RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6474
(381 letters)
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 314 bits (805), Expect = e-105
Identities = 119/354 (33%), Positives = 180/354 (50%), Gaps = 9/354 (2%)
Query: 31 LRLIHVIFRHGHRTPADTYPNDPYAKHSFEPFGWGQLTNVGKRAQFAQGEFLRRPYDSFL 90
L+ + ++FRHG R+P DT+P DP K S P G+GQLT +G + GE++R+ Y FL
Sbjct: 3 LKFVTLVFRHGDRSPIDTFPTDPI-KESSWPQGFGQLTQLGMEQHYELGEYIRKRYRKFL 61
Query: 91 GDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKGDQVWNPNLLWQPIPLNYETMKYD-R 149
+ Y + + ++ TDVDRT MS M LA LFPP+G +WNP LLWQPIP++ + D
Sbjct: 62 NESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQL 121
Query: 150 LLLGRYPCPRYQEELDNVFNSPEVRAILEANKNLLDYASKESGMPIVTPDD-AQSLYSTL 208
L L CPR+QE S E + L K+ + K SG+ +Y L
Sbjct: 122 LYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPL 181
Query: 209 KAERELGLTLPAWTNAIFPDPLSKITAQSFV---INAMTPVLQRLKGGFLLKKIIEDTND 265
E TLP+W L +++ S + RL+GG L+ +I+
Sbjct: 182 YCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVNEILNHMKR 241
Query: 266 KLSGRTKMKMFVYGAHDSTIANFLLTLGVWDMQIPEYNSLIILEVHQLQPGRHGIRVFLR 325
+ K+ +Y AHD+T++ + L V++ +P Y S + E++ + G + + ++ R
Sbjct: 242 ATQIPSYKKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHLTELYF-EKGEYFVEMYYR 300
Query: 326 N-TTSEPYLLQIPGCSKICPWENFVSLTSSKIPVRSYDEECQALNPNFVYRESS 378
N T EPY L +PGCS CP E F L IP + + EC N + +S+
Sbjct: 301 NETQHEPYPLMLPGCSPSCPLERFAELVGPVIP-QDWSTECMTTNSHQGTEDST 353
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella
tularensis subsp} PDB: 2glc_A 2glb_A 2gla_A 3it0_A*
3it1_A* 3it2_A 2p36_A*
Length = 342
Score = 285 bits (729), Expect = 2e-94
Identities = 73/351 (20%), Positives = 129/351 (36%), Gaps = 20/351 (5%)
Query: 27 QDGTLRLIHVIFRHGHRTPADTYPNDPYAKHSFEPFGWGQLTNVGKRAQFAQGEFLRRPY 86
L + +I RHG R P N Y+ +LT +G ++ G LR+ Y
Sbjct: 4 YSSKLIFVSMITRHGDRAPFANIENANYSW----GTELSELTPIGMNQEYNLGLQLRKRY 59
Query: 87 DSFLG---DRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKGDQVWN-----PNLLWQPI 138
G + Y + V + +RT +S L GL+P + +QPI
Sbjct: 60 IDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDPAIKDRFQPI 119
Query: 139 PLNYETMKYDRLLLGRYPCPRYQEELDNVFNSPEVRAILEANKNLLDYASKESGMPIVTP 198
P T+ D L+ V+NSPE + + + G I
Sbjct: 120 P--IMTLSADSRLIQFPYEQYLAVLKKYVYNSPEWQNKTKEAAPNFAKWQQILGNRISGL 177
Query: 199 DDAQSLYSTLKAERELGLTLPAWTNAIFPDPLSKITAQSFVINAMTPVLQRLKGGFLLKK 258
+D ++ L + G LP + D + +T + + + GG L +
Sbjct: 178 NDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQFKSQKVSYIMGGKLTNR 237
Query: 259 IIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTLGVWDMQIPEYNSLIILEVHQLQPGRH 318
+IED N+ ++G++K KM Y H T+ + TLGV P Y S + +E+++ +
Sbjct: 238 MIEDLNNAVNGKSKYKMTYYSGHALTLLEVMGTLGVPLDTAPGYASNLEMELYK-DGDIY 296
Query: 319 GIRVFLRNTTSEPYLLQIPGCSKICPWENFVSLTSSKIPVRSYDEECQALN 369
+++ + L I + C + S + + +
Sbjct: 297 TVKLRYNG---KYVKLPIMDKNNSCSLDALNKYMQSINE--KFQKHHHHHH 342
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase,
phytate binding site, hydrolase; HET: IHP; 1.88A
{Enterobacter cloacae} PDB: 1nt4_A*
Length = 398
Score = 196 bits (499), Expect = 2e-59
Identities = 54/386 (13%), Positives = 113/386 (29%), Gaps = 60/386 (15%)
Query: 30 TLRLIHVIFRHGHRTPADTYPNDPYA----KHSFEPFGWGQLTNVGKRAQFAQGEFLRRP 85
L + ++ R R P + + GQLT G + G ++R
Sbjct: 6 QLEQVLIMSRANLRAPLANNGSVLEQSTPKQWPEWEVPGGQLTTKGGVLEVYMGHYMREW 65
Query: 86 YDS----FLGDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKGDQVWNP------NLLW 135
G+ + D + + RT + F+ G FP V + + +
Sbjct: 66 LAQQGMVKTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCDVPVHHQEKMGTMDPTF 125
Query: 136 QPIPLNYETMKYDRLLLGRYPCPRYQ---------EELDNVFNSPEVR----AILEANKN 182
P+ + ++ L + E++ N +SP + L K+
Sbjct: 126 NPVITDNSPEFREKALKAMETERQKMQLTESYKLLEQMTNYADSPSCKEKKVCSLADAKD 185
Query: 183 LLDYASKESGMPIVTPDDAQSLYSTLKAERELGLTLP--AWTNAIFPDPLSKITAQ---S 237
++ SL + G AW ++
Sbjct: 186 TFSADYEKEPGVSGPLKVGNSLVDAFTLQYYEGFPADQVAWGEIKTDQQWRVLSKLKNGY 245
Query: 238 FVINAMTPVLQRLKGGFLLKKIIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTLGVWDM 297
+ + + L+K I + + + K+ + HDS IA+ L L
Sbjct: 246 QDSLFTSTEVAQNVAKPLVKYIDKTLVTEQA--KAPKITLLVGHDSNIASLLTALDFKPY 303
Query: 298 QIPE------YNSLIILEVHQLQPG-RHGIRVFLRNTTSE---------------PYLLQ 335
Q+ + I+ + + + +++ +SE L+
Sbjct: 304 QLHDQQERTPIGGKIVFQRWHDKNANQELMKIEYVYQSSEQLRNASVLSLQSPAQRVTLE 363
Query: 336 IPGCSK----ICPWENFVSLTSSKIP 357
+ GC CP + F ++ ++
Sbjct: 364 LKGCPVDANGFCPVDKFNAVMNNAAK 389
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 195 bits (495), Expect = 2e-58
Identities = 65/418 (15%), Positives = 129/418 (30%), Gaps = 72/418 (17%)
Query: 20 TVTSSDEQDGTLRLIHVIFRHGHRTPADTYP----NDPYAKHSFEPFGWGQLTNVGKRAQ 75
+ +D L + + RHG R P + G+LT G A
Sbjct: 5 INSDPPPRDWQLEKVVELSRHGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAV 64
Query: 76 FAQGEFLRRPYDS---FLGDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKGDQVWNPN 132
+G + Y + + + V+ + + RT+ + + G FP G + N
Sbjct: 65 VNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYAN 124
Query: 133 LLWQPI--PLNYETMKYDRLLLGRYPCPRYQEELDNVFNSPEVRAILEANKNLLD----- 185
P+ + + D P + + + + R L LL
Sbjct: 125 GDADPLFQTDKFAATQTD-------PARQLAAVKEKAGDLAQRRQALAPTIQLLKQAVCQ 177
Query: 186 --------------YASKESGMPIVTPDDAQSLYSTLKAERELGLTLP--AWTNAIFPD- 228
SK I ++ TL+ L L AW
Sbjct: 178 ADKPCPIFDTPWRVEQSKSGKTTISGLSVMANMVETLRLGWSENLPLSQLAWGKIAQASQ 237
Query: 229 --PLSKITAQSFVINAMTPVLQRLKGGFLLKKIIEDTNDKLSGRTKMKMFVYGAHDSTIA 286
L + +++ ++ + +G LL +++ + S ++ + AHD+ IA
Sbjct: 238 ITALLPLLTENYDLSNDVLYTAQKRGSVLLNAMLDGVKPEAS--PNVRWLLLVAHDTNIA 295
Query: 287 NFLLTLGVWDMQIPEYN-------SLIILEVHQ-LQPGRHGIRVFLRNTTSE-------- 330
+ + Q+P Y+ S ++LE + + G +RV+ + +
Sbjct: 296 MVRTLMN-FSWQLPGYSRGNIPPGSSLVLERWRDAKSGERYLRVYFQAQGLDDLRRLQTP 354
Query: 331 -------PYLLQIPGCSKI-----CPWENFVSLTSSKIPVRSYDEECQALNPNFVYRE 376
+ PGC + CP++ ++ +I R + P
Sbjct: 355 DAQHPMLRQEWRQPGCRQTDVGTLCPFQAAITALGQRID-RPSAPAVAMVLPKLAAAL 411
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
1dkm_A 1dkn_A 1dko_A 1dkl_A
Length = 410
Score = 187 bits (476), Expect = 8e-56
Identities = 65/405 (16%), Positives = 112/405 (27%), Gaps = 75/405 (18%)
Query: 26 EQDGTLRLIHVIFRHGHRTPADTYP----NDPYAKHSFEPFGWGQLTNVGKRAQFAQGEF 81
E + L + ++ R G R P P A ++ P G LT G G +
Sbjct: 3 EPELKLESVVIVSRAGVRAPTKATQLMQDVTPDAWPTW-PVKLGWLTPRGGELIAYLGHY 61
Query: 82 LRRPYDSF----LGDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKGDQV------WNP 131
R+ + + + +RT+ + F AGL P V +P
Sbjct: 62 QRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQTDTSSP 121
Query: 132 NLLWQPIPLNY-------------ETMKYDRLLLGRYPCPRYQEELDNVFNSPEVRAILE 178
+ L+ P+ + ++ EL+ V N P+ L+
Sbjct: 122 DPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFR-ELERVLNFPQSNLCLK 180
Query: 179 ANK--------NLLDYASKESGMPIVTP---DDAQSLYSTLKAERELGLTLPAWTNAIFP 227
K L K S + A L ++ G+ P W
Sbjct: 181 REKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDS 240
Query: 228 DPLSKITAQ---SFVINAMTPVLQRLKGGFLLKKIIEDTNDKLSGRT------KMKMFVY 278
+ + + F + TP + R + LL I + +
Sbjct: 241 HQWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFI 300
Query: 279 GAHDSTIANFLLTLGV------WDMQIPEYNSLIILEVHQLQPGRHGIRVFLRNTTSE-- 330
HD+ +AN L + P L+ +L I+V L T +
Sbjct: 301 AGHDTNLANLGGALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQM 360
Query: 331 -------------PYLLQIPGCS-----KICPWENFVSLTSSKIP 357
L + GC +C F + +
Sbjct: 361 RDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARI 405
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Length = 458
Score = 132 bits (333), Expect = 6e-35
Identities = 62/401 (15%), Positives = 110/401 (27%), Gaps = 77/401 (19%)
Query: 30 TLRLIHVIFRHGHRTPAD------------------------TYPNDPYAKHSFE----- 60
TL + + RHG R P+ + ND Y +
Sbjct: 60 TLEQVQLFSRHGERYPSTGSGKKYKAVYEKLMSYNGTFKGELAFLNDDYEYFVPDSVYLE 119
Query: 61 ---PFGWGQLTNVGKRAQFAQGEFLRRPYDSFLGDRYSPDYLKVQCTDVDRTKMSTMLFL 117
G G R Y + L V ++ R ++ F
Sbjct: 120 KETSPKNSDSIYAGTTDAMKHGIAFRTKYGELFDTNDT---LPVFTSNSGRVYQTSQYFA 176
Query: 118 AGLFPPKGDQVWNPNLLWQPIPLNYETMKYDRLLLGRYPCPRYQEELDNVFNSPEVRAIL 177
G N + I + L R C Y E + L
Sbjct: 177 RGFMGDDF---SNDTVKTNIIS--EDADMGANSLTPRDGCFNYNENANTAIVDEYTTEYL 231
Query: 178 EANKNLLDYASKESGMPIVTPDDAQSLYSTLKAERELGLTLP---AWTNAIFPDPLSKIT 234
N + +T DD +L+ E + P +TN F +
Sbjct: 232 TKALNRF---KASNPGLNITEDDVSNLFGYCAYELNVKGASPMCDIFTNEEFIQYSYSVD 288
Query: 235 AQSFVINAMTPVLQRLKGGFLLKKIIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTLGV 294
+ N+ + R+ G LL +E N + K+++ HD+ I F +G+
Sbjct: 289 LDDYYSNSAGNNMTRVIGSTLLNASLELLNHDKNEN---KIWLSFTHDTDIEIFHSAIGI 345
Query: 295 WDMQIP------------------EYNSLIILEVHQLQPGRHGIRVFLRNTTSEPYLLQI 336
+ I+E + + +R + + + I
Sbjct: 346 LIPDEDLPVDYTPFPSPYSHVGITPQGARTIIEKYACGNESY-VRYVINDAV-----IPI 399
Query: 337 PGCS----KICPWENFVSLTSSKIPVRSYDEECQALNPNFV 373
CS C ++ + ++ +Y E+C N + V
Sbjct: 400 KKCSSGPGFSCNLNDYNDYVAERVAGTNYVEQCGNNNASAV 440
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle,
glycoprotein phosphohistidine, hydrolase; HET: NEP NAG;
1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB:
1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Length = 442
Score = 132 bits (332), Expect = 9e-35
Identities = 59/402 (14%), Positives = 110/402 (27%), Gaps = 78/402 (19%)
Query: 30 TLRLIHVIFRHGHRTPAD-----------------TYPNDPYA--KHSFEPFGWGQLTNV 70
+ L+ V+ RHG R P T +A K G LT
Sbjct: 48 RITLVQVLSRHGARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKTYNYTLGADDLTPF 107
Query: 71 GKRAQFAQGEFLRRPYDSFLGDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKGDQVWN 130
G++ G + Y ++ + DR S F+ G K
Sbjct: 108 GEQQLVNSGIKFYQRY----KALARSVVPFIRASGSDRVIASGEKFIEGFQQAKLADPGA 163
Query: 131 PNLLWQPIPLNYETMKYDRLLLGRYPCPRYQEELDNVFNSPEVRAILEANKNLLDYASKE 190
N I + + L C +++ + A+ ++ A K
Sbjct: 164 TNRAAPAISVIIPESETFNNTLDHGVCTKFEASQLGDEVAANFTALF--APDIRARAEKH 221
Query: 191 SGMPIVTPDDAQSLYSTLKAE-------------------------RELGLTLPAWTNAI 225
+T +D SL + +L +
Sbjct: 222 LPGVTLTDEDVVSLMDMCSFDTVARTSDASQLSPFCQLFTHNEWKKYNYLQSLGKYYGYG 281
Query: 226 FPDPLSKITAQSFVINAMTPVLQRLKGGFLLKKIIEDTNDKLSGRTKM---KMFVYGAHD 282
+PL F N + + RL + ++ + T M+V +HD
Sbjct: 282 AGNPLGPAQGIGFT-NEL---IARLTRSPVQDHTSTNSTLVSNPATFPLNATMYVDFSHD 337
Query: 283 STIANFLLTLGVWDMQIPEYNSLIILEVH-------QLQP--GRHGIRVFLRNTTSEPY- 332
+++ + LG+++ P + + + P R + EP
Sbjct: 338 NSMVSIFFALGLYNGTEPLSRTSVESAKELDGYSASWVVPFGARAYFETMQCKSEKEPLV 397
Query: 333 -------LLQIPGCSK----ICPWENFVSLTSSKIPVRSYDE 363
++ + GC C +FV S ++ E
Sbjct: 398 RALINDRVVPLHGCDVDKLGRCKLNDFVKGLSWARSGGNWGE 439
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate
phosphohydrolase, 37288-11-2, MYO-inositol hexakis
sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger}
PDB: 3k4p_A* 1ihp_A
Length = 444
Score = 128 bits (323), Expect = 2e-33
Identities = 51/404 (12%), Positives = 102/404 (25%), Gaps = 81/404 (20%)
Query: 30 TLRLIHVIFRHGHRTPAD-----------------TYPNDPYA--KHSFEPFGWGQLTNV 70
+ V+ RHG R P D T + YA K G LT
Sbjct: 49 RVTFAQVLSRHGARYPTDSKGKKYSALIEEIQQNATTFDGKYAFLKTYNYSLGADDLTPF 108
Query: 71 GKRAQFAQGEFLRRPYDSFLGDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKGDQVWN 130
G++ G + Y ++ + R S F+ G K
Sbjct: 109 GEQELVNSGIKFYQRY----ESLTRNIVPFIRSSGSSRVIASGKKFIEGFQSTKLKDPRA 164
Query: 131 PNLLWQPIP-LNYETMKYDRLLLGRYPCPRYQEELDNVFNSPEVRAILEANKNLLDYASK 189
P + L C +++ A ++
Sbjct: 165 QPGQSSPKIDVVISEASSSNNTLDPGTCTVFEDSELADTVEANFTATF--VPSIRQRLEN 222
Query: 190 ESGMPIVTPDDAQSLYSTLKAE----RELGLTLPAWTNAIFPDPLSKI------------ 233
+ +T + L + + L + + D
Sbjct: 223 DLSGVTLTDTEVTYLMDMCSFDTISTSTVDTKLSPFCDLFTHDEWINYDYLQSLKKYYGH 282
Query: 234 -----TAQSFVINAMTPVLQRLKGGFLLKKIIED---TNDKLSGRTKMKMFVYGAHDSTI 285
+ + ++ RL + + + + ++ +HD+ I
Sbjct: 283 GAGNPLGPTQGVGYANELIARLTHSPVHDDTSSNHTLDSSPATFPLNSTLYADFSHDNGI 342
Query: 286 ANFLLTLGVWDMQIPE---------------------YNSLIILEVHQL-QPGRHGIRVF 323
+ L LG+++ P + S + +E+ Q +RV
Sbjct: 343 ISILFALGLYNGTKPLSTTTVENITQTDGFSSAWTVPFASRLYVEMMQCQAEQEPLVRVL 402
Query: 324 LRNTTSEPYLLQIPGCSK----ICPWENFVSLTSSKIPVRSYDE 363
+ + + + GC C ++FV S + E
Sbjct: 403 VNDRV-----VPLHGCPVDALGRCTRDSFVRGLSFARSGGDWAE 441
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase;
HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP:
c.60.1.2
Length = 460
Score = 104 bits (260), Expect = 6e-25
Identities = 50/396 (12%), Positives = 86/396 (21%), Gaps = 82/396 (20%)
Query: 30 TLRLIHVIFRHGHRTPADTYPND----------------------------PYAKHSFEP 61
+ + ++ RHG R P+ + D +
Sbjct: 53 EVDQVIMVKRHGERYPSPSAGKDIEEALAKVYSINTTEYKGDLAFLNDWTYYVPNECYYN 112
Query: 62 FGWGQLTNVGKRAQFAQGEFLRRPYDSFLGDRYSPDYLKVQCTDVDRTKMSTMLFLAGLF 121
G + G + Y + + R + F G F
Sbjct: 113 AETTSGPYAGLLDAYNHGNDYKARYGHLWNGE---TVVPFFSSGYGRVIETARKFGEGFF 169
Query: 122 PPKGDQVWNPNLLWQPIPLNYETMKYDRLLLGRYPCPRYQEELDNVFNSPEVRAILEANK 181
++ N I + L Q D + L K
Sbjct: 170 GYN----YSTNAALNIISESEVMGADS--LTPTCDTDNDQTTCD------NLTYQLPQFK 217
Query: 182 NLLDYASKESGMPIVTPDDAQSLYSTLKAERELGLTLP---AWTNAIFPDPLSKITAQSF 238
+ ++ +T D +L E A+T + +
Sbjct: 218 VAAARLNSQNPGMNLTASDVYNLMVMASFELNARPFSNWINAFTQDEWVSFGYVEDLNYY 277
Query: 239 VINAMTPVLQRLKGGFLLKKIIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTLGVWDMQ 298
G + N +F AHD+ I L LGV
Sbjct: 278 YCAGPGDKNMAAVGAVYANASLTLLNQGPK--EAGSLFFNFAHDTNITPILAALGVLIPN 335
Query: 299 IP------------------EYNSLIILEVHQLQPGRHG-----IRVFLRNTTSEPYLLQ 335
+ +E Q +R+ L L
Sbjct: 336 EDLPLDRVAFGNPYSIGNIVPMGGHLTIERLSCQATALSDEGTYVRLVLNEAV-----LP 390
Query: 336 IPGCSK----ICPWENFVSLTSSKIPVRSYDEECQA 367
C+ CP N+ S+ + +P Y C
Sbjct: 391 FNDCTSGPGYSCPLANYTSILNKNLP--DYTTTCNV 424
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 9e-09
Identities = 87/435 (20%), Positives = 144/435 (33%), Gaps = 140/435 (32%)
Query: 11 LGLLL------FL----LHTVTSS--DEQDGTLRLIHVIFRHGHRTPADTYPNDPYAKHS 58
L L L +L +H + + E D TL + ++ A P+ K S
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT--ARIMAKRPFDKKS 141
Query: 59 FEPFGWGQLTNVGKR-----AQFA-QGE----F--LR---RPYDSFLGD--RYSPDYLKV 101
VG+ A F QG F LR + Y +GD ++S + L
Sbjct: 142 NSAL----FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 102 QCTDVDRTKMSTMLFLAGLFPPKGD-QVW--NPN-------LLWQPI--PL-------NY 142
+ +F GL + W NP+ LL PI PL +Y
Sbjct: 198 LIRTTLDAEK---VFTQGL-----NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 143 E-TMKYDRLLLGRYPCPRYQEELDNVFNSPEVRAILEANKNLLDYASKESGMPIVTPDDA 201
T K LLG P EL ++ ++ L+ + + I D
Sbjct: 250 VVTAK----LLGFTP-----GEL-----RSYLKGATGHSQGLV------TAVAIAETDSW 289
Query: 202 QSLY-STLKAERELGLTLPAWTNA----IFPDP-LSKITAQSFVIN---AMTPVLQRLKG 252
+S + S KA +T+ + +P+ L + + N +P+L +
Sbjct: 290 ESFFVSVRKA-----ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SISN 343
Query: 253 GFL--LKKIIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTLGVWDMQIPEYNSLIILEV 310
++ + TN L ++++ + N +++ G P+ SL L +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK----NLVVS-GP-----PQ--SLYGLNL 391
Query: 311 H-----------QLQ-PGR----HGIRVFLRNTTSEPY---LLQIPGCSKICP--WENFV 349
Q + P FL + P+ LL P I +N V
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLP--VASPFHSHLLV-PASDLINKDLVKNNV 448
Query: 350 SLTSS--KIPVRSYD 362
S + +IPV YD
Sbjct: 449 SFNAKDIQIPV--YD 461
Score = 55.1 bits (132), Expect = 2e-08
Identities = 43/286 (15%), Positives = 84/286 (29%), Gaps = 117/286 (40%)
Query: 47 DTYPNDPYAKHSFEPFGWGQLTNVGKRAQFAQGEFLRRPYDSFLGDRYSPDYLKVQCTDV 106
D Y A+ + RA D+ D Y L D+
Sbjct: 1634 DLYKTSKAAQDVWN------------RA------------DNHFKDTYGFSIL-----DI 1664
Query: 107 DRTKMSTMLFLAGLFPPKGDQVWNPNLLWQPIPLNYETMKYDRLLLGRYPCPRYQEELDN 166
+ G KG + I NY M ++ ++ G+ + +E++
Sbjct: 1665 VINNPVNLTIHFG--GEKG----------KRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 167 -----VFNSPEVR---------AILEANKNLLDYAS----KESGMPIVTPDDAQ----SL 204
F S + A+ L++ A+ K G + P DA SL
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALT-----LMEKAAFEDLKSKG---LIPADATFAGHSL 1764
Query: 205 --YSTLKA---------------ERELGLTLPAWTNAIFPDPLSKITAQSFVINAMTPVL 247
Y+ L + R G+T+ A+ P ++ ++ + A+ P
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYR--GMTM---QVAV---PRDELGRSNYGMIAINPGR 1816
Query: 248 QRLKGG-----FLLKKIIEDTNDKLSGRTKMKMFVYGAHDSTIANF 288
++++++ + T + I N+
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVE----------------IVNY 1846
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 5e-05
Identities = 51/390 (13%), Positives = 95/390 (24%), Gaps = 129/390 (33%)
Query: 61 PFG--WGQLTNVGK----RAQFAQGEFLRRPYDSFLGDRYSPDYLKVQCTDVDRTKMSTM 114
F W N+ + L D R + ++ +
Sbjct: 181 DFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 115 LFLAGLFPPKG----DQVWNPNLLWQPIPLNYETMKYDR------LLLGRYPCPRYQEEL 164
L V N W L+ + + R L +
Sbjct: 238 LKSKPY--ENCLLVLLNVQNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 165 DNVFNSPEVRAIL-------------EANK---------------------NLLDYASK- 189
EV+++L E N
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 190 -----ESGMPIVTPDDAQSLYSTLKAERELGLTLPAWTNAIFPDPLSKITAQSFVI--NA 242
ES + ++ P + + ++ L ++FP + I +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRL---------------SVFPPS-AHIPTILLSLIWFD 398
Query: 243 MTP-----VLQRLKGGFLLKK-----------IIEDTNDKLSGRTKMKMFVYGAHDSTIA 286
+ V+ +L L++K I + KL + H S +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-------HRSIVD 451
Query: 287 --NFLLTLGVWDMQIPE-----YNSLIILEVHQLQPGRHGIRVFLRNTTSEPYL----LQ 335
N T D+ P Y+ + H L+ H R+ L +L L+
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHI----GHHLKNIEHPERMTL---FRMVFLDFRFLE 504
Query: 336 IPGCSKIC----PWENFVSLTSSKIPVRSY 361
KI W S+ ++ ++ Y
Sbjct: 505 ----QKIRHDSTAWNASGSILNTLQQLKFY 530
Score = 42.1 bits (98), Expect = 3e-04
Identities = 29/240 (12%), Positives = 59/240 (24%), Gaps = 79/240 (32%)
Query: 138 IPLNYETMKYDRLLLGRYPCPRYQEELDNVFNSPEVRAILEANKNLLDYASKESGMPIVT 197
+ + + + + C Q+ ++ + E+ I+ +
Sbjct: 22 LSVFEDAFVDN------FDCKDVQDMPKSILSKEEIDHIIMS------------------ 57
Query: 198 PDDAQSLYSTLKAERELGLTLPAWTNAIFPDPLSKITAQSFVINAMTPVLQRLKGGFLLK 257
D R L Q FV + FL+
Sbjct: 58 KDAVSGTL------RLFWTLLSKQEE----------MVQKFVEEVLRI-----NYKFLMS 96
Query: 258 KIIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTLGVWDMQI-PEYNSLIILEVHQLQPG 316
I + S T+M Y + N D Q+ +YN + +L+
Sbjct: 97 PIKTEQRQP-SMMTRM----YIEQRDRLYN--------DNQVFAKYNVSRLQPYLKLRQA 143
Query: 317 RHGIRVFLRNTTSEPYL-LQ-IPGCSKICPWENFVSLTSSKIPVRSYDEECQALNPNFVY 374
L + + + G K + SY +C+ ++
Sbjct: 144 -------LLELRPAKNVLIDGVLGSGKTW-------VALDV--CLSYKVQCK--MDFKIF 185
Score = 40.6 bits (94), Expect = 8e-04
Identities = 48/325 (14%), Positives = 90/325 (27%), Gaps = 103/325 (31%)
Query: 81 FLRRP---YDSFLGDRYSPDY------LKVQCTDVDRTKMSTMLFLAGLFPPKGDQVWNP 131
L + F+ + +Y +K + M T +++ D+++N
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQR-----DRLYND 122
Query: 132 NLLWQPIPLNYETMKYDRLLLGRYPCPRYQEELDNVFNSPEVR-AILEA--NKNLLDYAS 188
N Q +Y R Q L ++R A+LE KN+L
Sbjct: 123 N---QVFA--------------KYNVSRLQPYL-------KLRQALLELRPAKNVLID-- 156
Query: 189 KESGMPIVTPDDAQSLYSTLKAE--RELGLTLPAWTNAIF---------PDPLSKITAQS 237
G+ S + + + + IF P+ + ++ Q
Sbjct: 157 ---GV-------LGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEML-QK 204
Query: 238 FVINAMTPVLQRLKGGFLLKKIIEDTNDKLSGRTKMKMFVYGAHDSTIANFLLTL-GVWD 296
+ R +K I +L K K + N LL L V +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLLVLLNVQN 255
Query: 297 MQIPEY---NSLIIL-----EVHQLQPGRHGIRVFL---RNTTSEPYLLQIPGCSKICPW 345
+ + I+L +V + L T + + + K
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLK---- 309
Query: 346 ENFVSLTSSKIPVRSYDEECQALNP 370
++ +P E NP
Sbjct: 310 --YLDCRPQDLP-----REVLTTNP 327
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.052
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 172 EVRAILEANKNLLDYASKESGMPIVTPDDAQSLYSTLKAERE 213
E +A+ K L ++ + + D A +L +KA E
Sbjct: 18 EKQAL----KKL------QASLKLYADDSAPAL--AIKATME 47
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_A
Length = 1299
Score = 33.3 bits (75), Expect = 0.14
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 11/100 (11%)
Query: 78 QGEFLRRPYDSFLGDRYSPDYLKVQCTDVDRTKMSTMLFLAGLFPPKGDQVWNPNLLWQP 137
+ FL +D L S + V +D + + +PP W+P+ +
Sbjct: 19 RRTFLPLRFDLLLDRLQSTNLHGVLYRALDFNPVDRSATVIQTYPPL--NAWSPHHAFIE 76
Query: 138 IPLNYETMK---YDRL------LLGRYPCPRYQEELDNVF 168
PL+Y +DR L RYP + + N
Sbjct: 77 NPLDYRDWTEFIHDRALAFVGVLTQRYPLTQNAQRYTNPL 116
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 0.41
Identities = 9/38 (23%), Positives = 10/38 (26%), Gaps = 19/38 (50%)
Query: 342 ICPWENFVSLTSSKIPVRSYDEECQALNPNFVYRESSG 379
CP EC+ P V R S G
Sbjct: 23 TCP-------------------ECKVYPPKIVERFSEG 41
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading
protein, ATP- binding, DNA replication,
nucleotide-binding, primosome; NMR {Bacillus subtilis}
Length = 106
Score = 29.9 bits (67), Expect = 0.47
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 159 RYQEELDNVFNSPEVRAILEANKNLLDYASKESGMP 194
R ++ + V +V+A L+ N+ ++D E +
Sbjct: 20 RLEQMKEKVMKDQDVQAFLKENEEVIDQKMIEKSLN 55
>2h4r_A MENT, heterochromatin-associated protein MENT; serine protease
inhibitor, serpin, hydrolase inhibitor; 2.70A {Gallus
gallus} PDB: 2dut_A
Length = 415
Score = 29.2 bits (66), Expect = 2.6
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 160 YQEELDNVFNSPEVRA-ILEANKNLLDYASKESGMPIVTPDDAQSLYSTLKA-ERELGL- 216
Y + V ++ ++E L Y +E M I+ PDD + + L+ EREL
Sbjct: 232 YMRDTFPVLIMEKMNFKMIE-----LPYVKRELSMFILLPDDIKDGTTGLEQLERELTYE 286
Query: 217 TLPAWTN 223
L W +
Sbjct: 287 RLSEWAD 293
>2h4p_A MENT, heterochromatin-associated protein MENT; serine protease
inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus
gallus} PDB: 2h4q_A
Length = 394
Score = 28.9 bits (65), Expect = 2.6
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 160 YQEELDNVFNSPEVRA-ILEANKNLLDYASKESGMPIVTPDDAQSLYSTLKA-ERELGL- 216
Y + V ++ ++E L Y +E M I+ PDD + + L+ EREL
Sbjct: 252 YMRDTFPVLIMEKMNFKMIE-----LPYVKRELSMFILLPDDIKDGTTGLEQLERELTYE 306
Query: 217 TLPAWTN 223
L W +
Sbjct: 307 RLSEWAD 313
>1wz9_A Maspin precursor; serpin, tumor suppressor, serpinb5, signaling
protein; HET: CME; 2.10A {Homo sapiens} PDB: 1xu8_A
1xqg_A 1xqj_A
Length = 375
Score = 28.3 bits (64), Expect = 3.8
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 160 YQEELDNVFNSPEVRA-ILEANKNLLDYASKESGMPIVTPDDAQSLYSTLKA-ERELGL- 216
E + N + I+E L + +K M I+ P D + + L+ E++L
Sbjct: 199 NMEATFCMGNIDSINCKIIE-----LPFQNKHLSMFILLPKDVEDESTGLEKIEKQLNSE 253
Query: 217 TLPAWTN 223
+L WTN
Sbjct: 254 SLSQWTN 260
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 28.2 bits (63), Expect = 5.5
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 306 IILEVHQLQPGRHGIRVFLRNTTSEPYLLQIP 337
I+ V ++ I F+ N E + P
Sbjct: 202 IVDCVKNIR---KDIICFVDNCYGEFMDTKEP 230
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic
binding protein, galactose, GBP, sugar binding protein;
HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Length = 400
Score = 27.5 bits (61), Expect = 8.5
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 17/96 (17%)
Query: 118 AGLFPP--KGDQVWNPNLLWQPIPLNYE-TMKYDRLLLGRYPCPRYQEELDNVFNSPEVR 174
GL P G+ W LW+ + L ++ L G+ F P+
Sbjct: 155 KGLEAPLALGEN-WTQQHLWESVALAVLGPDDWNNLWNGKLK-----------FTDPKAV 202
Query: 175 AILEANKNLLDYASKESGMPIVTPDDAQSLYSTLKA 210
E +LD A+K ++ A KA
Sbjct: 203 RAWEVFGRVLDCANK--DAAGLSWQQAVDRVVQGKA 236
>1hle_A Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine
proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Length = 345
Score = 27.2 bits (61), Expect = 9.0
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 160 YQEELDNVFNSPEVRA-ILEANKNLLDYASKESGMPIVTPDDAQSLYSTLKA-ERELGL- 216
YQ++ +++ +LE L Y KE M I+ PDD + + L+ E++L L
Sbjct: 200 YQKKKFPYNYIEDLKCRVLE-----LPYQGKELSMIILLPDDIEDESTGLEKIEKQLTLD 254
Query: 217 TLPAWTNA 224
L WT
Sbjct: 255 KLREWTKP 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.424
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,904,805
Number of extensions: 351632
Number of successful extensions: 773
Number of sequences better than 10.0: 1
Number of HSP's gapped: 725
Number of HSP's successfully gapped: 32
Length of query: 381
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 286
Effective length of database: 4,049,298
Effective search space: 1158099228
Effective search space used: 1158099228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)