Query psy6481
Match_columns 94
No_of_seqs 40 out of 42
Neff 2.8
Searched_HMMs 46136
Date Fri Aug 16 19:13:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00041 fn3: Fibronectin type 92.5 0.44 9.6E-06 27.8 4.7 50 2-59 28-78 (85)
2 COG3648 Uricase (urate oxidase 68.0 1.6 3.5E-05 36.0 -0.1 40 53-92 91-138 (299)
3 PF07495 Y_Y_Y: Y_Y_Y domain; 67.0 15 0.00032 21.5 3.9 43 9-60 9-51 (66)
4 COG2107 Predicted periplasmic 45.5 5.2 0.00011 32.7 -0.7 31 6-43 149-180 (272)
5 PF01404 Ephrin_lbd: Ephrin re 37.9 56 0.0012 24.7 3.8 32 5-36 90-127 (178)
6 PF08636 Pkr1: ER protein Pkr1 30.1 39 0.00085 22.7 1.7 18 63-80 5-22 (75)
7 PLN02232 ubiquinone biosynthes 29.7 41 0.0009 23.4 1.9 47 27-77 31-77 (160)
8 KOG1233|consensus 28.5 98 0.0021 27.8 4.3 45 37-81 516-572 (613)
9 smart00060 FN3 Fibronectin typ 28.5 97 0.0021 16.1 4.6 48 6-59 31-79 (83)
10 COG2226 UbiE Methylase involve 27.7 45 0.00099 26.0 2.0 44 28-75 107-150 (238)
11 PF01108 Tissue_fac: Tissue fa 27.2 84 0.0018 20.4 2.9 36 22-58 62-100 (107)
12 TIGR02567 YscW type III secret 26.5 52 0.0011 23.9 1.9 65 22-90 53-122 (124)
13 PF07933 DUF1681: Protein of u 23.3 37 0.00081 25.6 0.7 19 41-59 76-94 (160)
14 PF01209 Ubie_methyltran: ubiE 21.6 32 0.00069 26.0 0.1 44 29-76 105-148 (233)
15 PF01722 BolA: BolA-like prote 20.4 57 0.0012 21.2 1.1 33 54-92 42-74 (76)
No 1
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=92.46 E-value=0.44 Score=27.79 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=36.3
Q ss_pred ccceeEEEEEEeecCCCCCCcccceeeceeeccCcceeeEeeeeecc-eEEEEeeehhH
Q psy6481 2 AAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQIVLF-CTKLMVPEINV 59 (94)
Q Consensus 2 A~V~sYeLYayqE~~~~~~~ts~WKKIG~VKALPLPMACTLTqf~~~-~yYFaVRAVDv 59 (94)
..+..|+|+...++.. ..|..+ .+..- .+..++++...+ .|.|.|+|++-
T Consensus 28 ~~~~~y~v~~~~~~~~-----~~~~~~-~~~~~--~~~~~i~~L~p~t~Y~~~v~a~~~ 78 (85)
T PF00041_consen 28 GPITGYRVEYRSVNST-----SDWQEV-TVPGN--ETSYTITGLQPGTTYEFRVRAVNS 78 (85)
T ss_dssp SSESEEEEEEEETTSS-----SEEEEE-EEETT--SSEEEEESCCTTSEEEEEEEEEET
T ss_pred CCeeEEEEEEEecccc-----eeeeee-eeeee--eeeeeeccCCCCCEEEEEEEEEeC
Confidence 3678999999877652 245555 33333 558999999997 58999999874
No 2
>COG3648 Uricase (urate oxidase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.03 E-value=1.6 Score=36.02 Aligned_cols=40 Identities=35% Similarity=0.331 Sum_probs=32.2
Q ss_pred EeeehhHHHHHH--------HHHHhhcCCCCCcchhhhhhhccccccc
Q psy6481 53 MVPEINVISQIL--------LLFERKFAPGGNQTHDLALRRQVCYTPT 92 (94)
Q Consensus 53 aVRAVDvh~R~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (94)
|=+=||.+++|- .+|+|.=.||-.|+|||+.+||---+|+
T Consensus 91 akhFvdty~hi~g~~l~~t~~pwerm~~~~~pqthdl~F~r~~~er~~ 138 (299)
T COG3648 91 AKHFVDTYSHITGGFLEGTEHPWERMPTPAQPQTHDLAFVRQMPERRT 138 (299)
T ss_pred HHHHhhhcCccceeeecccccchhhccCCCCCCccceeeeecCCCCcc
Confidence 345577777775 7899999999999999999999766554
No 3
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=67.01 E-value=15 Score=21.51 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=29.9
Q ss_pred EEEEeecCCCCCCcccceeeceeeccCcceeeEeeeeecceEEEEeeehhHH
Q psy6481 9 LYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQIVLFCTKLMVPEINVI 60 (94)
Q Consensus 9 LYayqE~~~~~~~ts~WKKIG~VKALPLPMACTLTqf~~~~yYFaVRAVDvh 60 (94)
.|.|+-... ...|..++.-.. ..+.++..+|.|-|-|||.|..
T Consensus 9 ~Y~Y~l~g~----d~~W~~~~~~~~-----~~~~~~L~~G~Y~l~V~a~~~~ 51 (66)
T PF07495_consen 9 RYRYRLEGF----DDEWITLGSYSN-----SISYTNLPPGKYTLEVRAKDNN 51 (66)
T ss_dssp EEEEEEETT----ESSEEEESSTS------EEEEES--SEEEEEEEEEEETT
T ss_pred EEEEEEECC----CCeEEECCCCcE-----EEEEEeCCCEEEEEEEEEECCC
Confidence 467763321 245988877665 7899999999999999999854
No 4
>COG2107 Predicted periplasmic solute-binding protein [General function prediction only]
Probab=45.50 E-value=5.2 Score=32.70 Aligned_cols=31 Identities=32% Similarity=0.662 Sum_probs=20.3
Q ss_pred eEEEE-EEeecCCCCCCcccceeeceeeccCcceeeEee
Q psy6481 6 SYQLY-AYQENKNVPVNSSLWKNIGKLEALPLPMACTLT 43 (94)
Q Consensus 6 sYeLY-ayqE~~~~~~~ts~WKKIG~VKALPLPMACTLT 43 (94)
+|+.| .+..-+- -+.||.... |||||.|..-
T Consensus 149 ty~~~gL~~v~Dl----~d~W~~~~~---LPlPLG~~~i 180 (272)
T COG2107 149 TYALYGLKKVLDL----GDWWKEKTG---LPLPLGCIAI 180 (272)
T ss_pred chhhhCceEeeeH----HHHHHHhcC---CCcCcchhhh
Confidence 55555 4443321 368998755 9999999764
No 5
>PF01404 Ephrin_lbd: Ephrin receptor ligand binding domain; InterPro: IPR001090 Interactions between the Eph receptor tyrosine kinases and their membrane-bound ligands, ephrins are promiscuous, but largely fall into two groups: EphA receptors bind to GPI-anchored ephrin-A ligands, while EphB receptors bind to ephrin-B proteins that have a transmembrane and cytoplasmic domain []. Remarkably, ephrin-B proteins transduce signals, such that bidirectional signalling can occur upon interaction with Eph receptor. An important role of Eph receptors and ephrins is to mediate cell-contact-dependent repulsion. Eph receptors and ephrins also act at boundaries to channel neuronal growth cones along specific pathways, restrict the migration of neural crest cells, and via bidirectional signalling prevent intermingling between hindbrain segments. Intriguingly, Eph receptors and ephrins can also trigger an adhesive response of endothelial cells and are required for the remodelling of blood vessels []. Biochemical studies suggest that the extent of multimerisation of Eph receptors modulates the cellular response and that the actin cytoskeleton is one major target of the intracellular pathways activated by Eph receptors []. Eph receptors and ephrins have thus emerged as key regulators of the repulsion and adhesion of cells that underlie the establishment, maintenance, and remodelling of patterns of cellular organisation [].; GO: 0005003 ephrin receptor activity, 0005524 ATP binding, 0016020 membrane; PDB: 2BBA_A 2HLE_A 3NRU_L 1SHW_B 1KGY_A 3ETP_A 1NUK_A 2WO2_A 3CKH_A 2WO3_A ....
Probab=37.93 E-value=56 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=22.9
Q ss_pred eeEEEEEEeecC-C-----CCCCcccceeeceeeccCc
Q psy6481 5 ESYQLYAYQENK-N-----VPVNSSLWKNIGKLEALPL 36 (94)
Q Consensus 5 ~sYeLYayqE~~-~-----~~~~ts~WKKIG~VKALPL 36 (94)
+.+.||.|+-+. . .+.+...|.||+.|.|-..
T Consensus 90 ETFnLyy~esd~~~~~~~~~~~~~~~y~kvdTIAade~ 127 (178)
T PF01404_consen 90 ETFNLYYYESDSDDATSNSPAWNENPYTKVDTIAADES 127 (178)
T ss_dssp SEEEEEEEEESSSTTTSSSSSSSGCCSEEEEEEE-SSE
T ss_pred ceeeeeeeecccccccccccccCccccccccccccccc
Confidence 568999999444 2 2334568999999999887
No 6
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=30.07 E-value=39 Score=22.69 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=14.6
Q ss_pred HHHHHHhhcCCCCCcchh
Q psy6481 63 ILLLFERKFAPGGNQTHD 80 (94)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~ 80 (94)
+.+|+|.+|.||-+.+--
T Consensus 5 ~~~l~esIftPG~tp~li 22 (75)
T PF08636_consen 5 FEELWESIFTPGTTPTLI 22 (75)
T ss_pred HHHHHHHccCCCCChHHH
Confidence 568999999999976543
No 7
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=29.74 E-value=41 Score=23.36 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=33.7
Q ss_pred eeceeeccCcceeeEeeeeecceEEEEeeehhHHHHHHHHHHhhcCCCCCc
Q psy6481 27 NIGKLEALPLPMACTLTQIVLFCTKLMVPEINVISQILLLFERKFAPGGNQ 77 (94)
Q Consensus 27 KIG~VKALPLPMACTLTqf~~~~yYFaVRAVDvh~R~~~~~~~~~~~~~~~ 77 (94)
..|++..+|+|= ..|+.=..-|++|-++-..+++.-..|..+|||.-
T Consensus 31 ~~~d~~~lp~~~----~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 31 IEGDAIDLPFDD----CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred EEechhhCCCCC----CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 346777777642 13444345688888877888899999999999954
No 8
>KOG1233|consensus
Probab=28.54 E-value=98 Score=27.79 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=29.5
Q ss_pred cee-eEeeeeec-c-e-E-EEEeeehhHH------HHHH-HHHHhhcCCCCCcchhh
Q psy6481 37 PMA-CTLTQIVL-F-C-T-KLMVPEINVI------SQIL-LLFERKFAPGGNQTHDL 81 (94)
Q Consensus 37 PMA-CTLTqf~~-~-~-y-YFaVRAVDvh------~R~~-~~~~~~~~~~~~~~~~~ 81 (94)
|.+ |-+||--+ | + | ||+.++-|+. .||- ..=+.|.+-||.-.|.-
T Consensus 516 ~~s~CRVTQtYDAGACiYFYFgFn~rg~~dplevfe~iE~aARdEIlacGGSlSHHH 572 (613)
T KOG1233|consen 516 VLSNCRVTQTYDAGACIYFYFGFNARGLKDPLEVFERIETAARDEILACGGSLSHHH 572 (613)
T ss_pred cccceeEEEEecCceEEEEEEeeccccCCchHHHHHHHHHHhHHHHHhcCCcccccc
Confidence 445 99999655 6 3 4 9999987654 4443 22234678888877753
No 9
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=28.47 E-value=97 Score=16.12 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=28.6
Q ss_pred eEEEEEEeecCCCCCCcccceeeceeeccCcceeeEeeeeecc-eEEEEeeehhH
Q psy6481 6 SYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQIVLF-CTKLMVPEINV 59 (94)
Q Consensus 6 sYeLYayqE~~~~~~~ts~WKKIG~VKALPLPMACTLTqf~~~-~yYFaVRAVDv 59 (94)
+|.+......... ...|..+..... --.+++.....+ .|.|-|+|++.
T Consensus 31 ~y~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~i~~L~~~~~Y~v~v~a~~~ 79 (83)
T smart00060 31 GYIVGYRVEYREE---GSSWKEVNVTPS---STSYTLTGLKPGTEYEFRVRAVNG 79 (83)
T ss_pred ccEEEEEEEEecC---CCccEEEEecCC---ccEEEEeCcCCCCEEEEEEEEEcc
Confidence 4666544433211 134665533322 456888888886 68999999874
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=27.69 E-value=45 Score=26.02 Aligned_cols=44 Identities=25% Similarity=0.431 Sum_probs=34.4
Q ss_pred eceeeccCcceeeEeeeeecceEEEEeeehhHHHHHHHHHHhhcCCCC
Q psy6481 28 IGKLEALPLPMACTLTQIVLFCTKLMVPEINVISQILLLFERKFAPGG 75 (94)
Q Consensus 28 IG~VKALPLPMACTLTqf~~~~yYFaVRAVDvh~R~~~~~~~~~~~~~ 75 (94)
.|+.+.||+|= ..|+.=..=|++|.|+-..+.|.-+.|.-+|||
T Consensus 107 ~~dAe~LPf~D----~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG 150 (238)
T COG2226 107 VGDAENLPFPD----NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGG 150 (238)
T ss_pred EechhhCCCCC----CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCe
Confidence 45666666663 234444558999999999999999999999999
No 11
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=27.20 E-value=84 Score=20.43 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=24.5
Q ss_pred cccceeeceeeccCcceeeEeeeeec---ceEEEEeeehh
Q psy6481 22 SSLWKNIGKLEALPLPMACTLTQIVL---FCTKLMVPEIN 58 (94)
Q Consensus 22 ts~WKKIG~VKALPLPMACTLTqf~~---~~yYFaVRAVD 58 (94)
.+.||.+..=.-... ..|-||.... +.|++-|||+.
T Consensus 62 ~~~W~~v~~C~~i~~-~~Cdlt~~~~~~~~~Y~~rV~A~~ 100 (107)
T PF01108_consen 62 SSSWKDVPGCQNITE-TSCDLTDETSDPSESYYARVRAEV 100 (107)
T ss_dssp TSCEEEECCEEEESS-SEEECTTCCTTTTSEEEEEEEEEE
T ss_pred Ccceeeccceecccc-cceeCcchhhcCcCCEEEEEEEEe
Confidence 457998833222222 6899999764 57899999975
No 12
>TIGR02567 YscW type III secretion system chaperone YscW. This family of proteins is found within type III secretion operons. The protein has been characterized as a chaperone for the outer membrane pore component YscC (TIGR02516). YscW is a lipoprotein which is itself localized to the outer membrane and, it is believed, facilitates the oligomerization and localization of YscC.
Probab=26.55 E-value=52 Score=23.86 Aligned_cols=65 Identities=14% Similarity=0.011 Sum_probs=37.2
Q ss_pred cccceeeceeeccCcceeeEeee--eecceEEEEeeehhHHH--HHH-HHHHhhcCCCCCcchhhhhhhccccc
Q psy6481 22 SSLWKNIGKLEALPLPMACTLTQ--IVLFCTKLMVPEINVIS--QIL-LLFERKFAPGGNQTHDLALRRQVCYT 90 (94)
Q Consensus 22 ts~WKKIG~VKALPLPMACTLTq--f~~~~yYFaVRAVDvh~--R~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (94)
-..=++--++--+|||...+|.. +.+|..| |||-=.++ ++. +--.-++.. |+.-++-|+..-||+
T Consensus 53 l~vA~~~y~~~~lPv~FsF~l~~~q~~~g~~Y--v~A~L~~~g~~~~q~~~~~~v~~--~~~~~~~L~p~~c~p 122 (124)
T TIGR02567 53 LTVAEQHYRGVQLPVQYSFLLNPIQAGKGELY--LRGKLSWQGQRAVQAEAQQIFRA--GQKVVLRLFPIECYP 122 (124)
T ss_pred EEEEEeecccccccccEEEEcCHHHhccCceE--EEEEEEECCEEEEEEeeeeEEeC--CCeEEEEEeeccccC
Confidence 33445556788899999999985 5557777 87731110 000 000111222 256677777777775
No 13
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=23.34 E-value=37 Score=25.56 Aligned_cols=19 Identities=0% Similarity=0.009 Sum_probs=10.8
Q ss_pred EeeeeecceEEEEeeehhH
Q psy6481 41 TLTQIVLFCTKLMVPEINV 59 (94)
Q Consensus 41 TLTqf~~~~yYFaVRAVDv 59 (94)
.+....+|+.||+||-.|-
T Consensus 76 ~VE~v~DSSRYFvlRv~d~ 94 (160)
T PF07933_consen 76 AVEPVIDSSRYFVLRVQDP 94 (160)
T ss_dssp -EEE-TT--S-EEEEEEET
T ss_pred ceEEeecccceEEEEEEcC
Confidence 3444566889999999887
No 14
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=21.61 E-value=32 Score=26.02 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=29.0
Q ss_pred ceeeccCcceeeEeeeeecceEEEEeeehhHHHHHHHHHHhhcCCCCC
Q psy6481 29 GKLEALPLPMACTLTQIVLFCTKLMVPEINVISQILLLFERKFAPGGN 76 (94)
Q Consensus 29 G~VKALPLPMACTLTqf~~~~yYFaVRAVDvh~R~~~~~~~~~~~~~~ 76 (94)
|+.+.||+|= ..|+.=..=|++|-+.-..+.+.-..|..+|||-
T Consensus 105 ~da~~lp~~d----~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 105 GDAEDLPFPD----NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGR 148 (233)
T ss_dssp -BTTB--S-T----T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEE
T ss_pred cCHHHhcCCC----CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeE
Confidence 5666777763 3455555688999987788999999999999994
No 15
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=20.38 E-value=57 Score=21.17 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=25.2
Q ss_pred eeehhHHHHHHHHHHhhcCCCCCcchhhhhhhccccccc
Q psy6481 54 VPEINVISQILLLFERKFAPGGNQTHDLALRRQVCYTPT 92 (94)
Q Consensus 54 VRAVDvh~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (94)
.+-|..|+.+-.++...++.| .|-|.++ ||||.
T Consensus 42 ~s~i~rhr~V~~~L~~~i~~~---iHAlsi~---t~tp~ 74 (76)
T PF01722_consen 42 KSRIKRHRLVYKALKDEIKDG---IHALSIK---TYTPE 74 (76)
T ss_dssp S-HHHHHHHHHHHTHHHHGCT---CSEEEEE---EE-HH
T ss_pred CCHHHHHHHHHHHHHHHhcCC---ceEEEEE---cCCcc
Confidence 356889999999999999777 8988774 77773
Done!