Query psy648
Match_columns 72
No_of_seqs 74 out of 76
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 19:10:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_E Probable protein brick1 100.0 7.8E-40 2.7E-44 205.7 9.1 71 1-72 1-71 (75)
2 3pp5_A BRK1, protein brick1; t 100.0 4.3E-36 1.5E-40 187.9 7.6 67 5-71 4-70 (73)
3 3ljm_A Coil Ser L9C; de novo d 94.9 0.041 1.4E-06 28.8 3.8 23 44-66 6-28 (31)
4 1aq5_A Matrilin-1, CMP, cartil 93.7 0.22 7.7E-06 28.3 5.4 33 37-69 14-46 (47)
5 3pp5_A BRK1, protein brick1; t 90.2 1.5 5.1E-05 26.8 6.5 40 20-63 30-69 (73)
6 1zme_C Proline utilization tra 88.9 0.73 2.5E-05 25.6 4.2 27 45-71 43-69 (70)
7 3p8c_E Probable protein brick1 88.5 2.4 8.1E-05 26.0 6.5 38 21-62 31-68 (75)
8 3swy_A Cyclic nucleotide-gated 87.8 0.59 2E-05 26.3 3.2 21 50-70 2-22 (46)
9 2ovc_A Potassium voltage-gated 87.3 1.3 4.5E-05 23.4 4.2 24 42-65 6-29 (33)
10 2pnv_A Small conductance calci 86.8 1.1 3.9E-05 24.7 4.0 26 46-71 16-41 (43)
11 2lw1_A ABC transporter ATP-bin 85.8 1 3.5E-05 27.2 3.8 26 47-72 23-48 (89)
12 2er8_A Regulatory protein Leu3 80.8 0.96 3.3E-05 25.4 2.1 23 45-67 48-70 (72)
13 3hfe_A Potassium voltage-gated 79.9 2.7 9.2E-05 22.0 3.4 21 45-65 9-29 (31)
14 2qfa_B Borealin; three-helical 76.9 5.6 0.00019 23.4 4.6 28 31-58 5-32 (62)
15 3bj4_A Potassium voltage-gated 76.6 3.3 0.00011 23.6 3.4 24 42-65 13-36 (49)
16 1jy2_P Fibrinogen gamma-B chai 76.4 4.2 0.00014 23.2 3.8 21 33-53 25-45 (48)
17 1lwu_B Fibrinogen beta chain; 76.1 5 0.00017 29.8 5.2 49 20-69 8-58 (323)
18 2oqq_A Transcription factor HY 75.0 4.8 0.00016 22.3 3.7 15 51-65 15-29 (42)
19 3swf_A CGMP-gated cation chann 74.5 3 0.0001 25.6 3.1 21 50-70 4-24 (74)
20 1q08_A Zn(II)-responsive regul 73.7 11 0.00037 21.9 5.6 25 45-69 45-69 (99)
21 1g6u_A Domain swapped dimer; d 71.1 7.6 0.00026 21.8 4.0 25 46-70 20-44 (48)
22 2pnv_A Small conductance calci 70.6 6.6 0.00023 21.6 3.6 21 43-63 20-40 (43)
23 3ci9_A Heat shock factor-bindi 68.7 13 0.00044 20.8 4.7 18 45-62 30-47 (48)
24 1buu_A Protein (mannose-bindin 68.3 6.2 0.00021 25.0 3.7 26 42-67 19-44 (168)
25 1gk7_A Vimentin; intermediate 68.3 10 0.00035 20.2 4.0 25 46-70 13-37 (39)
26 3fx7_A Putative uncharacterize 68.0 17 0.00059 22.9 5.7 48 16-66 41-88 (94)
27 2raw_B Borealin; cell cycle, d 67.8 4 0.00014 24.5 2.5 27 32-58 2-28 (68)
28 3viq_B Mating-type switching p 67.3 8 0.00027 24.1 3.9 29 43-71 5-33 (85)
29 3gpv_A Transcriptional regulat 66.1 19 0.00065 23.0 5.8 24 46-69 102-125 (148)
30 3ghg_B Fibrinogen beta chain; 63.3 11 0.00037 29.7 4.9 30 33-62 82-111 (461)
31 3ghg_C Fibrinogen gamma chain; 63.2 11 0.00038 29.0 4.9 31 33-63 25-55 (411)
32 1m1j_C Fibrinogen gamma chain; 63.2 24 0.00081 27.0 6.6 62 8-69 59-135 (409)
33 4e29_A Chimeric WZZB chain len 62.4 33 0.0011 24.5 7.0 41 20-62 104-144 (248)
34 3gp4_A Transcriptional regulat 62.2 25 0.00085 22.4 5.8 24 46-69 88-111 (142)
35 1rtm_1 Mannose-binding protein 60.3 14 0.00048 22.6 4.2 24 45-68 3-26 (149)
36 1r8d_A Transcription activator 58.6 17 0.00058 21.8 4.3 42 29-70 61-106 (109)
37 3gpv_A Transcriptional regulat 58.6 33 0.0011 21.9 6.6 40 30-69 76-118 (148)
38 1m1j_C Fibrinogen gamma chain; 56.9 25 0.00085 26.9 5.8 35 33-67 25-59 (409)
39 3n5l_A Binding protein compone 56.5 15 0.00051 25.4 4.2 27 45-71 281-307 (310)
40 1fxk_A Prefoldin; archaeal pro 56.4 20 0.00069 21.1 4.3 24 46-69 79-102 (107)
41 1q08_A Zn(II)-responsive regul 56.4 27 0.00091 20.2 6.5 41 29-69 18-62 (99)
42 2oqq_A Transcription factor HY 55.2 24 0.00082 19.4 4.1 23 48-70 5-27 (42)
43 3cve_A Homer protein homolog 1 55.0 16 0.00054 22.0 3.6 28 43-70 4-31 (72)
44 3p7i_A PHND, subunit of alkylp 55.0 13 0.00045 26.1 3.7 27 45-71 290-316 (321)
45 2y7c_A Type-1 restriction enzy 54.7 35 0.0012 23.8 5.9 30 31-60 166-195 (464)
46 2vz4_A Tipal, HTH-type transcr 54.7 21 0.00071 21.4 4.2 30 41-70 76-105 (108)
47 3m0d_C TNF receptor-associated 54.6 28 0.00095 19.9 8.0 54 7-60 5-62 (65)
48 3lt7_A Adhesin YADA; adhesion, 53.8 28 0.00096 20.6 4.5 28 37-64 25-52 (64)
49 1go4_E MAD1 (mitotic arrest de 53.3 21 0.00073 22.6 4.2 29 43-71 16-44 (100)
50 3ezh_A Nitrate/nitrite sensor 52.6 21 0.0007 22.3 4.0 41 11-51 63-115 (125)
51 3efg_A Protein SLYX homolog; x 52.4 16 0.00054 21.9 3.3 21 45-65 13-33 (78)
52 1q06_A Transcriptional regulat 51.3 42 0.0014 21.0 5.6 42 28-69 58-109 (135)
53 3coq_A Regulatory protein GAL4 48.7 24 0.00082 19.9 3.6 20 46-65 45-64 (89)
54 1ic2_A Tropomyosin alpha chain 48.4 29 0.00098 20.3 4.0 28 43-70 38-65 (81)
55 2zdi_C Prefoldin subunit alpha 48.4 29 0.00099 22.2 4.3 21 43-63 116-136 (151)
56 1pyi_A Protein (pyrimidine pat 47.0 20 0.00067 20.7 3.1 22 45-66 47-68 (96)
57 1r8e_A Multidrug-efflux transp 46.9 61 0.0021 21.6 6.0 28 42-69 82-109 (278)
58 3u1c_A Tropomyosin alpha-1 cha 46.1 34 0.0012 20.9 4.2 25 45-69 43-67 (101)
59 3mq9_A Bone marrow stromal ant 46.0 82 0.0028 22.8 10.9 47 23-69 420-466 (471)
60 1abz_A Alpha-T-alpha, ATA; de 45.8 23 0.00079 19.1 3.0 22 49-70 6-34 (40)
61 4g1a_A AQ-C16C19 peptide; heli 44.9 8.7 0.0003 19.9 1.1 22 45-66 6-27 (32)
62 1hwt_C Protein (heme activator 43.8 15 0.00053 20.5 2.2 17 53-69 58-74 (81)
63 1m1j_B Fibrinogen beta chain; 43.6 36 0.0012 26.6 4.9 28 33-60 87-114 (464)
64 3c3f_A Alpha/beta peptide with 41.8 27 0.00091 18.5 2.7 22 48-69 3-24 (34)
65 2zhg_A Redox-sensitive transcr 41.8 68 0.0023 20.6 5.4 26 45-70 96-121 (154)
66 2yru_A Steroid receptor RNA ac 41.0 29 0.00099 22.1 3.4 17 55-71 38-54 (118)
67 1lrz_A FEMA, factor essential 40.9 34 0.0012 24.9 4.2 26 44-69 245-270 (426)
68 4aj5_A SKA1, spindle and kinet 40.7 66 0.0023 20.2 8.2 53 10-63 26-78 (91)
69 1pwb_A SP-D, PSP-D, pulmonary 40.6 44 0.0015 21.0 4.2 24 44-67 29-52 (177)
70 1q06_A Transcriptional regulat 40.2 44 0.0015 20.9 4.2 32 32-63 79-110 (135)
71 2xus_A Breast cancer metastasi 40.0 31 0.001 19.4 3.0 17 42-58 28-44 (49)
72 1fzc_C Fibrin; blood coagulati 39.8 36 0.0012 25.2 4.2 26 45-70 24-49 (319)
73 3b8m_A Ferric enterobactin (en 39.6 99 0.0034 21.9 7.8 38 20-59 138-175 (280)
74 1kd8_B GABH BLL, GCN4 acid bas 39.5 30 0.001 18.5 2.7 21 46-66 8-28 (36)
75 2z5i_A TM, general control pro 39.0 47 0.0016 18.4 3.7 20 51-70 10-29 (52)
76 3hh0_A Transcriptional regulat 38.9 33 0.0011 21.9 3.5 41 29-69 63-110 (146)
77 3kqg_A Langerin, C-type lectin 38.2 44 0.0015 20.8 3.9 23 47-69 17-39 (182)
78 1jcd_A Major outer membrane li 38.1 49 0.0017 18.6 3.7 25 46-70 4-28 (52)
79 1jek_A ENV polyprotein; envelo 37.9 26 0.00089 19.1 2.4 17 54-70 21-37 (42)
80 3ghg_B Fibrinogen beta chain; 37.1 1.5E+02 0.0052 23.2 8.5 47 21-69 144-193 (461)
81 3b8o_A Lipopolysaccharide bios 36.5 1.1E+02 0.0037 21.4 7.5 38 20-59 123-160 (265)
82 1k1f_A Breakpoint cluster regi 36.2 69 0.0023 19.4 4.3 30 42-71 36-65 (72)
83 3s4r_A Vimentin; alpha-helix, 36.2 54 0.0019 19.9 4.0 24 46-69 16-39 (93)
84 2l3l_A Tubulin-specific chaper 35.9 35 0.0012 21.5 3.2 35 27-61 71-106 (111)
85 1kd8_A GABH AIV, GCN4 acid bas 35.5 24 0.00083 18.9 2.0 21 49-69 4-24 (36)
86 1nkp_B MAX protein, MYC proto- 35.2 66 0.0023 18.6 6.0 26 46-71 54-79 (83)
87 1avy_A Fibritin, gpwac M; bact 34.6 66 0.0023 19.5 4.1 17 50-66 26-42 (74)
88 3p8c_D Wiskott-aldrich syndrom 33.9 92 0.0032 22.8 5.5 49 21-69 25-80 (279)
89 3plt_A Sphingolipid long chain 33.9 44 0.0015 24.0 3.7 25 46-70 131-155 (234)
90 1m48_A Interleukin-2; four-hel 33.6 21 0.00071 24.0 1.9 32 19-50 82-131 (133)
91 3cvf_A Homer-3, homer protein 33.1 28 0.00095 21.2 2.2 27 44-70 11-37 (79)
92 2y7c_A Type-1 restriction enzy 32.8 1.2E+02 0.0042 21.0 6.0 29 32-60 380-408 (464)
93 1ca9_A TRAF2, protein (TNF rec 32.0 78 0.0027 20.4 4.5 24 45-68 16-39 (192)
94 2wq1_A General control protein 31.2 50 0.0017 17.3 2.7 18 46-63 7-24 (33)
95 2zvf_A Alanyl-tRNA synthetase; 31.2 76 0.0026 20.0 4.2 27 44-70 30-56 (171)
96 2lme_A Adhesin YADA; trimeric 31.0 47 0.0016 20.4 3.1 19 45-63 15-33 (105)
97 1fzc_B Fibrin; blood coagulati 31.0 58 0.002 24.0 4.1 25 45-69 36-60 (328)
98 3t98_B Nucleoporin NUP58/NUP45 30.2 97 0.0033 19.0 4.9 30 35-64 8-37 (93)
99 3m0a_A TNF receptor-associated 29.7 75 0.0026 17.5 6.5 32 37-68 24-55 (66)
100 2r2v_A GCN4 leucine zipper; co 29.4 56 0.0019 17.2 2.7 18 46-63 8-25 (34)
101 1r8e_A Multidrug-efflux transp 29.3 1.3E+02 0.0043 20.0 6.2 37 32-68 79-115 (278)
102 2p64_A F-BOX/WD repeat protein 29.2 17 0.00058 20.8 0.7 22 15-36 17-38 (52)
103 2yy0_A C-MYC-binding protein; 29.2 77 0.0026 17.5 4.4 27 45-71 25-51 (53)
104 1dip_A Delta-sleep-inducing pe 29.1 72 0.0024 19.6 3.6 23 45-67 21-43 (78)
105 3u59_A Tropomyosin beta chain; 28.6 98 0.0033 18.6 4.2 27 44-70 63-89 (101)
106 2zqm_A Prefoldin beta subunit 28.5 95 0.0032 18.3 6.6 26 44-69 82-107 (117)
107 3tul_A Cell invasion protein S 27.9 82 0.0028 21.6 4.1 25 46-70 69-93 (158)
108 1a93_B MAX protein, coiled coi 27.7 72 0.0025 16.7 4.3 27 44-70 5-31 (34)
109 2a26_A Calcyclin-binding prote 27.7 83 0.0028 17.4 3.5 21 48-68 29-49 (50)
110 1vp7_A Exodeoxyribonuclease VI 27.6 69 0.0024 20.1 3.5 19 41-59 67-85 (100)
111 1m1j_B Fibrinogen beta chain; 27.6 2.2E+02 0.0074 22.2 9.1 24 45-68 174-197 (464)
112 3ra3_A P1C; coiled coil domain 27.4 55 0.0019 16.4 2.4 15 44-58 12-26 (28)
113 1l8d_A DNA double-strand break 27.3 1E+02 0.0035 18.3 5.8 23 45-67 16-38 (112)
114 3mov_A Lamin-B1; LMNB1, B-type 27.0 14 0.00047 22.9 0.0 18 47-64 38-55 (95)
115 3rrk_A V-type ATPase 116 kDa s 26.9 72 0.0025 22.4 3.9 28 43-70 223-250 (357)
116 4ghu_A TNF receptor-associated 26.6 1E+02 0.0035 20.4 4.4 16 52-67 20-35 (198)
117 3c3g_A Alpha/beta peptide with 26.3 69 0.0024 16.7 2.7 18 47-64 8-25 (33)
118 3iyn_Q Protein IX, PIX, hexon- 25.5 1.3E+02 0.0045 20.1 4.7 30 41-70 93-122 (140)
119 2dgc_A Protein (GCN4); basic d 25.1 1E+02 0.0034 17.4 4.1 24 46-69 30-53 (63)
120 3trt_A Vimentin; cytoskeleton, 25.0 1E+02 0.0034 17.4 3.9 23 43-65 53-75 (77)
121 3hnw_A Uncharacterized protein 24.8 1.1E+02 0.0037 19.8 4.2 28 43-70 107-134 (138)
122 3okg_A Restriction endonucleas 24.7 1.1E+02 0.0038 20.9 4.4 15 31-45 369-383 (412)
123 4dnd_A Syntaxin-10, SYN10; str 24.5 1E+02 0.0035 19.7 3.9 24 44-67 72-95 (130)
124 3hpw_C Protein CCDA; alpha+bet 24.4 56 0.0019 16.9 2.2 22 18-39 11-32 (36)
125 2ke4_A CDC42-interacting prote 24.3 1.3E+02 0.0045 18.5 7.1 57 6-69 24-85 (98)
126 1tc3_C Protein (TC3 transposas 24.2 64 0.0022 15.0 2.3 37 5-41 10-46 (51)
127 4ikh_A Glutathione S-transfera 23.9 1.4E+02 0.0049 18.9 5.3 18 54-71 155-172 (244)
128 1ci6_A Transcription factor AT 23.5 1.1E+02 0.0036 17.2 4.8 25 46-70 23-47 (63)
129 1aa0_A Fibritin, gpwac E; bact 23.1 1.2E+02 0.0042 19.6 4.1 26 45-70 56-81 (113)
130 2pjw_V Vacuolar protein sortin 22.8 1.2E+02 0.0041 18.6 3.9 40 31-71 47-87 (91)
131 2bni_A General control protein 22.5 81 0.0028 16.6 2.6 21 49-69 4-24 (34)
132 2oxj_A Hybrid alpha/beta pepti 22.2 97 0.0033 16.3 3.0 20 49-68 4-23 (34)
133 3pjs_K KCSA, voltage-gated pot 22.0 56 0.0019 20.9 2.3 19 51-69 143-161 (166)
134 2lch_A Protein OR38; structura 21.5 1.3E+02 0.0046 17.7 4.3 27 34-60 5-31 (113)
135 3qao_A LMO0526 protein, MERR-l 21.5 1.3E+02 0.0045 20.7 4.3 41 29-69 62-106 (249)
136 1uuj_A Platelet-activating fac 21.2 50 0.0017 20.4 1.9 22 50-71 62-83 (88)
137 3sja_C Golgi to ER traffic pro 21.1 1.2E+02 0.0042 17.7 3.5 25 47-71 33-57 (65)
138 3m3m_A Glutathione S-transfera 21.0 1.5E+02 0.0053 18.1 5.5 21 51-71 128-148 (210)
139 1sy9_B Cyclic-nucleotide-gated 20.8 31 0.0011 17.1 0.7 10 13-22 16-25 (26)
140 2y9y_A Imitation switch protei 20.7 2.1E+02 0.0073 21.7 5.6 56 16-71 125-209 (374)
141 4hz2_A Glutathione S-transfera 20.7 1.7E+02 0.0058 18.5 5.5 20 52-71 148-167 (230)
142 2gkw_A TNF receptor-associated 20.2 1.4E+02 0.0049 19.3 4.1 22 46-67 14-35 (192)
143 3p8c_D Wiskott-aldrich syndrom 20.2 2.6E+02 0.0088 20.4 7.2 43 27-69 45-87 (279)
144 1ofc_X ISWI protein; nuclear p 20.2 1.3E+02 0.0043 22.2 4.1 56 16-71 112-195 (304)
145 1uo4_A General control protein 20.0 1.1E+02 0.0038 16.0 2.8 19 50-68 5-23 (34)
No 1
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=100.00 E-value=7.8e-40 Score=205.75 Aligned_cols=71 Identities=76% Similarity=1.176 Sum_probs=61.6
Q ss_pred ChHHhHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy648 1 MAAVHREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSHG 72 (72)
Q Consensus 1 ~~~~~~~~v~~~iq~DW~nRe~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAklss~ 72 (72)
||+ |+++||++||+||+|||||++|||||++|++|||+|+++||+||++||+||++||++|+||||||+||
T Consensus 1 ~~~-~~~~~q~~iq~DW~nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAklss~ 71 (75)
T 3p8c_E 1 MAG-QEDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTKG 71 (75)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCc-chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444 89999999999999999999999999999999999999999999999999999999999999999997
No 2
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=100.00 E-value=4.3e-36 Score=187.93 Aligned_cols=67 Identities=45% Similarity=0.761 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648 5 HREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 5 ~~~~v~~~iq~DW~nRe~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAklss 71 (72)
.+++++++||+||+|||||++||+||+||++|||+|+++||+||+.||+||++||++|+||||||+|
T Consensus 4 ~s~~~~~~iq~DW~nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 4 GSMSTKTNIQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999999999999987
No 3
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=94.95 E-value=0.041 Score=28.83 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy648 44 CRSRLAVLNEKLTTLERRIEYLE 66 (72)
Q Consensus 44 c~~kLa~ln~KL~~LE~~L~~LE 66 (72)
-+.|-+.|+.|||.||.+|+-||
T Consensus 6 lekkcaalesklqalekkleale 28 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999887
No 4
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=93.70 E-value=0.22 Score=28.33 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 37 LNSFDMSCRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 37 LN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
|-.|-.+..++|..|++||..+-++|+.||.++
T Consensus 14 lv~FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 14 IVKFQTKVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457888999999999999999999999999886
No 5
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=90.22 E-value=1.5 Score=26.81 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=32.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 20 REYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIE 63 (72)
Q Consensus 20 Re~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~ 63 (72)
+.++.|+|.|=.+.=.=|... ..||..++.+|.-||++|.
T Consensus 30 ~~~v~FLN~F~~sce~KLa~l----n~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 30 QKIVEFLNKFELSTRNKLSDL----NEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 467889999988877666544 5799999999999999885
No 6
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=88.90 E-value=0.73 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAklss 71 (72)
+..+..|+.++..||..|.-|++.|..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345888999999999999999998764
No 7
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=88.45 E-value=2.4 Score=26.02 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=23.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 21 EYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62 (72)
Q Consensus 21 e~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L 62 (72)
.++.|+|.|=.+.=+=|.. -..||..++.+|.-||+++
T Consensus 31 ~~v~FLN~F~~sce~KLa~----ln~KL~~LEr~L~iLEAkl 68 (75)
T 3p8c_E 31 KIADFLNSFDMSCRSRLAT----LNEKLTALERRIEYIEARV 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4566666666655544443 3467777777777777765
No 8
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=87.81 E-value=0.59 Score=26.29 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy648 50 VLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 50 ~ln~KL~~LE~~L~~LEAkls 70 (72)
++++|+.+||.+|+.|-.+++
T Consensus 2 dlEekv~~Le~~ld~LqTr~A 22 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFA 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999888775
No 9
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=87.30 E-value=1.3 Score=23.39 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 42 MSCRSRLAVLNEKLTTLERRIEYL 65 (72)
Q Consensus 42 ~sc~~kLa~ln~KL~~LE~~L~~L 65 (72)
.|.-.|+..++.+++.+|++|+.|
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~KLd~l 29 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHKLDLL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888876
No 10
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=86.85 E-value=1.1 Score=24.73 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAklss 71 (72)
++=..|++||..||.+|+-|.+.+++
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677777777777776666543
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=85.78 E-value=1 Score=27.21 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q psy648 47 RLAVLNEKLTTLERRIEYLEARKSHG 72 (72)
Q Consensus 47 kLa~ln~KL~~LE~~L~~LEAklss~ 72 (72)
.|..|..+|..||..+.-|+++++.|
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp 48 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADA 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 47889999999999999999998754
No 12
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=80.81 E-value=0.96 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEA 67 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEA 67 (72)
+.++..|+.+|..||..|.-|++
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777777777776665544
No 13
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=79.90 E-value=2.7 Score=22.03 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy648 45 RSRLAVLNEKLTTLERRIEYL 65 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~L 65 (72)
-+||..+++|++..+++|+.+
T Consensus 9 GaRLnRvE~k~t~MD~kL~~i 29 (31)
T 3hfe_A 9 GARLNRVEDKVTQLDQRLALI 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888888888754
No 14
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=76.89 E-value=5.6 Score=23.40 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 31 KKITDFLNSFDMSCRSRLAVLNEKLTTL 58 (72)
Q Consensus 31 ~~~~~FLN~F~~sc~~kLa~ln~KL~~L 58 (72)
.+...||+.|++-.+...-.+....+.+
T Consensus 5 ~KLasFLkDFD~ev~~~~~~~~~~~~~l 32 (62)
T 2qfa_B 5 RKLASFLKDFDREVEIRIKQIESDRQNL 32 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999988888666544
No 15
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=76.60 E-value=3.3 Score=23.60 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 42 MSCRSRLAVLNEKLTTLERRIEYL 65 (72)
Q Consensus 42 ~sc~~kLa~ln~KL~~LE~~L~~L 65 (72)
.+.=.||..++.+++.+|++|+.|
T Consensus 13 ~S~~~Rl~rVE~qV~~md~KLd~l 36 (49)
T 3bj4_A 13 NTIGARLNRVEDKVTQLDQRLALI 36 (49)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999998876
No 16
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=76.40 E-value=4.2 Score=23.17 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy648 33 ITDFLNSFDMSCRSRLAVLNE 53 (72)
Q Consensus 33 ~~~FLN~F~~sc~~kLa~ln~ 53 (72)
+++||+++..+....|..|+.
T Consensus 25 iadfL~~Yq~~vd~dL~~lE~ 45 (48)
T 1jy2_P 25 IADFLNNYQTSVDKDLRTLEG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccchhhHHHHHHH
Confidence 689999999888777766664
No 17
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=76.08 E-value=5 Score=29.76 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=32.2
Q ss_pred HHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 20 REYIEIITGSIKKITD--FLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 20 Re~i~~in~~I~~~~~--FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
|+.|+-+.-.|+.+++ +-++.. .-+.++..|++||+.||.++..+....
T Consensus 8 ~~~le~~~~~ik~~~~~~~~~~I~-~Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 8 QKEIENRYKEVKIRIESTVAGSLR-SMKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HHHHHHHTHHHHHHHHTTTHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777777753 222221 245577888888888888887776654
No 18
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.00 E-value=4.8 Score=22.33 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy648 51 LNEKLTTLERRIEYL 65 (72)
Q Consensus 51 ln~KL~~LE~~L~~L 65 (72)
|+.|...||.++..|
T Consensus 15 le~~naeLEervstL 29 (42)
T 2oqq_A 15 LENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 19
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=74.47 E-value=3 Score=25.56 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy648 50 VLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 50 ~ln~KL~~LE~~L~~LEAkls 70 (72)
++++|+.+||.+|+.|-.|++
T Consensus 4 dlEEKv~~LE~sld~LQTrfA 24 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFA 24 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888887765
No 20
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=73.65 E-value=11 Score=21.93 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
+.++..+++++..|++.+..|+..+
T Consensus 45 ~~~~~~l~~~i~~L~~~~~~L~~~~ 69 (99)
T 1q08_A 45 QERLQEVEARIAELQSMQRSLQRLN 69 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555443
No 21
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=71.08 E-value=7.6 Score=21.77 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
+-|+.|+..||.||.+|.-|-.++.
T Consensus 20 eelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888877764
No 22
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=70.60 E-value=6.6 Score=21.57 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy648 43 SCRSRLAVLNEKLTTLERRIE 63 (72)
Q Consensus 43 sc~~kLa~ln~KL~~LE~~L~ 63 (72)
.-+.|+..|+.||+.|.+++.
T Consensus 20 ~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666665555543
No 23
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=68.71 E-value=13 Score=20.78 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy648 45 RSRLAVLNEKLTTLERRI 62 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L 62 (72)
-+|+..+..||+.||+++
T Consensus 30 ~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 30 IGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHhHHHHHHhhc
Confidence 346777777777777665
No 24
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=68.31 E-value=6.2 Score=25.01 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 42 MSCRSRLAVLNEKLTTLERRIEYLEA 67 (72)
Q Consensus 42 ~sc~~kLa~ln~KL~~LE~~L~~LEA 67 (72)
.+|+.+|..|+.+|+.|+.+|.-|+.
T Consensus 19 ~~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 19 RAIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47888899999999999998888765
No 25
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=68.25 E-value=10 Score=20.18 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
+|||.+-+|...||+.=..||+++.
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888888888888888874
No 26
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=68.00 E-value=17 Score=22.87 Aligned_cols=48 Identities=25% Similarity=0.493 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 16 DWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLE 66 (72)
Q Consensus 16 DW~nRe~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LE 66 (72)
.|...+.-.|-..| ......|++|...|.+...=|.+||.-||. +|||
T Consensus 41 sWqDqkr~kFee~f-e~l~s~l~~f~e~a~e~vp~L~~~i~vle~--~~~~ 88 (94)
T 3fx7_A 41 SWRDARRDKFSEVL-DNLKSTFNEFDEAAQEQIAWLKERIRVLEE--DYLE 88 (94)
T ss_dssp SCCSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHC
T ss_pred hHhhHHHHHHHHHH-HHHHHHHHHHHHhhHHHhHHHHHHHHHhHH--HHHH
Confidence 47777776665544 567788999999999999999999999986 3454
No 27
>2raw_B Borealin; cell cycle, dasrab, chromosomal passender complex, IAP, BIR, apoptosis, cell division, centromere, chromosomal protein, binding, mitosis; 2.40A {Homo sapiens} PDB: 2rax_B
Probab=67.78 E-value=4 Score=24.54 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 32 KITDFLNSFDMSCRSRLAVLNEKLTTL 58 (72)
Q Consensus 32 ~~~~FLN~F~~sc~~kLa~ln~KL~~L 58 (72)
+...||+.||+-.+.+.-.+....+.+
T Consensus 2 KLasFLkDFD~eV~~~~~~lr~~~~~l 28 (68)
T 2raw_B 2 KLASFLKDFDREVEIRIKQIESDRQNL 28 (68)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999998888666544
No 28
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=67.33 E-value=8 Score=24.08 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648 43 SCRSRLAVLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 43 sc~~kLa~ln~KL~~LE~~L~~LEAklss 71 (72)
+=+.+++.|..++..|++.+.-++++++.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999999988754
No 29
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=66.06 E-value=19 Score=23.05 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
.++..+++++..|++.+..|+.++
T Consensus 102 ~~~~~l~~~i~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 102 QQEANVLQLIQDTEKNLKKIQQKI 125 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 30
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=63.34 E-value=11 Score=29.69 Aligned_cols=30 Identities=13% Similarity=0.229 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 33 ITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62 (72)
Q Consensus 33 ~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L 62 (72)
+.+||+++....+.-|..|+..|+.|+.+=
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~T 111 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTS 111 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhh
Confidence 679999999999999999999999998753
No 31
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=63.23 E-value=11 Score=29.04 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 33 ITDFLNSFDMSCRSRLAVLNEKLTTLERRIE 63 (72)
Q Consensus 33 ~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~ 63 (72)
+.+||++.....+..|..|+..|+.|+.+=.
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts 55 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTS 55 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhh
Confidence 6899999999999999999999999987643
No 32
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=63.17 E-value=24 Score=26.98 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=35.3
Q ss_pred HHHHHHHhhhHHH-----HHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 8 AIQKQIQQDWANR-----EYIEIITGSIKKITDFLNSFDMSC----------RSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 8 ~v~~~iq~DW~nR-----e~i~~in~~I~~~~~FLN~F~~sc----------~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
...+.||.-|..+ +.++.++...+++.+=+.+++... +..|..++.||+.|+.++..|++++
T Consensus 59 ~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 59 YLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3445566666654 345555777777777777766532 2334444555555555555555544
No 33
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=62.43 E-value=33 Score=24.48 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=29.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 20 REYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRI 62 (72)
Q Consensus 20 Re~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L 62 (72)
++||.|+|.-+.+-. +++|...-..|+..++..|+..|..+
T Consensus 104 ~~YI~fv~~~v~~el--~~~l~~~i~~r~~~l~~ql~~~~~~a 144 (248)
T 4e29_A 104 AQYIQQVDDKVNQEL--ERDLKDNIALGRKNLQDSLRTQEVVA 144 (248)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888776544 77787777777777777666655543
No 34
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=62.20 E-value=25 Score=22.43 Aligned_cols=24 Identities=8% Similarity=0.292 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
.++..+++++..|++.+..|+.++
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 35
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=60.31 E-value=14 Score=22.57 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEAR 68 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAk 68 (72)
+.||..|+.+++.|+++|.-|...
T Consensus 3 ~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457788888888888888777653
No 36
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=58.62 E-value=17 Score=21.79 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=28.2
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 29 SIKKITDFLNS----FDMSCRSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 29 ~I~~~~~FLN~----F~~sc~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
.+..|..+|.. ....-+.++..+++++..|++.+..|+.++.
T Consensus 61 ~l~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 106 (109)
T 1r8d_A 61 RLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLL 106 (109)
T ss_dssp CHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555532 2345577788888888888888888887764
No 37
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=58.60 E-value=33 Score=21.89 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=20.8
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 30 IKKITDFLNSF---DMSCRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 30 I~~~~~FLN~F---~~sc~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
+..|-++|... +.+|......|.+++..|++++.-|+..+
T Consensus 76 L~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~ 118 (148)
T 3gpv_A 76 IQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNL 118 (148)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 23455555666666666666666555443
No 38
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=56.93 E-value=25 Score=26.87 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 33 ITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEA 67 (72)
Q Consensus 33 ~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEA 67 (72)
+.+||+++...-...|..|+.-|+.|+.+-...+-
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~ 59 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEY 59 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999988766553
No 39
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=56.49 E-value=15 Score=25.42 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAklss 71 (72)
..||+.++.+|..|++.+.-|+++.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (310)
T 3n5l_A 281 AAKLKALDEELAKLEKRMAEREQKTAA 307 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 469999999999999999999988764
No 40
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=56.43 E-value=20 Score=21.14 Aligned_cols=24 Identities=4% Similarity=0.165 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
.++..|+.++..++.++.-++.++
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444443
No 41
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=56.36 E-value=27 Score=20.18 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 29 SIKKITDFLNSFDM----SCRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 29 ~I~~~~~FLN~F~~----sc~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
.+..|-+||...+. +|......|.+++..|+.++.-|+...
T Consensus 18 sL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~ 62 (99)
T 1q08_A 18 SLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQ 62 (99)
T ss_dssp CHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677765531 678888888889999988888887654
No 42
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=55.20 E-value=24 Score=19.45 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy648 48 LAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 48 La~ln~KL~~LE~~L~~LEAkls 70 (72)
+.+|+.|-..||.+..-||.+++
T Consensus 5 l~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 43
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=55.04 E-value=16 Score=22.00 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 43 SCRSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 43 sc~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
+|-.||-.++.+=+.||.+|.-||..+.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4677888888888888888888887764
No 44
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=55.04 E-value=13 Score=26.12 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAklss 71 (72)
..||+.++.+|..|++++.-|+++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (321)
T 3p7i_A 290 LAKTTAIQAQLDDLDRLNNALSAMSSV 316 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 469999999999999999999988753
No 45
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=54.74 E-value=35 Score=23.82 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 31 KKITDFLNSFDMSCRSRLAVLNEKLTTLER 60 (72)
Q Consensus 31 ~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~ 60 (72)
.+|+++|..|...|..-.+.++.+++.|+.
T Consensus 166 ~~Iv~~Ld~~~~~id~~~~~~~~~~~~l~~ 195 (464)
T 2y7c_A 166 KIIAEKLDTLLAQVDSTKARFEQIPQILKR 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888998888887776666666666654
No 46
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=54.73 E-value=21 Score=21.44 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 41 DMSCRSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 41 ~~sc~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
...-+.++..+++++..|+..+..|+..+.
T Consensus 76 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 105 (108)
T 2vz4_A 76 RAHLRRQHELLSARIGKLQKMAAAVEQAME 105 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888887764
No 47
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=54.65 E-value=28 Score=19.86 Aligned_cols=54 Identities=11% Similarity=0.230 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhHH-HHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy648 7 EAIQKQIQQDWAN-REYIEIITGSIKKITDFLNSFDMSC---RSRLAVLNEKLTTLER 60 (72)
Q Consensus 7 ~~v~~~iq~DW~n-Re~i~~in~~I~~~~~FLN~F~~sc---~~kLa~ln~KL~~LE~ 60 (72)
+-+-.++++-|.. ..+++..|..|.....-+-.|...+ +.++..|+.|+..+|+
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3344555666655 4455655556666666665553221 3344444444444443
No 48
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=53.83 E-value=28 Score=20.63 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 37 LNSFDMSCRSRLAVLNEKLTTLERRIEY 64 (72)
Q Consensus 37 LN~F~~sc~~kLa~ln~KL~~LE~~L~~ 64 (72)
|++=-.-+..|+..|+.||.++|.+++-
T Consensus 25 l~~AN~YTD~KF~qL~nKi~k~~kr~~a 52 (64)
T 3lt7_A 25 IRESNQYTDHKFHQLENRLDKLEKRLLK 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 4444456778999999999999988763
No 49
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=53.25 E-value=21 Score=22.63 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648 43 SCRSRLAVLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 43 sc~~kLa~ln~KL~~LE~~L~~LEAklss 71 (72)
.-+.|+.+|+.--+.|.+.++.||++|-.
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888899999998753
No 50
>3ezh_A Nitrate/nitrite sensor protein NARX; histidine kinase, sensor domain, four-helix bundle, nitrate sensor, selenomethionyl MAD; HET: MSE; 1.70A {Escherichia coli K12} PDB: 3ezi_A
Probab=52.65 E-value=21 Score=22.34 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=30.5
Q ss_pred HHHHhhhHH--HH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy648 11 KQIQQDWAN--RE----------YIEIITGSIKKITDFLNSFDMSCRSRLAVL 51 (72)
Q Consensus 11 ~~iq~DW~n--Re----------~i~~in~~I~~~~~FLN~F~~sc~~kLa~l 51 (72)
..|++.|.+ |. +..-+..||..+=.|...++...+.|+..+
T Consensus 63 ~~l~~~W~~~l~p~l~~~~~~~~~~~~v~~FV~~ID~lV~~LE~~sE~kl~~~ 115 (125)
T 3ezh_A 63 QGLQDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETA 115 (125)
T ss_dssp HHHHHHHHHTHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888963 11 667778888888888888888888887643
No 51
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=52.41 E-value=16 Score=21.88 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy648 45 RSRLAVLNEKLTTLERRIEYL 65 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~L 65 (72)
+.||..|+.||.-.|..|+-|
T Consensus 13 e~Ri~~LE~klAfqE~tIeeL 33 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTEL 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444443
No 52
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=51.31 E-value=42 Score=20.97 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 28 GSIKKITDFLNSFD----------MSCRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 28 ~~I~~~~~FLN~F~----------~sc~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
..+..|.++|...+ ..-+.++..+++++..|++.+..|+..+
T Consensus 58 ~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 58 FNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665432 2334555566666666666666665544
No 53
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=48.69 E-value=24 Score=19.93 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy648 46 SRLAVLNEKLTTLERRIEYL 65 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~L 65 (72)
..+..|+.+|..||..|.-|
T Consensus 45 ~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666544
No 54
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=48.44 E-value=29 Score=20.34 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 43 SCRSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 43 sc~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
..++-+..|+.|++.||..++-.|-++.
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777776666553
No 55
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=48.42 E-value=29 Score=22.16 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy648 43 SCRSRLAVLNEKLTTLERRIE 63 (72)
Q Consensus 43 sc~~kLa~ln~KL~~LE~~L~ 63 (72)
.++..+..+..+++.++..|.
T Consensus 116 ~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 116 KTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 56
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=47.00 E-value=20 Score=20.73 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy648 45 RSRLAVLNEKLTTLERRIEYLE 66 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LE 66 (72)
+..+..|+.+|..||..|.-+.
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3456677777777777776544
No 57
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=46.95 E-value=61 Score=21.57 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 42 MSCRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 42 ~sc~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
..-+.+++.+++++..|.+.+..|+..+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666555555555543
No 58
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=46.06 E-value=34 Score=20.94 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
+.-+..|+.|++.+|..|+-++.+|
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544443
No 59
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.01 E-value=82 Score=22.79 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=26.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 23 IEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 23 i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
.+.-||-++-+-+=|..=-+....|+..++-.+++|+.+|.-++|++
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 420 AATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555544444444444445566666666666666666666665
No 60
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=45.82 E-value=23 Score=19.08 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHH-------HHHHHHHhhc
Q psy648 49 AVLNEKLTTLER-------RIEYLEARKS 70 (72)
Q Consensus 49 a~ln~KL~~LE~-------~L~~LEAkls 70 (72)
+..++.||.||. .|.-+||++.
T Consensus 6 arveqelqaleargtdsnaelrameaklk 34 (40)
T 1abz_A 6 ARVEQELQALEARGTDSNAELRAMEAKLK 34 (40)
T ss_dssp HHHHHHHHHHHHTCSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 567778888886 4777787764
No 61
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=44.92 E-value=8.7 Score=19.94 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy648 45 RSRLAVLNEKLTTLERRIEYLE 66 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LE 66 (72)
+.|++.|++|--.-|.++.-||
T Consensus 6 eqkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 6 EQKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp HHHHHHHHHHTSSHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 62
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=43.80 E-value=15 Score=20.53 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy648 53 EKLTTLERRIEYLEARK 69 (72)
Q Consensus 53 ~KL~~LE~~L~~LEAkl 69 (72)
..++.||.+|..||+.|
T Consensus 58 ~~~~~L~~ri~~LE~~l 74 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTL 74 (81)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555544
No 63
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=43.57 E-value=36 Score=26.56 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 33 ITDFLNSFDMSCRSRLAVLNEKLTTLER 60 (72)
Q Consensus 33 ~~~FLN~F~~sc~~kLa~ln~KL~~LE~ 60 (72)
+.+||++...+-+..|..|+.+|+.|+.
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 3677777777777778888887777774
No 64
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.80 E-value=27 Score=18.49 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy648 48 LAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 48 La~ln~KL~~LE~~L~~LEAkl 69 (72)
+.+|++|...|=..-..||+.|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV 24 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEX 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH
Confidence 3444444444444444444444
No 65
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=41.75 E-value=68 Score=20.59 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
+.++..+++++..|+..+..|+..+.
T Consensus 96 ~~~~~~l~~qi~~L~~~~~~L~~~~~ 121 (154)
T 2zhg_A 96 SQWREELDRRIHTLVALRDELDGCIG 121 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777777777777776654
No 66
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=41.01 E-value=29 Score=22.12 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy648 55 LTTLERRIEYLEARKSH 71 (72)
Q Consensus 55 L~~LE~~L~~LEAklss 71 (72)
+...+++|++|..++.+
T Consensus 38 ~~D~~KRL~~LfdkLn~ 54 (118)
T 2yru_A 38 CDDISRRLALLREQWAG 54 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 55666666666666554
No 67
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=40.89 E-value=34 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 44 CRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 44 c~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
|...|+.+++++.+|+..++-+++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666666666665444
No 68
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=40.73 E-value=66 Score=20.21 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 10 QKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIE 63 (72)
Q Consensus 10 ~~~iq~DW~nRe~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~ 63 (72)
-+.+-+|=..|-++.-|-+=|.-+-+.||+|+ .|-.+=.+++..|-.|+.+++
T Consensus 26 Lr~~gqdP~lk~~L~Kig~Ei~~l~eLLn~~E-~eV~~Qe~~~~sLKEL~~s~e 78 (91)
T 4aj5_A 26 LRNCGQEPTLKTVLNKIGDEIIVINELLNKLE-LEIQYQEQTNNSLKELCESLE 78 (91)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccChhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888888899999999999999 688888888888888887765
No 69
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=40.62 E-value=44 Score=20.96 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 44 CRSRLAVLNEKLTTLERRIEYLEA 67 (72)
Q Consensus 44 c~~kLa~ln~KL~~LE~~L~~LEA 67 (72)
++.+|..|+.+|+.|+.+|.-|+.
T Consensus 29 ~~~~l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 29 LRQQVEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455588888888888888887765
No 70
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=40.17 E-value=44 Score=20.86 Aligned_cols=32 Identities=6% Similarity=-0.103 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 32 KITDFLNSFDMSCRSRLAVLNEKLTTLERRIE 63 (72)
Q Consensus 32 ~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~ 63 (72)
...+.|..=-..-+.+++.|...+..|+..+.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T 1q06_A 79 DVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777777777777766554
No 71
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=40.05 E-value=31 Score=19.43 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy648 42 MSCRSRLAVLNEKLTTL 58 (72)
Q Consensus 42 ~sc~~kLa~ln~KL~~L 58 (72)
.-+..||+.++.+|+.|
T Consensus 28 qlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 28 KLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666555544
No 72
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=39.81 E-value=36 Score=25.15 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
++.|..++.||+.|+.++..||.++.
T Consensus 24 ~~~l~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 24 QEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777778888877777777654
No 73
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=39.65 E-value=99 Score=21.88 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 20 REYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLE 59 (72)
Q Consensus 20 Re~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE 59 (72)
++||.|+|.-+.+-. .+++...-..|+..+.++++..+
T Consensus 138 ~~YI~fv~~~~~~~l--~~~l~~~i~~r~~~l~~qi~~~~ 175 (280)
T 3b8m_A 138 SGYIDYISALVVKES--IENVRNKLEIKTQFEKEKLAQDR 175 (280)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888887766544 34554444456655555554444
No 74
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=39.45 E-value=30 Score=18.49 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy648 46 SRLAVLNEKLTTLERRIEYLE 66 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LE 66 (72)
.|...|-.+...||..+.-|-
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 344444444444444444443
No 75
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=39.02 E-value=47 Score=18.40 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy648 51 LNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 51 ln~KL~~LE~~L~~LEAkls 70 (72)
.+...++||..++-||.++.
T Consensus 10 AERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888887764
No 76
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=38.90 E-value=33 Score=21.90 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Q psy648 29 SIKKITDFLNSFDMSCRS-------RLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 29 ~I~~~~~FLN~F~~sc~~-------kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
.+..|..+|..-+.++.. +.+.+.+++..|++.+..|+..+
T Consensus 63 sl~~I~~~l~~~~~~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i 110 (146)
T 3hh0_A 63 SLGEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMT 110 (146)
T ss_dssp CHHHHHHHHTSSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566544333443 34455555555555555555544
No 77
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=38.18 E-value=44 Score=20.82 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy648 47 RLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 47 kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
++..|+.+++.|+.+|+-+...+
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777666665544
No 78
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=38.13 E-value=49 Score=18.60 Aligned_cols=25 Identities=4% Similarity=0.048 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
.|+..|+.+++.|-.+++-|...+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~ 28 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDAN 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777776666665543
No 79
>1jek_A ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=37.87 E-value=26 Score=19.13 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy648 54 KLTTLERRIEYLEARKS 70 (72)
Q Consensus 54 KL~~LE~~L~~LEAkls 70 (72)
-+|.+-..+.||||+++
T Consensus 21 mvqhvakgirilearva 37 (42)
T 1jek_A 21 MVQHIAKGIRILEARVA 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 34566677888888875
No 80
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=37.06 E-value=1.5e+02 Score=23.25 Aligned_cols=47 Identities=19% Similarity=0.096 Sum_probs=33.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 21 EYIEIITGSIKKITDFLNSFDMS---CRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 21 e~i~~in~~I~~~~~FLN~F~~s---c~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
.+++-+-.+|+.++ .+.|.++ -++-+..++.|+++|+..+..++.+-
T Consensus 144 ~mle~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c 193 (461)
T 3ghg_B 144 SELEKHQLYIDETV--NSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYC 193 (461)
T ss_dssp HHHHHHHTHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhh--hccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 68888888888666 3445444 34567777888888888888887764
No 81
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=36.55 E-value=1.1e+02 Score=21.38 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=25.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 20 REYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLE 59 (72)
Q Consensus 20 Re~i~~in~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE 59 (72)
++||.|+|.-+.+-. .+++...-..|+..+.+++...+
T Consensus 123 ~~YI~~v~~~~~~~l--~~~l~~~~~~r~~~l~~qi~~~~ 160 (265)
T 3b8o_A 123 RQYVAFASQRAASHL--NDELKGAWAARTIQMKAQVKRQE 160 (265)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888777655 45555555566666666666655
No 82
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=36.25 E-value=69 Score=19.36 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648 42 MSCRSRLAVLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 42 ~sc~~kLa~ln~KL~~LE~~L~~LEAklss 71 (72)
..|+..+-.|++++++=-=++.||..-|++
T Consensus 36 e~Ck~sIrrLE~evn~ErFrmIYLQTlLAk 65 (72)
T 1k1f_A 36 ERAKASIRRLEQEVNQERFRMIYLQTLLAK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 369999999999999888889999887765
No 83
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=36.22 E-value=54 Score=19.90 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
+|||.+=+|...||.+=..||+++
T Consensus 16 dRlAsyIdKVR~LEqqN~~Le~~i 39 (93)
T 3s4r_A 16 DRFANLIDKVRFLEQQNKILLAEL 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777665
No 84
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=35.90 E-value=35 Score=21.50 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=19.2
Q ss_pred HHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy648 27 TGSIKKITDFLNSFDM-SCRSRLAVLNEKLTTLERR 61 (72)
Q Consensus 27 n~~I~~~~~FLN~F~~-sc~~kLa~ln~KL~~LE~~ 61 (72)
..++...+.||..|+. +|..-|..|..+|+....+
T Consensus 71 qk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~ 106 (111)
T 2l3l_A 71 QKLINDSVFFLAAYDLRQGQEALARLQAALAERRRG 106 (111)
T ss_dssp HHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556664 5666666666666555444
No 85
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.47 E-value=24 Score=18.86 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy648 49 AVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 49 a~ln~KL~~LE~~L~~LEAkl 69 (72)
.+|+.|...|...-..||..|
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV 24 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHH
Confidence 345555555554444555444
No 86
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=35.19 E-value=66 Score=18.55 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAklss 71 (72)
.....|...+..|.+....|++++.+
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777777777777654
No 87
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=34.56 E-value=66 Score=19.55 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy648 50 VLNEKLTTLERRIEYLE 66 (72)
Q Consensus 50 ~ln~KL~~LE~~L~~LE 66 (72)
++.-+|..+|.++.-||
T Consensus 26 t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 26 TAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhHHHH
Confidence 33333333333333333
No 88
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=33.95 E-value=92 Score=22.77 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=27.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Q psy648 21 EYIEIITGSIKKITDFLNSFDMSCRSRLA-------VLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 21 e~i~~in~~I~~~~~FLN~F~~sc~~kLa-------~ln~KL~~LE~~L~~LEAkl 69 (72)
|+-.+.|.-+..+++-|+..+....+=+. .+.+|+..|-.++.-|+++|
T Consensus 25 eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v 80 (279)
T 3p8c_D 25 ELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSV 80 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566677777777777766655554333 33344445555555555554
No 89
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=33.88 E-value=44 Score=24.00 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
.||..|++.|...|...-.-||+|+
T Consensus 131 ~kl~~LeqELvraEae~lvaEAqL~ 155 (234)
T 3plt_A 131 TKIPVLEQELVRAEAESLVAEAQLS 155 (234)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5778888888888888888888875
No 90
>1m48_A Interleukin-2; four-helix bundle, small molecule complex, cytokine; HET: FRG; 1.95A {Homo sapiens} SCOP: a.26.1.2 PDB: 1m47_A* 1m49_A* 1m4c_A 1pw6_A* 1z92_A 2b5i_A* 1py2_A* 3ink_C 2erj_D 1qvn_A* 1irl_A 1m4b_A* 1m4a_A* 1nbp_A* 3qb1_A 3qaz_A
Probab=33.65 E-value=21 Score=23.95 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhHH------------------HHHHHHHHHHHHHHHHHHH
Q psy648 19 NREYIEIITGSIK------------------KITDFLNSFDMSCRSRLAV 50 (72)
Q Consensus 19 nRe~i~~in~~I~------------------~~~~FLN~F~~sc~~kLa~ 50 (72)
.+++|.-||-.+. .+++|||++-.-|.+=+++
T Consensus 82 ~~~~isNInvtv~~LkGset~f~Ceyddet~tivEFln~WItFCQsi~st 131 (133)
T 1m48_A 82 PRDLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFCQSIIST 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCCCCBCSSCBCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhheeeeeccCCCccceeeccCchhhHHHHHHHHHHHHHHHHhc
Confidence 6788888888776 4799999999999876654
No 91
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=33.15 E-value=28 Score=21.21 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 44 CRSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 44 c~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
|-.||-.++.+=+.||.+|.-||..+.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 456777777777777777777776654
No 92
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=32.80 E-value=1.2e+02 Score=20.96 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 32 KITDFLNSFDMSCRSRLAVLNEKLTTLER 60 (72)
Q Consensus 32 ~~~~FLN~F~~sc~~kLa~ln~KL~~LE~ 60 (72)
+|+++|..|...|..-...++.+++.|+.
T Consensus 380 ~Iv~~l~~~~~~id~l~~~~~~~~~~l~~ 408 (464)
T 2y7c_A 380 EIVRRVEQLFAYADTIEKQVNNALARVNN 408 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777776666555555555555444
No 93
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=31.95 E-value=78 Score=20.40 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEAR 68 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAk 68 (72)
+.+++..+.+|..++.+|..||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~ 39 (192)
T 1ca9_A 16 ERSIGLKDLAMADLEQKVLEMEAS 39 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 467788888888888888888874
No 94
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=31.22 E-value=50 Score=17.29 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy648 46 SRLAVLNEKLTTLERRIE 63 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~ 63 (72)
.|...|-.+...||..+.
T Consensus 7 dKVEell~~~~~le~EV~ 24 (33)
T 2wq1_A 7 DKIEENTSKIYHNTNEIA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 344444444444444443
No 95
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=31.19 E-value=76 Score=20.01 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 44 CRSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 44 c~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
-..|+..|.+.+..+|+.+.-|..++.
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777776666543
No 96
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=31.04 E-value=47 Score=20.42 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy648 45 RSRLAVLNEKLTTLERRIE 63 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~ 63 (72)
..|+..|+.||+++++++.
T Consensus 15 ~~~~~~l~~~i~~~~~~~~ 33 (105)
T 2lme_A 15 AHKFRQLDNRLDKLDTRVD 33 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777654
No 97
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=31.02 E-value=58 Score=23.98 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
+..+..++.||+.||.++..+....
T Consensus 36 q~~le~l~~KIq~Le~~v~~~~~~~ 60 (328)
T 1fzc_B 36 RSILENLRSKIQKLESDVSAQMEYC 60 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4456677888888888887666543
No 98
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=30.18 E-value=97 Score=18.99 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 35 DFLNSFDMSCRSRLAVLNEKLTTLERRIEY 64 (72)
Q Consensus 35 ~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~ 64 (72)
+|..++-..-+.+|..+...|..+|+-|..
T Consensus 8 ~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s 37 (93)
T 3t98_B 8 DYFRVLVQQFEVQLQQYRQQIEELENHLAT 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455555555555555555443
No 99
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=29.68 E-value=75 Score=17.54 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy648 37 LNSFDMSCRSRLAVLNEKLTTLERRIEYLEAR 68 (72)
Q Consensus 37 LN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAk 68 (72)
+|+.-..|..+++.++++...-...++-||.+
T Consensus 24 l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k 55 (66)
T 3m0a_A 24 LNREVERVAMTAEACSRQHRLDQDKIEALSSK 55 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHH
Confidence 55555555555555555544444444444444
No 100
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=29.40 E-value=56 Score=17.21 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy648 46 SRLAVLNEKLTTLERRIE 63 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~ 63 (72)
.|+..|=.+...||..+.
T Consensus 8 dKvEel~~~~~~l~nEv~ 25 (34)
T 2r2v_A 8 DKLEEVASKLYHNANELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 344444444444444443
No 101
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=29.32 E-value=1.3e+02 Score=19.99 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy648 32 KITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEAR 68 (72)
Q Consensus 32 ~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAk 68 (72)
...+.|..=...-+.+++.|...+..|+..+..++..
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 79 ELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666667777777777777777777766644
No 102
>2p64_A F-BOX/WD repeat protein 1A; right handed super-helical bundle, ligase; 2.50A {Homo sapiens}
Probab=29.23 E-value=17 Score=20.76 Aligned_cols=22 Identities=14% Similarity=0.605 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHH
Q psy648 15 QDWANREYIEIITGSIKKITDF 36 (72)
Q Consensus 15 ~DW~nRe~i~~in~~I~~~~~F 36 (72)
..|.+.|.+.||=+.+.+++.|
T Consensus 17 ~~Wse~eQvdfv~~L~~rm~hy 38 (52)
T 2p64_A 17 EQWSESDQVEFVEHLISQMCHY 38 (52)
T ss_dssp TTSCHHHHHHHHHHHHHTSCHH
T ss_pred HhccchHHHHHHHHHHHHhhHH
Confidence 5699999999988887776654
No 103
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.22 E-value=77 Score=17.52 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAklss 71 (72)
+..++.|..|+..|..++.-|.+++.+
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677777888888888888877754
No 104
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=29.08 E-value=72 Score=19.58 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEA 67 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEA 67 (72)
++++..|.+|...||..=.+|-.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999988777654
No 105
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=28.61 E-value=98 Score=18.63 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 44 CRSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 44 c~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
...+|...+.+|..-|....--|+.|+
T Consensus 63 ~~e~l~~a~~kLe~~ek~~~~AE~eva 89 (101)
T 3u59_A 63 YSESVKEAQEKLEQAEKKATDAEAEVA 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555443
No 106
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.51 E-value=95 Score=18.31 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 44 CRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 44 c~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
++..+..|+.++..++.++.-++.++
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554443
No 107
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.87 E-value=82 Score=21.59 Aligned_cols=25 Identities=0% Similarity=0.082 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
.++.+...+++.+|.+++-+++||+
T Consensus 69 ~n~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 69 KKTDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666666666666665
No 108
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.73 E-value=72 Score=16.70 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 44 CRSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 44 c~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
.+.|-.....-++.|+++-.+||.++.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 467888888889999999999998874
No 109
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=27.67 E-value=83 Score=17.37 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy648 48 LAVLNEKLTTLERRIEYLEAR 68 (72)
Q Consensus 48 La~ln~KL~~LE~~L~~LEAk 68 (72)
..-|...+..+|+.+..+|++
T Consensus 29 k~~L~~ei~~lE~ei~~~~~~ 49 (50)
T 2a26_A 29 RDALTAEKSKIETEIKNKMQQ 49 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 456788899999999888765
No 110
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=27.63 E-value=69 Score=20.13 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy648 41 DMSCRSRLAVLNEKLTTLE 59 (72)
Q Consensus 41 ~~sc~~kLa~ln~KL~~LE 59 (72)
...|+.+|...+.|++.|+
T Consensus 67 ~k~C~~~L~~AE~kV~~L~ 85 (100)
T 1vp7_A 67 ARVCQDRLAQAEQQVKVLE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4579999998888888884
No 111
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.59 E-value=2.2e+02 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEAR 68 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAk 68 (72)
+..+..++.||+.||..+..+..+
T Consensus 174 ~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 174 RAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888887766554
No 112
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.40 E-value=55 Score=16.35 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy648 44 CRSRLAVLNEKLTTL 58 (72)
Q Consensus 44 c~~kLa~ln~KL~~L 58 (72)
-+.|++.|.+|+-+|
T Consensus 12 leqkiaalkqkiasl 26 (28)
T 3ra3_A 12 LEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 466777777766554
No 113
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.31 E-value=1e+02 Score=18.25 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEA 67 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEA 67 (72)
+.+|..|......++..+..++.
T Consensus 16 ~~~l~~L~~~~~~l~~~i~~l~~ 38 (112)
T 1l8d_A 16 EEERNEITQRIGELKNKIGDLKT 38 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 114
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=27.01 E-value=14 Score=22.90 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy648 47 RLAVLNEKLTTLERRIEY 64 (72)
Q Consensus 47 kLa~ln~KL~~LE~~L~~ 64 (72)
.+..++..|..||..|.-
T Consensus 38 e~~~~q~~i~~lE~eL~~ 55 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAE 55 (95)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 115
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=26.90 E-value=72 Score=22.40 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 43 SCRSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 43 sc~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
.-...+..++.+++.++..+.-+++++.
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~ 250 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVA 250 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777666653
No 116
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=26.56 E-value=1e+02 Score=20.37 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy648 52 NEKLTTLERRIEYLEA 67 (72)
Q Consensus 52 n~KL~~LE~~L~~LEA 67 (72)
..+|..||.++..||.
T Consensus 20 ~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 20 DIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3455555555555554
No 117
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.29 E-value=69 Score=16.74 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy648 47 RLAVLNEKLTTLERRIEY 64 (72)
Q Consensus 47 kLa~ln~KL~~LE~~L~~ 64 (72)
|...|=.+=+.||..+.-
T Consensus 8 KvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 8 KLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 333333333444444433
No 118
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=25.47 E-value=1.3e+02 Score=20.14 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 41 DMSCRSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 41 ~~sc~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
+..-++||..+-.+|..|-++|+.|-+||.
T Consensus 93 s~~red~L~~~laqLe~ls~qL~~ls~~v~ 122 (140)
T 3iyn_Q 93 SSARDDKLTALLAQLDSLTRELNVVSQQLL 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777776666653
No 119
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.06 E-value=1e+02 Score=17.43 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
.++..|+.++..|+..-..|++.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666554
No 120
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.96 E-value=1e+02 Score=17.38 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy648 43 SCRSRLAVLNEKLTTLERRIEYL 65 (72)
Q Consensus 43 sc~~kLa~ln~KL~~LE~~L~~L 65 (72)
+++.-+..|+..++.|+..|+-|
T Consensus 53 ~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 53 QAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677888888888888777644
No 121
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.83 E-value=1.1e+02 Score=19.80 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 43 SCRSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 43 sc~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
.-+..+..+.++++.|+.++.-||+.+.
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777654
No 122
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=24.67 E-value=1.1e+02 Score=20.91 Aligned_cols=15 Identities=13% Similarity=0.470 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy648 31 KKITDFLNSFDMSCR 45 (72)
Q Consensus 31 ~~~~~FLN~F~~sc~ 45 (72)
.+|++||..++..+.
T Consensus 369 ~~I~~~l~~~d~~i~ 383 (412)
T 3okg_A 369 RRIVAYLDQIQQQVA 383 (412)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777765554
No 123
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=24.50 E-value=1e+02 Score=19.75 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 44 CRSRLAVLNEKLTTLERRIEYLEA 67 (72)
Q Consensus 44 c~~kLa~ln~KL~~LE~~L~~LEA 67 (72)
-++-|..++.-|..|++++.+.|+
T Consensus 72 L~~~l~sie~dLeDLe~sI~ivE~ 95 (130)
T 4dnd_A 72 LRNGLRSIEWDLEDLEETIGIVEA 95 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677788888888888888874
No 124
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=24.40 E-value=56 Score=16.94 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q psy648 18 ANREYIEIITGSIKKITDFLNS 39 (72)
Q Consensus 18 ~nRe~i~~in~~I~~~~~FLN~ 39 (72)
+||+-|+-.|.+|-.-=-|+..
T Consensus 11 EN~~ai~~~N~~ve~~Gl~~d~ 32 (36)
T 3hpw_C 11 ENQEGMAEVARFIEMNGSFADE 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHH
Confidence 6999999999998765555443
No 125
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.30 E-value=1.3e+02 Score=18.49 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 6 REAIQKQIQQDWANREYIEIITGSIKKITDFLN---SF--DMSCRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 6 ~~~v~~~iq~DW~nRe~i~~in~~I~~~~~FLN---~F--~~sc~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
...+++.|++.=..|+= +.++.++.- .| ..+|+.+|+.+..+|..|...+--++..|
T Consensus 24 i~el~~ei~ke~~~reg-------l~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L 85 (98)
T 2ke4_A 24 LEERSRELQKEVDQREA-------LKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWL 85 (98)
T ss_dssp HHHHHHHHHHHHHHHTH-------HHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777764 444544432 45 67788888888888888887776665544
No 126
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.15 E-value=64 Score=14.97 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy648 5 HREAIQKQIQQDWANREYIEIITGSIKKITDFLNSFD 41 (72)
Q Consensus 5 ~~~~v~~~iq~DW~nRe~i~~in~~I~~~~~FLN~F~ 41 (72)
....+.....+.+..+++...++.....+-.++.+|.
T Consensus 10 ~~~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 10 ERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 3445555566777788888887777666666666553
No 127
>4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens}
Probab=23.94 E-value=1.4e+02 Score=18.86 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy648 54 KLTTLERRIEYLEARKSH 71 (72)
Q Consensus 54 KL~~LE~~L~~LEAklss 71 (72)
-...+.+.|..||..|+.
T Consensus 155 ~~~~~~~~l~~le~~L~~ 172 (244)
T 4ikh_A 155 YVNEAKRLLGVLDKHLGG 172 (244)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 345667778888887764
No 128
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.50 E-value=1.1e+02 Score=17.19 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 46 SRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
.+...|..+...|+..-..|+++++
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666554
No 129
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.08 E-value=1.2e+02 Score=19.63 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy648 45 RSRLAVLNEKLTTLERRIEYLEARKS 70 (72)
Q Consensus 45 ~~kLa~ln~KL~~LE~~L~~LEAkls 70 (72)
+.-++.+..+++.+|..+.-||+++.
T Consensus 56 et~i~~~t~~v~t~k~~i~~~e~~vq 81 (113)
T 1aa0_A 56 ETNIASVTQEVNTAKGNISSLQGDVQ 81 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhheeecccccchhhhhhhhH
Confidence 45566677777777777777776654
No 130
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=22.80 E-value=1.2e+02 Score=18.60 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Q psy648 31 KKITDFLNSFDMSCRSRLAVLNEKLTTLERRI-EYLEARKSH 71 (72)
Q Consensus 31 ~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L-~~LEAklss 71 (72)
-|+..=|..-. +=.+-|..+|+||....+-- .+||+++++
T Consensus 47 PKL~r~l~~~~-~K~~~L~~mn~Kls~a~rlYD~lLE~~l~~ 87 (91)
T 2pjw_V 47 ARLNYALNDKA-QKYNTLIEMNGKISEIMNIYDRLLEQQLQS 87 (91)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444443 33346888999998887654 367777653
No 131
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.51 E-value=81 Score=16.57 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy648 49 AVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 49 a~ln~KL~~LE~~L~~LEAkl 69 (72)
.+|++|+..|=..=..||+.|
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV 24 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHH
Confidence 344444444433333444433
No 132
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=22.25 E-value=97 Score=16.26 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy648 49 AVLNEKLTTLERRIEYLEAR 68 (72)
Q Consensus 49 a~ln~KL~~LE~~L~~LEAk 68 (72)
.+|++|...|=..=..||+.
T Consensus 4 nQLE~kVEeLl~~n~~Le~e 23 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 34444443333333333333
No 133
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=21.96 E-value=56 Score=20.95 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy648 51 LNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 51 ln~KL~~LE~~L~~LEAkl 69 (72)
+.+++..|..+++.||.++
T Consensus 143 l~~~i~~L~~~l~~le~~~ 161 (166)
T 3pjs_K 143 YTRTTRALHERFDRLERML 161 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 134
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=21.54 E-value=1.3e+02 Score=17.65 Aligned_cols=27 Identities=7% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy648 34 TDFLNSFDMSCRSRLAVLNEKLTTLER 60 (72)
Q Consensus 34 ~~FLN~F~~sc~~kLa~ln~KL~~LE~ 60 (72)
-+++..|-.-+++.|..++.-|..+|.
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~ 31 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEK 31 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777888888888888877777764
No 135
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=21.45 E-value=1.3e+02 Score=20.69 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=23.9
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 29 SIKKITDFLNS----FDMSCRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 29 ~I~~~~~FLN~----F~~sc~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
.+..|-++|.. .....+.++..|.+++..|++.+..|+..+
T Consensus 62 sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i 106 (249)
T 3qao_A 62 PLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTI 106 (249)
T ss_dssp CHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555542 123455666677777777777777766654
No 136
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=21.24 E-value=50 Score=20.41 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q psy648 50 VLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 50 ~ln~KL~~LE~~L~~LEAklss 71 (72)
+|..|+-.||.++.-|+..+.+
T Consensus 62 RLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 62 RLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666655544
No 137
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=21.15 E-value=1.2e+02 Score=17.72 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q psy648 47 RLAVLNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 47 kLa~ln~KL~~LE~~L~~LEAklss 71 (72)
|-+.|+.|+++|-..|+-+=..+.|
T Consensus 33 KWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 33 KWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7788899999998888887776655
No 138
>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens}
Probab=21.02 E-value=1.5e+02 Score=18.11 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q psy648 51 LNEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 51 ln~KL~~LE~~L~~LEAklss 71 (72)
++.....+.+.|..||..|+.
T Consensus 128 ~~~~~~~~~~~l~~le~~L~~ 148 (210)
T 3m3m_A 128 YLKLHKRGYKALDVMEKQLSR 148 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 455566778888888888764
No 139
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=20.82 E-value=31 Score=17.07 Aligned_cols=10 Identities=30% Similarity=1.052 Sum_probs=7.8
Q ss_pred HHhhhHHHHH
Q psy648 13 IQQDWANREY 22 (72)
Q Consensus 13 iq~DW~nRe~ 22 (72)
+-.||++|.|
T Consensus 16 v~r~wa~~nf 25 (26)
T 1sy9_B 16 VLREWAYRNF 25 (26)
T ss_pred HHHHHHHhcc
Confidence 5679999865
No 140
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=20.73 E-value=2.1e+02 Score=21.69 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHhHH-------HHHH-------------HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q psy648 16 DWANREYIEIITGSIK-------KITD-------------FLNSFDMSC---------RSRLAVLNEKLTTLERRIEYLE 66 (72)
Q Consensus 16 DW~nRe~i~~in~~I~-------~~~~-------------FLN~F~~sc---------~~kLa~ln~KL~~LE~~L~~LE 66 (72)
||.-|+|-.||+...+ .|+. +.+-|=..| -.++..-++|+++++.....|.
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~ 204 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEALR 204 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999998765 2322 333333333 2467778888888888888888
Q ss_pred Hhhcc
Q psy648 67 ARKSH 71 (72)
Q Consensus 67 Aklss 71 (72)
.++++
T Consensus 205 ~Ki~~ 209 (374)
T 2y9y_A 205 RKLSE 209 (374)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 88764
No 141
>4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus}
Probab=20.66 E-value=1.7e+02 Score=18.49 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy648 52 NEKLTTLERRIEYLEARKSH 71 (72)
Q Consensus 52 n~KL~~LE~~L~~LEAklss 71 (72)
+.-...+++.|..||..|+.
T Consensus 148 ~~~~~~l~~~l~~le~~L~~ 167 (230)
T 4hz2_A 148 ADCATRGAAALDVMEQHLAG 167 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 34456778888888888764
No 142
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=20.23 E-value=1.4e+02 Score=19.28 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy648 46 SRLAVLNEKLTTLERRIEYLEA 67 (72)
Q Consensus 46 ~kLa~ln~KL~~LE~~L~~LEA 67 (72)
..++..+.+|..+|.++..||.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 14 QMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3455556666666766666665
No 143
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=20.23 E-value=2.6e+02 Score=20.37 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=29.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy648 27 TGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARK 69 (72)
Q Consensus 27 n~~I~~~~~FLN~F~~sc~~kLa~ln~KL~~LE~~L~~LEAkl 69 (72)
+.+--.|+.=|.+=....-.|...|.+|++.|+.++..|+.++
T Consensus 45 s~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~~ld~~~ 87 (279)
T 3p8c_D 45 SKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPKE 87 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 3333334433433334556899999999999999999887663
No 144
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=20.19 E-value=1.3e+02 Score=22.16 Aligned_cols=56 Identities=18% Similarity=0.320 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHhHHH-------H------------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q psy648 16 DWANREYIEIITGSIKK-------I------------TDFLNSFDMSCR---------SRLAVLNEKLTTLERRIEYLEA 67 (72)
Q Consensus 16 DW~nRe~i~~in~~I~~-------~------------~~FLN~F~~sc~---------~kLa~ln~KL~~LE~~L~~LEA 67 (72)
+|.-|+|-+||+...+. | -++..-|=..|. .++..-+.||.+++.....|..
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~~ 191 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQ 191 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999987652 2 233344444442 4667777777777777777777
Q ss_pred hhcc
Q psy648 68 RKSH 71 (72)
Q Consensus 68 klss 71 (72)
++++
T Consensus 192 Ki~~ 195 (304)
T 1ofc_X 192 KMSR 195 (304)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7653
No 145
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.00 E-value=1.1e+02 Score=16.03 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy648 50 VLNEKLTTLERRIEYLEAR 68 (72)
Q Consensus 50 ~ln~KL~~LE~~L~~LEAk 68 (72)
+|++|...|=..-.-||..
T Consensus 5 QLEdKVEeLl~~n~~Le~E 23 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 3444443333333334433
Done!