RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6473
(61 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 0.51
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 15/65 (23%)
Query: 1 MEFK--LQTLFI-SETIMQLNEEDEAGSSMTG--GDSPLTARTQRLERVAQALAHSQEEL 55
M + ++ +F T+ DE G S G +P RVA + SQE L
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP--------GRVAASF--SQEAL 1826
Query: 56 RRLVK 60
+ +V+
Sbjct: 1827 QYVVE 1831
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 0.61
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 31 DSPLTARTQRLERVAQALAHSQEELRRLVK 60
D T+R+ + + Q ELRRL+K
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding,
transferase, methanocald jannaschii, isopentenyl
monophosphate; 2.05A {Methanocaldococcus jannaschii}
PDB: 3k4y_A* 3k52_A* 3k56_A*
Length = 266
Score = 26.0 bits (57), Expect = 0.70
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 24 GSSMTGGDSPLTARTQRLERVAQALAHSQEELR 56
GS ++ + P + + LER+A + ++ + +
Sbjct: 15 GSILSDKNVPYSIKWDNLERIAMEIKNALDYYK 47
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural
genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Length = 177
Score = 23.6 bits (52), Expect = 4.3
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 36 ARTQ--RLERVAQALAHSQEELRRLV-KY 61
R+ R+ER A E+ R++ Y
Sbjct: 117 TRSVARRVERNAVKYTKELPEINRMIIVY 145
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 23.6 bits (52), Expect = 4.4
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 25 SSMTGGDSPLTARTQRLERVAQALAHSQEELRRLV 59
S + R + + LA ++ +L+
Sbjct: 65 PSTPPHE-----RAAVIAAAVKMLAERKDLFTKLL 94
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A
{Lactobacillus reuteri}
Length = 223
Score = 23.4 bits (51), Expect = 5.3
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 36 ARTQ--RLERVAQALAHSQEELRRLVKY 61
ART R ER L ++ + ++ +
Sbjct: 162 ARTITRRAERQIVQLMREEQINQDVLIF 189
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain,
anti parallel coiled coil, SMC proteins; 3.0A
{Thermotoga maritima} SCOP: d.215.1.1
Length = 213
Score = 23.4 bits (51), Expect = 5.3
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 22 EAGSSMTGG----DSPLTARTQRLERVAQALAHSQEEL 55
++TGG S + R +L+ + Q + ++ ++
Sbjct: 176 SGRGAITGGREERSSNVFERRIKLKHLEQEMEETERQI 213
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator
protein; C-DI-GMP, ggdef, leucine zipper, signaling
protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1}
PDB: 3i5b_A*
Length = 206
Score = 23.3 bits (51), Expect = 5.5
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 37 RTQRLERVAQALAHSQEELRRL 58
R ++LE + L L
Sbjct: 1 RMKQLEDKVEELLSKNYHLENE 22
Score = 22.9 bits (50), Expect = 7.3
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 34 LTARTQRLERVAQALAHSQEELRRL 58
L + + L L + L++L
Sbjct: 5 LEDKVEELLSKNYHLENEVARLKKL 29
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family,
PFL_5859, structural genomics, PSI-2, structure
initiative; 1.90A {Pseudomonas fluorescens}
Length = 434
Score = 23.4 bits (51), Expect = 5.7
Identities = 9/41 (21%), Positives = 11/41 (26%), Gaps = 3/41 (7%)
Query: 23 AGSSMTGGD--SPLTARTQ-RLERVAQALAHSQEELRRLVK 60
S T P Q R E L Q+ +K
Sbjct: 299 VYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDVFAEYLK 339
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A
{Bacillus cereus} PDB: 3ke5_A*
Length = 213
Score = 22.6 bits (49), Expect = 9.2
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 36 ARTQ--RLERVAQALAHSQEELRRLVKY 61
ART R ER +L + ++KY
Sbjct: 144 ARTVVRRAERSIVSLQKEVKINEVVLKY 171
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; 1.60A {Bacillus halodurans}
Length = 208
Score = 22.6 bits (49), Expect = 9.4
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 36 ARTQ--RLERVAQALAHSQEELRRLVKY 61
RT R ER L E ++KY
Sbjct: 138 CRTIARRAERYVVRLQQEGEINPIVLKY 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.126 0.325
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 844,643
Number of extensions: 35701
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 19
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.8 bits)