RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6481
         (94 letters)



>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein
          MscS (YggB), middle domain {Escherichia coli [TaxId:
          562]}
          Length = 67

 Score = 23.5 bits (51), Expect = 2.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 58 NVISQILLLFERKFAPG 74
          N+ + +LL+  R F  G
Sbjct: 5  NLAAGVLLVMFRPFRAG 21


>d1edqa1 b.1.18.2 (A:24-132) Chitinase A, N-terminal domain N
          {Serratia marcescens [TaxId: 615]}
          Length = 109

 Score = 22.9 bits (49), Expect = 7.1
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 1  MAAIESYQLYAYQENKNVPVNSSLWKN 27
           AA     L   +   +V V+ +LW  
Sbjct: 22 QAATAYNNLVKVKNAADVSVSWNLWNG 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 327,305
Number of extensions: 11974
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 3
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.0 bits)