BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy648
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2BD66|BRK1B_XENLA Probable protein BRICK1-B OS=Xenopus laevis GN=brk1-b PE=3 SV=1
Length = 75
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 60/70 (85%)
Query: 3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
A + +Q++I QDWANREYIE+IT SIKKI DFLNSFDMSCRSRLA LNEKLTTLERRI
Sbjct: 2 ASQEDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTTLERRI 61
Query: 63 EYLEARKSHG 72
EY+EAR + G
Sbjct: 62 EYIEARVTKG 71
>sp|Q91VR8|BRK1_MOUSE Protein BRICK1 OS=Mus musculus GN=Brk1 PE=2 SV=1
Length = 75
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 60/70 (85%)
Query: 3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
A + +Q++I QDWANREYIEIIT SIKKI+DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct: 2 AGQEDPVQREIHQDWANREYIEIITSSIKKISDFLNSFDMSCRSRLATLNEKLTALERRI 61
Query: 63 EYLEARKSHG 72
EY+EAR + G
Sbjct: 62 EYIEARVTKG 71
>sp|Q8WUW1|BRK1_HUMAN Protein BRICK1 OS=Homo sapiens GN=BRK1 PE=1 SV=1
Length = 75
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 59/70 (84%)
Query: 3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
A + +Q++I QDWANREYIEIIT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct: 2 AGQEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61
Query: 63 EYLEARKSHG 72
EY+EAR + G
Sbjct: 62 EYIEARVTKG 71
>sp|Q6P7G6|BRK1A_XENLA Probable protein BRICK1-A OS=Xenopus laevis GN=brk1-a PE=3 SV=1
Length = 75
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 59/70 (84%)
Query: 3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
A + +Q++I QDWANREYIE+IT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct: 2 ASQDDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61
Query: 63 EYLEARKSHG 72
EY+EAR + G
Sbjct: 62 EYIEARVTKG 71
>sp|Q6IQ86|BRK1_DANRE Probable protein BRICK1 OS=Danio rerio GN=brk1 PE=2 SV=1
Length = 75
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 59/70 (84%)
Query: 3 AVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62
A + +Q++I QDWANREYIE+IT SIKKI DFLNSFDMSCRSRLA LNEKLT LERRI
Sbjct: 2 AGQEDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRI 61
Query: 63 EYLEARKSHG 72
EY+EAR + G
Sbjct: 62 EYIEARVTKG 71
>sp|Q54X65|BRK1_DICDI Protein BRICK1 OS=Dictyostelium discoideum GN=brk1 PE=1 SV=1
Length = 68
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 46/55 (83%)
Query: 13 IQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEA 67
IQ+DW RE+IE ++ +I+KI +FLN F++S R++L+ LNEKLT L+R+++YLEA
Sbjct: 7 IQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEA 61
>sp|Q84VA7|BRK1_ORYSJ Probable protein BRICK1 OS=Oryza sativa subsp. japonica
GN=Os02g0829900 PE=3 SV=1
Length = 86
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 42/58 (72%)
Query: 13 IQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKS 70
+Q DW NRE+I I+ +++++ DFL F+ + +S+LA LNEKL LER++E LE + S
Sbjct: 19 VQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEKLDILERKLEVLEVQVS 76
>sp|Q94JY4|BRK1_ARATH Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1
Length = 85
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 42/58 (72%)
Query: 13 IQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKS 70
+Q DW NRE+I I+ +++++ +FL F+ + +S+LA LNEKL LERR+E LE + S
Sbjct: 17 VQADWENREFISHISLNVRRLFEFLVQFESTTKSKLASLNEKLDLLERRLEMLEVQVS 74
>sp|Q8RW98|BRK1_MAIZE Protein BRICK1 OS=Zea mays GN=BRK1 PE=2 SV=1
Length = 84
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 13 IQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEAR 68
+Q DW NRE+I I+ +++++ DFL F+ + +S+LA LNEKL LER++E LE +
Sbjct: 17 VQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEKLDILERKLEVLEVQ 72
>sp|Q6PCD5|RFWD3_HUMAN E3 ubiquitin-protein ligase RFWD3 OS=Homo sapiens GN=RFWD3 PE=1
SV=3
Length = 774
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 44 CRSRLAVLNEKLTTLERRIEYLEARKSH 71
CR +L VL +K T L+RR++ L+ SH
Sbjct: 379 CRLQLQVLTDKCTRLQRRVQDLQKLTSH 406
>sp|Q65527|VP7_ROTBS Outer capsid glycoprotein VP7 OS=Rotavirus C (isolate
Cow/Japan/Shintoku/1991) PE=3 SV=1
Length = 332
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 32 KITDFLNSFDMSCRSRLAVLNEKLT---TLERRIEYL 65
KI+DF+NS +M+C + ++ E L T+E+ E++
Sbjct: 128 KISDFINSIEMTCSYNIVIIPETLANSETIEQVAEWV 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,836,157
Number of Sequences: 539616
Number of extensions: 652556
Number of successful extensions: 2397
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2384
Number of HSP's gapped (non-prelim): 14
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)