Query psy6476
Match_columns 546
No_of_seqs 117 out of 172
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 19:05:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2479|consensus 100.0 6E-208 1E-212 1591.4 39.6 520 6-537 2-535 (549)
2 PF05091 eIF-3_zeta: Eukaryoti 100.0 9E-189 2E-193 1508.4 44.8 502 8-525 1-516 (516)
3 PF10505 NARG2_C: NMDA recepto 97.3 0.0076 1.6E-07 60.5 14.8 143 361-528 14-167 (220)
4 KOG1982|consensus 94.6 0.29 6.3E-06 52.6 11.1 165 244-454 104-273 (359)
5 PF08652 RAI1: RAI1 like PD-(D 88.2 1.2 2.6E-05 37.1 5.4 55 380-454 1-59 (69)
6 KOG1832|consensus 58.7 4 8.8E-05 48.7 0.8 33 493-525 1358-1397(1516)
7 PRK06242 flavodoxin; Provision 49.0 24 0.00052 32.0 4.1 41 430-475 13-55 (150)
8 KOG0584|consensus 26.0 9.9 0.00022 43.8 -2.7 91 163-264 103-202 (632)
9 PTZ00029 60S ribosomal protein 24.2 1E+02 0.0022 31.1 4.2 54 463-523 162-216 (216)
10 PF14320 Paramyxo_PCT: Phospho 22.3 49 0.0011 34.0 1.5 18 226-243 261-278 (313)
11 PF01731 Arylesterase: Arylest 20.9 1.1E+02 0.0023 26.8 3.2 25 504-528 62-86 (86)
No 1
>KOG2479|consensus
Probab=100.00 E-value=5.6e-208 Score=1591.37 Aligned_cols=520 Identities=64% Similarity=1.086 Sum_probs=470.0
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCccCCCCcccccccccccccccCCccccccchhhccccc-cCC--CCCccccccccc
Q psy6476 6 GLPHFPPPMIQDNVNGWGPCDMPQQFKDMPYQPFSKGDRLGKISDWTGLAFQDKKYINKYQS-QFG--SGSQYAYYHEED 82 (546)
Q Consensus 6 ~~~~f~lp~i~~n~~gWGP~~~~~~~~~iPyaPfsK~DklGkvaDWt~~~~~~~~~~~~y~~-~~g--~~~~f~y~~~ed 82 (546)
+|++|++|.|.+|++|||||+.|+.|.+||||||||+||||||||||..+.+++++.++|++ .|| ++++|+|+|+||
T Consensus 2 ~~~~Fe~p~v~~n~~gWGP~e~~~~~~dvPyqpFsK~DRLGkvaDWt~~~~~~kr~~~ky~s~~fg~g~gsq~~y~h~eD 81 (549)
T KOG2479|consen 2 VFPKFELPTVAFNESGWGPPEVSDTFPDVPYQPFSKSDRLGKVADWTGASNPDKRYNNKYASDTFGEGAGSQYSYFHEED 81 (549)
T ss_pred CcccccccccccCCCCCCCCccccccCCCCCccccccccccchhccccCCCccccccccccchhhccCcccccccccccc
Confidence 57899999999999999999999999999999999999999999999988888899999998 676 799999999999
Q ss_pred CCCcEEeeCCCCCCCC-CCCCC---CCCC-----CCCCCCCcchhhhhcccccccccccccCCccccccCCCCCccCCCC
Q psy6476 83 ESTFHLVDTTRIQKPP-YQRGR---NMRG-----RGGGRGGAQAQFQLLGKGFKLRDRDRKGQSGAKRYGKTQNIRNNKN 153 (546)
Q Consensus 83 E~sF~lVD~~~~~k~~-~~r~r---~~r~-----~r~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~g~r~g~r~~~~ 153 (546)
|++|||||++...+++ ++|+| .+|+ +|++|++...++..+..+ +.+.++.++. ++.+|+|+| .
T Consensus 82 essF~lVDt~~~~~~~~~~~~r~r~~~r~~~~~~~r~~rg~~~~~~~~~~ak-~~~~~r~r~~--~~~~g~rfg-----~ 153 (549)
T KOG2479|consen 82 ESSFQLVDTKPRARKPFYQRGRFRQNHRRNRRPKGRDGRGGTNGGAKKRSAK-QTRARRDRLY--GRNRGRRFG-----R 153 (549)
T ss_pred ccceeeecCCCCCCCCccccccccHHhhhccccccccccccccccccccccc-ccccccchhc--ccccccccc-----C
Confidence 9999999995555555 55665 2222 222232221111111111 1111111112 444566655 4
Q ss_pred CCCCCccCCceeeCCCceEEEeeeccccccccCCCCCCCcceeeeccccccccccccccCCCCccccccCccccccCCCC
Q psy6476 154 QAPIKNRDASVTVRSDWVTIEEMDFARFSKLSLPNVKEPQDLYCCGSVEFYDKSYDRVNCKNEKPLVSNERIFHTVTTTD 233 (546)
Q Consensus 154 ~~~~~~r~~SV~v~~dW~~~eEi~f~~L~Kl~l~~v~~~eDi~~~G~l~~Ydk~~Dri~~k~~~~L~~~~~~~~~~tTsd 233 (546)
+++++.|++||.|++||++||||||++|+||+|++|++|+||.+||.|+||||+||||++|+++|||+++|+||+|||||
T Consensus 154 ~~~~k~r~sSV~V~~dW~~lEEm~fs~lsKL~l~ni~~p~di~~cG~Le~YDKsfDRI~vk~ekpLq~~~rv~~~vTTTd 233 (549)
T KOG2479|consen 154 GKPQKARESSVDVRPDWVVLEEMDFSRLSKLSLPNISEPVDILTCGGLEYYDKSFDRITVKNEKPLQRIDRVFHTVTTTD 233 (549)
T ss_pred CCccccccCccccccchhhhhccchhhhhhhcccCCCCCceeeeecceeecccccccccccccchHHHhhceeeccccCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhc-CCcEeehHHHHHHHhhcCCccccceEEEEEECCEEEEEcCCCCccceeeecCCCCCCCCCCCCCCCChh
Q psy6476 234 DPIIRKLSKT-EGNVYATDTILATLMCCTRSNYSWDIVIEKIGDKLFFDKRDNTEFDLLTVNETSQDPPSDEQTSINSPR 312 (546)
Q Consensus 234 DPvi~~la~~-~~~VfaTD~ILa~LM~a~RSvYsWDIvv~k~g~klffDKRd~s~~D~lTVnEta~~pP~dd~~~iN~~~ 312 (546)
|||||+||++ +|||||||+|||+|||||||||||||||+|+|+|||||||++++||+|||||||.|||+|++++||||+
T Consensus 234 DpVIrrLak~~~gnVFaTDaILatlMc~tRSvYsWDiVi~rvg~KlFfDKRd~~pfDlLTV~Ets~Epp~d~~n~iNs~~ 313 (549)
T KOG2479|consen 234 DPVIRRLAKETKGNVFATDAILATLMCATRSVYSWDIVIQRVGDKLFFDKRDGSPFDLLTVNETSVEPPMDDDNSINSAH 313 (549)
T ss_pred CHHHHHHhhccCCceeeHHHHHHHHhccCcccccceeEEEEccceEEEeccCCCcceeEEeccccCCCCcccCCCcCChh
Confidence 9999999996 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCc-cccCCCCCCCCCcchhhcccccccceeeEEeecCCCeeEEEeeeeceeeeCCCCCc
Q psy6476 313 NLALEATFINHNFSQQVLKSGDA-RHSFDNPNPFISEEEEEEGEVASVAYKYRKWDLGEGIGLVARCEHDGVLASPNGDL 391 (546)
Q Consensus 313 ~L~~EAT~IN~nF~~Qvl~~~~~-~~~~~~pnPF~~~~~~~~~~~as~~YrYRk~~L~~~i~livR~Evda~~~~~~~~~ 391 (546)
+|++|||||||||+||||+.+++ +++|++||||.+++ ++.||+|||||+|+|+++|.||||||||||+++++++.
T Consensus 314 ~La~EAtyINqNF~qQvlr~~~~er~~f~~pnPf~~e~----~~~As~aYrYR~w~Lg~~v~Lv~RcE~dgvv~g~~ne~ 389 (549)
T KOG2479|consen 314 SLAVEATYINQNFSQQVLRRGDEEKYTFPEPNPFEEEG----EELASVAYRYRRWKLGDDVVLVARCELDGVVQGPNNEV 389 (549)
T ss_pred hhhhhhhhhhhhhHHHHHhhCCcceeeCCCCCCccCcC----ccccceeeEEeeecCCCCeEEEEEecccceecCCCCCc
Confidence 99999999999999999998854 89999999994443 46899999999999999999999999999999999999
Q ss_pred ceEEEEeeccccccCCCCchhhhhhhhhccchhhHHhhhchhhHHHHHHHHHhcCCceeeEeEEeecccCCCCCcEEEEe
Q psy6476 392 QFLNIKALNEWDSKLSGGVEWRQKLDVQRGAVLANELRNNSCKLAKWTVQALLAGSAQIKFGYVSRAQVRDATRHVILGT 471 (546)
Q Consensus 392 ~~~~i~ALNE~d~k~~g~~dWR~kLdsQrGAvlAtE~kNNs~KlAkWt~qa~Lagad~mKlGfVSR~~p~D~~~HvILg~ 471 (546)
|||+||||||||||.++++|||+|||+||||||||||||||||||||||||||||+|+||||||||.||||+++||||||
T Consensus 390 qfltIkAlNEwDsk~sngVdWRqKLdtQRGAVlAtElkNNs~KlAkWT~qAlLAgsD~mKlGyVSR~n~Rd~~~HvILgt 469 (549)
T KOG2479|consen 390 QFLTIKALNEWDSKYSNGVDWRQKLDTQRGAVLATELKNNSCKLAKWTVQALLAGSDQMKLGYVSRVNPRDHQNHVILGT 469 (549)
T ss_pred eEEEhhhhccccccccCcccHHHhhhhhcchhhhhhhhcchhHHHHHHHHHHHcCCcceeeeeeeccCcccccceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCchhhhhhhcccccCchhhHHHHHHHHHhCCCccEEEEecCCCCeEEEEeCCCCCCCCCCCcC
Q psy6476 472 QQYKPAEFAGQINLNMDNAWGILRCIIDICLKQKDGKYLIMKDPNKPLIRLYDIPDNTFDSDNEEN 537 (546)
Q Consensus 472 q~~kp~~fA~Qi~L~~~N~WGIvr~iid~~~k~~dGkYvl~KDPnK~~irlY~vp~d~fe~~~e~~ 537 (546)
|+|||.|||+||||||+|||||||||||+||||+|||||||||||||+||||+||++|||+|++++
T Consensus 470 q~~KP~efAsqinLnmdN~WGIlRciiDlcMK~~dGKYll~KDPnkpiiRlYsvP~~tF~sd~~~~ 535 (549)
T KOG2479|consen 470 QQYKPKEFASQINLNMDNAWGILRCIIDLCMKQPDGKYLLVKDPNKPIIRLYSVPPNTFESDYGEP 535 (549)
T ss_pred eccChHHHHhhhcccccchhhhHHHHHHHHhcCCCCcEEEEeCCCCceEEEeeCCCCccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999984333
No 2
>PF05091 eIF-3_zeta: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); InterPro: IPR007783 This family is made up of eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta/eIF3 p66/eIF3d). Eukaryotic initiation factor 3 is a multi-subunit complex that is required for binding of mRNA to 40S ribosomal subunits, stabilisation of ternary complex binding to 40S subunits, and dissociation of 40S and 60S subunits. These functions and the complex nature of eIF3 suggest multiple interactions with many components of the translational machinery []. The gene coding for the protein has been implicated in cancer in mammals [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=100.00 E-value=8.9e-189 Score=1508.43 Aligned_cols=502 Identities=60% Similarity=1.034 Sum_probs=441.2
Q ss_pred CCCCCCccccCCCCCCCCCCCCccC---CCCcccccccccccccccCCccccccchhhccccccCC-CCCcccccccccC
Q psy6476 8 PHFPPPMIQDNVNGWGPCDMPQQFK---DMPYQPFSKGDRLGKISDWTGLAFQDKKYINKYQSQFG-SGSQYAYYHEEDE 83 (546)
Q Consensus 8 ~~f~lp~i~~n~~gWGP~~~~~~~~---~iPyaPfsK~DklGkvaDWt~~~~~~~~~~~~y~~~~g-~~~~f~y~~~edE 83 (546)
|+|.+|.|++|++||||+..++++. +||||||||+||||||||||..+++ ++|++++| ++++|+|+|+|||
T Consensus 1 M~F~lp~i~~N~~gWGP~~~~~~~~~~~~iPyaPfsK~DklGrvaDWt~~~~~-----~~~~~~~~~~~s~f~y~~~edE 75 (516)
T PF05091_consen 1 MSFELPEIQDNPDGWGPPSSPEQFLNFKDIPYAPFSKGDKLGRVADWTSNTYQ-----NKYAYGAGGGSSVFAYFHEEDE 75 (516)
T ss_pred CCccCCccCCCCCCCCCCCCccccccccCCccCcccccccccccccccccccc-----cccccccccCcccccccccccc
Confidence 5699999999999999999888777 9999999999999999999987655 45666655 5778999999999
Q ss_pred CCcEEeeCCCCCCCC--CCCCCCCCCCCCCCCCcc-hhhhhcccccccccccccCCccccccCCCCCccCCCCCCCCCcc
Q psy6476 84 STFHLVDTTRIQKPP--YQRGRNMRGRGGGRGGAQ-AQFQLLGKGFKLRDRDRKGQSGAKRYGKTQNIRNNKNQAPIKNR 160 (546)
Q Consensus 84 ~sF~lVD~~~~~k~~--~~r~r~~r~~r~~r~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~g~r~g~r~~~~~~~~~~r 160 (546)
+||||||+.+.+++. ++|++..++++.+|+..+ ++++...+..++.++. +.|.++++++| |+.+.+.++.|
T Consensus 76 ssF~LVD~~r~~~~~~~~~r~r~~~~q~~~q~~~~~~~~~~~~~~~~~~~r~--~~r~~~~~~~r----~~~~~~~~~~r 149 (516)
T PF05091_consen 76 SSFQLVDNARPQKRRKFGQRGRQRQNQRRGQGQQRRRGQQQSQQGKRGKQRK--QKRQQQNRGQR----RGRRQRWQRNR 149 (516)
T ss_pred ccceeecCCCCcccccccccCccccccccccccccccccccccccccccccc--ccccccccccc----cCccccccccc
Confidence 999999998888642 223321111111111000 0000000000111111 11112222222 33444558999
Q ss_pred CCceeeCCCceEEEeeeccccccccCCCCCCCcceeeeccccccccccccccCCCCcccccc-CccccccCCCChHHHHH
Q psy6476 161 DASVTVRSDWVTIEEMDFARFSKLSLPNVKEPQDLYCCGSVEFYDKSYDRVNCKNEKPLVSN-ERIFHTVTTTDDPIIRK 239 (546)
Q Consensus 161 ~~SV~v~~dW~~~eEi~f~~L~Kl~l~~v~~~eDi~~~G~l~~Ydk~~Dri~~k~~~~L~~~-~~~~~~~tTsdDPvi~~ 239 (546)
++||+|+|||++||||||++|+||+++.++++|||.+||+|+||||+||||+||+|++|+++ +++||+|||||||||++
T Consensus 150 ~~SV~v~~dW~~leEidf~~L~Kl~l~~~~~~eDi~~~G~l~~YDksyDri~~K~e~~L~~~~~~~~~~~tTsdDPvi~~ 229 (516)
T PF05091_consen 150 ESSVEVRPDWVVLEEIDFSRLSKLNLPNVPEPEDIASCGSLEYYDKSYDRINPKNERPLQRIKDRIFYNVTTSDDPVIRE 229 (516)
T ss_pred ccceecCCCceEEEEechhhcchhhccCCCCcchHHHcCCcccccccccccCCCCcchhhhhcccccccCCCCCCHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999998 89999999999999999
Q ss_pred hhhc-CCcEeehHHHHHHHhhcCCccccceEEEEEECCEEEEEcCCCCccceeeecCCCCCCCCC-CCCCCCChhhhhHH
Q psy6476 240 LSKT-EGNVYATDTILATLMCCTRSNYSWDIVIEKIGDKLFFDKRDNTEFDLLTVNETSQDPPSD-EQTSINSPRNLALE 317 (546)
Q Consensus 240 la~~-~~~VfaTD~ILa~LM~a~RSvYsWDIvv~k~g~klffDKRd~s~~D~lTVnEta~~pP~d-d~~~iN~~~~L~~E 317 (546)
||++ +|+|||||+|||+||||+||||||||||+|+||||||||||+|+||||||||||+|||+| ++++||+|++|++|
T Consensus 230 la~~~~~~VfaTD~ILa~LM~a~RSvYsWDIvv~k~g~klffDKrd~s~~D~lTVnEta~~pP~~~~~~~iN~~~~L~~E 309 (516)
T PF05091_consen 230 LAEKDEATVFATDAILATLMCATRSVYSWDIVVTKVGNKLFFDKRDGSNFDLLTVNETAADPPQEDDKDSINSPSNLALE 309 (516)
T ss_pred HHhhCCCcEeehHHHHHHHHhcccccCCceEEEEEECCEEEEEccCCCceeeEEecCCCCCCCcccCccCCCCHHHHHHH
Confidence 9877 899999999999999999999999999999999999999999999999999999999998 78999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccCCCCCCCCCcchhhcccccccceeeEEeecCCC----eeEEEeeeeceeeeCCCCCcce
Q psy6476 318 ATFINHNFSQQVLKSGDARHSFDNPNPFISEEEEEEGEVASVAYKYRKWDLGEG----IGLVARCEHDGVLASPNGDLQF 393 (546)
Q Consensus 318 AT~IN~nF~~Qvl~~~~~~~~~~~pnPF~~~~~~~~~~~as~~YrYRk~~L~~~----i~livR~Evda~~~~~~~~~~~ 393 (546)
||+|||||+||||++++++++|++||||+++++ ++||+|||||||+|+++ |+||||||||||+++++++++|
T Consensus 310 AT~IN~nF~qQvl~~~~~~~~~~~~nPF~~~~~----~~as~~YrYRk~~L~~~~~~~i~livR~Evdav~~~~~~~~~~ 385 (516)
T PF05091_consen 310 ATYINQNFSQQVLKEDEEKYKFDEPNPFYDEDE----EPASVAYRYRKFDLGDDTEDPIDLIVRCEVDAVMKGPSGEDQF 385 (516)
T ss_pred HHHHHHHHHHHHhhcCCccccCCCCCCCCCccc----cccccceeEEEEECCCCCCCceEEEEEeeeeeEecCCCCCceE
Confidence 999999999999999888999999999987753 48999999999999998 9999999999999988899999
Q ss_pred EEEEeeccccccCCCCchhhhhhhhhccchhhHHhhhchhhHHHHHHHHHhcCCceeeEeEEeecccCCCCCcEEEEeee
Q psy6476 394 LNIKALNEWDSKLSGGVEWRQKLDVQRGAVLANELRNNSCKLAKWTVQALLAGSAQIKFGYVSRAQVRDATRHVILGTQQ 473 (546)
Q Consensus 394 ~~i~ALNE~d~k~~g~~dWR~kLdsQrGAvlAtE~kNNs~KlAkWt~qa~Lagad~mKlGfVSR~~p~D~~~HvILg~q~ 473 (546)
|+||||||||||.+| +|||+||||||||||||||||||||||||||||+|||||+||||||||+||+|+.+|||||||+
T Consensus 386 v~i~aLNE~d~k~~~-~dWR~kLdsQrGAvlAtE~kNNs~KlAkWt~qa~Lagad~mKlGfVSR~~p~d~~~HvILg~q~ 464 (516)
T PF05091_consen 386 VTIKALNEFDSKAQG-VDWRKKLDSQRGAVLATEMKNNSCKLAKWTAQALLAGADQMKLGFVSRANPRDNSNHVILGTQT 464 (516)
T ss_pred EEEEeccccCCcccC-ccHHHHHHhcCCeEechhhhccchhhHHHHHHHHhcCCceeeEEEEeccCCCCCCccEEEEeec
Confidence 999999999999987 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhhhcccccCchhhHHHHHHHHHhCCCccEEEEecCCCCeEEEEeC
Q psy6476 474 YKPAEFAGQINLNMDNAWGILRCIIDICLKQKDGKYLIMKDPNKPLIRLYDI 525 (546)
Q Consensus 474 ~kp~~fA~Qi~L~~~N~WGIvr~iid~~~k~~dGkYvl~KDPnK~~irlY~v 525 (546)
|||++||+||||+|+|||||||||||+||+++|||||||||||||+||||+|
T Consensus 465 ~kp~~fA~Qi~l~~~N~WgIvr~iid~~~~~~dGkYvl~Kdpnk~~irlY~V 516 (516)
T PF05091_consen 465 YKPRDFAAQINLNMDNMWGIVRCIIDLCMKQPDGKYVLVKDPNKPVIRLYSV 516 (516)
T ss_pred cChHHHHHHcCCChhhhHHHHHHHHHHHHhCCCccEEEEECCCCCeEEEEeC
Confidence 9999999999999999999999999999999999999999999999999997
No 3
>PF10505 NARG2_C: NMDA receptor-regulated gene protein 2 C-terminus; InterPro: IPR019535 The transition of neuronal cells from pre-cursor to mature state is regulated by the N-methyl-d-aspartate (NMDA) receptor, a glutamate-gated ion channel that is permeable to Ca2+. NMDA receptors probably mediate this activity by permitting expression of NARG2. NARG2 (NMDA receptor-regulated gene protein 2) is transiently expressed, being a regulatory protein that is present in the nucleus of dividing cells and then down-regulated as progenitors exit the cell cycle and begin to differentiate. NARG2 contains repeats of (S/T)PXX, (11 in mouse, 6 in human), a putative DNA-binding motif that is found in many gene-regulatory proteins including Kruppel, Hunchback and Antennapedi [].
Probab=97.27 E-value=0.0076 Score=60.49 Aligned_cols=143 Identities=23% Similarity=0.388 Sum_probs=99.9
Q ss_pred eeeEEeecC---CCeeEEEeeeeceeeeCC-C--CCcce-EEEEeeccccccCCCCchhhhhhhhhccchhhHHhhhchh
Q psy6476 361 YKYRKWDLG---EGIGLVARCEHDGVLASP-N--GDLQF-LNIKALNEWDSKLSGGVEWRQKLDVQRGAVLANELRNNSC 433 (546)
Q Consensus 361 YrYRk~~L~---~~i~livR~Evda~~~~~-~--~~~~~-~~i~ALNE~d~k~~g~~dWR~kLdsQrGAvlAtE~kNNs~ 433 (546)
=.|.-|.|+ .++.|+|||.|||+.... . -..+| |.|.-=-||=+-. || |.=-.+-
T Consensus 14 ~~Y~lw~L~~~~~~~~lLvR~~v~~~~~~~~~~~~~~~~pv~v~~KlEyq~~~--------------G~----E~lT~sE 75 (220)
T PF10505_consen 14 VTYKLWSLGDKDSDLLLLVRCSVDGVEDSKSDRKLGCQFPVSVLPKLEYQPEY--------------GA----EILTKSE 75 (220)
T ss_pred eEEEEEEcCCCCcceEEEEEeccceeeecccCCCccceeeEEeeecccccccc--------------ch----hhcCHHH
Confidence 457789997 249999999999996221 1 11233 6666555553221 22 3333333
Q ss_pred hHHHHHHHHHhcCCceeeEeEEeecccCCCCCcEEEEeeecCchhhhhhh-cccccCchhhHHHH---HHHHHhCCCccE
Q psy6476 434 KLAKWTVQALLAGSAQIKFGYVSRAQVRDATRHVILGTQQYKPAEFAGQI-NLNMDNAWGILRCI---IDICLKQKDGKY 509 (546)
Q Consensus 434 KlAkWt~qa~Lagad~mKlGfVSR~~p~D~~~HvILg~q~~kp~~fA~Qi-~L~~~N~WGIvr~i---id~~~k~~dGkY 509 (546)
-+.-|+-.-|..++ .++++|.++. .|.||.....+...|..++ .+.-.++-.|+-.| +..+...++|.|
T Consensus 76 l~~~W~~~~Lr~~s----~~~~~RI~~~---t~~vl~~Ek~~~~~l~~~~~~~~p~~~~~~L~~L~~~Lk~L~~L~pG~Y 148 (220)
T PF10505_consen 76 LCKLWTESKLRPNS----SLLRARINAW---TSEVLSIEKLSMESLEEELCRFYPIKSLNILSHLHEFLKKLSSLQPGSY 148 (220)
T ss_pred HHHHHHHHhhCCCC----eeEEEEEccc---cCceeEEEecCHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHcCCCCCcE
Confidence 34446666566666 5678998765 5789999999999998874 34455555566555 888999999999
Q ss_pred EEEecCCCCeEEEEeCCCC
Q psy6476 510 LIMKDPNKPLIRLYDIPDN 528 (546)
Q Consensus 510 vl~KDPnK~~irlY~vp~d 528 (546)
||-..|+.+.+-+|...++
T Consensus 149 LLrh~~~d~f~~i~k~~d~ 167 (220)
T PF10505_consen 149 LLRHTPGDSFVLIYKSSDN 167 (220)
T ss_pred EEEecCCCCcEEEEEcCCC
Confidence 9999999999999998763
No 4
>KOG1982|consensus
Probab=94.64 E-value=0.29 Score=52.60 Aligned_cols=165 Identities=21% Similarity=0.307 Sum_probs=100.8
Q ss_pred CCcEeehHHHHHHHhhcCCcccc-ceEEEEEECCEEEEEcCCCCccceeeecCCCCCCCCCCCCCCCChhhhhHHHHHHH
Q psy6476 244 EGNVYATDTILATLMCCTRSNYS-WDIVIEKIGDKLFFDKRDNTEFDLLTVNETSQDPPSDEQTSINSPRNLALEATFIN 322 (546)
Q Consensus 244 ~~~VfaTD~ILa~LM~a~RSvYs-WDIvv~k~g~klffDKRd~s~~D~lTVnEta~~pP~dd~~~iN~~~~L~~EAT~IN 322 (546)
.+.+.++=.||--||||+--.-. |-+.++|..|.||+...+ |.. ++..+ .|.+..+ .|=-++-
T Consensus 104 ~a~~vt~Rg~L~kii~~~y~~~~~w~l~a~r~~Gtiy~~~~k-----------~~~-~~~~d---~d~~~~~-~~~~~~g 167 (359)
T KOG1982|consen 104 NADFVTWRGVLTKIISAPYNKQEGWELGAIRFNGTIYLCEEK-----------TPE-ARNID---QDRAAFL-YEFELWG 167 (359)
T ss_pred hcceeehHHHHHHHhcccccCCCCcEEEEEEeCceEEEeecc-----------Ccc-ccccc---hhhhhhh-hHHHhhc
Confidence 45699999999999999876655 999999999999998876 211 11111 2233333 5555566
Q ss_pred HHHHHHHhhcCCccccCCCCCCCCCcchhhcccccccceeeEEeecCCCeeEEEeeeeceeeeC-CCC-C--cceEEEEe
Q psy6476 323 HNFSQQVLKSGDARHSFDNPNPFISEEEEEEGEVASVAYKYRKWDLGEGIGLVARCEHDGVLAS-PNG-D--LQFLNIKA 398 (546)
Q Consensus 323 ~nF~~Qvl~~~~~~~~~~~pnPF~~~~~~~~~~~as~~YrYRk~~L~~~i~livR~Evda~~~~-~~~-~--~~~~~i~A 398 (546)
.+|.+=+....+. .....|-=+++.+ +-.+ =-+.+|+. .-|+-=.|+|+.-.. +.+ + ..||-+|+
T Consensus 168 ~~fe~~~t~~~~~--~~~~t~~~V~~~~----ef~~----V~r~~l~~-~~~l~~~evdc~~~~~~~~~~~~~~~VELKt 236 (359)
T KOG1982|consen 168 TKFEQYVTADRDQ--KEPDTNHSVVTNE----EFCS----VVRTRLGG-SILLFGAEVDCIDYSGPNDFDKRGNYVELKT 236 (359)
T ss_pred cchhheeeccCcc--ccCCCCccccccc----eeee----eeeeccCC-ceEecccceeeeccCCCcChhhcCceEEEEe
Confidence 6666444433222 2222331112211 1122 13456665 567777899984321 222 1 14777777
Q ss_pred eccccccCCCCchhhhhhhhhccchhhHHhhhchhhHHHHHHHHHhcCCceeeEeE
Q psy6476 399 LNEWDSKLSGGVEWRQKLDVQRGAVLANELRNNSCKLAKWTVQALLAGSAQIKFGY 454 (546)
Q Consensus 399 LNE~d~k~~g~~dWR~kLdsQrGAvlAtE~kNNs~KlAkWt~qa~Lagad~mKlGf 454 (546)
- ....+..+|++ -| ..|+.||=+||.|.|++.|=+||
T Consensus 237 s----~~~~~~~~~~~-----------~e----r~K~~KwW~QsFL~Gi~~IiiG~ 273 (359)
T KOG1982|consen 237 S----YKEMGPSQVDK-----------FE----RLKLLKWWLQSFLVGIPRIIIGF 273 (359)
T ss_pred e----hhhcCccccch-----------hh----hhHHHHHHHHHHhcCCCeEEEEE
Confidence 5 22233356666 22 68999999999999999999998
No 5
>PF08652 RAI1: RAI1 like PD-(D/E)XK nuclease; InterPro: IPR013961 RAI1 is homologous to Caenorhabditis elegans DOM-3 and human DOM3Z and binds to a nuclear exoribonuclease []. It is required for 5.8S rRNA processing []. ; PDB: 3FQD_B 3FQG_A 3FQI_A 3FQJ_A.
Probab=88.17 E-value=1.2 Score=37.07 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=33.3
Q ss_pred eceeeeCCC----CCcceEEEEeeccccccCCCCchhhhhhhhhccchhhHHhhhchhhHHHHHHHHHhcCCceeeEeE
Q psy6476 380 HDGVLASPN----GDLQFLNIKALNEWDSKLSGGVEWRQKLDVQRGAVLANELRNNSCKLAKWTVQALLAGSAQIKFGY 454 (546)
Q Consensus 380 vda~~~~~~----~~~~~~~i~ALNE~d~k~~g~~dWR~kLdsQrGAvlAtE~kNNs~KlAkWt~qa~Lagad~mKlGf 454 (546)
|||+..... ....||-+|+-....+..+. -+-+- |+-||=+||.|+|++.|=+||
T Consensus 1 vDci~~~~~~~~~~~~~yvELKT~~~~~~~~~~-------------------~~f~r-KllkwW~QsfL~Gi~~IvvG~ 59 (69)
T PF08652_consen 1 VDCIDDSKPITNDSPGNYVELKTSKDIMSPKQW-------------------SNFER-KLLKWWLQSFLVGIPRIVVGF 59 (69)
T ss_dssp E-EESTT-SS--STTCCEEEEEEEE---SHCCC-------------------HHHHH-HHHHHHHHHHCTT--EEEEEE
T ss_pred CeeeecCCCCCCCCCCcEEEEeeeccccCchHH-------------------HHHhH-HHHHHHHHHhccCCCEEEEEE
Confidence 577764321 12679999998766433211 11122 899999999999999999999
No 6
>KOG1832|consensus
Probab=58.70 E-value=4 Score=48.69 Aligned_cols=33 Identities=27% Similarity=0.697 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhCCCccEEEE--ecCCC-----CeEEEEeC
Q psy6476 493 ILRCIIDICLKQKDGKYLIM--KDPNK-----PLIRLYDI 525 (546)
Q Consensus 493 Ivr~iid~~~k~~dGkYvl~--KDPnK-----~~irlY~v 525 (546)
+=|||+|+|-...|.+.-++ -||.. -+.|+|+|
T Consensus 1358 v~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~sT~~r~yEI 1397 (1516)
T KOG1832|consen 1358 VDRCLLDLCTEPTDSFLGVIEMEDQEDMDQFSTSARMYEI 1397 (1516)
T ss_pred cccchhhhhcCCccceEEEEeccChhhhhhhhhhhhhhhh
Confidence 34899999998777665443 34433 38999998
No 7
>PRK06242 flavodoxin; Provisional
Probab=48.96 E-value=24 Score=31.99 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=29.5
Q ss_pred hchhhHHHHHHHHHhcCCceeeEeEEeecccC--CCCCcEEEEeeecC
Q psy6476 430 NNSCKLAKWTVQALLAGSAQIKFGYVSRAQVR--DATRHVILGTQQYK 475 (546)
Q Consensus 430 NNs~KlAkWt~qa~Lagad~mKlGfVSR~~p~--D~~~HvILg~q~~k 475 (546)
-|+-|+|+++++.+ +++.+.+. ..... ....++|||+-+|-
T Consensus 13 GnT~~~A~~ia~~l--~~~~~~i~---~~~~~~~~~~d~ii~g~pvy~ 55 (150)
T PRK06242 13 GNTEKIAKAIAEVL--DAEVIDPG---DVNPEDLSEYDLIGFGSGIYF 55 (150)
T ss_pred CCHHHHHHHHHHhc--CcEEecHH---HCCcccHhHCCEEEEeCchhc
Confidence 58999999999998 67666543 32222 36689999997663
No 8
>KOG0584|consensus
Probab=26.01 E-value=9.9 Score=43.78 Aligned_cols=91 Identities=25% Similarity=0.322 Sum_probs=60.9
Q ss_pred ceeeCCCceEEEeeeccccccccCCCCCCCcceeeeccccccccccccccCCCCccccc-cCccccccCCCChHHHHHhh
Q psy6476 163 SVTVRSDWVTIEEMDFARFSKLSLPNVKEPQDLYCCGSVEFYDKSYDRVNCKNEKPLVS-NERIFHTVTTTDDPIIRKLS 241 (546)
Q Consensus 163 SV~v~~dW~~~eEi~f~~L~Kl~l~~v~~~eDi~~~G~l~~Ydk~~Dri~~k~~~~L~~-~~~~~~~~tTsdDPvi~~la 241 (546)
=|.+-..|....- . .+.-+.+|.++|+|..|.|.|-|++.|..+.--+ +-+-....-|.+-|||.+=+
T Consensus 103 Iirfy~SW~d~~n--------~---~in~iTEL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDL 171 (632)
T KOG0584|consen 103 IIRFYDSWVDTDN--------K---TINFITELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDL 171 (632)
T ss_pred eeeeeeheecCCC--------c---eeeeeeecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCCCCcccccc
Confidence 4667777875432 1 2334567999999999999999999885554444 22333345678889998643
Q ss_pred hc--------CCcEeehHHHHHHHhhcCCcc
Q psy6476 242 KT--------EGNVYATDTILATLMCCTRSN 264 (546)
Q Consensus 242 ~~--------~~~VfaTD~ILa~LM~a~RSv 264 (546)
|= -|.|=.=|.=||+||=.+...
T Consensus 172 KCDNIFinG~~G~VKIGDLGLAtl~r~s~ak 202 (632)
T KOG0584|consen 172 KCDNIFVNGNLGEVKIGDLGLATLLRKSHAK 202 (632)
T ss_pred ccceEEEcCCcCceeecchhHHHHhhccccc
Confidence 11 234556688899998766544
No 9
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=24.23 E-value=1e+02 Score=31.08 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=41.5
Q ss_pred CCCcEEEEeeecCchhhhhhhcccccCchhhHHHHHHHHHhC-CCccEEEEecCCCCeEEEE
Q psy6476 463 ATRHVILGTQQYKPAEFAGQINLNMDNAWGILRCIIDICLKQ-KDGKYLIMKDPNKPLIRLY 523 (546)
Q Consensus 463 ~~~HvILg~q~~kp~~fA~Qi~L~~~N~WGIvr~iid~~~k~-~dGkYvl~KDPnK~~irlY 523 (546)
+.-|+-+|..+|++++++..|. .++..|+..+-+- ..=+-+.+|-..-|.|+||
T Consensus 162 ~~i~v~VG~~~~~~e~l~eNi~-------avl~~i~~~~~kg~~~Iksv~lktTmgp~v~v~ 216 (216)
T PTZ00029 162 LCLGVAVGNVEMTEEQLRQNIV-------LSINFLVSLLKKNWQNIKTLHIKSTMGKPQRIY 216 (216)
T ss_pred CEEEEEEcCCCCCHHHHHHHHH-------HHHHHHHHHhccccccEeEEEEECCCCCCEeCC
Confidence 4569999999999999998765 6777777776432 1235678898888988886
No 10
>PF14320 Paramyxo_PCT: Phosphoprotein P region PCT disordered
Probab=22.28 E-value=49 Score=34.03 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.8
Q ss_pred ccccCCCChHHHHHhhhc
Q psy6476 226 FHTVTTTDDPIIRKLSKT 243 (546)
Q Consensus 226 ~~~~tTsdDPvi~~la~~ 243 (546)
-|.++-++||+||+|.++
T Consensus 261 efecsgsedpiiqel~ke 278 (313)
T PF14320_consen 261 EFECSGSEDPIIQELLKE 278 (313)
T ss_pred hhccCCCCCHHHHHHHHc
Confidence 357899999999999976
No 11
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=20.93 E-value=1.1e+02 Score=26.75 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCCccEEEEecCCCCeEEEEeCCCC
Q psy6476 504 QKDGKYLIMKDPNKPLIRLYDIPDN 528 (546)
Q Consensus 504 ~~dGkYvl~KDPnK~~irlY~vp~d 528 (546)
.+++|||.|=+..+..|++|++-+|
T Consensus 62 s~~~k~lyVa~~~~~~I~vy~~~~~ 86 (86)
T PF01731_consen 62 SPDKKYLYVASSLAHSIHVYKRHKD 86 (86)
T ss_pred cCCCCEEEEEeccCCeEEEEEecCC
Confidence 6789999999999999999998654
Done!