL 58
++GGD PL A+ RL+ + L L+RL
Sbjct: 148 LSGGD-PLMAKDHRLDWLLNLLE-QIPHLKRL 177
>gnl|CDD|226100 COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms].
Length = 274
Score = 23.6 bits (51), Expect = 8.6
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 31 DSPLTARTQRLERVAQALAH-SQEELRRLVKY 61
L R+ R AH + RRL+++
Sbjct: 205 LDDLALAPGRIARQLAIFAHALGLDPRRLLQW 236
>gnl|CDD|236428 PRK09247, PRK09247, ATP-dependent DNA ligase; Validated.
Length = 539
Score = 23.6 bits (52), Expect = 8.7
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 33 PLTARTQRLERVAQALAHSQ 52
PL R RLE + L +
Sbjct: 335 PLAERRARLEALIARLPDPR 354
>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase. This
protein contains a glutamate 5-kinase (ProB, EC
2.7.2.11) region followed by a gamma-glutamyl phosphate
reductase (ProA, EC 1.2.1.41) region [Amino acid
biosynthesis, Glutamate family].
Length = 715
Score = 23.3 bits (50), Expect = 10.0
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 12 ETIMQLNEEDEAGSSMTGGDSPLTAR----TQRLERVA---QALAHSQEELRRLVK 60
+ I+ N++D A + G + L AR ++ +A + LA ++ + R++K
Sbjct: 326 DEILAENKKDVAAAQGAGYAASLVARLSMSPSKISSLAISLRQLAAMEDPIGRVLK 381
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.126 0.325
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,026,742
Number of extensions: 211076
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 36
Length of query: 61
Length of database: 10,937,602
Length adjustment: 32
Effective length of query: 29
Effective length of database: 9,518,274
Effective search space: 276029946
Effective search space used: 276029946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)