RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6473
         (61 letters)



>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 446

 Score = 27.6 bits (60), Expect = 0.067
 Identities = 6/32 (18%), Positives = 15/32 (46%)

Query: 28 TGGDSPLTARTQRLERVAQALAHSQEELRRLV 59
          +G    L  R Q+LE + + +  + + +   +
Sbjct: 15 SGKTRSLQFRIQQLEALQRMINENLKSISGAL 46


>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
          glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
          Thermoproteus tenax [TaxId: 2271]}
          Length = 499

 Score = 24.9 bits (53), Expect = 0.67
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 31 DSPLTARTQRLERVAQALAHSQEELRRLV 59
          D P T R   L + A  +  + +    ++
Sbjct: 71 DMPGTERLAVLRKAADIIERNLDVFAEVL 99


>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
          {Streptococcus mutans [TaxId: 1309]}
          Length = 474

 Score = 24.5 bits (52), Expect = 0.86
 Identities = 6/30 (20%), Positives = 12/30 (40%)

Query: 30 GDSPLTARTQRLERVAQALAHSQEELRRLV 59
                 R   L +VA  L   +E++  ++
Sbjct: 56 RALSYIERAAYLHKVADILMRDKEKIGAIL 85


>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase
          YdcW {Escherichia coli [TaxId: 562]}
          Length = 474

 Score = 24.4 bits (52), Expect = 1.1
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 30 GDSPLTARTQRLERVAQALAHSQEELRRLV 59
          G +    R + L ++A  +  + +    L 
Sbjct: 56 GQTTPKVRAECLLKLADVIEENGQVFAELE 85


>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
           phosphofructokinase {Lyme disease spirochete (Borrelia
           burgdorferi) [TaxId: 139]}
          Length = 550

 Score = 23.9 bits (51), Expect = 1.5
 Identities = 6/34 (17%), Positives = 14/34 (41%)

Query: 9   FISETIMQLNEEDEAGSSMTGGDSPLTARTQRLE 42
            +    ++L E        TGG   +++   ++E
Sbjct: 114 LLENDKIELTESLINSYRNTGGFDIVSSGRTKIE 147


>d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 185

 Score = 23.0 bits (49), Expect = 2.6
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 34 LTARTQRLERVAQALAHSQEELRRLVK 60
          L  R +  + +  ALAH  + +  L+ 
Sbjct: 16 LARRARDADDLFGALAHPDDGIAALIP 42


>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh
           {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
          Length = 138

 Score = 23.0 bits (49), Expect = 3.0
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 26  SMTGG--DSPLTARTQRLERVAQALAHSQEELRRLVK 60
           SMT    ++P      R+ R+A+      EE+R L++
Sbjct: 89  SMTYKELENPNIIDKSRMRRIAEGSGLEVEEVRELLE 125


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.126    0.325 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 187,797
Number of extensions: 5750
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 14
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.2 bits)