RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy648
         (72 letters)



>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia
           coli [TaxId: 562]}
          Length = 127

 Score = 24.7 bits (53), Expect = 0.94
 Identities = 8/42 (19%), Positives = 16/42 (38%)

Query: 30  IKKITDFLNSFDMSCRSRLAVLNEKLTTLERRIEYLEARKSH 71
             ++ +  N              EK+  +ER IE L++ +  
Sbjct: 63  SGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQ 104


>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
           {Cryptosporidium parvum [TaxId: 5807]}
          Length = 223

 Score = 24.4 bits (53), Expect = 1.2
 Identities = 7/62 (11%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 10  QKQIQQDWANREYIEIITGSIKKITDFLNSFDMSCRSRLAVLNEKL---TTLERRIEYLE 66
           +K  ++   N E+I++I    +   + +          + ++++ L   +    R   ++
Sbjct: 45  EKLRKEKSLNNEFIQVIEDIKRDFEESILLE---SEDVIRIIDDNLLMYSEEGARAFCIK 101

Query: 67  AR 68
            +
Sbjct: 102 LK 103


>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
           {Bacillus anthracis [TaxId: 1392]}
          Length = 509

 Score = 24.5 bits (53), Expect = 1.3
 Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 4/33 (12%)

Query: 6   REAIQKQIQQD----WANREYIEIITGSIKKIT 34
              I+K I       + NR Y +I  G+   I 
Sbjct: 322 GRFIEKNITGKDYLYYFNRSYNKIAPGNKAYIE 354


>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 157

 Score = 22.3 bits (47), Expect = 7.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 23 IEIITGSIKKITDFLNSFDMSCRSRLAVLNEKLTTLERR 61
          ++  T    K ++ L  FD S    L ++N++L  LER 
Sbjct: 43 VKNFTEIASKFSERLQDFDKSNPIVLRMMNDQLMFLERA 81


>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase
          II subunit RBP7 (RpoE) {Archaeon Methanococcus
          jannaschii [TaxId: 2190]}
          Length = 106

 Score = 21.9 bits (46), Expect = 9.2
 Identities = 4/13 (30%), Positives = 8/13 (61%)

Query: 24 EIITGSIKKITDF 36
          E+I G +  + +F
Sbjct: 5  ELIEGEVVDVVEF 17


>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722
          {Novosphingobium aromaticivorans [TaxId: 48935]}
          Length = 153

 Score = 22.0 bits (46), Expect = 9.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 53 EKLTTLERRIEYLEAR 68
          + LT L  R+  LE R
Sbjct: 2  DDLTNLAARLRLLEDR 17


>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII,
           N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
          Length = 103

 Score = 21.9 bits (46), Expect = 9.3
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 53  EKLTTLERRIEYLEARKSH 71
           + L  LE  + YL++  + 
Sbjct: 83  DYLEWLENLLTYLKSDYTQ 101


>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia
          coli [TaxId: 562]}
          Length = 94

 Score = 21.8 bits (46), Expect = 9.8
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 29 SIKKITDFLNSFD----MSCRSRLAVLNEKLTTLERRIEYLEARKSH 71
          S++ I + L+        +C+    ++ E+L  +E RI  L++ +  
Sbjct: 18 SLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRS 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 274,514
Number of extensions: 10284
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 14
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)