BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6474
         (381 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RPA|A Chain A, Three-Dimensional Structure Of Rat Acid Phosphatase In
           Complex With L(+) Tartrate
 pdb|1RPT|A Chain A, Crystal Structures Of Rat Acid Phosphatase Complexed With
           The Transitions State Analogs Vanadate And Molybdate:
           Implications For The Reaction Mechanism
          Length = 342

 Score =  201 bits (512), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 184/346 (53%), Gaps = 15/346 (4%)

Query: 31  LRLIHVIFRHGHRTPADTYPNDPYAKHSFEPFGWGQLTNVGKRAQFAQGEFLRRPYDSFL 90
           L+ + ++FRHG R P +T+PNDP  + S+ P G+GQLT  G    +  G ++RR Y  FL
Sbjct: 3   LKFVTLVFRHGDRGPIETFPNDPIKESSW-PQGFGQLTKWGMGQHYELGSYIRRRYGRFL 61

Query: 91  GDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKGDQVWNPNLLWQPIPLNYETMKYDRL 150
            + Y  D + ++ TDVDRT MS M  LA LFPP+G+ +WNP LLWQPIP++  ++  DRL
Sbjct: 62  NNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGNSIWNPRLLWQPIPVHTVSLSEDRL 121

Query: 151 L-LGRYPCPRYQEELDNVFNSPEVRAILEANKNLLDYASKESGMPIVTPDDAQS-LYSTL 208
           L L    CPR+QE       S E    L+  K+ +D     SG       +  S LY  L
Sbjct: 122 LYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLSGFEDQDLFEIWSRLYDPL 181

Query: 209 KAERELGLTLPAWTNAIFPDPLSKITAQSFVINAMTPVLQ------RLKGGFLLKKIIED 262
             E     TLP W      D ++K+   S +       +       RL+GG L+ +I+++
Sbjct: 182 YCESVHNFTLPTWATE---DAMTKLKELSELSLLSLYGIHKQKEKSRLQGGVLVNEILKN 238

Query: 263 TNDKLSGRTKMKMFVYGAHDSTIANFLLTLGVWDMQIPEYNSLIILEVHQLQPGRHGIRV 322
                  +   K+ +Y AHD+T++   + L V++  +P Y S  I+E++Q   G H + +
Sbjct: 239 MKLATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIMELYQ-DNGGHFVEM 297

Query: 323 FLRN-TTSEPYLLQIPGCSKICPWENFVSLTSSKIPVRSYDEECQA 367
           + RN T +EPY L +PGC+  CP E F  L    IP + +  EC  
Sbjct: 298 YYRNETQNEPYPLTLPGCTHSCPLEKFAELLDPVIP-QDWATECMG 342


>pdb|1ND5|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
           Complex With A Phosphate Ion And
           Alpha-Benzylaminobenzylphosphonic Acid Update The
           Mechanistic Picture And Offer New Insights Into
           Inhibitor Design
 pdb|1ND5|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
           Complex With A Phosphate Ion And
           Alpha-Benzylaminobenzylphosphonic Acid Update The
           Mechanistic Picture And Offer New Insights Into
           Inhibitor Design
 pdb|1ND5|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
           Complex With A Phosphate Ion And
           Alpha-Benzylaminobenzylphosphonic Acid Update The
           Mechanistic Picture And Offer New Insights Into
           Inhibitor Design
 pdb|1ND5|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
           Complex With A Phosphate Ion And
           Alpha-Benzylaminobenzylphosphonic Acid Update The
           Mechanistic Picture And Offer New Insights Into
           Inhibitor Design
 pdb|1ND6|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
           Complex With A Phosphate Ion And
           Alpha-Benzylaminobenzylphosphonic Acid Update The
           Mechanistic Picture And Offer New Insights Into
           Inhibitor Design
 pdb|1ND6|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
           Complex With A Phosphate Ion And
           Alpha-Benzylaminobenzylphosphonic Acid Update The
           Mechanistic Picture And Offer New Insights Into
           Inhibitor Design
 pdb|1ND6|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
           Complex With A Phosphate Ion And
           Alpha-Benzylaminobenzylphosphonic Acid Update The
           Mechanistic Picture And Offer New Insights Into
           Inhibitor Design
 pdb|1ND6|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
           Complex With A Phosphate Ion And
           Alpha-Benzylaminobenzylphosphonic Acid Update The
           Mechanistic Picture And Offer New Insights Into
           Inhibitor Design
          Length = 354

 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 182/354 (51%), Gaps = 27/354 (7%)

Query: 31  LRLIHVIFRHGHRTPADTYPNDPYAKHSFEPFGWGQLTNVGKRAQFAQGEFLRRPYDSFL 90
           L+ + ++FRHG R+P DT+P DP  + S+ P G+GQLT +G    +  GE++R+ Y  FL
Sbjct: 3   LKFVTLVFRHGDRSPIDTFPTDPIKESSW-PQGFGQLTQLGMEQHYELGEYIRKRYRKFL 61

Query: 91  GDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKGDQVWNPNLLWQPIPLNYETMKYDRL 150
            + Y  + + ++ TDVDRT MS M  LA LFPP+G  +WNP LLWQPIP++   +  D+L
Sbjct: 62  NESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQL 121

Query: 151 L-LGRYPCPRYQEELDNVFNSPEVRAILEANKNLLDYASKESGMPIVTPDDAQSL----- 204
           L L    CPR+QE       S E +  L   K+ +    K SG+        Q L     
Sbjct: 122 LYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGL------HGQDLFGIWS 175

Query: 205 --YSTLKAERELGLTLPAWTNAIFPDPLSKITAQSFVINAMTPVLQ------RLKGGFLL 256
             Y  L  E     TLP+W      D ++K+   S +       +       RL+GG L+
Sbjct: 176 KVYDPLYCESVHNFTLPSWATE---DTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLV 232

Query: 257 KKIIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTLGVWDMQIPEYNSLIILEVHQLQPG 316
            +I+          +  K+ +Y AHD+T++   + L V++  +P Y S  + E++  + G
Sbjct: 233 NEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELY-FEKG 291

Query: 317 RHGIRVFLRNTTS-EPYLLQIPGCSKICPWENFVSLTSSKIPVRSYDEECQALN 369
            + + ++ RN T  EPY L +PGCS  CP E F  L    IP + +  EC   N
Sbjct: 292 EYFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIP-QDWSTECMTTN 344


>pdb|2HPA|A Chain A, Structural Origins Of L(+)-Tartrate Inhibition Of Human
           Prostatic Acid Phosphatase
 pdb|2HPA|B Chain B, Structural Origins Of L(+)-Tartrate Inhibition Of Human
           Prostatic Acid Phosphatase
 pdb|2HPA|C Chain C, Structural Origins Of L(+)-Tartrate Inhibition Of Human
           Prostatic Acid Phosphatase
 pdb|2HPA|D Chain D, Structural Origins Of L(+)-Tartrate Inhibition Of Human
           Prostatic Acid Phosphatase
 pdb|1CVI|A Chain A, Crystal Structure Of Human Prostatic Acid Phosphatase
 pdb|1CVI|B Chain B, Crystal Structure Of Human Prostatic Acid Phosphatase
 pdb|1CVI|C Chain C, Crystal Structure Of Human Prostatic Acid Phosphatase
 pdb|1CVI|D Chain D, Crystal Structure Of Human Prostatic Acid Phosphatase
          Length = 342

 Score =  194 bits (493), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 120/350 (34%), Positives = 181/350 (51%), Gaps = 27/350 (7%)

Query: 31  LRLIHVIFRHGHRTPADTYPNDPYAKHSFEPFGWGQLTNVGKRAQFAQGEFLRRPYDSFL 90
           L+ + ++FRHG R+P DT+P DP  + S+ P G+GQLT +G    +  GE++R+ Y  FL
Sbjct: 3   LKFVTLVFRHGDRSPIDTFPTDPIKESSW-PQGFGQLTQLGMEQHYELGEYIRKRYRKFL 61

Query: 91  GDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKGDQVWNPNLLWQPIPLNYETMKYDRL 150
            + Y  + + ++ TDVDRT MS M  LA LFPP+G  +WNP LLWQPIP++   +  D+L
Sbjct: 62  NESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQL 121

Query: 151 L-LGRYPCPRYQEELDNVFNSPEVRAILEANKNLLDYASKESGMPIVTPDDAQSL----- 204
           L L    CPR+QE       S E +  L   K+ +    K SG+        Q L     
Sbjct: 122 LYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGL------HGQDLFGIWS 175

Query: 205 --YSTLKAERELGLTLPAWTNAIFPDPLSKITAQSFVINAMTPVLQ------RLKGGFLL 256
             Y  L  E     TLP+W      D ++K+   S +       +       RL+GG L+
Sbjct: 176 KVYDPLYCESVHNFTLPSWATE---DTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLV 232

Query: 257 KKIIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTLGVWDMQIPEYNSLIILEVHQLQPG 316
            +I+          +  K+ +Y AHD+T++   + L V++  +P Y S  + E++  + G
Sbjct: 233 NEILNHMKRATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELY-FEKG 291

Query: 317 RHGIRVFLRNTTS-EPYLLQIPGCSKICPWENFVSLTSSKIPVRSYDEEC 365
            + + ++ RN T  EPY L +PGCS  CP E F  L    IP + +  EC
Sbjct: 292 EYFVEMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGPVIP-QDWSTEC 340


>pdb|3IT0|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With Phosphate
 pdb|3IT0|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With Phosphate
 pdb|3IT1|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With L(+)-Tartrate
 pdb|3IT1|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Complexed With L(+)-Tartrate
 pdb|3IT2|A Chain A, Crystal Structure Of Ligand-Free Francisella Tularensis
           Histidine Acid Phosphatase
 pdb|3IT2|B Chain B, Crystal Structure Of Ligand-Free Francisella Tularensis
           Histidine Acid Phosphatase
          Length = 342

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 131/296 (44%), Gaps = 26/296 (8%)

Query: 31  LRLIHVIFRHGHRTPADTYPNDPYAKHSFEPFGWG----QLTNVGKRAQFAQGEFLRRPY 86
           L  + +I RHG R P     N  Y+        WG    +LT +G   ++  G  LR+ Y
Sbjct: 8   LIFVSMITRHGDRAPFANIENANYS--------WGTELSELTPIGMNQEYNLGLQLRKRY 59

Query: 87  -DSF--LGDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPK-----GDQVWNPNLLWQPI 138
            D F  L + Y    + V  +  +RT +S    L GL+P       GD        +QPI
Sbjct: 60  IDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKDRFQPI 119

Query: 139 PLNYETMKYDRLLLGRYPCPRYQEELDN-VFNSPEVR-AILEANKNLLDYASKESGMPIV 196
           P+   T+  D  L+ ++P  +Y   L   V+NSPE +    EA  N   +  +  G  I 
Sbjct: 120 PI--MTLSADSRLI-QFPYEQYLAVLKKYVYNSPEWQNKTKEAAPNFAKW-QQILGNRIS 175

Query: 197 TPDDAQSLYSTLKAERELGLTLPAWTNAIFPDPLSKITAQSFVINAMTPVLQRLKGGFLL 256
             +D  ++   L   +  G  LP   +    D +  +T         +  +  + GG L 
Sbjct: 176 GLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQFKSQKVSYIMGGKLT 235

Query: 257 KKIIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTLGVWDMQIPEYNSLIILEVHQ 312
            ++IED N+ ++G++K KM  Y  HD T+   + TLGV     P Y S + +E+++
Sbjct: 236 NRMIEDLNNAVNGKSKYKMTYYSGHDLTLLEVMGTLGVPLDTAPGYASNLEMELYK 291


>pdb|3IT3|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
 pdb|3IT3|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
          Length = 342

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 130/296 (43%), Gaps = 26/296 (8%)

Query: 31  LRLIHVIFRHGHRTPADTYPNDPYAKHSFEPFGWG----QLTNVGKRAQFAQGEFLRRPY 86
           L  + +I RHG R P     N  Y+        WG    +LT +G   ++  G  LR+ Y
Sbjct: 8   LIFVSMITRHGDRAPFANIENANYS--------WGTELSELTPIGMNQEYNLGLQLRKRY 59

Query: 87  -DSF--LGDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPK-----GDQVWNPNLLWQPI 138
            D F  L + Y    + V  +  +RT +S    L GL+P       GD        +QPI
Sbjct: 60  IDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKDRFQPI 119

Query: 139 PLNYETMKYDRLLLGRYPCPRYQEELDN-VFNSPEVR-AILEANKNLLDYASKESGMPIV 196
           P+   T+  D  L+ ++P  +Y   L   V+NSPE +    EA  N   +  +  G  I 
Sbjct: 120 PI--MTLSADSRLI-QFPYEQYLAVLKKYVYNSPEWQNKTKEAAPNFAKW-QQILGNRIS 175

Query: 197 TPDDAQSLYSTLKAERELGLTLPAWTNAIFPDPLSKITAQSFVINAMTPVLQRLKGGFLL 256
             +D  ++   L   +  G  LP   +    D +  +T         +  +  + GG L 
Sbjct: 176 GLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQFKSQKVSYIMGGKLT 235

Query: 257 KKIIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTLGVWDMQIPEYNSLIILEVHQ 312
            ++IED N+ ++G++K KM  Y  H  T+   + TLGV     P Y S + +E+++
Sbjct: 236 NRMIEDLNNAVNGKSKYKMTYYSGHALTLLEVMGTLGVPLDTAPGYASNLEMELYK 291


>pdb|4E3W|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Cryoprotected With Proline
 pdb|4E3W|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
           Phosphatase Cryoprotected With Proline
          Length = 342

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 26/296 (8%)

Query: 31  LRLIHVIFRHGHRTPADTYPNDPYAKHSFEPFGWG----QLTNVGKRAQFAQGEFLRRPY 86
           L  + +I R+G R P     N  Y+        WG    +LT +G   ++  G  LR+ Y
Sbjct: 8   LIFVSMITRNGDRAPFANIENANYS--------WGTELSELTPIGMNQEYNLGLQLRKRY 59

Query: 87  -DSF--LGDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPK-----GDQVWNPNLLWQPI 138
            D F  L + Y    + V  +  +RT +S    L GL+P       GD        +QPI
Sbjct: 60  IDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKDRFQPI 119

Query: 139 PLNYETMKYDRLLLGRYPCPRYQEELDN-VFNSPEVR-AILEANKNLLDYASKESGMPIV 196
           P+   T+  D  L+ ++P  +Y   L   V+NSPE +    EA  N   +  +  G  I 
Sbjct: 120 PI--MTLSADSRLI-QFPYEQYLAVLKKYVYNSPEWQNKTKEAAPNFAKW-QQILGNRIS 175

Query: 197 TPDDAQSLYSTLKAERELGLTLPAWTNAIFPDPLSKITAQSFVINAMTPVLQRLKGGFLL 256
             +D  ++   L   +  G  LP   +    D +  +T         +  +  + GG L 
Sbjct: 176 GLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQFKSQKVSYIMGGKLT 235

Query: 257 KKIIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTLGVWDMQIPEYNSLIILEVHQ 312
            ++IED N+ ++G++K KM  Y  H  T+   + TLGV     P Y S + +E+++
Sbjct: 236 NRMIEDLNNAVNGKSKYKMTYYSGHALTLLEVMGTLGVPLDTAPGYASNLEMELYK 291


>pdb|2DUO|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN, CA2+-
           Bound Form
 pdb|2DUO|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN, CA2+-
           Bound Form
 pdb|2DUP|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
           METAL-Free Form
 pdb|2DUP|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
           METAL-Free Form
 pdb|2DUQ|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
           Ca2+MAN-Bound Form
 pdb|2DUQ|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
           Ca2+MAN-Bound Form
 pdb|2DUR|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
           CA2+MAN2-Bound Form
 pdb|2DUR|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
           CA2+MAN2-Bound Form
 pdb|2E6V|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
           Ca2+MAN3GLCNAC-Bound Form
 pdb|2E6V|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
           Ca2+MAN3GLCNAC-Bound Form
 pdb|2E6V|C Chain C, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
           Ca2+MAN3GLCNAC-Bound Form
 pdb|2E6V|D Chain D, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
           Ca2+MAN3GLCNAC-Bound Form
 pdb|2E6V|E Chain E, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
           Ca2+MAN3GLCNAC-Bound Form
          Length = 253

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 40  HGHRTPADTYPNDPYAKHSFEPFGWGQLTNV---------GKRAQFA--QGEFLRRPYDS 88
           HG     DTYPND   +  F P+    + N          G+  + A    +F  R +D+
Sbjct: 107 HGLAIFLDTYPNDETTERVF-PYISVMVNNGSLSYDHSKDGRWTELAGCTADFRNRDHDT 165

Query: 89  FLGDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKG 125
           FL  RYS   L V     D+ +    + + G+  P G
Sbjct: 166 FLAVRYSRGRLTVMTDLEDKNEWKNCIDITGVRLPTG 202


>pdb|2L0Y|A Chain A, Complex Hmia40-Hcox17
          Length = 146

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 15/106 (14%)

Query: 27  QDGTLRLIHVIFRHGHRTPADTY-----PNDPYAKHSF-EPFG---WGQLTNVGKRAQFA 77
           Q+G  R+I V  +  H TP+        PNDPY +H    P G   W     +G  A   
Sbjct: 10  QEGKDRIIFVT-KEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNSPC-LGGMASGP 67

Query: 78  QGEFLRRPYDSFLGDRYSPDYLK-VQCTDVDRTKMSTMLFLAGLFP 122
            GE  +  +  F    YS + +K   C D  R     M     L+P
Sbjct: 68  CGEQFKSAFSCF---HYSTEEIKGSDCVDQFRAMQECMQKYPDLYP 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,536,876
Number of Sequences: 62578
Number of extensions: 486729
Number of successful extensions: 1349
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1324
Number of HSP's gapped (non-prelim): 14
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)