Query psy6476
Match_columns 546
No_of_seqs 117 out of 172
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 19:06:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6476.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6476hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nrac1 a.4.5.10 (C:9-151) Rep 31.7 6.3 0.00046 33.0 0.9 34 471-504 46-79 (143)
2 d1repc1 a.4.5.10 (C:15-143) Re 17.9 16 0.0011 29.8 0.7 43 470-516 44-86 (129)
3 d1ri6a_ b.69.11.1 (A:) Putativ 14.9 47 0.0034 28.1 3.1 24 504-527 284-307 (333)
4 d1sa3a_ c.52.1.23 (A:) Restric 14.8 41 0.003 31.1 2.8 28 415-446 165-192 (262)
5 d1mkma1 a.4.5.33 (A:1-75) Tran 12.4 28 0.0021 25.7 0.8 39 473-511 20-60 (75)
6 d1x51a1 d.113.1.3 (A:8-149) A/ 11.4 24 0.0018 28.2 0.1 29 505-533 25-54 (142)
7 d1rwza1 d.131.1.2 (A:1-122) Pr 10.6 1E+02 0.0075 24.5 3.8 42 492-533 9-59 (122)
8 d1ad2a_ e.24.1.1 (A:) Ribosoma 10.6 95 0.0069 27.5 4.0 55 461-522 163-220 (224)
9 d1puna_ d.113.1.1 (A:) Nucleos 9.5 54 0.0039 25.5 1.6 31 504-534 13-44 (129)
10 d1rrqa2 d.113.1.3 (A:234-360) 9.4 31 0.0022 27.4 -0.0 30 503-532 12-42 (127)
No 1
>d2nrac1 a.4.5.10 (C:9-151) Replication initiation protein PI {Escherichia coli [TaxId: 562]}
Probab=31.66 E-value=6.3 Score=33.04 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=31.1
Q ss_pred eeecCchhhhhhhcccccCchhhHHHHHHHHHhC
Q psy6476 471 TQQYKPAEFAGQINLNMDNAWGILRCIIDICLKQ 504 (546)
Q Consensus 471 ~q~~kp~~fA~Qi~L~~~N~WGIvr~iid~~~k~ 504 (546)
+..++..|||..+|++..|++.-|+.+++.+++.
T Consensus 46 ~~~is~~e~~~~~gv~~~~aY~~Lk~a~~~L~~r 79 (143)
T d2nrac1 46 VFKIRAEDLAALAKITPSLAYRQLKEGGKLLGAS 79 (143)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEHHHHHHHHCCCchHHHHHHHHHHHHHHhC
Confidence 4566889999999999999999999999999985
No 2
>d1repc1 a.4.5.10 (C:15-143) RepE54 {Escherichia coli, mini-F plasmid [TaxId: 562]}
Probab=17.91 E-value=16 Score=29.81 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=33.8
Q ss_pred EeeecCchhhhhhhcccccCchhhHHHHHHHHHhCCCccEEEEecCC
Q psy6476 470 GTQQYKPAEFAGQINLNMDNAWGILRCIIDICLKQKDGKYLIMKDPN 516 (546)
Q Consensus 470 g~q~~kp~~fA~Qi~L~~~N~WGIvr~iid~~~k~~dGkYvl~KDPn 516 (546)
++..+...|||..+|++..|++.-++-+++.+++ +.+.+.+|.
T Consensus 44 ~~~~i~~~e~~~~~g~~~~~~y~~l~~a~~~L~~----r~i~i~~~~ 86 (129)
T d1repc1 44 GICEIHVAKYAEIFGLTSAEASKDIRQALKSFAG----KEVVFYRPE 86 (129)
T ss_dssp CEEEEEHHHHHHHTTCCHHHHHHHHHHHHHTTTT----CEEECC---
T ss_pred cEEEEEHHHHHHHHCCCchhHHHHHHHHHHHHhc----CeEEEEccc
Confidence 4678899999999999999999999999999985 344444443
No 3
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}
Probab=14.89 E-value=47 Score=28.06 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.1
Q ss_pred CCCccEEEEecCCCCeEEEEeCCC
Q psy6476 504 QKDGKYLIMKDPNKPLIRLYDIPD 527 (546)
Q Consensus 504 ~~dGkYvl~KDPnK~~irlY~vp~ 527 (546)
-||||||++=...-..|++|++-.
T Consensus 284 spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 284 DHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp CTTSSEEEEECTTTCEEEEEEEET
T ss_pred eCCCCEEEEEECCCCeEEEEEEEC
Confidence 689999999988888999998854
No 4
>d1sa3a_ c.52.1.23 (A:) Restriction endonuclease MspI {Moraxella sp. [TaxId: 479]}
Probab=14.80 E-value=41 Score=31.07 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=24.1
Q ss_pred hhhhhccchhhHHhhhchhhHHHHHHHHHhcC
Q psy6476 415 KLDVQRGAVLANELRNNSCKLAKWTVQALLAG 446 (546)
Q Consensus 415 kLdsQrGAvlAtE~kNNs~KlAkWt~qa~Lag 446 (546)
++..|+ |-.||.++.-||++|.+ ++-++
T Consensus 165 ~~~~q~---l~e~L~~y~erli~W~v-t~~~~ 192 (262)
T d1sa3a_ 165 PVQKQR---LTELLEPYRERFIRWCV-TLRAE 192 (262)
T ss_dssp HHHHHH---HHHHHGGGHHHHHHHHH-HSCSS
T ss_pred hhHHHH---HHHHHHHHHHHHHHHHH-hcCCC
Confidence 788887 99999999999999998 55554
No 5
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.45 E-value=28 Score=25.75 Aligned_cols=39 Identities=23% Similarity=0.447 Sum_probs=30.0
Q ss_pred ecCchhhhhhhcccccCchhhHHHHHHH--HHhCCCccEEE
Q psy6476 473 QYKPAEFAGQINLNMDNAWGILRCIIDI--CLKQKDGKYLI 511 (546)
Q Consensus 473 ~~kp~~fA~Qi~L~~~N~WGIvr~iid~--~~k~~dGkYvl 511 (546)
.....++|.+++++-+..--++.++++. +.+.++|.|.|
T Consensus 20 ~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~~g~y~l 60 (75)
T d1mkma1 20 DVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVP 60 (75)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCCEee
Confidence 3578999999999999988888887764 33445677765
No 6
>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.37 E-value=24 Score=28.22 Aligned_cols=29 Identities=24% Similarity=0.603 Sum_probs=23.1
Q ss_pred CCccEEEEecCCCCeEE-EEeCCCCCCCCC
Q psy6476 505 KDGKYLIMKDPNKPLIR-LYDIPDNTFDSD 533 (546)
Q Consensus 505 ~dGkYvl~KDPnK~~ir-lY~vp~d~fe~~ 533 (546)
.+|++||.|.|.+.++- ||+.|....|+.
T Consensus 25 ~~~~iLl~kR~~~g~l~GlWefP~~~~~~~ 54 (142)
T d1x51a1 25 LGAQILLVQRPNSGLLAGLWEFPSVTWEPS 54 (142)
T ss_dssp SSEEEEEEECCCCSTTCSCEECCEEECCSS
T ss_pred CCCEEEEEECCCCCCCCcceeeeEeeccCC
Confidence 47999999999987765 999997665543
No 7
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.65 E-value=1e+02 Score=24.48 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhC---------CCccEEEEecCCCCeEEEEeCCCCCCCCC
Q psy6476 492 GILRCIIDICLKQ---------KDGKYLIMKDPNKPLIRLYDIPDNTFDSD 533 (546)
Q Consensus 492 GIvr~iid~~~k~---------~dGkYvl~KDPnK~~irlY~vp~d~fe~~ 533 (546)
.++|.|++.+.+. ++|-++-.=||.+-.+--..+|.+.|++=
T Consensus 9 ~~~k~i~~~l~~l~~e~~~~~~~~Gi~iq~mD~s~v~Lv~l~L~~~~F~~Y 59 (122)
T d1rwza1 9 ELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVY 59 (122)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEE
T ss_pred HHHHHHHHHHHHHhceEEEEEccCeEEEEEeCCCcEEEEEEEECcccCeEE
Confidence 4789999998875 68999999999999999999999999973
No 8
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]}
Probab=10.62 E-value=95 Score=27.46 Aligned_cols=55 Identities=16% Similarity=0.347 Sum_probs=38.5
Q ss_pred CCCCCcEEEEeeecCchhhhhhhcccccCchhhHHHHHHHHHhCCCc---cEEEEecCCCCeEEE
Q psy6476 461 RDATRHVILGTQQYKPAEFAGQINLNMDNAWGILRCIIDICLKQKDG---KYLIMKDPNKPLIRL 522 (546)
Q Consensus 461 ~D~~~HvILg~q~~kp~~fA~Qi~L~~~N~WGIvr~iid~~~k~~dG---kYvl~KDPnK~~irl 522 (546)
+...=|+.+|..+|.+++++..| ..++.+|....-+...| +.|.+|-..-|.|||
T Consensus 163 k~g~i~~~IG~~~m~~e~i~eNi-------~~~i~~i~~~~p~~~k~~~ik~v~l~sTmGp~~~i 220 (224)
T d1ad2a_ 163 KTGAIHAPVGKACFPPEKLADNI-------RAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRI 220 (224)
T ss_dssp TTSEEEEEEEETTSCHHHHHHHH-------HHHHHHHHTTCCTTCCSCSEEEEEEECTTSCCEEE
T ss_pred CCceeeeeeccccCCHHHHHHHH-------HHHHHHHHHhCccccCCCeEeEEEEECCCCCCEEe
Confidence 44677999999999999999865 44444443322222234 457889888888887
No 9
>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}
Probab=9.53 E-value=54 Score=25.48 Aligned_cols=31 Identities=6% Similarity=0.298 Sum_probs=24.0
Q ss_pred CCCccEEEEecCCCCeE-EEEeCCCCCCCCCC
Q psy6476 504 QKDGKYLIMKDPNKPLI-RLYDIPDNTFDSDN 534 (546)
Q Consensus 504 ~~dGkYvl~KDPnK~~i-rlY~vp~d~fe~~~ 534 (546)
.++|++||+|.|.++.. -+|++|-+.-|..|
T Consensus 13 ~~~~~vLl~~R~~~~~~~g~W~~PgG~ve~gE 44 (129)
T d1puna_ 13 NENNEIFITRRAADAHMANKLEFPGGKIEMGE 44 (129)
T ss_dssp CTTSCEEEBCCCSSCSCTTCCBCSCCSCTTTS
T ss_pred ECCCEEEEEEecCCCCCCCcEECCcceecCCC
Confidence 46799999998877654 47899988777643
No 10
>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.45 E-value=31 Score=27.40 Aligned_cols=30 Identities=27% Similarity=0.532 Sum_probs=23.4
Q ss_pred hCCCccEEEEecCCCCeE-EEEeCCCCCCCC
Q psy6476 503 KQKDGKYLIMKDPNKPLI-RLYDIPDNTFDS 532 (546)
Q Consensus 503 k~~dGkYvl~KDPnK~~i-rlY~vp~d~fe~ 532 (546)
...+|++||.|.|.+..+ =+|+.|-...|.
T Consensus 12 ~~~~g~iLl~kR~~~~~~~GlWefP~g~~e~ 42 (127)
T d1rrqa2 12 ADDEGRVLIRKRDSTGLLANLWEFPSCETDG 42 (127)
T ss_dssp EESSSEEEEEECCSSSTTTTCEECCEEECTT
T ss_pred EECCCEEEEEECCCCCCCCCceecccccccC
Confidence 356899999999998876 589999765543
Done!