RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6481
         (94 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.053
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 23/89 (25%)

Query: 18  VPVNSSLWKNIGKLEA-----LPLPMACT------------LTQIVLFCTKLMVP-EINV 59
           + V ++ +    +L+      LP P                + + + + + L+ P ++  
Sbjct: 20  LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79

Query: 60  ISQILLL----FERKFAPGGNQTHDLALR 84
             Q+L L    FE  +   GN  H LA +
Sbjct: 80  FDQVLNLCLTEFENCYL-EGNDIHALAAK 107


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.6 bits (60), Expect = 0.50
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 35/62 (56%)

Query: 26 KNIGKLEALPLPMACTLTQIVLFCTKLMVPEINVISQILLLFERKFAPGGNQTHDLALRR 85
          + + KL+A       +L        KL   +    S          AP       LA++ 
Sbjct: 20 QALKKLQA-------SL--------KLYADD----S----------APA------LAIKA 44

Query: 86 QV 87
           +
Sbjct: 45 TM 46


>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
          sulfur oxidation, thiol- disulfide oxidoreductase; HET:
          MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
          Length = 116

 Score = 24.2 bits (52), Expect = 7.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 76 NQTHDLALRRQVCYTPTIV 94
               L L R V +TPT V
Sbjct: 63 PLPPGLELARPVTFTPTFV 81


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,354,792
Number of extensions: 62577
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 5
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.8 bits)