Query psy6476
Match_columns 546
No_of_seqs 117 out of 172
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:05:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fqi_A Protein DOM3Z, DOM-3 ho 97.9 0.00039 1.3E-08 73.9 18.0 229 244-528 145-388 (417)
2 4gps_A KLLA0E02245P; decapping 97.7 0.0007 2.4E-08 72.0 16.6 213 244-519 175-410 (423)
3 3fqg_A Protein DIN1; hydrolase 97.4 0.012 4.1E-07 61.4 20.9 222 244-527 87-354 (360)
4 5nul_A Flavodoxin; electron tr 23.3 1.1E+02 0.0037 25.8 5.1 45 430-475 10-57 (138)
5 2fz5_A Flavodoxin; alpha/beta 22.9 1.2E+02 0.004 25.1 5.2 45 430-475 11-58 (137)
6 4g6x_A Glyoxalase/bleomycin re 20.5 71 0.0024 27.3 3.4 25 504-528 130-154 (155)
7 2heo_A Z-DNA binding protein 1 16.4 24 0.00081 27.4 -0.6 38 474-511 26-65 (67)
8 2rkl_A Vacuolar protein sortin 14.5 83 0.0028 24.4 2.0 18 426-443 14-31 (53)
9 2hwn_E A kinase binding peptid 13.9 76 0.0026 21.0 1.4 16 490-505 5-20 (26)
10 1czn_A Flavodoxin; FMN binding 12.8 2.4E+02 0.0082 24.4 4.9 45 430-475 12-58 (169)
No 1
>3fqi_A Protein DOM3Z, DOM-3 homolog Z; hydrolase, protein binding; HET: EPE; 2.01A {Mus musculus} PDB: 3fqj_A*
Probab=97.88 E-value=0.00039 Score=73.85 Aligned_cols=229 Identities=16% Similarity=0.272 Sum_probs=140.9
Q ss_pred CCcEeehHHHHHHHhhcCCcc-ccceEEEEEECCEEEEEcCCCCccceeeecCCCCCCCCCCCCCCCChhhhhHHHHHHH
Q psy6476 244 EGNVYATDTILATLMCCTRSN-YSWDIVIEKIGDKLFFDKRDNTEFDLLTVNETSQDPPSDEQTSINSPRNLALEATFIN 322 (546)
Q Consensus 244 ~~~VfaTD~ILa~LM~a~RSv-YsWDIvv~k~g~klffDKRd~s~~D~lTVnEta~~pP~dd~~~iN~~~~L~~EAT~IN 322 (546)
.+.|+++=-+|-.|||++-.. -+|.|.|++.+|.|||.+.+.. .... +. . +...+..+.+|-=
T Consensus 145 ~aDfVT~Rg~L~kIm~tpye~~~~~~i~v~~~~GtIyl~~~~~~-----------~~~~-~~---~-~~~~~~~~~~y~G 208 (417)
T 3fqi_A 145 AGATVTWRGHLTKLLTTPYERQEGWQLAASRFQGTLYLSEVETP-----------AARA-QR---L-ARPPLLRELMYMG 208 (417)
T ss_dssp GGCEEEEHHHHHHHHHGGGCCSCCEEEEEEEETTEEEEEEECCH-----------HHHH-HH---H-TCCHHHHHHHHHH
T ss_pred cceEEcchHHHHHHHhCcccCCCCeEEEEEEECCEEEEEecCch-----------hhhh-cc---c-cCChhHHHHHHHH
Confidence 457999999999999998654 4799999999999999763210 0000 00 0 0112445556666
Q ss_pred HHHHHHHhhcCCccccCCCCCCCCCcchhhcccccccceeeEEeecCCCeeEEEeeeeceeeeCCC---CCcceEEEEee
Q psy6476 323 HNFSQQVLKSGDARHSFDNPNPFISEEEEEEGEVASVAYKYRKWDLGEGIGLVARCEHDGVLASPN---GDLQFLNIKAL 399 (546)
Q Consensus 323 ~nF~~Qvl~~~~~~~~~~~pnPF~~~~~~~~~~~as~~YrYRk~~L~~~i~livR~Evda~~~~~~---~~~~~~~i~AL 399 (546)
..|-+-++... .. +.++|- +. ......=|-=-+-.|++ +.|+..+||||+-..+. +-..||-+|+-
T Consensus 209 yKFE~~~T~~~--p~--~~~~~~----~~--Vn~~~qf~sVvrt~lg~-~~ll~~gEVDaid~~~~~~~~~~~yVELKTs 277 (417)
T 3fqi_A 209 YKFEQYMCADK--PG--GSPDPS----GE--VNTNVAYCSVLRSRLGN-HPLLFSGEVDCLNPQAPCTQPPSCYVELKTS 277 (417)
T ss_dssp HHHHHHHEESS--TT--CCCCTT----SC--EETTCEEEEEEEEEETT-EEEEEEEECCEECTTCSSCSTTTTEEEEEEE
T ss_pred HHHHHhhhcCC--CC--CCcCcc----cc--ccCCceEEEEEEeeeCC-eeEEEeeeeccccCCCcCCCCCceeEEEEEE
Confidence 67877665432 11 112221 00 00010011223344665 89999999999942211 11479999997
Q ss_pred ccccccCCCCchhhhhhhhhccchhhHHhhhchhhHHHHHHHHHhcCCceeeEeEEeecccCCCCCcEEEEeeecCchhh
Q psy6476 400 NEWDSKLSGGVEWRQKLDVQRGAVLANELRNNSCKLAKWTVQALLAGSAQIKFGYVSRAQVRDATRHVILGTQQYKPAEF 479 (546)
Q Consensus 400 NE~d~k~~g~~dWR~kLdsQrGAvlAtE~kNNs~KlAkWt~qa~Lagad~mKlGfVSR~~p~D~~~HvILg~q~~kp~~f 479 (546)
-+.... .+|+.- +-+||.||=+||.|+|+..|=+||-.+ +.+|..++.|++.++
T Consensus 278 ~~~~~~----~~~~~f---------------~r~Kllk~W~QSFL~GVp~IivGfRD~-------~g~l~~ie~~~t~eI 331 (417)
T 3fqi_A 278 KEMHSP----GQWRSF---------------YRHKLLKWWAQSFLPGVPHVVAGFRNP-------EGFVCSLKTFPTMEM 331 (417)
T ss_dssp ECCCSH----HHHHHH---------------HHHHHHHHHHHHHTTTCCEEEEEEECT-------TSEEEEEEEEEGGGG
T ss_pred ecccCh----hhhhhh---------------hHHHHHHHHHHHhhcCCCEEEEEEECC-------CCcEEEEEEEEhhhh
Confidence 765322 244421 236999999999999999999999532 468889999999998
Q ss_pred hhhhcccccCchhhHHHH------H---HHHHhCC--CccEEEEecCCCCeEEEEeCCCC
Q psy6476 480 AGQINLNMDNAWGILRCI------I---DICLKQK--DGKYLIMKDPNKPLIRLYDIPDN 528 (546)
Q Consensus 480 A~Qi~L~~~N~WGIvr~i------i---d~~~k~~--dGkYvl~KDPnK~~irlY~vp~d 528 (546)
...+.- -.+.|-.--|+ + ..+++.+ .--|+|-=||++. ..|++.++
T Consensus 332 p~l~k~-~~~~W~~~vc~~f~~~~L~~Ik~~v~~Dd~~~vy~~~~~~~~~--v~y~~~~~ 388 (417)
T 3fqi_A 332 FENVRN-DREGWNPSVCMNFCAAFLSFAQSTVVQDDPRLVHLFSWEPGGP--VTVSVHRD 388 (417)
T ss_dssp GGGTTT-CTTCCCHHHHHHHHHHHHHHHHHHCCSBCTTEEEEEEECTTSC--BEEEEEES
T ss_pred hhhhhh-ccCCCCHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEcCCCc--EEEEecCC
Confidence 866542 24557544332 2 2223322 2557877899985 35887554
No 2
>4gps_A KLLA0E02245P; decapping, 5'-3' exoribonuclease, HYDR; HET: CIT; 2.40A {Kluyveromyces lactis} PDB: 4gpu_A
Probab=97.72 E-value=0.0007 Score=71.99 Aligned_cols=213 Identities=13% Similarity=0.202 Sum_probs=128.6
Q ss_pred CCcEeehHHHHHHHhhcCCccccceE-EEEEECCEEEEEcCCCCccceeeecCCCCCCCCCCCCCCCChhhhhHHHHHHH
Q psy6476 244 EGNVYATDTILATLMCCTRSNYSWDI-VIEKIGDKLFFDKRDNTEFDLLTVNETSQDPPSDEQTSINSPRNLALEATFIN 322 (546)
Q Consensus 244 ~~~VfaTD~ILa~LM~a~RSvYsWDI-vv~k~g~klffDKRd~s~~D~lTVnEta~~pP~dd~~~iN~~~~L~~EAT~IN 322 (546)
.+.|++.=-+|..|||++-..-.|.+ .+.+.++.|||...... ..+...+ ++...+..+.+|-=
T Consensus 175 dadfVT~RG~LtKIm~tPYe~~~~~~~~a~~~~g~ifl~~~~~~-----------e~~~~~~----~~~~~~~k~m~YwG 239 (423)
T 4gps_A 175 KTTFVSLRHHIIDIIMCPFLDEPLSLLMTVQPDKNILISVDKSK-----------DKPNGIH----ETRNSFNKKICYTG 239 (423)
T ss_dssp SEEEEEEHHHHHHHHHGGGCSSCEEEEEEECTTSCEEEECC-------------------------------CHHHHHHH
T ss_pred CCeEEcccHHHHHHHhCcccCCCceeEEEEEECCEEEEEeccch-----------hcccccc----cCccHHHHHHHHhh
Confidence 34899999999999999977766554 57777899998643111 0111000 11223334555665
Q ss_pred HHHHHHHhhcCCccccCCCCCCCCCcchhhcccccccceeeEEeecCCCeeEEEeeeeceeeeCCCCCcceEEEEeeccc
Q psy6476 323 HNFSQQVLKSGDARHSFDNPNPFISEEEEEEGEVASVAYKYRKWDLGEGIGLVARCEHDGVLASPNGDLQFLNIKALNEW 402 (546)
Q Consensus 323 ~nF~~Qvl~~~~~~~~~~~pnPF~~~~~~~~~~~as~~YrYRk~~L~~~i~livR~Evda~~~~~~~~~~~~~i~ALNE~ 402 (546)
..|-+-+.... . ..|- +..+ + =|-=-+-.|++.+.|+..+||||+-. . ...||-+|+--+.
T Consensus 240 yKFEq~~Te~~-~------~~~V-n~~e----q----fcsVVrT~lgg~ikLL~gaEVDcid~-~--~~~yVELKTs~~~ 300 (423)
T 4gps_A 240 FALEDLLIESP-T------EGHI-LEHE----L----YYSIVHGSLNDEIDLLIQAEMDSINT-L--TDTYTEIKSSVHF 300 (423)
T ss_dssp HHHHHHHBC-----------------CE----E----EEEEEEEECSSSEEEEEEEECCEEET-T--TTEEEEEEEECCC
T ss_pred hhhhhhhccCC-C------CCCc-ccCc----c----EEEEEEcccCCCceEEEeeccccccC-C--CCceEEEEecccc
Confidence 66755543211 0 0021 1111 1 12222345676799999999999842 1 2369999996433
Q ss_pred cccCCCCchhhhhhhhhccchhhHHhhhchhhHHHHHHHHHhcCCceeeEeEEeecccCCCCCcEEEEeeecCchhhhhh
Q psy6476 403 DSKLSGGVEWRQKLDVQRGAVLANELRNNSCKLAKWTVQALLAGSAQIKFGYVSRAQVRDATRHVILGTQQYKPAEFAGQ 482 (546)
Q Consensus 403 d~k~~g~~dWR~kLdsQrGAvlAtE~kNNs~KlAkWt~qa~Lagad~mKlGfVSR~~p~D~~~HvILg~q~~kp~~fA~Q 482 (546)
+ ..| .++-.||-||=+||.|+|...|=+|| ||...++|..++.|++.++...
T Consensus 301 --r----~~~----------------~~~rrKLLKwW~QSFLlGVpkIIVGf------RDd~~GiL~~Ie~~~T~EIP~~ 352 (423)
T 4gps_A 301 --K----LGN----------------TYHRRKLLRMWIQTNLLPKSDLLIGF------RNSYSNELEQLKAYKIQDIYHK 352 (423)
T ss_dssp --C----TTC----------------HHHHHHHHHHHHHHHTSSSCEEEEEE------ECTTTCBEEEEEEECHHHHHHH
T ss_pred --c----ccc----------------hhhHHHHHHHHHHHhhcCCCEEEEEE------ecCCCCEEEEEEEEEHHHHHHH
Confidence 1 122 12457999999999999999999999 5777789999999999999877
Q ss_pred hcccccCch--------------hhHHHHHHHHHh--------CCCccEEEEecCCCCe
Q psy6476 483 INLNMDNAW--------------GILRCIIDICLK--------QKDGKYLIMKDPNKPL 519 (546)
Q Consensus 483 i~L~~~N~W--------------GIvr~iid~~~k--------~~dGkYvl~KDPnK~~ 519 (546)
++=. .+.| ..++.|+..+.+ ...-.|.+-=||+..+
T Consensus 353 vk~~-~~~W~~~~CiNF~a~i~~~wL~~ii~~I~~~~~~~~~~~~~~~f~v~~D~~~~i 410 (423)
T 4gps_A 353 INNS-SIVGKPGKFYKFNPNVANDWFQHIFQVLKQNLLLLSQESTSTTFKVQIDTNLTL 410 (423)
T ss_dssp HCCT-TGGGSCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCSCSEEEEEECTTCEE
T ss_pred HhcC-CCCCCcchhhCcCHHHHHHHHHHHHHHhhhhhccccCCCCceEEEEEECCCceE
Confidence 6432 1222 124555544432 2335677777887653
No 3
>3fqg_A Protein DIN1; hydrolase, mRNA processing, nucleus, phosphoprotein, rRNA processing, transcription, transcription regulation; 2.00A {Schizosaccharomyces pombe} PDB: 3fqd_B
Probab=97.43 E-value=0.012 Score=61.38 Aligned_cols=222 Identities=15% Similarity=0.241 Sum_probs=133.0
Q ss_pred CCcEeehHHHHHHHhhcCCccc-cce----EEEEEECCEEEEEcCCCCccceeeecCCCCCCCCCCCCCCCChhhhhHHH
Q psy6476 244 EGNVYATDTILATLMCCTRSNY-SWD----IVIEKIGDKLFFDKRDNTEFDLLTVNETSQDPPSDEQTSINSPRNLALEA 318 (546)
Q Consensus 244 ~~~VfaTD~ILa~LM~a~RSvY-sWD----Ivv~k~g~klffDKRd~s~~D~lTVnEta~~pP~dd~~~iN~~~~L~~EA 318 (546)
.+.|+++=-+|--|||++-... +|. |.++ |+.+|++++... |+. ++ .-...
T Consensus 87 ~adfVt~Rg~L~kim~tPye~~~~w~~~~vm~a~--n~iy~~~~~~~~--------~~~--~~------------~~~~~ 142 (360)
T 3fqg_A 87 NSSFLTWRGLITKIMCAPLDPRNHWETYLVMDPT--SGIIMMEERTRS--------ETS--YA------------NQDRM 142 (360)
T ss_dssp CSSEEEEHHHHHHHHHTTTCTTCCEEEEEEECTT--TCCEEEECCC-----------------------------CCSHH
T ss_pred ccEEEeeHHHHHHHHhCcccCCCCcceeeeEEEe--CCEEEEeecccc--------CCC--ch------------HHHHh
Confidence 6789999999999999997654 899 6666 666666541100 110 00 11234
Q ss_pred HHHHHHHHHHHhhcCCc----cccCCCCCCCCCcchhhcccccccceeeEEeecCCCeeEEEeeeeceeeeC-CC-----
Q psy6476 319 TFINHNFSQQVLKSGDA----RHSFDNPNPFISEEEEEEGEVASVAYKYRKWDLGEGIGLVARCEHDGVLAS-PN----- 388 (546)
Q Consensus 319 T~IN~nF~~Qvl~~~~~----~~~~~~pnPF~~~~~~~~~~~as~~YrYRk~~L~~~i~livR~Evda~~~~-~~----- 388 (546)
+|-=-.|-+-++..... +-..+ +.|- .+ .....-=|-=-+-.|++ +.||.-+||||+... +.
T Consensus 143 ~y~GyKFE~l~T~~~p~~~~sr~~ie-~~~~-~~-----Vn~~~qf~sVvrt~lg~-~~ll~~aEVDci~d~~p~~~~~~ 214 (360)
T 3fqg_A 143 CYWGYKFEAISTLPEIWDACSRDQIE-QRDN-QD-----VVPDEQYCSIVKINIGK-SKLILAGEVDCIWDKKPCSAKES 214 (360)
T ss_dssp HHHHHHHHHHTEEECCTTC-------------CC-----BCTTSEEEEEEEEEETT-EEEEEEEECCEESSCCCC-----
T ss_pred cchhHhHHHHhccCCCCccccccccc-cccc-cc-----ccCCccEEEEEEeecCC-eeEEEecccceecCCCccccccc
Confidence 45555676555433210 00011 1110 00 00011112233455774 999999999999421 11
Q ss_pred ----------------C--CcceEEEEeeccccccCCCCchhhhhhhhhccchhhHHhhhchhhHHHHHHHHHhcCCcee
Q psy6476 389 ----------------G--DLQFLNIKALNEWDSKLSGGVEWRQKLDVQRGAVLANELRNNSCKLAKWTVQALLAGSAQI 450 (546)
Q Consensus 389 ----------------~--~~~~~~i~ALNE~d~k~~g~~dWR~kLdsQrGAvlAtE~kNNs~KlAkWt~qa~Lagad~m 450 (546)
+ ...||-+|+--+.... + .=++ .||-||=+||-|+|+..|
T Consensus 215 ~~~~~~~~~~~d~~~~~~~~~~yVELKTs~~~~~~--------------~-----~~f~---~Kllk~W~QSFL~Gv~~I 272 (360)
T 3fqg_A 215 DVHSDDGTIEEDASNAENPNLHYVELKTSKKYPLE--------------N-----YGMR---KKLLKYWAQSFLLGIGRI 272 (360)
T ss_dssp ----------------CCSGGGEEEEEEECCCCTT--------------C-----HHHH---HHHHHHHHHHHHHTCCEE
T ss_pred cccccccccccccccccCCCCcEEEEEeeccccCc--------------c-----hhHH---HHHHHHHHHHhccCCCEE
Confidence 2 2468888886654322 1 0011 399999999999999999
Q ss_pred eEeEEeecccCCCCCcEEEEeeecCchhhhhhhcc-cccCchh----------hHHHHHHHHHhCCCc--cEEEEecCCC
Q psy6476 451 KFGYVSRAQVRDATRHVILGTQQYKPAEFAGQINL-NMDNAWG----------ILRCIIDICLKQKDG--KYLIMKDPNK 517 (546)
Q Consensus 451 KlGfVSR~~p~D~~~HvILg~q~~kp~~fA~Qi~L-~~~N~WG----------Ivr~iid~~~k~~dG--kYvl~KDPnK 517 (546)
=+||=.+ +-+|-.++.|.+.++-..+.= +-.+.|- +|..|-+. ++..|+ -|.|--+|+.
T Consensus 273 vvGfRd~-------~g~v~~ie~~~t~eiP~~~~~~~~~~~W~~~~C~~f~~~~L~~ik~~-v~~~~~~~v~~~~~~~~~ 344 (360)
T 3fqg_A 273 IIGFRDD-------NGILIEMKELFTHQIPKMLRPYFKPNDWTPNRLLVVLEHALEWIKQT-VKQHPPSTEFTLSYTGGS 344 (360)
T ss_dssp EEEEECT-------TCBEEEEEEEETTHHHHHHGGGCCTTCCCHHHHHHHHHHHHHHHHHH-HTTSCTTCEEEEEECSTT
T ss_pred EEEEEcC-------CCcEEEEEEEEhhHhHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHh-cccCCCceEEEEEEeCCC
Confidence 9999532 246778999999999766543 2346673 34444443 344456 7999999999
Q ss_pred CeEEEEeCCC
Q psy6476 518 PLIRLYDIPD 527 (546)
Q Consensus 518 ~~irlY~vp~ 527 (546)
++|-++.+-+
T Consensus 345 ~~i~~~~~~~ 354 (360)
T 3fqg_A 345 KLVLRQIILE 354 (360)
T ss_dssp EEEEEECC--
T ss_pred CeEEEeehhh
Confidence 9999998754
No 4
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=23.35 E-value=1.1e+02 Score=25.76 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=31.0
Q ss_pred hchhhHHHHHHHHHhc-CCceeeEeEEeecccC--CCCCcEEEEeeecC
Q psy6476 430 NNSCKLAKWTVQALLA-GSAQIKFGYVSRAQVR--DATRHVILGTQQYK 475 (546)
Q Consensus 430 NNs~KlAkWt~qa~La-gad~mKlGfVSR~~p~--D~~~HvILg~q~~k 475 (546)
-|+-++|+++++.+-. |. ..++=-++...+. ....++|||+-+|-
T Consensus 10 GnT~~iA~~ia~~l~~~g~-~v~~~~~~~~~~~~l~~~d~iiig~pty~ 57 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGK-DVNTINVSDVNIDELLNEDILILGCSAMT 57 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTC-CCEEEEGGGCCHHHHTTCSEEEEEECCBT
T ss_pred chHHHHHHHHHHHHHHCCC-eEEEEEhhhCCHHHHhhCCEEEEEcCccC
Confidence 4889999999998865 54 2344344444332 36789999999884
No 5
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=22.95 E-value=1.2e+02 Score=25.14 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=28.9
Q ss_pred hchhhHHHHHHHHHhc-CCceeeEeEEeecccC--CCCCcEEEEeeecC
Q psy6476 430 NNSCKLAKWTVQALLA-GSAQIKFGYVSRAQVR--DATRHVILGTQQYK 475 (546)
Q Consensus 430 NNs~KlAkWt~qa~La-gad~mKlGfVSR~~p~--D~~~HvILg~q~~k 475 (546)
-|+.+||+++++.+-+ |.+ +.+=-+....+. ....++|||+-+|-
T Consensus 11 GnT~~~a~~i~~~l~~~g~~-v~~~~~~~~~~~~l~~~d~vi~g~p~y~ 58 (137)
T 2fz5_A 11 GNTEAMANEIEAAVKAAGAD-VESVRFEDTNVDDVASKDVILLGCPAMG 58 (137)
T ss_dssp SHHHHHHHHHHHHHHHTTCC-EEEEETTSCCHHHHHTCSEEEEECCCBT
T ss_pred ChHHHHHHHHHHHHHhCCCe-EEEEEcccCCHHHHhcCCEEEEEccccC
Confidence 5889999999998754 542 222222222221 25789999999883
No 6
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=20.49 E-value=71 Score=27.28 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=20.1
Q ss_pred CCCccEEEEecCCCCeEEEEeCCCC
Q psy6476 504 QKDGKYLIMKDPNKPLIRLYDIPDN 528 (546)
Q Consensus 504 ~~dGkYvl~KDPnK~~irlY~vp~d 528 (546)
.+.|+++.++||.--.|.|++++++
T Consensus 130 ~~~g~~~~f~DPdGn~iel~q~~~d 154 (155)
T 4g6x_A 130 MGPVVTAILDDTCGNLIQLMQIAYD 154 (155)
T ss_dssp CSSCEEEEEECSSSCEEEEEEC---
T ss_pred cCCeEEEEEECCCCCEEEEEEECCC
Confidence 4568999999999999999998864
No 7
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=16.41 E-value=24 Score=27.43 Aligned_cols=38 Identities=5% Similarity=-0.053 Sum_probs=27.1
Q ss_pred cCchhhhhhhcccccCchhhHHHHHHH--HHhCCCccEEE
Q psy6476 474 YKPAEFAGQINLNMDNAWGILRCIIDI--CLKQKDGKYLI 511 (546)
Q Consensus 474 ~kp~~fA~Qi~L~~~N~WGIvr~iid~--~~k~~dGkYvl 511 (546)
.+..++|.++|++-...|.+|+.+.+. +...+.|.|.|
T Consensus 26 ~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y~l 65 (67)
T 2heo_A 26 VAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYWSI 65 (67)
T ss_dssp EEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceEee
Confidence 467899999999999999988887653 22223355543
No 8
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=14.47 E-value=83 Score=24.40 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.0
Q ss_pred HHhhhchhhHHHHHHHHH
Q psy6476 426 NELRNNSCKLAKWTVQAL 443 (546)
Q Consensus 426 tE~kNNs~KlAkWt~qa~ 443 (546)
.|-...+.|.|||.+.||
T Consensus 14 ~~~i~~AqK~aK~AiSAL 31 (53)
T 2rkl_A 14 ASKIEQIQKLAKYAISAL 31 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 346678999999999987
No 9
>2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus}
Probab=13.88 E-value=76 Score=21.05 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=14.2
Q ss_pred chhhHHHHHHHHHhCC
Q psy6476 490 AWGILRCIIDICLKQK 505 (546)
Q Consensus 490 ~WGIvr~iid~~~k~~ 505 (546)
+|.|.+.||.-+|.|.
T Consensus 5 awkiakmiv~dvmqq~ 20 (26)
T 2hwn_E 5 AWKIAKMIVSDVMQQC 20 (26)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6999999999999864
No 10
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=12.78 E-value=2.4e+02 Score=24.40 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=29.1
Q ss_pred hchhhHHHHHHHHHhcCCceeeEeEEeecccC--CCCCcEEEEeeecC
Q psy6476 430 NNSCKLAKWTVQALLAGSAQIKFGYVSRAQVR--DATRHVILGTQQYK 475 (546)
Q Consensus 430 NNs~KlAkWt~qa~Lagad~mKlGfVSR~~p~--D~~~HvILg~q~~k 475 (546)
-|+.++|+++++.+-+. -...+=-++...+. ....++|||+-+|-
T Consensus 12 GnT~~vA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~~d~ii~g~pty~ 58 (169)
T 1czn_A 12 GVTQTIAESIQQEFGGE-SIVDLNDIANADASDLNAYDYLIIGCPTWN 58 (169)
T ss_dssp SHHHHHHHHHHHHHTST-TTEEEEEGGGCCGGGGGGCSEEEEECCEET
T ss_pred cHHHHHHHHHHHHhCcc-cceEEEEhhhCCHhHHhhCCEEEEEecccC
Confidence 58999999999987432 02333223332222 25789999999985
Done!