RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6481
         (94 letters)



>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic
           subunit.
          Length = 1079

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 28  IGKLEALPLPMACTLTQIVLFCTKLMVPEINVISQI--LLLFERKFAPG 74
           I  + ++PL + CTL  + L   K ++P+I+ I+ I  + LF   FA G
Sbjct: 857 IYPITSIPLLLYCTLPAVCLLTGKFIIPQISNIASIWFISLFLSIFATG 905


>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase.  Cellulose, an
           aggregate of unbranched polymers of beta-1,4-linked
           glucose residues, is the major component of wood and
           thus paper, and is synthesised by plants, most algae,
           some bacteria and fungi, and even some animals. The
           genes that synthesise cellulose in higher plants differ
           greatly from the well-characterized genes found in
           Acetobacter and Agrobacterium sp. More correctly
           designated as 'cellulose synthase catalytic subunits',
           plant cellulose synthase (CesA) proteins are integral
           membrane proteins, approximately 1,000 amino acids in
           length. There are a number of highly conserved residues,
           including several motifs shown to be necessary for
           processive glycosyltransferase activity.
          Length = 716

 Score = 31.6 bits (72), Expect = 0.035
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 33  ALPLPMACTLTQIVLFCTKLMVPEINVISQILLL 66
           ++PL   C L  I L   K +VP ++  + I  L
Sbjct: 502 SIPLIAYCFLPAICLLTGKFIVPTLSNYASIYFL 535


>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
          Length = 1094

 Score = 30.6 bits (69), Expect = 0.081
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 33  ALPLPMACTLTQIVLFCTKLMVPEINVISQILLL 66
           ++PL + CTL  I L   K +VPEI+  + IL +
Sbjct: 878 SIPLIVYCTLPAICLLTGKFIVPEISNYASILFM 911


>gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase.
          Length = 1085

 Score = 28.8 bits (64), Expect = 0.33
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 31  LEALPLPMACTLTQIVLFCTKLMVPEINVISQI--LLLFERKFAPG 74
           + ++PL   C L    L   K ++PEI+  + +  +LLF   FA G
Sbjct: 865 ITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFISIFATG 910


>gnl|CDD|226174 COG3648, COG3648, Uricase (urate oxidase) [Secondary metabolites
           biosynthesis, transport, and catabolism].
          Length = 299

 Score = 28.7 bits (64), Expect = 0.42
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 65  LLFERKFAPGGNQTHDLALRRQVCYTPT 92
             +ER   P   QTHDLA  RQ+    T
Sbjct: 111 HPWERMPTPAQPQTHDLAFVRQMPERRT 138


>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase.
          Length = 1040

 Score = 28.1 bits (62), Expect = 0.66
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 9   LYAYQENKNVPVNSSLWKN--IGKLEALPLPMACTLTQIVLFCTKLMVPEINVISQILL- 65
           LY Y+      +    + N  I    +LPL   CTL  I L   K ++P I+  + +   
Sbjct: 798 LYGYKGGNLKWLERFAYVNTTIYPFTSLPLLAYCTLPAICLLTGKFIMPPISTFASLFFI 857

Query: 66  -LFERKFAPG 74
            LF   FA G
Sbjct: 858 ALFMSIFATG 867


>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
          Length = 977

 Score = 26.1 bits (57), Expect = 2.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 33  ALPLPMACTLTQIVLFCTKLMVPEINVISQILLL 66
           +LPL   CTL  I L   K ++P ++ ++ +L L
Sbjct: 759 SLPLIAYCTLPAICLLTGKFIIPTLSNLASMLFL 792


>gnl|CDD|240435 PTZ00485, PTZ00485, aldolase 1-epimerase; Provisional.
          Length = 376

 Score = 25.7 bits (56), Expect = 3.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 2  AAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACT 41
          A++ S Q+Y   +NK + VN    KN  +  A P  M  T
Sbjct: 32 ASVASIQVYHPADNKWIEVNCGYPKNPEEAYADPDYMGAT 71


>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
           envelope biogenesis, outer membrane].
          Length = 835

 Score = 25.4 bits (56), Expect = 5.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 58  NVISQILLLFERKFAPG 74
           N +S +++LFER    G
Sbjct: 648 NFVSGLIILFERPVKVG 664


>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
           superfamily II helicase [DNA replication, recombination,
           and repair].
          Length = 730

 Score = 25.0 bits (55), Expect = 6.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 52  LMVPEINVISQILLLFERKFA 72
           ++VPEI +  Q+L  F+ +F 
Sbjct: 250 VLVPEIALTPQLLARFKARFG 270


>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
           subunit.
          Length = 1044

 Score = 24.9 bits (54), Expect = 7.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 33  ALPLPMACTLTQIVLFCTKLMVPEINVISQILLL 66
           ++PL   CT+  + L   K ++P +N ++ I  L
Sbjct: 826 SIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFL 859


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,686,834
Number of extensions: 364033
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 18
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.1 bits)