RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6476
         (546 letters)



>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
          domain-containing protein 1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 76

 Score = 27.9 bits (62), Expect = 0.65
 Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 1/43 (2%)

Query: 47 KISDWTGLAFQDKKYINKYQSQFGSGSQYAYYHEEDESTFHLV 89
          KI +   +    ++   +   Q   G     Y      T  L+
Sbjct: 31 KIQELFHVEPGLQRLFYR-GKQMEDGHTLFDYEVRLNDTIQLL 72


>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like
          protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 25.7 bits (56), Expect = 5.9
 Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 1/43 (2%)

Query: 47 KISDWTGLAFQDKKYINKYQSQFGSGSQYAYYHEEDESTFHLV 89
          +I D  GL  + ++                 Y  +D  T  L 
Sbjct: 36 QIEDQQGLPKKQQQLEF-QGQVLQDWLGLGIYGIQDSDTLILS 77


>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
          domain-containing protein 2 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 76

 Score = 25.2 bits (55), Expect = 6.4
 Identities = 4/43 (9%), Positives = 13/43 (30%), Gaps = 1/43 (2%)

Query: 47 KISDWTGLAFQDKKYINKYQSQFGSGSQYAYYHEEDESTFHLV 89
          ++     +  + ++   +   Q  +G     Y         L+
Sbjct: 31 RVWALFDVRPECQRLFYR-GKQLENGYTLFDYDVGLNDIIQLL 72


>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 73

 Score = 25.0 bits (54), Expect = 6.5
 Identities = 5/42 (11%), Positives = 8/42 (19%), Gaps = 1/42 (2%)

Query: 47 KISDWTGLAFQDKKYINKYQSQFGSGSQYAYYHEEDESTFHL 88
           +S   G                        Y   D++   L
Sbjct: 30 VLSLQIGTQPNKIVLQKGGS-VLKDHISLEDYEVHDQTNLEL 70


>d2c2ia1 d.38.1.4 (A:2-150) Hypothetical protein Rv0130
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 149

 Score = 26.2 bits (57), Expect = 6.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 168 SDWVTIEEMDFARFSKLS 185
           SDWVTI + +   F+  +
Sbjct: 20  SDWVTITQEEVNLFADAT 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,076,583
Number of extensions: 96099
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 7
Length of query: 546
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 456
Effective length of database: 1,171,896
Effective search space: 534384576
Effective search space used: 534384576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)