Query psy6490
Match_columns 398
No_of_seqs 470 out of 3044
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 19:26:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 2.9E-35 6.3E-40 275.6 22.9 174 156-332 102-279 (346)
2 TIGR01645 half-pint poly-U bin 100.0 7.1E-35 1.5E-39 286.3 23.4 169 160-328 106-284 (612)
3 KOG0148|consensus 100.0 3.2E-33 6.9E-38 239.2 16.5 166 160-331 61-241 (321)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.8E-33 1.7E-37 264.9 20.2 215 108-330 44-351 (352)
5 KOG0144|consensus 100.0 4.1E-32 8.8E-37 246.2 14.9 177 155-334 28-212 (510)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.8E-31 6.1E-36 254.2 19.6 167 160-329 2-172 (352)
7 TIGR01628 PABP-1234 polyadenyl 100.0 6.7E-31 1.5E-35 266.1 21.4 221 108-333 128-369 (562)
8 TIGR01622 SF-CC1 splicing fact 100.0 1.6E-30 3.5E-35 257.4 21.4 170 158-327 86-265 (457)
9 KOG0145|consensus 100.0 2.7E-30 5.8E-35 219.9 15.6 213 108-328 82-358 (360)
10 TIGR01628 PABP-1234 polyadenyl 100.0 7.6E-30 1.6E-34 258.4 20.9 217 107-331 40-264 (562)
11 KOG0145|consensus 100.0 2.4E-29 5.1E-34 214.1 13.4 170 157-329 37-210 (360)
12 TIGR01648 hnRNP-R-Q heterogene 100.0 3E-28 6.6E-33 239.4 21.7 162 160-330 57-309 (578)
13 KOG0117|consensus 100.0 4.8E-29 1E-33 227.4 14.7 168 159-334 81-337 (506)
14 KOG0131|consensus 100.0 2.1E-29 4.7E-34 203.9 10.6 170 160-331 8-180 (203)
15 KOG0124|consensus 100.0 7.4E-28 1.6E-32 214.1 14.4 169 160-328 112-290 (544)
16 KOG0127|consensus 100.0 4.1E-27 9E-32 219.4 19.1 174 159-333 115-383 (678)
17 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.1E-27 8.8E-32 236.3 20.3 166 156-327 170-374 (509)
18 KOG0127|consensus 99.9 5.6E-27 1.2E-31 218.5 15.7 170 162-332 6-200 (678)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 9.9E-27 2.1E-31 230.2 18.3 159 160-328 1-174 (481)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.3E-26 7.2E-31 229.7 21.2 220 109-329 223-503 (509)
21 KOG4205|consensus 99.9 3.6E-27 7.8E-32 214.3 12.5 175 160-334 5-182 (311)
22 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.2E-26 9.2E-31 225.7 18.4 163 159-328 273-480 (481)
23 KOG0109|consensus 99.9 2.4E-27 5.2E-32 205.2 8.0 151 162-333 3-155 (346)
24 TIGR01622 SF-CC1 splicing fact 99.9 6.5E-24 1.4E-28 210.3 20.3 218 108-330 130-450 (457)
25 KOG0123|consensus 99.9 2.5E-24 5.3E-29 202.9 16.1 157 162-335 2-160 (369)
26 KOG0148|consensus 99.9 6.6E-24 1.4E-28 182.2 11.3 137 159-329 4-143 (321)
27 KOG0123|consensus 99.9 2.2E-23 4.7E-28 196.5 15.0 211 108-335 36-253 (369)
28 TIGR01645 half-pint poly-U bin 99.9 2.5E-22 5.5E-27 198.0 20.8 133 106-238 146-282 (612)
29 KOG0146|consensus 99.9 2.6E-23 5.7E-28 178.0 7.3 172 160-332 18-369 (371)
30 KOG0110|consensus 99.9 1.1E-22 2.3E-27 196.1 11.6 170 162-331 516-696 (725)
31 KOG0147|consensus 99.9 2.3E-23 5E-28 195.5 6.1 177 156-332 174-362 (549)
32 KOG0144|consensus 99.9 2.2E-22 4.7E-27 183.2 9.0 169 160-329 123-505 (510)
33 KOG4211|consensus 99.8 2E-20 4.3E-25 173.7 15.0 173 159-334 8-188 (510)
34 PLN03134 glycine-rich RNA-bind 99.8 4.1E-19 8.8E-24 146.2 13.2 86 246-331 31-117 (144)
35 KOG0105|consensus 99.8 1.6E-18 3.4E-23 141.0 12.8 147 160-316 5-176 (241)
36 KOG4206|consensus 99.8 1.8E-17 3.9E-22 140.3 15.5 159 160-326 8-220 (221)
37 KOG0147|consensus 99.8 2.3E-18 5.1E-23 162.1 10.8 163 161-328 278-528 (549)
38 KOG4212|consensus 99.8 1.8E-17 3.9E-22 151.4 15.4 164 160-325 43-291 (608)
39 KOG1548|consensus 99.7 1.2E-16 2.7E-21 142.2 15.7 166 159-329 132-353 (382)
40 PLN03134 glycine-rich RNA-bind 99.7 3.7E-17 8E-22 134.6 11.0 84 159-242 32-116 (144)
41 KOG0124|consensus 99.7 6.4E-17 1.4E-21 144.6 12.0 219 108-326 154-533 (544)
42 KOG0149|consensus 99.7 3.3E-17 7.1E-22 139.0 7.1 82 246-327 9-90 (247)
43 KOG0149|consensus 99.7 1.8E-16 3.9E-21 134.5 9.0 83 159-241 10-92 (247)
44 KOG0125|consensus 99.7 2E-16 4.4E-21 139.9 9.6 105 224-333 74-179 (376)
45 TIGR01659 sex-lethal sex-letha 99.7 3.3E-16 7.2E-21 147.2 11.3 99 246-348 104-203 (346)
46 KOG0122|consensus 99.7 3.6E-16 7.7E-21 133.1 9.1 82 247-328 187-269 (270)
47 PF00076 RRM_1: RNA recognitio 99.7 8.7E-16 1.9E-20 110.8 9.7 69 252-321 1-70 (70)
48 KOG0110|consensus 99.7 1.8E-15 3.9E-20 146.6 14.3 164 157-326 381-596 (725)
49 KOG0106|consensus 99.6 2.6E-16 5.6E-21 134.8 6.0 153 162-330 2-173 (216)
50 KOG0126|consensus 99.6 2.6E-17 5.6E-22 133.7 -0.3 100 226-325 12-112 (219)
51 KOG1457|consensus 99.6 8.7E-15 1.9E-19 122.9 13.9 155 157-315 30-273 (284)
52 PLN03120 nucleic acid binding 99.6 2E-15 4.4E-20 132.7 10.2 77 249-328 4-80 (260)
53 KOG0113|consensus 99.6 3.3E-15 7.2E-20 130.7 10.8 90 242-331 94-184 (335)
54 TIGR01648 hnRNP-R-Q heterogene 99.6 1.5E-15 3.3E-20 150.1 9.6 160 108-278 181-370 (578)
55 KOG0125|consensus 99.6 2.2E-15 4.7E-20 133.4 7.6 82 159-242 94-176 (376)
56 KOG0129|consensus 99.6 5.4E-14 1.2E-18 132.2 16.2 170 156-325 254-451 (520)
57 KOG0121|consensus 99.6 3.8E-15 8.2E-20 114.2 6.6 81 248-328 35-116 (153)
58 PF00076 RRM_1: RNA recognitio 99.6 5.6E-15 1.2E-19 106.5 7.0 69 164-233 1-70 (70)
59 COG0724 RNA-binding proteins ( 99.6 1.5E-14 3.3E-19 133.3 11.8 126 161-286 115-262 (306)
60 PF14259 RRM_6: RNA recognitio 99.6 1.4E-14 3.1E-19 104.5 8.6 69 252-321 1-70 (70)
61 KOG1190|consensus 99.6 4E-14 8.6E-19 128.8 13.2 158 161-327 297-490 (492)
62 KOG0122|consensus 99.6 6.5E-15 1.4E-19 125.5 7.4 81 160-240 188-269 (270)
63 KOG1365|consensus 99.5 2.3E-14 5E-19 129.2 10.3 171 160-332 160-366 (508)
64 KOG0121|consensus 99.5 9.7E-15 2.1E-19 112.0 6.3 79 160-238 35-114 (153)
65 KOG0120|consensus 99.5 3.8E-14 8.3E-19 135.6 11.8 173 157-329 285-493 (500)
66 KOG0126|consensus 99.5 9.2E-16 2E-20 124.7 0.6 92 152-243 26-118 (219)
67 PLN03120 nucleic acid binding 99.5 2.1E-14 4.6E-19 126.3 9.0 79 160-241 3-81 (260)
68 PLN03121 nucleic acid binding 99.5 4.6E-14 1E-18 122.2 10.2 77 248-327 4-80 (243)
69 PF14259 RRM_6: RNA recognitio 99.5 3.3E-14 7.2E-19 102.6 7.0 69 164-233 1-70 (70)
70 KOG4207|consensus 99.5 2.2E-14 4.7E-19 119.2 6.7 83 245-327 9-92 (256)
71 KOG0114|consensus 99.5 1.4E-13 3E-18 101.7 9.6 84 246-332 15-99 (124)
72 KOG0117|consensus 99.5 1.1E-13 2.3E-18 127.5 11.0 81 247-327 81-163 (506)
73 KOG0113|consensus 99.5 4.8E-14 1E-18 123.5 8.3 80 159-238 99-179 (335)
74 KOG0107|consensus 99.5 5.1E-14 1.1E-18 114.1 7.7 77 248-329 9-86 (195)
75 KOG4212|consensus 99.5 4.8E-13 1E-17 122.7 14.8 72 249-325 536-608 (608)
76 KOG0130|consensus 99.5 5.7E-14 1.2E-18 108.7 6.0 88 243-330 66-154 (170)
77 PLN03121 nucleic acid binding 99.5 1.6E-13 3.4E-18 118.9 9.1 78 160-240 4-81 (243)
78 PLN03213 repressor of silencin 99.5 1.8E-13 4E-18 127.2 9.7 78 247-328 8-88 (759)
79 KOG0146|consensus 99.5 1.1E-12 2.3E-17 113.2 13.4 103 229-335 2-108 (371)
80 KOG0107|consensus 99.5 9.9E-14 2.1E-18 112.5 6.5 78 160-242 9-87 (195)
81 KOG0114|consensus 99.5 1.6E-13 3.6E-18 101.3 6.7 105 156-274 13-118 (124)
82 smart00362 RRM_2 RNA recogniti 99.4 7.5E-13 1.6E-17 95.3 9.5 71 251-323 1-72 (72)
83 KOG4207|consensus 99.4 2.3E-13 5E-18 113.1 6.5 83 157-239 9-92 (256)
84 smart00360 RRM RNA recognition 99.4 9E-13 1.9E-17 94.5 8.9 70 254-323 1-71 (71)
85 KOG0108|consensus 99.4 6.6E-13 1.4E-17 126.6 9.4 86 250-335 19-105 (435)
86 KOG0108|consensus 99.4 4.8E-13 1E-17 127.5 8.4 81 162-242 19-100 (435)
87 KOG0111|consensus 99.4 1.7E-13 3.8E-18 114.8 3.7 85 246-330 7-92 (298)
88 PLN03213 repressor of silencin 99.4 8.2E-13 1.8E-17 123.0 8.1 77 159-239 8-87 (759)
89 KOG0120|consensus 99.4 1.4E-12 3E-17 125.1 9.6 169 157-331 171-372 (500)
90 KOG0131|consensus 99.4 5.9E-13 1.3E-17 108.7 5.7 80 247-326 7-87 (203)
91 smart00362 RRM_2 RNA recogniti 99.4 1.9E-12 4.2E-17 93.1 7.9 70 163-234 1-71 (72)
92 KOG1456|consensus 99.4 2.2E-11 4.8E-16 109.8 15.6 161 158-329 28-200 (494)
93 cd00590 RRM RRM (RNA recogniti 99.4 8.1E-12 1.7E-16 90.3 10.2 73 251-324 1-74 (74)
94 KOG1190|consensus 99.4 3E-12 6.4E-17 116.8 9.5 158 159-327 26-227 (492)
95 KOG0226|consensus 99.3 8.1E-13 1.8E-17 113.4 5.0 169 160-329 95-271 (290)
96 KOG0111|consensus 99.3 9.9E-13 2.2E-17 110.3 4.9 83 160-242 9-92 (298)
97 smart00360 RRM RNA recognition 99.3 4.1E-12 8.9E-17 91.0 7.6 69 166-234 1-70 (71)
98 COG0724 RNA-binding proteins ( 99.3 5E-12 1.1E-16 116.5 9.9 78 249-326 115-193 (306)
99 KOG1365|consensus 99.3 3.6E-12 7.8E-17 115.2 8.4 176 157-333 56-248 (508)
100 KOG4205|consensus 99.3 2E-12 4.3E-17 118.3 4.9 103 248-350 5-109 (311)
101 KOG4210|consensus 99.3 2.4E-12 5.1E-17 117.5 5.3 173 160-332 87-268 (285)
102 KOG4307|consensus 99.3 1.1E-10 2.3E-15 113.2 16.5 175 155-330 305-516 (944)
103 smart00361 RRM_1 RNA recogniti 99.3 1.9E-11 4.2E-16 87.9 8.4 61 263-323 2-70 (70)
104 KOG4211|consensus 99.3 4.4E-11 9.6E-16 112.0 12.8 164 159-325 101-355 (510)
105 KOG0109|consensus 99.3 5.4E-12 1.2E-16 110.3 6.0 86 250-349 3-89 (346)
106 PF13893 RRM_5: RNA recognitio 99.3 2.9E-11 6.4E-16 82.9 8.2 55 266-325 1-56 (56)
107 KOG0130|consensus 99.3 1E-11 2.2E-16 96.3 6.0 82 160-241 71-153 (170)
108 KOG0415|consensus 99.2 8.6E-12 1.9E-16 111.7 6.1 83 246-328 236-319 (479)
109 cd00590 RRM RRM (RNA recogniti 99.2 3.2E-11 7E-16 87.1 7.9 72 163-235 1-73 (74)
110 KOG0105|consensus 99.2 2.2E-11 4.8E-16 99.6 6.5 80 247-329 4-84 (241)
111 KOG4208|consensus 99.2 9E-11 2E-15 98.2 9.4 92 246-337 46-139 (214)
112 KOG4454|consensus 99.2 5.9E-12 1.3E-16 105.7 1.8 122 160-300 8-134 (267)
113 KOG0153|consensus 99.2 5.8E-11 1.3E-15 106.5 8.1 80 243-328 222-303 (377)
114 smart00361 RRM_1 RNA recogniti 99.2 8.3E-11 1.8E-15 84.5 6.3 60 175-234 2-69 (70)
115 KOG0128|consensus 99.2 2.7E-12 5.9E-17 127.1 -2.2 148 160-327 666-814 (881)
116 KOG0132|consensus 99.1 2.4E-10 5.1E-15 112.3 8.3 80 247-332 419-499 (894)
117 KOG1456|consensus 99.1 4.4E-09 9.6E-14 95.2 15.0 166 156-328 282-491 (494)
118 KOG4206|consensus 99.1 3.4E-10 7.4E-15 96.4 7.5 84 247-333 7-95 (221)
119 KOG0132|consensus 99.1 1.7E-10 3.6E-15 113.3 6.3 109 158-272 418-529 (894)
120 KOG0112|consensus 99.0 2.9E-10 6.3E-15 113.4 6.1 163 155-329 366-532 (975)
121 PF13893 RRM_5: RNA recognitio 99.0 3.2E-10 6.9E-15 77.7 4.0 55 178-237 1-56 (56)
122 KOG4208|consensus 99.0 7.3E-10 1.6E-14 92.8 6.4 84 157-240 45-130 (214)
123 KOG0153|consensus 98.9 1.5E-09 3.3E-14 97.5 6.8 80 154-239 221-302 (377)
124 KOG0415|consensus 98.9 8.4E-10 1.8E-14 99.1 5.2 82 158-239 236-318 (479)
125 KOG0116|consensus 98.9 3.4E-09 7.5E-14 100.8 8.0 81 249-329 288-368 (419)
126 KOG0226|consensus 98.9 1.5E-09 3.3E-14 93.5 4.1 87 155-241 184-271 (290)
127 KOG4661|consensus 98.9 5.6E-09 1.2E-13 99.3 8.3 81 160-240 404-485 (940)
128 KOG4660|consensus 98.8 4.9E-09 1.1E-13 100.0 5.8 159 156-327 70-249 (549)
129 KOG4307|consensus 98.8 1.3E-08 2.7E-13 99.1 7.6 74 251-324 869-943 (944)
130 KOG0533|consensus 98.8 2.2E-08 4.7E-13 88.3 8.4 85 246-331 80-165 (243)
131 KOG0116|consensus 98.8 1.6E-08 3.6E-13 96.2 7.0 82 160-241 287-368 (419)
132 KOG4661|consensus 98.8 2.6E-08 5.6E-13 94.9 8.2 81 248-328 404-485 (940)
133 KOG4209|consensus 98.7 1.6E-08 3.5E-13 89.4 5.1 83 246-328 98-180 (231)
134 PF04059 RRM_2: RNA recognitio 98.7 1.4E-07 3.1E-12 71.1 9.1 79 250-328 2-87 (97)
135 KOG4209|consensus 98.7 2.6E-08 5.7E-13 88.1 5.0 85 156-240 96-180 (231)
136 KOG1457|consensus 98.6 1.6E-07 3.4E-12 79.6 8.3 89 247-335 32-125 (284)
137 KOG0533|consensus 98.6 1.1E-07 2.3E-12 84.0 7.0 83 157-240 79-162 (243)
138 KOG1548|consensus 98.6 1.9E-07 4.1E-12 84.2 7.6 78 248-326 133-219 (382)
139 KOG0128|consensus 98.5 2.4E-08 5.1E-13 99.7 -0.8 158 160-317 570-735 (881)
140 KOG4660|consensus 98.5 1.6E-07 3.4E-12 89.9 4.7 73 244-321 70-143 (549)
141 KOG4676|consensus 98.5 8.2E-08 1.8E-12 87.7 2.4 159 161-323 7-221 (479)
142 KOG0106|consensus 98.4 1.8E-07 3.9E-12 80.7 4.2 71 250-328 2-73 (216)
143 PF04059 RRM_2: RNA recognitio 98.4 1.3E-06 2.7E-11 66.0 8.1 60 162-221 2-63 (97)
144 KOG2193|consensus 98.4 2.3E-08 5E-13 92.0 -2.0 151 162-329 2-158 (584)
145 KOG4454|consensus 98.4 1.6E-07 3.5E-12 79.4 2.7 78 247-326 7-85 (267)
146 PF11608 Limkain-b1: Limkain b 98.3 3E-06 6.6E-11 60.9 6.2 69 162-240 3-77 (90)
147 KOG0151|consensus 98.2 3.2E-06 7E-11 83.0 7.3 82 158-239 171-256 (877)
148 KOG0151|consensus 98.2 2.5E-06 5.5E-11 83.7 6.2 81 247-327 172-256 (877)
149 PF08777 RRM_3: RNA binding mo 98.1 5.5E-06 1.2E-10 64.1 5.6 75 250-330 2-82 (105)
150 KOG1995|consensus 98.0 4.9E-06 1.1E-10 75.9 4.1 85 246-330 63-156 (351)
151 PF11608 Limkain-b1: Limkain b 97.9 5.1E-05 1.1E-09 54.6 6.6 68 250-327 3-76 (90)
152 KOG4849|consensus 97.9 1E-05 2.3E-10 73.1 3.7 79 158-236 77-158 (498)
153 COG5175 MOT2 Transcriptional r 97.8 5E-05 1.1E-09 68.5 6.7 80 249-328 114-203 (480)
154 KOG1855|consensus 97.8 2.4E-05 5.2E-10 72.8 4.1 66 247-312 229-307 (484)
155 KOG4210|consensus 97.8 2.4E-05 5.2E-10 71.8 4.0 83 160-242 183-266 (285)
156 KOG1995|consensus 97.7 6.4E-05 1.4E-09 68.8 6.2 84 158-241 63-155 (351)
157 COG5175 MOT2 Transcriptional r 97.7 5.8E-05 1.3E-09 68.1 5.0 111 160-270 113-241 (480)
158 KOG4849|consensus 97.6 3.6E-05 7.8E-10 69.7 3.2 78 248-325 79-159 (498)
159 KOG1996|consensus 97.6 0.00018 3.9E-09 63.8 7.3 80 251-330 283-369 (378)
160 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00018 3.9E-09 54.8 6.3 79 248-327 5-91 (100)
161 KOG3152|consensus 97.5 5E-05 1.1E-09 66.1 2.5 72 248-319 73-157 (278)
162 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00026 5.6E-09 47.4 5.2 52 162-220 2-53 (53)
163 KOG3152|consensus 97.5 7.4E-05 1.6E-09 65.1 3.0 73 160-232 73-158 (278)
164 PF08777 RRM_3: RNA binding mo 97.4 0.00035 7.5E-09 54.1 5.5 54 162-221 2-55 (105)
165 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.00063 1.4E-08 51.8 6.2 72 160-232 5-83 (100)
166 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00043 9.2E-09 46.3 4.6 52 250-308 2-53 (53)
167 PF08952 DUF1866: Domain of un 97.3 0.001 2.2E-08 53.8 7.3 57 264-328 51-107 (146)
168 KOG2314|consensus 97.3 0.00051 1.1E-08 66.3 6.4 73 154-227 51-130 (698)
169 KOG0115|consensus 97.3 0.00027 5.9E-09 61.7 4.1 92 222-324 14-110 (275)
170 KOG0129|consensus 97.3 0.00099 2.1E-08 63.9 8.0 64 158-221 367-431 (520)
171 KOG2314|consensus 97.1 0.0007 1.5E-08 65.4 5.6 76 248-324 57-140 (698)
172 KOG1855|consensus 97.1 0.00068 1.5E-08 63.4 4.6 70 156-225 226-308 (484)
173 KOG2202|consensus 96.8 0.00063 1.4E-08 59.6 1.8 64 264-328 83-148 (260)
174 KOG2253|consensus 96.8 0.00079 1.7E-08 66.5 2.5 109 160-277 39-163 (668)
175 KOG4676|consensus 96.4 0.0046 1E-07 57.3 4.9 77 250-326 8-87 (479)
176 KOG0112|consensus 96.4 0.0016 3.6E-08 66.3 1.8 80 247-327 370-450 (975)
177 PF08675 RNA_bind: RNA binding 96.3 0.016 3.4E-07 42.0 6.2 54 248-310 8-61 (87)
178 KOG1924|consensus 96.2 0.023 5E-07 57.4 8.9 8 160-167 640-647 (1102)
179 KOG0115|consensus 96.2 0.015 3.3E-07 51.1 6.7 59 162-221 32-90 (275)
180 KOG2135|consensus 96.2 0.0087 1.9E-07 56.9 5.6 70 254-329 377-447 (526)
181 KOG1996|consensus 96.2 0.012 2.6E-07 52.6 5.9 62 176-237 301-364 (378)
182 PF08952 DUF1866: Domain of un 96.1 0.01 2.2E-07 48.0 4.8 72 160-239 26-106 (146)
183 KOG2416|consensus 96.1 0.0081 1.7E-07 58.7 4.8 82 245-332 440-526 (718)
184 PF10309 DUF2414: Protein of u 95.8 0.056 1.2E-06 37.1 6.6 54 160-221 4-60 (62)
185 KOG2202|consensus 95.8 0.0038 8.3E-08 54.8 1.1 61 178-239 85-147 (260)
186 PF08675 RNA_bind: RNA binding 95.7 0.064 1.4E-06 38.9 6.9 53 160-221 8-60 (87)
187 KOG2068|consensus 95.4 0.015 3.3E-07 53.3 3.7 110 160-269 76-200 (327)
188 PF10309 DUF2414: Protein of u 95.4 0.09 1.9E-06 36.1 6.6 52 249-308 5-59 (62)
189 KOG2416|consensus 95.2 0.011 2.4E-07 57.8 2.2 75 157-237 440-519 (718)
190 KOG4285|consensus 95.1 0.08 1.7E-06 47.7 7.0 80 153-239 187-269 (350)
191 PF07576 BRAP2: BRCA1-associat 95.0 0.27 5.9E-06 38.2 9.1 66 160-227 12-79 (110)
192 PF14111 DUF4283: Domain of un 95.0 0.076 1.7E-06 44.0 6.4 116 162-282 16-138 (153)
193 KOG2068|consensus 95.0 0.011 2.4E-07 54.1 1.4 82 250-331 78-166 (327)
194 KOG4285|consensus 94.9 0.071 1.5E-06 48.0 6.3 79 249-334 197-276 (350)
195 KOG2135|consensus 94.9 0.017 3.6E-07 55.1 2.3 80 156-241 367-447 (526)
196 KOG2193|consensus 94.7 0.045 9.7E-07 51.5 4.7 77 250-334 2-82 (584)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 94.5 0.036 7.8E-07 47.2 3.2 81 248-328 6-98 (176)
198 KOG2591|consensus 94.4 0.11 2.4E-06 50.7 6.5 71 156-233 170-245 (684)
199 KOG2591|consensus 94.4 0.1 2.2E-06 51.0 6.2 69 247-322 173-246 (684)
200 PF03880 DbpA: DbpA RNA bindin 94.3 0.2 4.3E-06 36.0 6.4 59 259-325 11-74 (74)
201 PF04847 Calcipressin: Calcipr 94.0 0.14 3.1E-06 43.8 6.0 61 262-328 8-71 (184)
202 PF07576 BRAP2: BRCA1-associat 93.9 0.58 1.3E-05 36.4 8.6 75 249-325 13-92 (110)
203 PF15023 DUF4523: Protein of u 93.4 0.28 6.1E-06 39.4 6.1 74 157-237 82-159 (166)
204 PF07292 NID: Nmi/IFP 35 domai 93.3 0.03 6.4E-07 41.5 0.5 66 206-271 1-74 (88)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 93.3 0.098 2.1E-06 44.6 3.7 69 160-228 6-81 (176)
206 PF10567 Nab6_mRNP_bdg: RNA-re 93.2 2.1 4.6E-05 38.8 11.9 168 157-325 11-229 (309)
207 PF15023 DUF4523: Protein of u 91.7 0.57 1.2E-05 37.7 5.9 72 246-325 83-159 (166)
208 PF11767 SET_assoc: Histone ly 90.6 0.59 1.3E-05 32.6 4.5 52 172-232 11-63 (66)
209 KOG0804|consensus 90.1 1.1 2.5E-05 42.8 7.3 68 160-229 73-142 (493)
210 KOG3702|consensus 89.4 0.85 1.8E-05 45.8 6.1 72 251-322 513-584 (681)
211 KOG2891|consensus 89.3 0.46 9.9E-06 42.4 3.8 38 246-283 146-195 (445)
212 KOG0804|consensus 88.8 1.1 2.3E-05 43.0 6.0 67 249-317 74-142 (493)
213 KOG2253|consensus 88.3 0.26 5.7E-06 49.3 1.8 72 245-325 36-108 (668)
214 PF04847 Calcipressin: Calcipr 88.1 0.79 1.7E-05 39.3 4.4 59 174-238 8-69 (184)
215 PF11767 SET_assoc: Histone ly 84.1 5.6 0.00012 27.7 6.2 54 260-322 11-65 (66)
216 PF03468 XS: XS domain; Inter 83.9 1.4 3E-05 34.7 3.5 47 261-310 29-76 (116)
217 TIGR02542 B_forsyth_147 Bacter 83.7 2.2 4.7E-05 32.9 4.3 45 257-301 82-129 (145)
218 KOG4483|consensus 83.3 2.5 5.3E-05 39.9 5.3 58 158-222 388-446 (528)
219 KOG4410|consensus 83.2 3.8 8.3E-05 36.9 6.3 52 158-214 327-378 (396)
220 KOG2318|consensus 82.9 5.9 0.00013 39.4 7.9 126 158-324 171-304 (650)
221 KOG4574|consensus 82.0 1 2.2E-05 46.5 2.5 77 252-334 301-380 (1007)
222 PF07530 PRE_C2HC: Associated 80.6 2.4 5.3E-05 29.8 3.4 64 176-241 2-66 (68)
223 smart00596 PRE_C2HC PRE_C2HC d 79.3 2.8 6.1E-05 29.3 3.3 64 176-241 2-66 (69)
224 KOG4574|consensus 77.9 1 2.2E-05 46.6 1.1 71 161-237 298-371 (1007)
225 PF07530 PRE_C2HC: Associated 77.0 4 8.7E-05 28.7 3.6 63 264-328 2-65 (68)
226 PF10567 Nab6_mRNP_bdg: RNA-re 76.9 4.9 0.00011 36.5 5.0 79 248-326 14-106 (309)
227 PF03880 DbpA: DbpA RNA bindin 75.2 7.9 0.00017 27.6 4.9 57 171-236 11-73 (74)
228 COG5193 LHP1 La protein, small 74.0 1.6 3.4E-05 41.3 1.2 63 159-221 172-244 (438)
229 PF15513 DUF4651: Domain of un 71.8 9.4 0.0002 26.1 4.2 18 264-281 9-26 (62)
230 KOG4365|consensus 71.1 0.99 2.2E-05 43.0 -0.8 78 250-327 4-81 (572)
231 KOG4410|consensus 67.3 6.8 0.00015 35.4 3.6 46 251-301 332-377 (396)
232 PF14026 DUF4242: Protein of u 67.1 45 0.00097 24.0 8.2 62 252-315 3-71 (77)
233 KOG4483|consensus 65.5 20 0.00043 34.1 6.3 63 247-316 389-452 (528)
234 KOG3424|consensus 64.8 14 0.00029 28.8 4.3 48 260-308 34-86 (132)
235 PRK01178 rps24e 30S ribosomal 64.8 20 0.00043 27.3 5.2 48 260-308 30-82 (99)
236 smart00596 PRE_C2HC PRE_C2HC d 63.6 10 0.00022 26.6 3.1 62 264-327 2-64 (69)
237 KOG4019|consensus 62.5 6.9 0.00015 33.0 2.6 74 250-329 11-91 (193)
238 KOG4213|consensus 60.1 5.1 0.00011 33.6 1.4 72 248-324 110-183 (205)
239 PF07292 NID: Nmi/IFP 35 domai 57.5 16 0.00035 27.1 3.5 32 294-325 1-34 (88)
240 KOG2854|consensus 55.5 20 0.00044 33.4 4.6 143 160-312 80-233 (343)
241 PF15513 DUF4651: Domain of un 54.8 32 0.00069 23.6 4.3 20 176-195 9-28 (62)
242 TIGR03636 L23_arch archaeal ri 54.7 69 0.0015 23.1 6.3 55 252-309 16-73 (77)
243 KOG2891|consensus 54.4 12 0.00026 33.7 2.8 35 160-194 148-194 (445)
244 PRK14548 50S ribosomal protein 53.3 71 0.0015 23.5 6.3 52 252-306 23-76 (84)
245 PTZ00071 40S ribosomal protein 52.0 37 0.0008 27.3 5.0 48 260-308 35-88 (132)
246 PF00403 HMA: Heavy-metal-asso 51.3 66 0.0014 21.5 5.7 55 251-311 1-59 (62)
247 KOG2295|consensus 50.5 3.6 7.8E-05 40.6 -1.1 73 248-320 230-303 (648)
248 KOG4368|consensus 50.3 36 0.00078 34.2 5.5 12 291-302 679-690 (757)
249 KOG4213|consensus 50.2 18 0.00038 30.5 3.0 63 160-228 110-175 (205)
250 COG5193 LHP1 La protein, small 49.9 9 0.0002 36.4 1.4 61 248-308 173-243 (438)
251 PF03468 XS: XS domain; Inter 49.4 17 0.00037 28.5 2.8 46 173-221 29-75 (116)
252 KOG2295|consensus 44.1 5.1 0.00011 39.6 -1.1 69 159-227 229-298 (648)
253 COG5353 Uncharacterized protei 41.4 1.5E+02 0.0032 24.3 6.8 58 160-217 86-156 (161)
254 COG5353 Uncharacterized protei 41.4 1E+02 0.0023 25.2 6.0 53 250-302 88-153 (161)
255 cd00874 RNA_Cyclase_Class_II R 41.2 1.3E+02 0.0029 28.3 7.8 118 162-299 110-238 (326)
256 PF13388 DUF4106: Protein of u 40.9 87 0.0019 28.7 6.1 10 202-211 324-333 (422)
257 KOG3424|consensus 40.1 88 0.0019 24.5 5.2 47 172-219 34-85 (132)
258 TIGR03636 L23_arch archaeal ri 38.8 1.4E+02 0.003 21.5 5.8 54 163-219 15-70 (77)
259 PRK14548 50S ribosomal protein 38.2 1.4E+02 0.0029 22.0 5.8 55 163-220 22-78 (84)
260 PF01282 Ribosomal_S24e: Ribos 35.9 1.7E+02 0.0037 21.4 6.1 48 259-307 11-63 (84)
261 PF14893 PNMA: PNMA 35.5 29 0.00062 32.8 2.4 54 160-215 17-74 (331)
262 COG2004 RPS24A Ribosomal prote 35.5 1.2E+02 0.0025 23.5 5.2 49 259-308 30-83 (107)
263 PF02714 DUF221: Domain of unk 34.5 54 0.0012 30.7 4.2 57 206-272 1-57 (325)
264 PF11411 DNA_ligase_IV: DNA li 34.0 33 0.00072 20.7 1.6 17 171-187 19-35 (36)
265 TIGR03399 RNA_3prim_cycl RNA 3 33.1 3.5E+02 0.0076 25.6 9.2 119 162-299 112-240 (326)
266 cd04908 ACT_Bt0572_1 N-termina 32.5 1.6E+02 0.0035 19.9 7.3 49 263-315 15-64 (66)
267 KOG4008|consensus 32.3 37 0.00081 30.0 2.4 35 157-191 36-70 (261)
268 KOG2671|consensus 32.1 1.1E+02 0.0023 29.2 5.4 45 172-221 13-58 (421)
269 PF13388 DUF4106: Protein of u 31.3 1.9E+02 0.0041 26.6 6.6 12 176-187 266-277 (422)
270 PF09707 Cas_Cas2CT1978: CRISP 30.2 1.1E+02 0.0024 22.6 4.2 50 160-212 24-73 (86)
271 COG5638 Uncharacterized conser 29.9 3.9E+02 0.0085 25.9 8.7 39 158-196 143-186 (622)
272 PRK12280 rplW 50S ribosomal pr 29.9 1.5E+02 0.0032 24.8 5.4 34 251-284 23-58 (158)
273 CHL00030 rpl23 ribosomal prote 29.6 1.6E+02 0.0034 22.2 5.0 33 252-284 21-55 (93)
274 PF14893 PNMA: PNMA 29.5 48 0.0011 31.3 2.8 52 247-300 16-71 (331)
275 PRK04204 RNA 3'-terminal-phosp 29.3 5.1E+02 0.011 24.7 10.0 117 162-298 114-242 (343)
276 KOG4008|consensus 29.0 49 0.0011 29.3 2.6 34 246-279 37-70 (261)
277 PRK10263 DNA translocase FtsK; 28.8 1.5E+02 0.0032 33.5 6.6 6 319-324 1240-1245(1355)
278 COG2608 CopZ Copper chaperone 28.7 1.5E+02 0.0033 20.7 4.7 45 250-300 4-48 (71)
279 PF10281 Ish1: Putative stress 28.6 58 0.0013 19.7 2.2 18 260-277 3-20 (38)
280 KOG0862|consensus 28.3 80 0.0017 27.6 3.7 35 264-306 89-125 (216)
281 PF03439 Spt5-NGN: Early trans 28.2 99 0.0021 22.6 3.8 30 187-221 33-62 (84)
282 PF07876 Dabb: Stress responsi 27.9 2.4E+02 0.0053 20.6 6.8 56 253-308 5-71 (97)
283 PF14111 DUF4283: Domain of un 27.7 23 0.00051 28.9 0.4 62 260-329 28-93 (153)
284 PRK11558 putative ssRNA endonu 27.4 1E+02 0.0022 23.4 3.6 51 160-213 26-76 (97)
285 PRK11901 hypothetical protein; 27.1 1.3E+02 0.0028 28.2 5.0 46 262-309 255-302 (327)
286 PF04026 SpoVG: SpoVG; InterP 26.8 1.2E+02 0.0025 22.3 3.9 26 187-212 2-27 (84)
287 COG4260 Membrane protease subu 26.7 70 0.0015 29.2 3.2 33 293-325 215-249 (345)
288 PF12091 DUF3567: Protein of u 26.1 1.3E+02 0.0029 22.1 3.9 58 202-276 7-77 (85)
289 PF04026 SpoVG: SpoVG; InterP 25.2 1.3E+02 0.0028 22.1 3.9 26 275-300 2-27 (84)
290 KOG0156|consensus 24.6 1.4E+02 0.003 30.0 5.3 62 250-320 33-97 (489)
291 PF00276 Ribosomal_L23: Riboso 24.5 93 0.002 23.2 3.1 50 252-301 22-83 (91)
292 KOG0156|consensus 23.9 1.4E+02 0.003 30.1 5.1 62 162-232 33-97 (489)
293 PRK13259 regulatory protein Sp 23.7 1.4E+02 0.003 22.5 3.8 26 275-300 2-27 (94)
294 COG5178 PRP8 U5 snRNP spliceos 23.3 63 0.0014 35.5 2.6 24 163-186 74-97 (2365)
295 PRK13259 regulatory protein Sp 23.2 1.4E+02 0.0029 22.5 3.6 26 187-212 2-27 (94)
296 KOG1295|consensus 21.6 1.1E+02 0.0023 29.3 3.5 67 160-226 6-76 (376)
297 PF11215 DUF3010: Protein of u 21.4 1.8E+02 0.004 23.6 4.3 42 257-299 37-84 (138)
298 PF11179 DUF2967: Protein of u 21.3 19 0.00041 30.4 -1.3 20 154-173 237-256 (258)
299 PRK10263 DNA translocase FtsK; 20.8 1.9E+02 0.004 32.8 5.6 8 179-186 895-902 (1355)
300 KOG1151|consensus 20.6 1.5E+02 0.0032 29.3 4.3 13 252-264 493-505 (775)
301 COG5470 Uncharacterized conser 20.6 2.6E+02 0.0057 21.0 4.6 45 264-308 23-70 (96)
302 KOG1177|consensus 20.5 6.2E+02 0.013 25.5 8.4 84 171-272 492-587 (596)
303 KOG4365|consensus 20.2 29 0.00063 33.5 -0.5 75 162-237 4-79 (572)
304 cd00875 RNA_Cyclase_Class_I RN 20.1 5.1E+02 0.011 24.7 7.8 114 168-299 119-244 (341)
305 cd04883 ACT_AcuB C-terminal AC 20.1 2.9E+02 0.0063 18.7 5.7 49 174-224 14-65 (72)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.9e-35 Score=275.57 Aligned_cols=174 Identities=18% Similarity=0.364 Sum_probs=155.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
......++|||+|||.++||++|+++|+.||.|++|+|++|+.+++++|||||+|.++++|++||+ +++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 445578999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred CCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCc
Q psy6490 235 KHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFH 313 (398)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~ 313 (398)
.++.+... ....++|||+|||.++||++|+++|++||.|++|+|++|+.++++||||||+|++.++|++|+ +||+.
T Consensus 182 ~~a~p~~~---~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 182 SYARPGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred eccccccc---ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 98865432 234568999999999999999999999999999999999999999999999999977776555 69999
Q ss_pred eeCC--EEEEEEecCchHHHh
Q psy6490 314 MIKN--KKVECKKAQPKEAVQ 332 (398)
Q Consensus 314 ~i~g--~~i~v~~a~~k~~~~ 332 (398)
.|.+ +.|+|+|+..+...+
T Consensus 259 ~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 259 IPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred ccCCCceeEEEEECCcccccc
Confidence 8866 789999998765443
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=7.1e-35 Score=286.32 Aligned_cols=169 Identities=21% Similarity=0.483 Sum_probs=151.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
..++|||+||++++++++|+++|++||.|.+|++++|+.+|+++|||||+|.+.++|++|++ +++..++|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 56899999999999999999999999999999999999999999999999999999999997 89999999999998654
Q ss_pred CCCCC--------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH-HHH
Q psy6490 239 PKNRP--------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICE 309 (398)
Q Consensus 239 ~~~~~--------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a-~~~ 309 (398)
..... ......++|||+||+.++++++|+++|+.||.|++|+|.+|+.++++||||||+|++.++|.+ +.+
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 32211 112345789999999999999999999999999999999999999999999999999776655 557
Q ss_pred HCCceeCCEEEEEEecCch
Q psy6490 310 IHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 310 l~~~~i~g~~i~v~~a~~k 328 (398)
||+..|+|+.|+|.++.++
T Consensus 266 mNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred hCCCeeCCeEEEEEecCCC
Confidence 9999999999999998865
No 3
>KOG0148|consensus
Probab=100.00 E-value=3.2e-33 Score=239.20 Aligned_cols=166 Identities=28% Similarity=0.513 Sum_probs=151.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
....|||+.|..+++.++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||. |++..|++|.|+-.|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 46789999999999999999999999999999999999999999999999999999999998 99999999999999998
Q ss_pred CCCCCc-------------cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHH-HH
Q psy6490 239 PKNRPK-------------IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE-VV 304 (398)
Q Consensus 239 ~~~~~~-------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~e-aa 304 (398)
.+.... ....+++|||+||...+||++|++.|+.||.|.+|+|.+| +||+||+|++.| +|
T Consensus 141 RKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 141 RKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAA 214 (321)
T ss_pred cCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHH
Confidence 775322 2335789999999999999999999999999999999999 789999999965 56
Q ss_pred HHHHHHCCceeCCEEEEEEecCchHHH
Q psy6490 305 DHICEIHFHMIKNKKVECKKAQPKEAV 331 (398)
Q Consensus 305 ~a~~~l~~~~i~g~~i~v~~a~~k~~~ 331 (398)
+||++||+..|.|..++|.|.+.....
T Consensus 215 hAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 215 HAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred HHHHHhcCceeCceEEEEeccccCCCC
Confidence 788899999999999999998765443
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.8e-33 Score=264.91 Aligned_cols=215 Identities=25% Similarity=0.348 Sum_probs=177.6
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGA 187 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~ 187 (398)
..|++|+.+.+...+..++..+++....+..+.+..... .......++|||+|||.++++++|+++|+.||.
T Consensus 44 s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~--------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~ 115 (352)
T TIGR01661 44 SLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP--------SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ 115 (352)
T ss_pred cceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc--------cccccccceEEECCccccCCHHHHHHHHhccCC
Confidence 457899999999999999999998877776666654321 112235678999999999999999999999999
Q ss_pred EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCc--ccCCCCCCCCCCC---------------------
Q psy6490 188 VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGK--KIDPKHATPKNRP--------------------- 243 (398)
Q Consensus 188 i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~--~l~v~~~~~~~~~--------------------- 243 (398)
|..++++.+..++.++|||||+|.+.++|++|++ +++..+.|+ .|.+.++......
T Consensus 116 i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (352)
T TIGR01661 116 IITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVP 195 (352)
T ss_pred EEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCC
Confidence 9999999998889999999999999999999997 888888774 4555544321100
Q ss_pred --------------------------------------------------------------------ccCccccceeec
Q psy6490 244 --------------------------------------------------------------------KIGNRTKKIFVG 255 (398)
Q Consensus 244 --------------------------------------------------------------------~~~~~~~~l~V~ 255 (398)
.......+|||+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~ 275 (352)
T TIGR01661 196 LSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVY 275 (352)
T ss_pred ccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEe
Confidence 001112359999
Q ss_pred CCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH-HHHHCCceeCCEEEEEEecCchHH
Q psy6490 256 GVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICEIHFHMIKNKKVECKKAQPKEA 330 (398)
Q Consensus 256 nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a-~~~l~~~~i~g~~i~v~~a~~k~~ 330 (398)
|||+++++++|+++|++||.|++|+|++|..++.+||||||+|++.++|.+ +..|||..|+||.|+|.|...|..
T Consensus 276 NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 276 NLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 999999999999999999999999999999999999999999999766655 557999999999999999988764
No 5
>KOG0144|consensus
Probab=99.98 E-value=4.1e-32 Score=246.17 Aligned_cols=177 Identities=26% Similarity=0.440 Sum_probs=150.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-C-CCcccCCc--
Q psy6490 155 TGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-V-PIHTLDGK-- 230 (398)
Q Consensus 155 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~-~~~~~~g~-- 230 (398)
+..+.+.-++|||-||..++|+||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+. + |.++|-|-
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 3445678899999999999999999999999999999999999999999999999999999999998 4 55567665
Q ss_pred ccCCCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH-HH
Q psy6490 231 KIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHI-CE 309 (398)
Q Consensus 231 ~l~v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~-~~ 309 (398)
.|.|++++.+.+ .....++|||+-|+..+||.||+++|++||.|++|.|++| ..+.+||||||.|++.|.|.++ ..
T Consensus 108 pvqvk~Ad~E~e--r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 108 PVQVKYADGERE--RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred ceeecccchhhh--ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHh
Confidence 455666654433 2345788999999999999999999999999999999999 5799999999999998877655 46
Q ss_pred HCCce-eCC--EEEEEEecCchHHHhhh
Q psy6490 310 IHFHM-IKN--KKVECKKAQPKEAVQAN 334 (398)
Q Consensus 310 l~~~~-i~g--~~i~v~~a~~k~~~~~~ 334 (398)
|||.. +.| ..|.|+||+++.++..+
T Consensus 185 ~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred hccceeeccCCCceEEEecccCCCchHH
Confidence 98864 555 47999999987766543
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=2.8e-31 Score=254.17 Aligned_cols=167 Identities=23% Similarity=0.454 Sum_probs=151.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
+..+|||+|||.++++++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|++||+ +++..+.|++|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 56899999999999999999999999999999999999999999999999999999999997 89999999999999886
Q ss_pred CCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCC
Q psy6490 239 PKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKN 317 (398)
Q Consensus 239 ~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g 317 (398)
+... ....++|||+|||.++++++|+++|+.||.|..++++.+..++.++|||||+|++.++|+.++ +|||..+.|
T Consensus 82 ~~~~---~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 82 PSSD---SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred cccc---ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 5443 234568999999999999999999999999999999999888999999999999987776665 799999887
Q ss_pred --EEEEEEecCchH
Q psy6490 318 --KKVECKKAQPKE 329 (398)
Q Consensus 318 --~~i~v~~a~~k~ 329 (398)
+.|+|+|+....
T Consensus 159 ~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 159 CTEPITVKFANNPS 172 (352)
T ss_pred CceeEEEEECCCCC
Confidence 678999987655
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=6.7e-31 Score=266.08 Aligned_cols=221 Identities=27% Similarity=0.404 Sum_probs=182.9
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGA 187 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~ 187 (398)
..+++++.+.+..++..++..+++....+....+.......... .......++|||+||+.++|+++|+++|+.||+
T Consensus 128 skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~---~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~ 204 (562)
T TIGR01628 128 SRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE---AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE 204 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc---cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC
Confidence 45788999999999999998888776665555543222111111 123345688999999999999999999999999
Q ss_pred EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccC----CcccCCCCCCCCCCC---------------ccCc
Q psy6490 188 VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLD----GKKIDPKHATPKNRP---------------KIGN 247 (398)
Q Consensus 188 i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~----g~~l~v~~~~~~~~~---------------~~~~ 247 (398)
|.+++++++. +++++|||||+|.+.++|.+|++ +++..+. |+.|.|.++..+... ....
T Consensus 205 i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~ 283 (562)
T TIGR01628 205 ITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKA 283 (562)
T ss_pred EEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhccc
Confidence 9999999986 78899999999999999999998 8999998 999988877654332 1123
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
...+|||+||+.++|+++|+++|++||.|++|+|++| .+|.++|||||+|.+.++|++|+ +|||+.|+|+.|.|.|+.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4567999999999999999999999999999999999 78999999999999977665555 799999999999999999
Q ss_pred chHHHhh
Q psy6490 327 PKEAVQA 333 (398)
Q Consensus 327 ~k~~~~~ 333 (398)
.|+.+..
T Consensus 363 ~k~~~~~ 369 (562)
T TIGR01628 363 RKEQRRA 369 (562)
T ss_pred CcHHHHH
Confidence 9887754
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.6e-30 Score=257.40 Aligned_cols=170 Identities=25% Similarity=0.425 Sum_probs=152.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
+...++|||+|||.++++++|+++|++||.|.+|++++|+.+++++|||||+|.+.++|.+||.+++..+.|+.|.|...
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCC---------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q psy6490 238 TPKNRP---------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 238 ~~~~~~---------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
...... ......++|||+||+..+|+++|+++|+.||.|.+|.|+++..+|.++|||||+|.+.++|..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 432211 11123578999999999999999999999999999999999999999999999999988776665
Q ss_pred -HHCCceeCCEEEEEEecCc
Q psy6490 309 -EIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 309 -~l~~~~i~g~~i~v~~a~~ 327 (398)
.|||..|.|+.|+|.|+..
T Consensus 246 ~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 246 EVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HhcCCcEECCEEEEEEEccC
Confidence 6999999999999999764
No 9
>KOG0145|consensus
Probab=99.97 E-value=2.7e-30 Score=219.87 Aligned_cols=213 Identities=26% Similarity=0.353 Sum_probs=183.2
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGA 187 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~ 187 (398)
.-||+|.+..++..+..+++.+|+.+...+.+.+.-. +++.+......|||.+||..+|..||+.+|+.||.
T Consensus 82 SLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA--------RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr 153 (360)
T KOG0145|consen 82 SLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA--------RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR 153 (360)
T ss_pred ccccceeeecChHHHHHHHhhhcceeeccceEEEEec--------cCChhhhcccceEEecCCccchHHHHHHHHHHhhh
Confidence 4589999999999999999999999988877777432 23344557789999999999999999999999999
Q ss_pred EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCc--ccCCCCCCCCCCC---------------------
Q psy6490 188 VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGK--KIDPKHATPKNRP--------------------- 243 (398)
Q Consensus 188 i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~--~l~v~~~~~~~~~--------------------- 243 (398)
|..-+|..|..+|.+||.+||.|...++|++||+ +|+..-.|. .|.|+.+......
T Consensus 154 IItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~ 233 (360)
T KOG0145|consen 154 IITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPM 233 (360)
T ss_pred hhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcc
Confidence 9999999999999999999999999999999998 788776554 4666655442110
Q ss_pred ---------------------------------------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeec
Q psy6490 244 ---------------------------------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMD 284 (398)
Q Consensus 244 ---------------------------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~ 284 (398)
.......+|||-||..+.+|.-|+++|..||.|.+|+|++|
T Consensus 234 hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD 313 (360)
T KOG0145|consen 234 HHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRD 313 (360)
T ss_pred cchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEec
Confidence 00112458999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCC-HHHHHHHHHHCCceeCCEEEEEEecCch
Q psy6490 285 QQTKRHRGFGFVTFEN-EEVVDHICEIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 285 ~~~~~~kg~afV~F~~-~eaa~a~~~l~~~~i~g~~i~v~~a~~k 328 (398)
..++++|||+||.+.+ .|+|.++..|||..+++|.|.|.|...|
T Consensus 314 ~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 314 FTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999 7788999999999999999999997655
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=7.6e-30 Score=258.39 Aligned_cols=217 Identities=21% Similarity=0.347 Sum_probs=183.8
Q ss_pred CCCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCC
Q psy6490 107 GDSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFG 186 (398)
Q Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G 186 (398)
...+++++.+.+...+..++..++.....+..+.+.+....... .....++|||+||+.++++++|+++|++||
T Consensus 40 ~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G 113 (562)
T TIGR01628 40 RSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSL------RRSGVGNIFVKNLDKSVDNKALFDTFSKFG 113 (562)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccc------cccCCCceEEcCCCccCCHHHHHHHHHhcC
Confidence 34578999999999999999988887777777777664322111 112457899999999999999999999999
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCCCCc--cCccccceeecCCCCCCCH
Q psy6490 187 AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRPK--IGNRTKKIFVGGVSQDTSA 263 (398)
Q Consensus 187 ~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~~~~--~~~~~~~l~V~nLp~~~te 263 (398)
.|++|++..+. +|+++|||||+|.+.++|++|++ +++..++|+.|.+.....+.... .....++|||+||+.++|+
T Consensus 114 ~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~te 192 (562)
T TIGR01628 114 NILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNE 192 (562)
T ss_pred CcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCH
Confidence 99999999886 78899999999999999999997 89999999999887655443332 3445678999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC----CEEEEEEecCchHHH
Q psy6490 264 EEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK----NKKVECKKAQPKEAV 331 (398)
Q Consensus 264 e~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~----g~~i~v~~a~~k~~~ 331 (398)
++|+++|++||.|.+++++++ .+++++|||||+|++.++|..++ +++|..|+ |+.|.|.++..+.++
T Consensus 193 e~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 193 DKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred HHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhh
Confidence 999999999999999999988 47899999999999977776555 79999999 999999999887766
No 11
>KOG0145|consensus
Probab=99.96 E-value=2.4e-29 Score=214.13 Aligned_cols=170 Identities=26% Similarity=0.475 Sum_probs=154.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.++..+.|.|..||..+|+|||+.+|...|+|++|++++|+.+|.+.||+||.|.+++||++|+. +|+..+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 44577899999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred CCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHCCce
Q psy6490 236 HATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN-EEVVDHICEIHFHM 314 (398)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~-~eaa~a~~~l~~~~ 314 (398)
++++... .-+...|||.+||..+|..||.++|+.||.|...+|+.|.-+|.+||.+||+|+. .|+-++++.|||..
T Consensus 117 yARPSs~---~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 117 YARPSSD---SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred eccCChh---hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 9987765 3345679999999999999999999999999999999999999999999999998 55667777899998
Q ss_pred eCCE--EEEEEecCchH
Q psy6490 315 IKNK--KVECKKAQPKE 329 (398)
Q Consensus 315 i~g~--~i~v~~a~~k~ 329 (398)
-.|. .|.|+|+....
T Consensus 194 P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPS 210 (360)
T ss_pred CCCCCCCeEEEecCCcc
Confidence 7664 69999997653
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=3e-28 Score=239.43 Aligned_cols=162 Identities=23% Similarity=0.442 Sum_probs=134.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccC-CcccCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLD-GKKIDPKHA 237 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~-g~~l~v~~~ 237 (398)
..++|||+|||.+++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||+ +++..+. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 5689999999999999999999999999999999999 699999999999999999999998 7776664 555543322
Q ss_pred CCC----------------------------------------CCC----------------------------------
Q psy6490 238 TPK----------------------------------------NRP---------------------------------- 243 (398)
Q Consensus 238 ~~~----------------------------------------~~~---------------------------------- 243 (398)
... ...
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 110 000
Q ss_pred ------------ccCccccceeecCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-
Q psy6490 244 ------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQF--GKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC- 308 (398)
Q Consensus 244 ------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~--G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~- 308 (398)
......++|||+||++++|+|+|+++|++| |.|++|+++ ++||||+|++.++|++++
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHH
Confidence 000123579999999999999999999999 999999876 359999999987776665
Q ss_pred HHCCceeCCEEEEEEecCchHH
Q psy6490 309 EIHFHMIKNKKVECKKAQPKEA 330 (398)
Q Consensus 309 ~l~~~~i~g~~i~v~~a~~k~~ 330 (398)
+||+..|+|+.|+|+|+++++.
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCc
Confidence 6999999999999999988654
No 13
>KOG0117|consensus
Probab=99.96 E-value=4.8e-29 Score=227.35 Aligned_cols=168 Identities=24% Similarity=0.454 Sum_probs=141.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCccc-CCcccCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTL-DGKKIDPKH 236 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~-~g~~l~v~~ 236 (398)
...+.||||.||.++.|++|..+|++.|+|-+++|+.|+.+|.+||||||.|.+.++|++|++ +|+.+| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 467999999999999999999999999999999999999999999999999999999999998 777765 566665544
Q ss_pred CCCCCCC-------------------------------------------------------------------------
Q psy6490 237 ATPKNRP------------------------------------------------------------------------- 243 (398)
Q Consensus 237 ~~~~~~~------------------------------------------------------------------------- 243 (398)
+..+.+.
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 3321110
Q ss_pred -------------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHH-HHHHHHH
Q psy6490 244 -------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE-VVDHICE 309 (398)
Q Consensus 244 -------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~e-aa~a~~~ 309 (398)
.....-+.|||+||+.++|||.|+++|+.||.|++|+.++| ||||.|.+.+ +.+|+.+
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 00012236999999999999999999999999999999877 9999999955 5566778
Q ss_pred HCCceeCCEEEEEEecCchHHHhhh
Q psy6490 310 IHFHMIKNKKVECKKAQPKEAVQAN 334 (398)
Q Consensus 310 l~~~~i~g~~i~v~~a~~k~~~~~~ 334 (398)
+||+.|+|..|.|.+|++-.+++..
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred hcCceecCceEEEEecCChhhhccc
Confidence 9999999999999999997766554
No 14
>KOG0131|consensus
Probab=99.96 E-value=2.1e-29 Score=203.87 Aligned_cols=170 Identities=27% Similarity=0.436 Sum_probs=153.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
...+||||||+..++++.|.++|-..|+|+++++.+|+.+...+|||||+|.++|+|+-|++ ++...|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 67899999999999999999999999999999999999999999999999999999999999 78888999999999887
Q ss_pred CCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC
Q psy6490 239 PKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEE-TVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK 316 (398)
Q Consensus 239 ~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~-v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~ 316 (398)
..........+|||+||.++++|..|.+.|+.||.|.+ =.|++|..+|.++||+||.|.+.|++.+++ .|||..+.
T Consensus 88 --~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 88 --AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred --cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 22233445578999999999999999999999998775 368899999999999999999988887776 58999999
Q ss_pred CEEEEEEecCchHHH
Q psy6490 317 NKKVECKKAQPKEAV 331 (398)
Q Consensus 317 g~~i~v~~a~~k~~~ 331 (398)
+|.|+|.++..++..
T Consensus 166 nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTK 180 (203)
T ss_pred CCceEEEEEEecCCC
Confidence 999999999876543
No 15
>KOG0124|consensus
Probab=99.95 E-value=7.4e-28 Score=214.07 Aligned_cols=169 Identities=21% Similarity=0.485 Sum_probs=151.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
--++||||.|.+++.|+.||..|..||.|++|.+..|..|+++|||+||+|+-+|.|..|++ +|+..++||.|+|.+..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 34899999999999999999999999999999999999999999999999999999999999 99999999999998654
Q ss_pred CCCCC--------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHH-HHHHHHH
Q psy6490 239 PKNRP--------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE-VVDHICE 309 (398)
Q Consensus 239 ~~~~~--------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~e-aa~a~~~ 309 (398)
.-..- ++....++|||..++.+++|+||+..|+.||+|++|.+.++...+..|||+||+|++.. .-+++-.
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 42211 22345678999999999999999999999999999999999988999999999999954 5567778
Q ss_pred HCCceeCCEEEEEEecCch
Q psy6490 310 IHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 310 l~~~~i~g~~i~v~~a~~k 328 (398)
||-+.++|..|+|..+...
T Consensus 272 MNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred cchhhcccceEecccccCC
Confidence 9999999999999887644
No 16
>KOG0127|consensus
Probab=99.95 E-value=4.1e-27 Score=219.36 Aligned_cols=174 Identities=24% Similarity=0.416 Sum_probs=151.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
.+..+|.|+|||+.+.+.+|+.+|+.||.|.+|.|.+....+.+ |||||.|.+..+|.+||+ +|+..|+||+|-|.|+
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 34789999999999999999999999999999999987755555 999999999999999999 8999999999999887
Q ss_pred CCCCCCc-------------------------------------------------------------------------
Q psy6490 238 TPKNRPK------------------------------------------------------------------------- 244 (398)
Q Consensus 238 ~~~~~~~------------------------------------------------------------------------- 244 (398)
..++.-.
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 6532100
Q ss_pred --------------cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q psy6490 245 --------------IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310 (398)
Q Consensus 245 --------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l 310 (398)
.....++|||+|||+++|||+|.++|++||.|.++.|+.++.|++++|+|||.|.+..++..++++
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHh
Confidence 000125799999999999999999999999999999999999999999999999999988888875
Q ss_pred C------C-ceeCCEEEEEEecCchHHHhh
Q psy6490 311 H------F-HMIKNKKVECKKAQPKEAVQA 333 (398)
Q Consensus 311 ~------~-~~i~g~~i~v~~a~~k~~~~~ 333 (398)
- | ..|+||.|+|..+..+.+...
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~d 383 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAAD 383 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHH
Confidence 3 4 779999999999988775544
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=4.1e-27 Score=236.28 Aligned_cols=166 Identities=16% Similarity=0.316 Sum_probs=139.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcC------------CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMF------------GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVP 223 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~------------G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~ 223 (398)
......++|||||||.++|+++|+++|..| +.|..+.+. +.+|||||+|.+.++|..||+++
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMALD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhcCC
Confidence 334477999999999999999999999875 244444443 35899999999999999999999
Q ss_pred CcccCCcccCCCCCCCCCCC--------------------------ccCccccceeecCCCCCCCHHHHHHHHhhcCCee
Q psy6490 224 IHTLDGKKIDPKHATPKNRP--------------------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVE 277 (398)
Q Consensus 224 ~~~~~g~~l~v~~~~~~~~~--------------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~ 277 (398)
+..|.|+.|.|......... ......++|||+|||..+|+++|+++|+.||.|+
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 99999999988754322100 0122356899999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCc
Q psy6490 278 ETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 278 ~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~ 327 (398)
.+.|+++..+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.++..
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 9999999999999999999999988776665 6999999999999999864
No 18
>KOG0127|consensus
Probab=99.95 E-value=5.6e-27 Score=218.51 Aligned_cols=170 Identities=25% Similarity=0.459 Sum_probs=149.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPK 240 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~ 240 (398)
.||||++||++++.++|.++|+.+|.|..+.++.++.++.++||+||.|.-.||+++|++ .....|+|+.|+|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999998 6788899999999888765
Q ss_pred CCCcc-----------------------CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEE
Q psy6490 241 NRPKI-----------------------GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVT 297 (398)
Q Consensus 241 ~~~~~-----------------------~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~ 297 (398)
.+... .....+|.|+|||+.+.+++|+.+|+.||.|.+|.|.+....+.+ |||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEE
Confidence 44321 112557999999999999999999999999999999977655555 999999
Q ss_pred eCCH-HHHHHHHHHCCceeCCEEEEEEecCchHHHh
Q psy6490 298 FENE-EVVDHICEIHFHMIKNKKVECKKAQPKEAVQ 332 (398)
Q Consensus 298 F~~~-eaa~a~~~l~~~~i~g~~i~v~~a~~k~~~~ 332 (398)
|.+. ++.+++..+|+..|+||.|-|.||.+|..-.
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 9995 5555666799999999999999999876443
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=9.9e-27 Score=230.16 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=135.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh---CCCcccCCcccCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK---VPIHTLDGKKIDPKH 236 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~---~~~~~~~g~~l~v~~ 236 (398)
++++|||+|||.++++++|+++|+.||.|.+|+++++ ||||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999864 6899999999999999997 477889999999998
Q ss_pred CCCCCCCcc---------CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q psy6490 237 ATPKNRPKI---------GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHI 307 (398)
Q Consensus 237 ~~~~~~~~~---------~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~ 307 (398)
+..+..... .....+|||+||++.+|+++|+++|++||.|.+|.|+++.. +|+|||+|++.++|.+|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHA 150 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHH
Confidence 865431111 12234799999999999999999999999999999987642 47999999998777666
Q ss_pred H-HHCCceeCC--EEEEEEecCch
Q psy6490 308 C-EIHFHMIKN--KKVECKKAQPK 328 (398)
Q Consensus 308 ~-~l~~~~i~g--~~i~v~~a~~k 328 (398)
+ .|||..|.| +.|+|.|++.+
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HHHhcCCcccCCceEEEEEEecCC
Confidence 5 699999964 58999998763
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=3.3e-26 Score=229.69 Aligned_cols=220 Identities=14% Similarity=0.191 Sum_probs=166.7
Q ss_pred CCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCC----------C-----------CCCCCCCCCCCcEEEEc
Q psy6490 109 SGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDS----------G-----------RSTPTGDDPTSAKLFVG 167 (398)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----------~~~~~~~~~~~~~l~v~ 167 (398)
.+++|+.+.+...+..++. +++....+..+.+........ . ...........++|||+
T Consensus 223 kg~afVeF~~~e~A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 301 (509)
T TIGR01642 223 KNFAFLEFRTVEEATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIG 301 (509)
T ss_pred CCEEEEEeCCHHHHhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEe
Confidence 4688999999999998884 665544443333321111000 0 00011122356899999
Q ss_pred CCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCCCCc--
Q psy6490 168 GLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRPK-- 244 (398)
Q Consensus 168 nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~~~~-- 244 (398)
|||..+++++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|..|++ +++..|+|++|.|.++.......
T Consensus 302 nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~ 381 (509)
T TIGR01642 302 NLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATI 381 (509)
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999997 89999999999887764322110
Q ss_pred -----------------------cCccccceeecCCCCC--C--------CHHHHHHHHhhcCCeeEEEEeecC---CCC
Q psy6490 245 -----------------------IGNRTKKIFVGGVSQD--T--------SAEEVKAYFSQFGKVEETVMLMDQ---QTK 288 (398)
Q Consensus 245 -----------------------~~~~~~~l~V~nLp~~--~--------tee~L~~~F~~~G~i~~v~i~~~~---~~~ 288 (398)
....+++|+|.||... + ..++|+++|++||.|++|+|.++. .++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~ 461 (509)
T TIGR01642 382 DTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNST 461 (509)
T ss_pred cccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcC
Confidence 0124567899999542 1 236899999999999999998753 345
Q ss_pred CcceEEEEEeCCHHHHHHH-HHHCCceeCCEEEEEEecCchH
Q psy6490 289 RHRGFGFVTFENEEVVDHI-CEIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 289 ~~kg~afV~F~~~eaa~a~-~~l~~~~i~g~~i~v~~a~~k~ 329 (398)
.++|+|||+|++.++|++| ..|||..|+|+.|.|.|.....
T Consensus 462 ~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 462 PGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDC 503 (509)
T ss_pred CCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHH
Confidence 6789999999997766555 5799999999999999987544
No 21
>KOG4205|consensus
Probab=99.94 E-value=3.6e-27 Score=214.27 Aligned_cols=175 Identities=54% Similarity=0.937 Sum_probs=165.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~ 239 (398)
+.++|||++|+++++++.|++.|..||+|.+|.+++|+.+++++||+||+|.+.+.+.++|....+.|+|+.|+++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 77999999999999999999999999999999999999999999999999999999999999888999999999999988
Q ss_pred CCCCccCc---cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeC
Q psy6490 240 KNRPKIGN---RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIK 316 (398)
Q Consensus 240 ~~~~~~~~---~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~ 316 (398)
+....... ..++|||++|+.++++++++++|++||.|.++.++.|..+.+++||+||.|+++++++.++....+.|.
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~ 164 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFN 164 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeec
Confidence 77654433 467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEecCchHHHhhh
Q psy6490 317 NKKVECKKAQPKEAVQAN 334 (398)
Q Consensus 317 g~~i~v~~a~~k~~~~~~ 334 (398)
|+.|.|+.|.+|+.....
T Consensus 165 gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 165 GKKVEVKRAIPKEVMQST 182 (311)
T ss_pred CceeeEeeccchhhcccc
Confidence 999999999999987654
No 22
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=4.2e-26 Score=225.66 Aligned_cols=163 Identities=19% Similarity=0.341 Sum_probs=136.4
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 159 PTSAKLFVGGLSW-QTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 159 ~~~~~l~v~nLp~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
..+++|||+||+. .+|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++ +++..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3678999999997 69999999999999999999999874 7999999999999999998 899999999999876
Q ss_pred CCCCCCC--------------c--------------------cCccccceeecCCCCCCCHHHHHHHHhhcCC--eeEEE
Q psy6490 237 ATPKNRP--------------K--------------------IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGK--VEETV 280 (398)
Q Consensus 237 ~~~~~~~--------------~--------------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~--i~~v~ 280 (398)
+...... . ...++++|||+|||.++|+++|+++|+.||. |++|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 5432100 0 0123568999999999999999999999998 88888
Q ss_pred EeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCEE------EEEEecCch
Q psy6490 281 MLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNKK------VECKKAQPK 328 (398)
Q Consensus 281 i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~~------i~v~~a~~k 328 (398)
+..+. + ..+|+|||+|++.++| +|+..||++.|+|+. |+|.+++++
T Consensus 428 ~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 76543 2 3589999999996665 555679999999985 999998754
No 23
>KOG0109|consensus
Probab=99.94 E-value=2.4e-27 Score=205.18 Aligned_cols=151 Identities=25% Similarity=0.515 Sum_probs=138.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPK 240 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~ 240 (398)
..|||||||.++++.+|+.+|++||+|++|.|+++ ||||..++...++.||. +++.+|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999876 99999999999999998 9999999999999998877
Q ss_pred CCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHCCceeCCEE
Q psy6490 241 NRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN-EEVVDHICEIHFHMIKNKK 319 (398)
Q Consensus 241 ~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~-~eaa~a~~~l~~~~i~g~~ 319 (398)
+ ..+.+|+|+||.+.++.+||+..|++||.|.+|.|++| |+||.|+. +++.+++.+|++.++.|+.
T Consensus 75 s-----k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~ 141 (346)
T KOG0109|consen 75 S-----KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKR 141 (346)
T ss_pred C-----CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccce
Confidence 4 36788999999999999999999999999999999866 99999998 5666888899999999999
Q ss_pred EEEEecCchHHHhh
Q psy6490 320 VECKKAQPKEAVQA 333 (398)
Q Consensus 320 i~v~~a~~k~~~~~ 333 (398)
++|.++.++-....
T Consensus 142 m~vq~stsrlrtap 155 (346)
T KOG0109|consen 142 MHVQLSTSRLRTAP 155 (346)
T ss_pred eeeeeeccccccCC
Confidence 99999887654443
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=6.5e-24 Score=210.25 Aligned_cols=218 Identities=22% Similarity=0.294 Sum_probs=163.1
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCC----CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHh
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSG----RSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFG 183 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~ 183 (398)
..+++|+.+.+...+..++. +++....+..+.+......... ...........++|||+|||.++++++|+++|+
T Consensus 130 skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~ 208 (457)
T TIGR01622 130 SKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFE 208 (457)
T ss_pred cceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 45788999999998888875 5544443333333221110000 000111122478999999999999999999999
Q ss_pred cCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCCCC-------------------
Q psy6490 184 MFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRP------------------- 243 (398)
Q Consensus 184 ~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~~~------------------- 243 (398)
.||.|..|.+..+..+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|.++......
T Consensus 209 ~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (457)
T TIGR01622 209 PFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKN 288 (457)
T ss_pred hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcC
Confidence 99999999999999999999999999999999999997 8999999999998884321000
Q ss_pred --------------------------------------------------------------------ccCccccceeec
Q psy6490 244 --------------------------------------------------------------------KIGNRTKKIFVG 255 (398)
Q Consensus 244 --------------------------------------------------------------------~~~~~~~~l~V~ 255 (398)
......++|+|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 368 (457)
T TIGR01622 289 LNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLS 368 (457)
T ss_pred CCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEe
Confidence 001234678899
Q ss_pred CCCCCCC----------HHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH-HHHHCCceeCCEEEEEEe
Q psy6490 256 GVSQDTS----------AEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 256 nLp~~~t----------ee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a-~~~l~~~~i~g~~i~v~~ 324 (398)
||-...+ .+||++.|++||.|+.|.|.. ..+.|++||+|++.++|.+ +..|||.+|+||.|.|.+
T Consensus 369 n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~ 444 (457)
T TIGR01622 369 NMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAF 444 (457)
T ss_pred cCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEE
Confidence 9855443 378999999999999998853 3457999999999776655 557999999999999999
Q ss_pred cCchHH
Q psy6490 325 AQPKEA 330 (398)
Q Consensus 325 a~~k~~ 330 (398)
......
T Consensus 445 ~~~~~~ 450 (457)
T TIGR01622 445 VVNDVY 450 (457)
T ss_pred EcHHHH
Confidence 876553
No 25
>KOG0123|consensus
Probab=99.92 E-value=2.5e-24 Score=202.93 Aligned_cols=157 Identities=25% Similarity=0.448 Sum_probs=144.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPK 240 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~ 240 (398)
..|||| +++||..|.++|+.+|+|+++++.+|. | +.|||||.|.++++|++||+ +|...++|+.|++-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999998 6 99999999999999999998 8999999999999998755
Q ss_pred CCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEE
Q psy6490 241 NRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKK 319 (398)
Q Consensus 241 ~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~ 319 (398)
... |||.||+.+++.++|.++|+.||.|.+|++.+|. +| ++|| ||+|+++++|++++ ++||..+.|+.
T Consensus 76 ~~~--------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 76 PSL--------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred Cce--------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 543 9999999999999999999999999999999995 45 9999 99999998887766 68999999999
Q ss_pred EEEEecCchHHHhhhh
Q psy6490 320 VECKKAQPKEAVQANL 335 (398)
Q Consensus 320 i~v~~a~~k~~~~~~~ 335 (398)
|.|.....++++....
T Consensus 145 i~vg~~~~~~er~~~~ 160 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPL 160 (369)
T ss_pred eEEeeccchhhhcccc
Confidence 9999999988877544
No 26
>KOG0148|consensus
Probab=99.91 E-value=6.6e-24 Score=182.17 Aligned_cols=137 Identities=24% Similarity=0.466 Sum_probs=115.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~ 238 (398)
+..+||||+||+.++||+-|..||+..|.|.+++|+.| .|.|.++.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 36799999999999999999999999999999999987 12222222
Q ss_pred CCCC--CccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH-HHHHCCcee
Q psy6490 239 PKNR--PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICEIHFHMI 315 (398)
Q Consensus 239 ~~~~--~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a-~~~l~~~~i 315 (398)
.... .........|||+.|..+++.|+||+.|.+||+|.+++|++|..|+++|||+||.|-+.++|+. |..|||..|
T Consensus 50 ~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 50 APGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred CcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 2111 1112235569999999999999999999999999999999999999999999999999766655 558999999
Q ss_pred CCEEEEEEecCchH
Q psy6490 316 KNKKVECKKAQPKE 329 (398)
Q Consensus 316 ~g~~i~v~~a~~k~ 329 (398)
++|.|+-.||..|.
T Consensus 130 G~R~IRTNWATRKp 143 (321)
T KOG0148|consen 130 GRRTIRTNWATRKP 143 (321)
T ss_pred ccceeeccccccCc
Confidence 99999999998876
No 27
>KOG0123|consensus
Probab=99.90 E-value=2.2e-23 Score=196.54 Aligned_cols=211 Identities=23% Similarity=0.382 Sum_probs=181.0
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGA 187 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~ 187 (398)
.-+++..++.++..+..++..+|.....+....+.|..... ..|||.||+.+++.++|.++|+.||.
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-------------~~~~i~nl~~~~~~~~~~d~f~~~g~ 102 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-------------SLVFIKNLDESIDNKSLYDTFSEFGN 102 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-------------ceeeecCCCcccCcHHHHHHHHhhcC
Confidence 77899999999999999999999988888777776654322 22999999999999999999999999
Q ss_pred EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCCCCc-----cCccccceeecCCCCCC
Q psy6490 188 VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRPK-----IGNRTKKIFVGGVSQDT 261 (398)
Q Consensus 188 i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~~~~-----~~~~~~~l~V~nLp~~~ 261 (398)
|++|++..|+ +| ++|| ||+|+++++|++|++ +|+..++|++|.|.....+.... .......++|.|++.++
T Consensus 103 ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~ 179 (369)
T KOG0123|consen 103 ILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDS 179 (369)
T ss_pred eeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheecccccc
Confidence 9999999997 44 9999 999999999999998 89999999999987766544322 22345679999999999
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH-HHHHCCceeCCEEEEEEecCchHHHhhhh
Q psy6490 262 SAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICEIHFHMIKNKKVECKKAQPKEAVQANL 335 (398)
Q Consensus 262 tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a-~~~l~~~~i~g~~i~v~~a~~k~~~~~~~ 335 (398)
++++|+++|..||.|..+.++.+. .++++||+||.|++.++|+. +..||+..++|..+.|..+..+.++....
T Consensus 180 ~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l 253 (369)
T KOG0123|consen 180 TDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAEL 253 (369)
T ss_pred chHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHH
Confidence 999999999999999999999984 66799999999999776655 45799999999999999998866655443
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.90 E-value=2.5e-22 Score=197.97 Aligned_cols=133 Identities=14% Similarity=0.279 Sum_probs=107.5
Q ss_pred CCCCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCC---CCCCCCCCCcEEEEcCCCCCCCHHHHHHHH
Q psy6490 106 SGDSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRS---TPTGDDPTSAKLFVGGLSWQTSSEKLREYF 182 (398)
Q Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f 182 (398)
....|++|..+.+...+..++..+++....+..+.+........... .........++|||+||+.++++++|+++|
T Consensus 146 gkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lF 225 (612)
T TIGR01645 146 GKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF 225 (612)
T ss_pred CCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHH
Confidence 34568999999999999999999888777666666653322111110 011122355899999999999999999999
Q ss_pred hcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 183 GMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 183 ~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
+.||.|+++++.+|+.++++||||||+|.+.++|.+|++ +|+..++|+.|+|.++.
T Consensus 226 s~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 226 EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred hhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 999999999999999999999999999999999999998 89999999999876543
No 29
>KOG0146|consensus
Probab=99.88 E-value=2.6e-23 Score=178.01 Aligned_cols=172 Identities=23% Similarity=0.447 Sum_probs=144.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcc-cCC--cccCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHT-LDG--KKIDPK 235 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~-~~g--~~l~v~ 235 (398)
++++||||.|...-+|||++.+|..||.|.+|.+.+.. +|.+||++||.|.+..+|..||. +++.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67999999999999999999999999999999999886 78899999999999999999997 54432 332 234444
Q ss_pred CCCCCCCC------------------------------------------------------------------------
Q psy6490 236 HATPKNRP------------------------------------------------------------------------ 243 (398)
Q Consensus 236 ~~~~~~~~------------------------------------------------------------------------ 243 (398)
+++..+++
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 44331100
Q ss_pred --------------------------------------------------------------------------------
Q psy6490 244 -------------------------------------------------------------------------------- 243 (398)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (398)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred -----------------------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC
Q psy6490 244 -----------------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN 300 (398)
Q Consensus 244 -----------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~ 300 (398)
.+..+.+.|||-.||.+..+.||..+|-.||.|.+.+++.|+.|+.||+|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 011145689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHCCceeCCEEEEEEecCchHHHh
Q psy6490 301 EEVVDHIC-EIHFHMIKNKKVECKKAQPKEAVQ 332 (398)
Q Consensus 301 ~eaa~a~~-~l~~~~i~g~~i~v~~a~~k~~~~ 332 (398)
..++.+++ .|||+.|+-++|+|.+.++|+..+
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 87777655 799999999999999999987543
No 30
>KOG0110|consensus
Probab=99.88 E-value=1.1e-22 Score=196.07 Aligned_cols=170 Identities=28% Similarity=0.467 Sum_probs=144.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCC---CCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPIT---QRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~---~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
++|||.||++++|.++|..+|..+|.|.++.|...+.. -.|.|||||+|.+.++|..|++ ++++.|+|+.|.++.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 33999999999999999999999999999988765422 2367999999999999999999 7889999999999888
Q ss_pred CCC------CCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHH
Q psy6490 238 TPK------NRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEI 310 (398)
Q Consensus 238 ~~~------~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l 310 (398)
..+ .........++|+|+|||+..+..+|+++|..||.|++|+|.+....+.++|||||+|-+.+.| .|...|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 721 1122233357899999999999999999999999999999988766677899999999996555 555578
Q ss_pred CCceeCCEEEEEEecCchHHH
Q psy6490 311 HFHMIKNKKVECKKAQPKEAV 331 (398)
Q Consensus 311 ~~~~i~g~~i~v~~a~~k~~~ 331 (398)
..+.|.||+|.+.|+......
T Consensus 676 ~STHlyGRrLVLEwA~~d~~~ 696 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNTM 696 (725)
T ss_pred cccceechhhheehhccchHH
Confidence 899999999999999887653
No 31
>KOG0147|consensus
Probab=99.88 E-value=2.3e-23 Score=195.54 Aligned_cols=177 Identities=20% Similarity=0.431 Sum_probs=154.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~ 235 (398)
.++.+.++||+--|...++..+|.+||+.+|.|.+|+++.|+.++.++|.+||+|.+.+++-.||.+.+..+.|..|.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCC-----------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH
Q psy6490 236 HATPKNRP-----------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV 304 (398)
Q Consensus 236 ~~~~~~~~-----------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa 304 (398)
........ ....+..+|||+||++.+++++|+.+|+.||.|+.|.+.+|.++|.+|||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 65432211 1112233499999999999999999999999999999999999999999999999999888
Q ss_pred HHHH-HHCCceeCCEEEEEEecCchHHHh
Q psy6490 305 DHIC-EIHFHMIKNKKVECKKAQPKEAVQ 332 (398)
Q Consensus 305 ~a~~-~l~~~~i~g~~i~v~~a~~k~~~~ 332 (398)
++++ .|||..|.||.|+|.....+....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecccc
Confidence 8775 699999999999998876554443
No 32
>KOG0144|consensus
Probab=99.87 E-value=2.2e-22 Score=183.18 Aligned_cols=169 Identities=28% Similarity=0.476 Sum_probs=143.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCc-ccCCc--ccCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIH-TLDGK--KIDPK 235 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~-~~~g~--~l~v~ 235 (398)
+.++||||.|+..+||.||+++|++||.|++|.|.+|. .+.+|||+||.|.+.|-|..||+ +|+. ++.|. .|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 57899999999999999999999999999999999997 78999999999999999999998 6554 36665 56777
Q ss_pred CCCCCCCCcc----------------------------------------------------------------------
Q psy6490 236 HATPKNRPKI---------------------------------------------------------------------- 245 (398)
Q Consensus 236 ~~~~~~~~~~---------------------------------------------------------------------- 245 (398)
+++.++.+..
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 7665221100
Q ss_pred --------------------------------------------------------------------------------
Q psy6490 246 -------------------------------------------------------------------------------- 245 (398)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (398)
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence
Q ss_pred -----------------------------------------------------------CccccceeecCCCCCCCHHHH
Q psy6490 246 -----------------------------------------------------------GNRTKKIFVGGVSQDTSAEEV 266 (398)
Q Consensus 246 -----------------------------------------------------------~~~~~~l~V~nLp~~~tee~L 266 (398)
......|||.+||.+.-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 001225999999999999999
Q ss_pred HHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHH-HHHHHHHHCCceeCCEEEEEEecCchH
Q psy6490 267 KAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE-VVDHICEIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 267 ~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~e-aa~a~~~l~~~~i~g~~i~v~~a~~k~ 329 (398)
...|..||.|++.++..|+.|+.+|.|+||.|++.- +-.++..|||..|+.++++|...+.+.
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 999999999999999999999999999999999955 556677899999999999999876653
No 33
>KOG4211|consensus
Probab=99.85 E-value=2e-20 Score=173.69 Aligned_cols=173 Identities=20% Similarity=0.344 Sum_probs=145.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~ 238 (398)
.....|-+++||+++|++||++||+.| .|.++.+.++ +|+..|-|||+|.++|++++|+|.+...+..|.|+|-.+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 366889999999999999999999999 4888777665 7999999999999999999999999999999999887665
Q ss_pred CCCCC--------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q psy6490 239 PKNRP--------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310 (398)
Q Consensus 239 ~~~~~--------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l 310 (398)
..... ........|.+++||+.||++||.+||+..-.|....++.....+++.|.|||.|++.|.++.++..
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH
Confidence 43322 2223566899999999999999999999876665534344445788999999999999999999999
Q ss_pred CCceeCCEEEEEEecCchHHHhhh
Q psy6490 311 HFHMIKNKKVECKKAQPKEAVQAN 334 (398)
Q Consensus 311 ~~~~i~g~~i~v~~a~~k~~~~~~ 334 (398)
|...|+-|.|.|-.+.-.+.+...
T Consensus 165 hre~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 165 HRENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred HHHhhccceEEeehhHHHHHHhhc
Confidence 999999999999998776665543
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=4.1e-19 Score=146.21 Aligned_cols=86 Identities=27% Similarity=0.546 Sum_probs=78.9
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+||++++||++|+++|++||.|++|+|++|..+++++|||||+|++.++|++|+ +||+..|+|+.|+|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 456778999999999999999999999999999999999999999999999999988887776 5999999999999999
Q ss_pred cCchHHH
Q psy6490 325 AQPKEAV 331 (398)
Q Consensus 325 a~~k~~~ 331 (398)
+..+...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9876554
No 35
>KOG0105|consensus
Probab=99.79 E-value=1.6e-18 Score=141.03 Aligned_cols=147 Identities=17% Similarity=0.335 Sum_probs=121.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
.+++|||+|||.++.+.+|.++|.+||.|.+|.+.... ....||||+|++..+|+.||. .++..++|..|+|+...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 57899999999999999999999999999999987653 246799999999999999998 78899999999998776
Q ss_pred CCCCC-----------------------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEE
Q psy6490 239 PKNRP-----------------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGF 295 (398)
Q Consensus 239 ~~~~~-----------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~af 295 (398)
..... .......+|.|++||.+-++.||++++.+-|.|....+.+| |++.
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~Gv 154 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGV 154 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------ccee
Confidence 53211 11123457999999999999999999999999998888777 3889
Q ss_pred EEeCCHHHHHH-HHHHCCceeC
Q psy6490 296 VTFENEEVVDH-ICEIHFHMIK 316 (398)
Q Consensus 296 V~F~~~eaa~a-~~~l~~~~i~ 316 (398)
|+|.+.|+.+- +.+|....+.
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeehhhHHHHHHhhcccccc
Confidence 99999776654 4567665553
No 36
>KOG4206|consensus
Probab=99.76 E-value=1.8e-17 Score=140.31 Aligned_cols=159 Identities=19% Similarity=0.382 Sum_probs=134.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHH----HHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLRE----YFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~----~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
+..||||.||+..+..++|++ +|+.||+|++|...+ +.+.+|-|||.|.+.+.|-.|++ +++.-+.|+.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 455999999999999999988 999999999998876 56789999999999999999998 8999999999999
Q ss_pred CCCCCCCCC-----------------------------------------------ccCccccceeecCCCCCCCHHHHH
Q psy6490 235 KHATPKNRP-----------------------------------------------KIGNRTKKIFVGGVSQDTSAEEVK 267 (398)
Q Consensus 235 ~~~~~~~~~-----------------------------------------------~~~~~~~~l~V~nLp~~~tee~L~ 267 (398)
.++..+... ........+|+.|||.+++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 887653211 002345679999999999999999
Q ss_pred HHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC-CEEEEEEecC
Q psy6490 268 AYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK-NKKVECKKAQ 326 (398)
Q Consensus 268 ~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~-g~~i~v~~a~ 326 (398)
.+|+.|...++|+++... ++.|||+|.++..+..+. .+.+..|- ...+.|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999987653 679999999977776666 57888776 7788887764
No 37
>KOG0147|consensus
Probab=99.76 E-value=2.3e-18 Score=162.09 Aligned_cols=163 Identities=25% Similarity=0.388 Sum_probs=129.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCC
Q psy6490 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 161 ~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~ 239 (398)
-..||||||.+++++++|+.+|+.||.|..|.+.+|..||.+||||||+|.+.++|++|++ +|+..|-|+.|.|.....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 3449999999999999999999999999999999999999999999999999999999977 999999999987654322
Q ss_pred CCCCc---------------------------------------------------------------------cC----
Q psy6490 240 KNRPK---------------------------------------------------------------------IG---- 246 (398)
Q Consensus 240 ~~~~~---------------------------------------------------------------------~~---- 246 (398)
+.... ..
T Consensus 358 r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p 437 (549)
T KOG0147|consen 358 RVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASP 437 (549)
T ss_pred ecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccc
Confidence 11000 00
Q ss_pred ---ccccceeecCC--CCCCC--------HHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH-HHHHCC
Q psy6490 247 ---NRTKKIFVGGV--SQDTS--------AEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICEIHF 312 (398)
Q Consensus 247 ---~~~~~l~V~nL--p~~~t--------ee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a-~~~l~~ 312 (398)
..+.|+.++|+ |.+.| +|||.+.+++||.|..|.|.+. +-|+.||+|.+.++|.+ +.+|||
T Consensus 438 ~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 438 AFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred ccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhh
Confidence 12345667776 22222 3788999999999998877433 34899999999777655 558999
Q ss_pred ceeCCEEEEEEecCch
Q psy6490 313 HMIKNKKVECKKAQPK 328 (398)
Q Consensus 313 ~~i~g~~i~v~~a~~k 328 (398)
.+|.||.|+..|-...
T Consensus 513 rWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 513 RWFAGRMITAKYLPLE 528 (549)
T ss_pred hhhccceeEEEEeehh
Confidence 9999999999986543
No 38
>KOG4212|consensus
Probab=99.76 E-value=1.8e-17 Score=151.35 Aligned_cols=164 Identities=20% Similarity=0.399 Sum_probs=140.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFG-MFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~-~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
..+.+||.|||+++.+.+|+++|. +.|+|+.|.+..|. +|++||+|.|+|+++|.+++|++ ++...++||.|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 557799999999999999999996 78899999999997 89999999999999999999998 8999999999988765
Q ss_pred CCCCCC------------------------------------------cc------------------------------
Q psy6490 238 TPKNRP------------------------------------------KI------------------------------ 245 (398)
Q Consensus 238 ~~~~~~------------------------------------------~~------------------------------ 245 (398)
...... ++
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 541100 00
Q ss_pred ----------CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHCCce
Q psy6490 246 ----------GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN-EEVVDHICEIHFHM 314 (398)
Q Consensus 246 ----------~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~-~eaa~a~~~l~~~~ 314 (398)
.....++||.||.+.+..+.|++.|.--|.|..|.+-.|+ .|.++|||.++|+. .|+.+++-.+++.-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 0012368999999999999999999999999999999996 46999999999988 68888888888877
Q ss_pred eCCEEEEEEec
Q psy6490 315 IKNKKVECKKA 325 (398)
Q Consensus 315 i~g~~i~v~~a 325 (398)
+.+++.+++..
T Consensus 281 ~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 281 LFDRRMTVRLD 291 (608)
T ss_pred Cccccceeecc
Confidence 78888877763
No 39
>KOG1548|consensus
Probab=99.73 E-value=1.2e-16 Score=142.25 Aligned_cols=166 Identities=18% Similarity=0.334 Sum_probs=133.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTD--------VLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDG 229 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g 229 (398)
..++.|||.|||.++|.+++.++|++||.|.. |++.++. .|+.||-|++.|...|+++.|++ +++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 35677999999999999999999999997753 7888887 59999999999999999999999 78999999
Q ss_pred cccCCCCCCCCC-----------------------------------CCccCccccceeecCCCC----CCC-------H
Q psy6490 230 KKIDPKHATPKN-----------------------------------RPKIGNRTKKIFVGGVSQ----DTS-------A 263 (398)
Q Consensus 230 ~~l~v~~~~~~~-----------------------------------~~~~~~~~~~l~V~nLp~----~~t-------e 263 (398)
+.|+|..+.-.. ........++|.|+||=. ..+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999987664311 011223456899999822 233 4
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCchH
Q psy6490 264 EEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 264 e~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k~ 329 (398)
++|++-+++||.|.+|.|. ...+.|.+-|.|.+.+.|..++ -|+|.+|+||.|.-.....+.
T Consensus 291 edl~eec~K~G~v~~vvv~----d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVY----DRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHhCCcceEEEe----ccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 6788889999999998874 3456889999999976665555 699999999999998876544
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=3.7e-17 Score=134.61 Aligned_cols=84 Identities=37% Similarity=0.662 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
..+++|||+||+.++||++|+++|++||.|.+|+++.|+.+++++|||||+|.+.++|++|++ +++..|+|+.|.|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 367899999999999999999999999999999999999999999999999999999999997 8999999999999998
Q ss_pred CCCCC
Q psy6490 238 TPKNR 242 (398)
Q Consensus 238 ~~~~~ 242 (398)
..+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 41
>KOG0124|consensus
Probab=99.71 E-value=6.4e-17 Score=144.65 Aligned_cols=219 Identities=15% Similarity=0.241 Sum_probs=164.4
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCC---CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhc
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRS---TPTGDDPTSAKLFVGGLSWQTSSEKLREYFGM 184 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~ 184 (398)
-.+..|..++-++.+.++...+|+.-..+..+.++..++-..... .-..+...-++|||..+..+++|+||+.+|+.
T Consensus 154 HKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEA 233 (544)
T KOG0124|consen 154 HKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA 233 (544)
T ss_pred ccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHh
Confidence 345677788899999999999998776666666653332221110 00122346689999999999999999999999
Q ss_pred CCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCCCC--------------------
Q psy6490 185 FGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRP-------------------- 243 (398)
Q Consensus 185 ~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~~~-------------------- 243 (398)
||+|+.|.+-++...+.+|||||++|.+..+-..|+. +|-..|+|..|+|..+......
T Consensus 234 FG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAA 313 (544)
T KOG0124|consen 234 FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAA 313 (544)
T ss_pred hcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHH
Confidence 9999999999999889999999999999999999998 7888899998887654330000
Q ss_pred --------------------------------------------------------------------------------
Q psy6490 244 -------------------------------------------------------------------------------- 243 (398)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (398)
T Consensus 314 aTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~pp 393 (544)
T KOG0124|consen 314 ATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPP 393 (544)
T ss_pred HHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCC
Confidence
Q ss_pred -----------------------------------------------ccCccccceeecCC--CCCCCH---HHHHHHHh
Q psy6490 244 -----------------------------------------------KIGNRTKKIFVGGV--SQDTSA---EEVKAYFS 271 (398)
Q Consensus 244 -----------------------------------------------~~~~~~~~l~V~nL--p~~~te---e~L~~~F~ 271 (398)
.+...++.|.++|+ |.+++| ++|++.|+
T Consensus 394 T~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECg 473 (544)
T KOG0124|consen 394 TLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECG 473 (544)
T ss_pred chhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHh
Confidence 00013445788888 666654 68999999
Q ss_pred hcCCeeEEEEeecCCCCCc----ceEEEEEeCCH-HHHHHHHHHCCceeCCEEEEEEecC
Q psy6490 272 QFGKVEETVMLMDQQTKRH----RGFGFVTFENE-EVVDHICEIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 272 ~~G~i~~v~i~~~~~~~~~----kg~afV~F~~~-eaa~a~~~l~~~~i~g~~i~v~~a~ 326 (398)
+||.|.+|.|...+.++.. ----||+|... |.-++...|+|..|+||++..+..+
T Consensus 474 KfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 474 KFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred cccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhh
Confidence 9999999998877654422 23479999985 5555566799999999999876643
No 42
>KOG0149|consensus
Probab=99.69 E-value=3.3e-17 Score=138.97 Aligned_cols=82 Identities=37% Similarity=0.710 Sum_probs=77.2
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
+..-++|||+||++++.+|+|+++|++||+|++.+|+.|+.+|+||||+||+|.|.|+|.++++--+-.|+||+..|++|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 34567899999999999999999999999999999999999999999999999999999999998899999999999987
Q ss_pred Cc
Q psy6490 326 QP 327 (398)
Q Consensus 326 ~~ 327 (398)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 65
No 43
>KOG0149|consensus
Probab=99.67 E-value=1.8e-16 Score=134.47 Aligned_cols=83 Identities=39% Similarity=0.747 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~ 238 (398)
..-++||||+|++++..++|+++|++||+|++..|+.|+.+|+|||||||+|+|.|+|.+|++.-.-.|+||+-.+..+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 36689999999999999999999999999999999999999999999999999999999999988889999999888776
Q ss_pred CCC
Q psy6490 239 PKN 241 (398)
Q Consensus 239 ~~~ 241 (398)
-..
T Consensus 90 lg~ 92 (247)
T KOG0149|consen 90 LGG 92 (247)
T ss_pred hcC
Confidence 533
No 44
>KOG0125|consensus
Probab=99.67 E-value=2e-16 Score=139.90 Aligned_cols=105 Identities=25% Similarity=0.463 Sum_probs=86.5
Q ss_pred CcccCCcccCCCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHH
Q psy6490 224 IHTLDGKKIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEV 303 (398)
Q Consensus 224 ~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~ea 303 (398)
+...+|..+....+.... ..+..++|+|+|||+...|-||+.+|++||.|.+|+|+.+. ..||||+||+|++.++
T Consensus 74 ~~~t~g~~~~~~~st~s~---s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 74 GAPTDGQPIQTQPSTNSS---SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCccccCCCCcCC---CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhh
Confidence 334566666555544333 24556789999999999999999999999999999999883 5589999999999988
Q ss_pred HHHHH-HHCCceeCCEEEEEEecCchHHHhh
Q psy6490 304 VDHIC-EIHFHMIKNKKVECKKAQPKEAVQA 333 (398)
Q Consensus 304 a~a~~-~l~~~~i~g~~i~v~~a~~k~~~~~ 333 (398)
|+++. +|||..|.||+|+|+.+..+...++
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATarV~n~K 179 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATARVHNKK 179 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchhhccCC
Confidence 88877 7999999999999999998865544
No 45
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=3.3e-16 Score=147.20 Aligned_cols=99 Identities=20% Similarity=0.328 Sum_probs=83.2
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||+++||++|+++|+.||.|++|+|++|..+++++|||||+|.++++|+.|+ +||+..|.++.|+|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 345788999999999999999999999999999999999999999999999999988777666 7999999999999999
Q ss_pred cCchHHHhhhhhcCCccccCCCCC
Q psy6490 325 AQPKEAVQANLLVGKRVILGPLGL 348 (398)
Q Consensus 325 a~~k~~~~~~~~~~~~~~~~~~~~ 348 (398)
+++.... .....++++++..
T Consensus 184 a~p~~~~----~~~~~lfV~nLp~ 203 (346)
T TIGR01659 184 ARPGGES----IKDTNLYVTNLPR 203 (346)
T ss_pred ccccccc----cccceeEEeCCCC
Confidence 8764322 1223456655543
No 46
>KOG0122|consensus
Probab=99.66 E-value=3.6e-16 Score=133.13 Aligned_cols=82 Identities=22% Similarity=0.424 Sum_probs=75.7
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHH-HHHHHHHHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE-VVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~e-aa~a~~~l~~~~i~g~~i~v~~a 325 (398)
....+|.|.||+.+++|+||+++|.+||.|.+|.|.+|++||.+||||||.|++.+ +++|+..|||.-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36678999999999999999999999999999999999999999999999999965 55666689999999999999999
Q ss_pred Cch
Q psy6490 326 QPK 328 (398)
Q Consensus 326 ~~k 328 (398)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 876
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=8.7e-16 Score=110.80 Aligned_cols=69 Identities=32% Similarity=0.689 Sum_probs=64.8
Q ss_pred eeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEE
Q psy6490 252 IFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVE 321 (398)
Q Consensus 252 l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~ 321 (398)
|||+|||.++|+++|+++|+.||.|..+.+..+ .++..+|||||+|++.++|+.+++ ++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 788999999999999888887775 999999999986
No 48
>KOG0110|consensus
Probab=99.65 E-value=1.8e-15 Score=146.58 Aligned_cols=164 Identities=22% Similarity=0.316 Sum_probs=128.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.....+.|+|+|||..+..++|.++|..||+|..+.+... ---++|+|.+..+|..|++ +....+....+.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc------cceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 3446789999999999999999999999999999955421 1249999999999999997 55555655555554
Q ss_pred CCCCCCCC-----------------------------------------------ccCccccceeecCCCCCCCHHHHHH
Q psy6490 236 HATPKNRP-----------------------------------------------KIGNRTKKIFVGGVSQDTSAEEVKA 268 (398)
Q Consensus 236 ~~~~~~~~-----------------------------------------------~~~~~~~~l~V~nLp~~~tee~L~~ 268 (398)
|+...... ......++|||+||++++|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 43221000 0000122499999999999999999
Q ss_pred HHhhcCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 269 YFSQFGKVEETVMLMDQQTK---RHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 269 ~F~~~G~i~~v~i~~~~~~~---~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
+|.++|.|.++.|.+.+... .|.|||||+|.+.++|++++ .|+|+.|+|+.|.|+++.
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999999887664332 36699999999999888877 589999999999999998
No 49
>KOG0106|consensus
Probab=99.64 E-value=2.6e-16 Score=134.82 Aligned_cols=153 Identities=20% Similarity=0.440 Sum_probs=124.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPK 240 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~ 240 (398)
..||||+|++.+.+.+|.+||..||.+.++.+. .||+||+|.+..+|..|+. +++..|.|.++.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999885 4699999999999999997 8888888888877777631
Q ss_pred C------C-----------CccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHH
Q psy6490 241 N------R-----------PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEV 303 (398)
Q Consensus 241 ~------~-----------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~ea 303 (398)
. . .......+.++|.++...+.+.+|.++|+.+|.+....+ ..+++||+|++.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 0 0 011234567899999999999999999999999965444 25699999999776
Q ss_pred HHHHH-HHCCceeCCEEEEEEecCchHH
Q psy6490 304 VDHIC-EIHFHMIKNKKVECKKAQPKEA 330 (398)
Q Consensus 304 a~a~~-~l~~~~i~g~~i~v~~a~~k~~ 330 (398)
++.++ .+++..+.|+.|++........
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~~~d~~ 173 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKNSRDRS 173 (216)
T ss_pred hhhcchhccchhhcCceeeecccCcchh
Confidence 65555 7999999999999965544433
No 50
>KOG0126|consensus
Probab=99.63 E-value=2.6e-17 Score=133.69 Aligned_cols=100 Identities=17% Similarity=0.395 Sum_probs=85.4
Q ss_pred ccCCcccCCCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC-HHHH
Q psy6490 226 TLDGKKIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN-EEVV 304 (398)
Q Consensus 226 ~~~g~~l~v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~-~eaa 304 (398)
.|+.+.+....+........-..+..|||+|||+++||.||..+|+.||+|.+|.+++|+.||+|+||||+.|++ ....
T Consensus 12 ~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTI 91 (219)
T KOG0126|consen 12 KLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTI 91 (219)
T ss_pred HhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceE
Confidence 355566665555555555556677889999999999999999999999999999999999999999999999999 4556
Q ss_pred HHHHHHCCceeCCEEEEEEec
Q psy6490 305 DHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 305 ~a~~~l~~~~i~g~~i~v~~a 325 (398)
.|+-.|||..|.||.|+|.-.
T Consensus 92 LAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 92 LAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred EEEeccCCceecceeEEeeec
Confidence 777799999999999999753
No 51
>KOG1457|consensus
Probab=99.62 E-value=8.7e-15 Score=122.87 Aligned_cols=155 Identities=15% Similarity=0.251 Sum_probs=112.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCC-CCCCcccEEEEEEcChHhHHHHHh-CCCcccCC---cc
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDP-ITQRSRGFGFITFAEPETVEKVLK-VPIHTLDG---KK 231 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g---~~ 231 (398)
+...-+||||.+||.++...||+.+|+.|-..+.+.+.... ...-.+-+|||.|.+..+|..|++ +|+..|+- ..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 33468999999999999999999999999877777665432 222356799999999999999998 77777653 33
Q ss_pred cCCCCCCCCCCCcc------------------------------------------------------------------
Q psy6490 232 IDPKHATPKNRPKI------------------------------------------------------------------ 245 (398)
Q Consensus 232 l~v~~~~~~~~~~~------------------------------------------------------------------ 245 (398)
|.++.++...+..+
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 44433322110000
Q ss_pred -----------------CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHH-HHHHH
Q psy6490 246 -----------------GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE-VVDHI 307 (398)
Q Consensus 246 -----------------~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~e-aa~a~ 307 (398)
...+.+|||.||..++|||+|+.+|+.|-.....+|... .| ...|||+|++.+ +.+++
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHH
Confidence 002347999999999999999999999988776665322 33 448999999955 55667
Q ss_pred HHHCCcee
Q psy6490 308 CEIHFHMI 315 (398)
Q Consensus 308 ~~l~~~~i 315 (398)
..|.|..|
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 77887765
No 52
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=2e-15 Score=132.72 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=71.2
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCch
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~k 328 (398)
.++|||+||++++|+++|+++|+.||.|++|+|++|.. ++|||||+|+++++++.++.|+|..|+|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57899999999999999999999999999999998853 479999999999999999999999999999999998643
No 53
>KOG0113|consensus
Probab=99.61 E-value=3.3e-15 Score=130.69 Aligned_cols=90 Identities=19% Similarity=0.400 Sum_probs=79.6
Q ss_pred CCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH-HHHCCceeCCEEE
Q psy6490 242 RPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHI-CEIHFHMIKNKKV 320 (398)
Q Consensus 242 ~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~-~~l~~~~i~g~~i 320 (398)
.....++.+||||+-|+++++|.+|++.|+.||.|+.|.|++|+.||+++|||||+|+++-+.++| ...+|..|+|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 334457889999999999999999999999999999999999999999999999999997666555 5789999999999
Q ss_pred EEEecCchHHH
Q psy6490 321 ECKKAQPKEAV 331 (398)
Q Consensus 321 ~v~~a~~k~~~ 331 (398)
.|.+-.....+
T Consensus 174 ~VDvERgRTvk 184 (335)
T KOG0113|consen 174 LVDVERGRTVK 184 (335)
T ss_pred EEEeccccccc
Confidence 99987665543
No 54
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=1.5e-15 Score=150.06 Aligned_cols=160 Identities=16% Similarity=0.187 Sum_probs=122.6
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccc--cccceeeeecCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcC
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVV--REAHQLVLVNGKSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMF 185 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~ 185 (398)
..+.+|+.+.+..++..+...+... ...+..+.+.+....... ........++|||+||+.++++++|+++|++|
T Consensus 181 nRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~---d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 181 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEV---DEDVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred cCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccc---cccccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4567889999999998887665432 223344444443322111 11112346899999999999999999999999
Q ss_pred --CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCCCCc------------------
Q psy6490 186 --GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRPK------------------ 244 (398)
Q Consensus 186 --G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~~~~------------------ 244 (398)
|.|++|+++ ++||||+|.+.++|++|++ +++..|+|+.|+|.++.+.....
T Consensus 258 ~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~ 329 (578)
T TIGR01648 258 KPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAA 329 (578)
T ss_pred CCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCccccccc
Confidence 999999875 4599999999999999998 89999999999999887643320
Q ss_pred -------cCccccceeecCCCCCCCHHHHHHHHhhcCCeeE
Q psy6490 245 -------IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEE 278 (398)
Q Consensus 245 -------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~ 278 (398)
......+++++|++++.+++.+.++|..+|.|..
T Consensus 330 ~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 330 RQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIRG 370 (578)
T ss_pred ccccCcccCccccccccccccccccccchhhccccCccccC
Confidence 0124578999999999999999999999998663
No 55
>KOG0125|consensus
Probab=99.59 E-value=2.2e-15 Score=133.44 Aligned_cols=82 Identities=29% Similarity=0.550 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
...++|+|+|||+...|-||+.+|++||+|++|.|+.+. ..|||||||+|++.+||++|-+ +++..+.||+|+|..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 366899999999999999999999999999999999984 5589999999999999999987 9999999999999998
Q ss_pred CCCCC
Q psy6490 238 TPKNR 242 (398)
Q Consensus 238 ~~~~~ 242 (398)
..+..
T Consensus 172 TarV~ 176 (376)
T KOG0125|consen 172 TARVH 176 (376)
T ss_pred chhhc
Confidence 87644
No 56
>KOG0129|consensus
Probab=99.58 E-value=5.4e-14 Score=132.16 Aligned_cols=170 Identities=26% Similarity=0.387 Sum_probs=122.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCC--Cccc---EEEEEEcChHhHHHHHhCCCcccCCc
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQ--RSRG---FGFITFAEPETVEKVLKVPIHTLDGK 230 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~--~~~g---~afV~f~~~e~a~~al~~~~~~~~g~ 230 (398)
....-++.||||+||.+++|+.|...|..||.+.--+-.+....+ -.+| |+|+.|+++.++...+......-.+.
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 334578999999999999999999999999976532222221111 2566 99999999999988775211111111
Q ss_pred ccCCCCCCCC------------------CCCccCccccceeecCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCcc
Q psy6490 231 KIDPKHATPK------------------NRPKIGNRTKKIFVGGVSQDTSAEEVKAYFS-QFGKVEETVMLMDQQTKRHR 291 (398)
Q Consensus 231 ~l~v~~~~~~------------------~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~-~~G~i~~v~i~~~~~~~~~k 291 (398)
.+.|.....+ ......+..+||||++||.-++.++|..+|+ -||.|..+-|-+|++-+..|
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 1211111111 1223456788999999999999999999999 59999999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHHCCceeC----CEEEEEEec
Q psy6490 292 GFGFVTFENEEVVDHICEIHFHMIK----NKKVECKKA 325 (398)
Q Consensus 292 g~afV~F~~~eaa~a~~~l~~~~i~----g~~i~v~~a 325 (398)
|-|-|.|.+..+..+|++..-..|+ .|+|+|+-.
T Consensus 414 GaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPY 451 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPY 451 (520)
T ss_pred CcceeeecccHHHHHHHhhheEEEeccccceeeeecce
Confidence 9999999999988888775444433 346666543
No 57
>KOG0121|consensus
Probab=99.58 E-value=3.8e-15 Score=114.22 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=73.6
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
.+++|||+||++.++||.|.++|+++|+|++|++-.|+.+...-|||||+|.+.++|+.++ -++|+.++++.|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 5789999999999999999999999999999999999999999999999999977776555 699999999999999965
Q ss_pred ch
Q psy6490 327 PK 328 (398)
Q Consensus 327 ~k 328 (398)
.=
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 53
No 58
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=5.6e-15 Score=106.53 Aligned_cols=69 Identities=32% Similarity=0.717 Sum_probs=65.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 164 LFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 164 l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
|||+|||.++|+++|+++|+.||.|..+++..+ .++..+|||||+|.+.++|++|++ +++..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 588899999999999999999999 899999998873
No 59
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=133.35 Aligned_cols=126 Identities=29% Similarity=0.569 Sum_probs=108.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC-
Q psy6490 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT- 238 (398)
Q Consensus 161 ~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~- 238 (398)
.++|||+||+.++++++|+++|..||.|..+.+..|+.++.++|||||+|.+.+++..|++ +++..|.|++|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999999899999999999999999999998 78899999999999854
Q ss_pred ---CCCCCc-----------------cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC
Q psy6490 239 ---PKNRPK-----------------IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQ 286 (398)
Q Consensus 239 ---~~~~~~-----------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~ 286 (398)
.+.... .......+++.+++..++++++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 211111 122355789999999999999999999999997776655543
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.4e-14 Score=104.50 Aligned_cols=69 Identities=28% Similarity=0.616 Sum_probs=61.5
Q ss_pred eeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEE
Q psy6490 252 IFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVE 321 (398)
Q Consensus 252 l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~ 321 (398)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|+.+++ +++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 8999999999999888888775 566999999985
No 61
>KOG1190|consensus
Probab=99.56 E-value=4e-14 Score=128.84 Aligned_cols=158 Identities=18% Similarity=0.351 Sum_probs=130.4
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 161 SAKLFVGGLSW-QTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 161 ~~~l~v~nLp~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
+..|.|.||.. .+|.+.|..+|.-||.|.+|+|..++ +--|+|.|.+...|..|++ +++..+.|++|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 68899999965 58999999999999999999999986 4579999999999999998 89999999999988776
Q ss_pred CCCCC--------------------------------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC
Q psy6490 239 PKNRP--------------------------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQ 286 (398)
Q Consensus 239 ~~~~~--------------------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~ 286 (398)
..... ....++.+|.+.|+|.+++||||+.+|..-|...+......
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-- 449 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-- 449 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--
Confidence 53210 01124558999999999999999999999887765544332
Q ss_pred CCCcceEEEEEeCC-HHHHHHHHHHCCceeCCE-EEEEEecCc
Q psy6490 287 TKRHRGFGFVTFEN-EEVVDHICEIHFHMIKNK-KVECKKAQP 327 (398)
Q Consensus 287 ~~~~kg~afV~F~~-~eaa~a~~~l~~~~i~g~-~i~v~~a~~ 327 (398)
+.+-+|++.+++ +|+..+++.+|.+.+++. .++|+|++.
T Consensus 450 --kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 450 --KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred --CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 235599999999 667788889999999876 899999864
No 62
>KOG0122|consensus
Probab=99.56 E-value=6.5e-15 Score=125.49 Aligned_cols=81 Identities=26% Similarity=0.409 Sum_probs=77.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
+..+|-|.||+.+++|++|+++|..||.|..+.+.+|+.||.+||||||.|.+.++|.+||+ +++.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 77899999999999999999999999999999999999999999999999999999999998 88888888899999988
Q ss_pred CC
Q psy6490 239 PK 240 (398)
Q Consensus 239 ~~ 240 (398)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 65
No 63
>KOG1365|consensus
Probab=99.55 E-value=2.3e-14 Score=129.23 Aligned_cols=171 Identities=18% Similarity=0.308 Sum_probs=131.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC----CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMF----GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~----G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~ 235 (398)
..-.|.+++||+++++.++.+||..- |..+.|.+++.. +|+..|-|||.|..+++|..||..+...++-|.|++.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45678899999999999999999621 244556555543 7889999999999999999999888888888877654
Q ss_pred CCCCC----------------------------CCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeE---EEEeec
Q psy6490 236 HATPK----------------------------NRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEE---TVMLMD 284 (398)
Q Consensus 236 ~~~~~----------------------------~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~---v~i~~~ 284 (398)
++... ..........+|.+++||++.+.|||.+||..|-.-.+ |.++.+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 43321 00011223678999999999999999999999875333 444444
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCchHHHh
Q psy6490 285 QQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPKEAVQ 332 (398)
Q Consensus 285 ~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k~~~~ 332 (398)
..|+..|.|||+|.++|+|.++. +.|++.+++|.|+|--+...+...
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 57899999999999988887765 678888889999999887766554
No 64
>KOG0121|consensus
Probab=99.54 E-value=9.7e-15 Score=111.98 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
.+++||||||++.++|+.|.++|++||.|..|.|-.|+.+...-|||||+|.+.++|+.|++ +++..|+.+.|.+.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 78999999999999999999999999999999999999888899999999999999999999 89999999999888764
No 65
>KOG0120|consensus
Probab=99.54 E-value=3.8e-14 Score=135.60 Aligned_cols=173 Identities=21% Similarity=0.344 Sum_probs=135.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.......+||++||..++++.++++.+.||.+...+++.|..+|.++||+|.+|.+......|+. +|+..+++++|.+.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 34467899999999999999999999999999999999999999999999999999999999998 89999999998877
Q ss_pred CCCCCCCC---------------------ccCccccceeecCC--CCCC-CH-------HHHHHHHhhcCCeeEEEEeec
Q psy6490 236 HATPKNRP---------------------KIGNRTKKIFVGGV--SQDT-SA-------EEVKAYFSQFGKVEETVMLMD 284 (398)
Q Consensus 236 ~~~~~~~~---------------------~~~~~~~~l~V~nL--p~~~-te-------e~L~~~F~~~G~i~~v~i~~~ 284 (398)
.+...... .....+..|.+.|+ +.++ ++ |+|+.-|.+||.|.+|.|.++
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 65442211 11112334444444 1111 11 456677888999999999887
Q ss_pred CC---CCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCchH
Q psy6490 285 QQ---TKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 285 ~~---~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k~ 329 (398)
.. .....|..||+|.+.++++.|+ +|+|.+|.||.|...|.....
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 22 2335678999999977666555 799999999999999986543
No 66
>KOG0126|consensus
Probab=99.54 E-value=9.2e-16 Score=124.74 Aligned_cols=92 Identities=20% Similarity=0.451 Sum_probs=83.2
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCc
Q psy6490 152 STPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGK 230 (398)
Q Consensus 152 ~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~ 230 (398)
.++..+-.++.-|||||||+++||.||.-+|++||+|++|.+++|+.||+|+||||+.|++..+...|+. +|+..+.||
T Consensus 26 ~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 26 KSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 3455566688999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred ccCCCCCCCCCCC
Q psy6490 231 KIDPKHATPKNRP 243 (398)
Q Consensus 231 ~l~v~~~~~~~~~ 243 (398)
.|+|........+
T Consensus 106 tirVDHv~~Yk~p 118 (219)
T KOG0126|consen 106 TIRVDHVSNYKKP 118 (219)
T ss_pred eEEeeecccccCC
Confidence 9999877654443
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=2.1e-14 Score=126.33 Aligned_cols=79 Identities=16% Similarity=0.306 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~ 239 (398)
..++|||+||++++|+++|+++|+.||.|.+|+|.+|+. ++|||||+|.+.++|+.||.+++..|.|+.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 358999999999999999999999999999999998863 47899999999999999999999999999999998765
Q ss_pred CC
Q psy6490 240 KN 241 (398)
Q Consensus 240 ~~ 241 (398)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 44
No 68
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=4.6e-14 Score=122.15 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=70.8
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCc
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~ 327 (398)
...+|||+||++++|+++|+++|+.||.|++|+|++|. ..+|||||+|++.++++.++.|+|..|.|+.|.|..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 35789999999999999999999999999999999884 446899999999999999999999999999999987653
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=3.3e-14 Score=102.59 Aligned_cols=69 Identities=32% Similarity=0.657 Sum_probs=62.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 164 LFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 164 l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
|||+|||.++++++|+++|+.||.|..+++..++. +.++|+|||+|.+.++|.+|++ .++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 8999999999999999999999 455889998763
No 70
>KOG4207|consensus
Probab=99.52 E-value=2.2e-14 Score=119.15 Aligned_cols=83 Identities=18% Similarity=0.381 Sum_probs=74.6
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
+.+...+|.|.||-+.++.++|+.+|++||.|-+|.|.+|..|+.++|||||.|.+..+|+.|+ .|+|..|+|+.|+|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3455678999999999999999999999999999999999999999999999999976665555 699999999999999
Q ss_pred ecCc
Q psy6490 324 KAQP 327 (398)
Q Consensus 324 ~a~~ 327 (398)
+|+-
T Consensus 89 ~ary 92 (256)
T KOG4207|consen 89 MARY 92 (256)
T ss_pred hhhc
Confidence 8754
No 71
>KOG0114|consensus
Probab=99.51 E-value=1.4e-13 Score=101.68 Aligned_cols=84 Identities=18% Similarity=0.353 Sum_probs=72.9
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
.+.++.|||+|||+++|.|+..++|.+||.|..|+|-.++.| +|.|||.|++..+|+.++ .|+|..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 445778999999999999999999999999999999766544 899999999977776665 6999999999999999
Q ss_pred cCchHHHh
Q psy6490 325 AQPKEAVQ 332 (398)
Q Consensus 325 a~~k~~~~ 332 (398)
..+....+
T Consensus 92 yq~~~~~~ 99 (124)
T KOG0114|consen 92 YQPEDAFK 99 (124)
T ss_pred cCHHHHHH
Confidence 88765544
No 72
>KOG0117|consensus
Probab=99.51 E-value=1.1e-13 Score=127.53 Aligned_cols=81 Identities=28% Similarity=0.465 Sum_probs=73.4
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHH-HHHHHHHHCCceeC-CEEEEEEe
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE-VVDHICEIHFHMIK-NKKVECKK 324 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~e-aa~a~~~l~~~~i~-g~~i~v~~ 324 (398)
...+.|||+.||.++.|+||.-+|++.|+|-++++++|+.+|.+||||||.|.+.+ +++|+.+||+++|. ||.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 56788999999999999999999999999999999999999999999999999954 55677789999985 89999988
Q ss_pred cCc
Q psy6490 325 AQP 327 (398)
Q Consensus 325 a~~ 327 (398)
+..
T Consensus 161 Sva 163 (506)
T KOG0117|consen 161 SVA 163 (506)
T ss_pred eee
Confidence 754
No 73
>KOG0113|consensus
Probab=99.50 E-value=4.8e-14 Score=123.49 Aligned_cols=80 Identities=26% Similarity=0.512 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
++-+||||+-|+++++|.+|+..|+.||.|+.|.|++|+.||+++|||||+|+++.+...|.+ .++..|+|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 478999999999999999999999999999999999999999999999999999999999998 7899999999977654
Q ss_pred C
Q psy6490 238 T 238 (398)
Q Consensus 238 ~ 238 (398)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 3
No 74
>KOG0107|consensus
Probab=99.50 E-value=5.1e-14 Score=114.15 Aligned_cols=77 Identities=19% Similarity=0.415 Sum_probs=69.1
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN-EEVVDHICEIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~-~eaa~a~~~l~~~~i~g~~i~v~~a~ 326 (398)
..++|||+||+..+++.||..+|..||.|.+|+|.+.+ -|||||+|++ .+|.+|+..|+|+.|.|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 46789999999999999999999999999999998754 7899999999 56667778999999999999999987
Q ss_pred chH
Q psy6490 327 PKE 329 (398)
Q Consensus 327 ~k~ 329 (398)
.+.
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 654
No 75
>KOG4212|consensus
Probab=99.50 E-value=4.8e-13 Score=122.74 Aligned_cols=72 Identities=14% Similarity=0.287 Sum_probs=64.0
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
.++|||+|||+++|+..|++-|..||.|+++.|+ +.|+++| .|+|.++++|+.++ .|++..++||.|+|.+.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3469999999999999999999999999999884 4688887 89999988887776 58999999999999873
No 76
>KOG0130|consensus
Probab=99.48 E-value=5.7e-14 Score=108.69 Aligned_cols=88 Identities=18% Similarity=0.339 Sum_probs=77.8
Q ss_pred CccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH-HHHCCceeCCEEEE
Q psy6490 243 PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHI-CEIHFHMIKNKKVE 321 (398)
Q Consensus 243 ~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~-~~l~~~~i~g~~i~ 321 (398)
+........|||.++..+.+||+|.+.|..||+|+++.+..|..||..||||+|+|++.+.|.++ -.+||..|.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 34445677899999999999999999999999999999999999999999999999996666555 47999999999999
Q ss_pred EEecCchHH
Q psy6490 322 CKKAQPKEA 330 (398)
Q Consensus 322 v~~a~~k~~ 330 (398)
|.||-.+..
T Consensus 146 VDw~Fv~gp 154 (170)
T KOG0130|consen 146 VDWCFVKGP 154 (170)
T ss_pred EEEEEecCC
Confidence 999976543
No 77
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=1.6e-13 Score=118.88 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~ 239 (398)
...+|||+||++++|+++|++||+.||+|.+|+|++|. ..++||||+|+++++++.|+.+++..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45899999999999999999999999999999999984 456899999999999999999999999999998887654
Q ss_pred C
Q psy6490 240 K 240 (398)
Q Consensus 240 ~ 240 (398)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=1.8e-13 Score=127.23 Aligned_cols=78 Identities=17% Similarity=0.376 Sum_probs=68.2
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCH--HHHHH-HHHHCCceeCCEEEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENE--EVVDH-ICEIHFHMIKNKKVECK 323 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~--eaa~a-~~~l~~~~i~g~~i~v~ 323 (398)
....+|||+||+++++++||+.+|..||.|.+|.|+++ +| ||||||+|.+. +++.+ +..|||..++||.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34578999999999999999999999999999999944 66 99999999975 44544 45799999999999999
Q ss_pred ecCch
Q psy6490 324 KAQPK 328 (398)
Q Consensus 324 ~a~~k 328 (398)
.|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99884
No 79
>KOG0146|consensus
Probab=99.46 E-value=1.1e-12 Score=113.20 Aligned_cols=103 Identities=23% Similarity=0.392 Sum_probs=83.8
Q ss_pred CcccCCCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH-H
Q psy6490 229 GKKIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-I 307 (398)
Q Consensus 229 g~~l~v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a-~ 307 (398)
.|.|.|+.+..+.+. .+.++|||+-|...-+|||++.+|..||.|++|.+.+. .+|.+||||||+|.+..+|.+ |
T Consensus 2 nrpiqvkpadsesrg---~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG---GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCC---ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHH
Confidence 467778777765553 36788999999999999999999999999999999998 479999999999999655555 5
Q ss_pred HHHCCcee-C--CEEEEEEecCchHHHhhhh
Q psy6490 308 CEIHFHMI-K--NKKVECKKAQPKEAVQANL 335 (398)
Q Consensus 308 ~~l~~~~i-~--g~~i~v~~a~~k~~~~~~~ 335 (398)
..|||..- - ...|.|+|++...+|.-.+
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRR 108 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRR 108 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHH
Confidence 57888653 3 5789999998877765543
No 80
>KOG0107|consensus
Probab=99.46 E-value=9.9e-14 Score=112.49 Aligned_cols=78 Identities=24% Similarity=0.570 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
-.+.||||||+.++++.||+.+|..||.|.+|+|-+++ .|||||+|++..+|+.|+. |++..|.|..|.|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 46899999999999999999999999999999998874 8999999999999999998 89999999999998876
Q ss_pred CCCC
Q psy6490 239 PKNR 242 (398)
Q Consensus 239 ~~~~ 242 (398)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6544
No 81
>KOG0114|consensus
Probab=99.46 E-value=1.6e-13 Score=101.26 Aligned_cols=105 Identities=18% Similarity=0.343 Sum_probs=83.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
-+.+.++.|||+|||+++|.++..++|.+||.|..|+|-.++.| +|.|||.|++..+|++|++ +.+..+.++.+.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 34457899999999999999999999999999999999877654 8999999999999999998 8999999999988
Q ss_pred CCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcC
Q psy6490 235 KHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFG 274 (398)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G 274 (398)
.+......... +...-.+++|..+=++||
T Consensus 90 lyyq~~~~~~~-----------~~~~k~~~~l~~~~~ky~ 118 (124)
T KOG0114|consen 90 LYYQPEDAFKL-----------MDSRKAREELSILKEKYG 118 (124)
T ss_pred EecCHHHHHHH-----------HHhHHhhhHHHHHHHHhc
Confidence 77765433211 122334566666666665
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=7.5e-13 Score=95.27 Aligned_cols=71 Identities=28% Similarity=0.577 Sum_probs=63.5
Q ss_pred ceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
+|||+|||..+++++|+++|+.||.|.++.+..+. +.++|+|||+|.+.++|+.++ .+++..++|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 778999999999977776655 689999999999874
No 83
>KOG4207|consensus
Probab=99.43 E-value=2.3e-13 Score=113.12 Aligned_cols=83 Identities=34% Similarity=0.538 Sum_probs=77.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
+.+...+|-|-||-+.++.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|.+..+|+.|++ |++.+|+|+.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34467899999999999999999999999999999999999999999999999999999999998 89999999999887
Q ss_pred CCCC
Q psy6490 236 HATP 239 (398)
Q Consensus 236 ~~~~ 239 (398)
.+.-
T Consensus 89 ~ary 92 (256)
T KOG4207|consen 89 MARY 92 (256)
T ss_pred hhhc
Confidence 6543
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=9e-13 Score=94.50 Aligned_cols=70 Identities=31% Similarity=0.619 Sum_probs=63.7
Q ss_pred ecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 254 VGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 254 V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
|+|||.++++++|+++|+.||.|.++.+..++.++.++|+|||+|.+.++|+.++ .+++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999999999998878999999999999988777666 689999999999874
No 85
>KOG0108|consensus
Probab=99.41 E-value=6.6e-13 Score=126.61 Aligned_cols=86 Identities=26% Similarity=0.474 Sum_probs=77.4
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCEEEEEEecCch
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~~i~v~~a~~k 328 (398)
+.|||+|||++++||+|.++|+..|.|.+++++.|+++|++|||||++|.+.+.+ +++..|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999999999999999999999999999999999999999999996554 556689999999999999998776
Q ss_pred HHHhhhh
Q psy6490 329 EAVQANL 335 (398)
Q Consensus 329 ~~~~~~~ 335 (398)
..+....
T Consensus 99 ~~~~~~~ 105 (435)
T KOG0108|consen 99 KNAERSL 105 (435)
T ss_pred chhHHHH
Confidence 6655443
No 86
>KOG0108|consensus
Probab=99.41 E-value=4.8e-13 Score=127.53 Aligned_cols=81 Identities=27% Similarity=0.541 Sum_probs=77.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPK 240 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~ 240 (398)
+.|||||||++++|++|.++|+..|.|.+++++.|+.+|+.+||||++|.+.+++.+|++ +++.+++||+|+|.+....
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999 8999999999999998765
Q ss_pred CC
Q psy6490 241 NR 242 (398)
Q Consensus 241 ~~ 242 (398)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 87
>KOG0111|consensus
Probab=99.39 E-value=1.7e-13 Score=114.78 Aligned_cols=85 Identities=26% Similarity=0.601 Sum_probs=76.5
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHH-HHHHHHHHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE-VVDHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~e-aa~a~~~l~~~~i~g~~i~v~~ 324 (398)
....++|||++|-.+++|.-|...|-+||.|++|.+..|.++.+.|||+||+|+-.| ++.|+-.||+.+|.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 345789999999999999999999999999999999999999999999999999855 5555568999999999999999
Q ss_pred cCchHH
Q psy6490 325 AQPKEA 330 (398)
Q Consensus 325 a~~k~~ 330 (398)
+++..-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 988543
No 88
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=8.2e-13 Score=122.98 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcCh--HhHHHHHh-CCCcccCCcccCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEP--ETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~--e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
....+||||||++++++++|+.+|..||.|.+|.|+++ +| ||||||+|.+. .++.+||+ +++..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 36689999999999999999999999999999999955 56 99999999987 67999998 99999999999998
Q ss_pred CCCC
Q psy6490 236 HATP 239 (398)
Q Consensus 236 ~~~~ 239 (398)
.+++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8766
No 89
>KOG0120|consensus
Probab=99.38 E-value=1.4e-12 Score=125.06 Aligned_cols=169 Identities=19% Similarity=0.403 Sum_probs=138.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcC-----------C-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMF-----------G-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPI 224 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~-----------G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~ 224 (398)
.....+.+||++++..++++.+..+|..- | .+..+.+... +.|+|++|.+.++|..++.+++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~~~~ 244 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMALDG 244 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhcccc
Confidence 34467899999999999999999999643 3 3666666544 6799999999999999999999
Q ss_pred cccCCcccCCCCCCCCC--------------------CCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeec
Q psy6490 225 HTLDGKKIDPKHATPKN--------------------RPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMD 284 (398)
Q Consensus 225 ~~~~g~~l~v~~~~~~~--------------------~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~ 284 (398)
..+.|+.+.+....... .........++||++||..++++.++++.+.||.+....++.|
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d 324 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD 324 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc
Confidence 89999887765433321 1122334567999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCchHHH
Q psy6490 285 QQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPKEAV 331 (398)
Q Consensus 285 ~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k~~~ 331 (398)
..+|.++||||.+|.+......++ .|||..++++.|.|..+-.....
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 999999999999999977665554 69999999999999998665433
No 90
>KOG0131|consensus
Probab=99.38 E-value=5.9e-13 Score=108.73 Aligned_cols=80 Identities=26% Similarity=0.459 Sum_probs=73.9
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
+...+|||+||+..++++-|+++|-..|.|.++.|.+|+.+...+|||||+|.++|+|+-++ -||..+|.||.|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45678999999999999999999999999999999999999999999999999988887655 58999999999999998
Q ss_pred C
Q psy6490 326 Q 326 (398)
Q Consensus 326 ~ 326 (398)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=1.9e-12 Score=93.11 Aligned_cols=70 Identities=36% Similarity=0.638 Sum_probs=64.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 163 ~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
+|||+|||.++++++|+++|+.||.|.++++..++ +.++|+|||+|.+.++|++|++ +++..++|++|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999886 6789999999999999999998 6778888888765
No 92
>KOG1456|consensus
Probab=99.37 E-value=2.2e-11 Score=109.85 Aligned_cols=161 Identities=16% Similarity=0.177 Sum_probs=127.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhC---CCcccCCcccCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV---PIHTLDGKKIDP 234 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~---~~~~~~g~~l~v 234 (398)
...+-.|.|++|-..++|.+|.+.++.||.|..+.++.. +..+.|+|++.+.|+.++.+ +...+.|..-.+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 346789999999999999999999999999998887765 44799999999999999973 555678887777
Q ss_pred CCCCCCCCC----ccCcccccee--ecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q psy6490 235 KHATPKNRP----KIGNRTKKIF--VGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 235 ~~~~~~~~~----~~~~~~~~l~--V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
.++...... +....++.|. |-|--+.+|.|-|..++...|.|.+|.|++. + ---|.|+|++.++|++++
T Consensus 102 NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk 176 (494)
T KOG1456|consen 102 NYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAK 176 (494)
T ss_pred ccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHH
Confidence 777543322 2222333343 5555678999999999999999999998766 2 247999999999998888
Q ss_pred -HHCCcee--CCEEEEEEecCchH
Q psy6490 309 -EIHFHMI--KNKKVECKKAQPKE 329 (398)
Q Consensus 309 -~l~~~~i--~g~~i~v~~a~~k~ 329 (398)
.|||..| +-.+|+|++|++..
T Consensus 177 ~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 177 AALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred hhcccccccccceeEEEEecCcce
Confidence 5899876 45789999998743
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=8.1e-12 Score=90.32 Aligned_cols=73 Identities=30% Similarity=0.611 Sum_probs=64.8
Q ss_pred ceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
+|+|+|||..+++++|+++|+.||.|.++.+..+..+ ..+|+|||+|.+.++|..++ .+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988544 77899999999977776655 6899999999999875
No 94
>KOG1190|consensus
Probab=99.36 E-value=3e-12 Score=116.78 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=117.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh---CCCcccCCcccCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK---VPIHTLDGKKIDPK 235 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~---~~~~~~~g~~l~v~ 235 (398)
..++.|.+||||.+++|+||.+++..||+|..+.+.+. +.-+|++|.++++|...+. .-.-.+.|+.|.+.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 47899999999999999999999999999999998875 3379999999999987443 12233667777666
Q ss_pred CCCCCCCCc-------------------------------------cCccccceeecCCCCCCCHHHHHHHHhhcCCeeE
Q psy6490 236 HATPKNRPK-------------------------------------IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEE 278 (398)
Q Consensus 236 ~~~~~~~~~-------------------------------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~ 278 (398)
++..+.... ....--+++|.|+-+.++-|-|..+|++||.|.+
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 543321100 0011225789999999999999999999999998
Q ss_pred EEEeecCCCCCcceE-EEEEeCCHHHHHHHH-HHCCceeCC--EEEEEEecCc
Q psy6490 279 TVMLMDQQTKRHRGF-GFVTFENEEVVDHIC-EIHFHMIKN--KKVECKKAQP 327 (398)
Q Consensus 279 v~i~~~~~~~~~kg~-afV~F~~~eaa~a~~-~l~~~~i~g--~~i~v~~a~~ 327 (398)
|.-+... .|| |+|.|.+.+.|..++ .|+|..|.+ +.|+|.|++-
T Consensus 180 IiTF~Kn-----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 180 IITFTKN-----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEEecc-----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 7654332 334 899999988877766 688888754 4556665543
No 95
>KOG0226|consensus
Probab=99.35 E-value=8.1e-13 Score=113.38 Aligned_cols=169 Identities=17% Similarity=0.322 Sum_probs=129.7
Q ss_pred CCcEEEEcCCCCCCCHHH-H--HHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEK-L--REYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~-L--~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
....++++++-.++..+- | ...|+.|-.+...+++++. .+.-++++|+.|.....-.++-. .+++++....|+..
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 456677777766666555 3 6678888777777777775 45568899999987776666543 34445555545555
Q ss_pred CCCCCCCC---ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHH-HHHHHHHHC
Q psy6490 236 HATPKNRP---KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE-VVDHICEIH 311 (398)
Q Consensus 236 ~~~~~~~~---~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~e-aa~a~~~l~ 311 (398)
........ +..+...+||++.|..+++++-|...|.+|-.....++++|+.+|+++||+||.|.+.+ .+.|..+|+
T Consensus 174 ~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 174 AGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred cccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc
Confidence 54444333 34556778999999999999999999999999999999999999999999999999955 556666999
Q ss_pred CceeCCEEEEEEecCchH
Q psy6490 312 FHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 312 ~~~i~g~~i~v~~a~~k~ 329 (398)
|++++.|.|+++.+.-++
T Consensus 254 gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 254 GKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred ccccccchhHhhhhhHHh
Confidence 999999999998776655
No 96
>KOG0111|consensus
Probab=99.34 E-value=9.9e-13 Score=110.28 Aligned_cols=83 Identities=31% Similarity=0.515 Sum_probs=79.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
..++||||+|..+++|.-|...|-.||.|.+|.+..|..+.++|||+||+|...|+|..||. +|..+|.||.|+|..+.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 67999999999999999999999999999999999999999999999999999999999998 99999999999999998
Q ss_pred CCCC
Q psy6490 239 PKNR 242 (398)
Q Consensus 239 ~~~~ 242 (398)
+...
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7554
No 97
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=4.1e-12 Score=90.99 Aligned_cols=69 Identities=36% Similarity=0.639 Sum_probs=63.7
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 166 VGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 166 v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
|+|||.++++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|++ +++..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 58999999999999999999999999999988888999999999999999999998 6778888888765
No 98
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=5e-12 Score=116.46 Aligned_cols=78 Identities=31% Similarity=0.625 Sum_probs=72.4
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
.++|||+||+.++++++|+++|..||.|..+.+..|+.++.++|||||+|.+.+.+..++ .+++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 689999999999999999999999999999999999889999999999999987776555 689999999999999965
No 99
>KOG1365|consensus
Probab=99.33 E-value=3.6e-12 Score=115.23 Aligned_cols=176 Identities=21% Similarity=0.282 Sum_probs=137.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKH 236 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~ 236 (398)
...++..|..++||+..++.+|..+|.-..-..-.+.+.....|+..|.+.|.|.|.|.-+.|++.+.+.+.++.|.|..
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYk 135 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYK 135 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeec
Confidence 34467888899999999999999999755433333444444567778999999999999999999999999999999877
Q ss_pred CCCCCCCc-------------cCccccceeecCCCCCCCHHHHHHHHhhc----CCeeEEEEeecCCCCCcceEEEEEeC
Q psy6490 237 ATPKNRPK-------------IGNRTKKIFVGGVSQDTSAEEVKAYFSQF----GKVEETVMLMDQQTKRHRGFGFVTFE 299 (398)
Q Consensus 237 ~~~~~~~~-------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~----G~i~~v~i~~~~~~~~~kg~afV~F~ 299 (398)
+...+-.. .....-.|.+++||+++++.|+.+||..- |..+.|.+++. .+|+..|-|||.|.
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFA 214 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEec
Confidence 66543211 11233468899999999999999999732 34555555555 47999999999999
Q ss_pred CHHHHHHHHHHCCceeCCEEEEEEecCchHHHhh
Q psy6490 300 NEEVVDHICEIHFHMIKNKKVECKKAQPKEAVQA 333 (398)
Q Consensus 300 ~~eaa~a~~~l~~~~i~g~~i~v~~a~~k~~~~~ 333 (398)
.++.|..++..|...|+-|.|++-++...+..+.
T Consensus 215 ~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqv 248 (508)
T KOG1365|consen 215 CEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQV 248 (508)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999988776665443
No 100
>KOG4205|consensus
Probab=99.30 E-value=2e-12 Score=118.25 Aligned_cols=103 Identities=38% Similarity=0.622 Sum_probs=92.5
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCc
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~ 327 (398)
..++|||++|++++++|.|+++|+.||+|.+|.+++|+.+++++||+||+|.+.+...+++....+.|+||.|.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhh--hcCCccccCCCCCCC
Q psy6490 328 KEAVQANL--LVGKRVILGPLGLRM 350 (398)
Q Consensus 328 k~~~~~~~--~~~~~~~~~~~~~~~ 350 (398)
+++..... ...++++++++....
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~ 109 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDT 109 (311)
T ss_pred cccccccccccceeEEEecCcCCCC
Confidence 88766543 246788888765544
No 101
>KOG4210|consensus
Probab=99.30 E-value=2.4e-12 Score=117.49 Aligned_cols=173 Identities=18% Similarity=0.246 Sum_probs=139.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCc-ccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIH-TLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~-~~~g~~l~v~~~~ 238 (398)
...++|++++...+.+.++..++..+|.+....+........++|++++.|...+.+..++.+... .+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 578999999999999999999999999888888888777888999999999999999999986664 4555554433332
Q ss_pred CCC-------CCccCcccccee-ecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q psy6490 239 PKN-------RPKIGNRTKKIF-VGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310 (398)
Q Consensus 239 ~~~-------~~~~~~~~~~l~-V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l 310 (398)
... .........++| |++|++.+++++|+.+|..+|.|..+++..+..++.++|||||.|.+.......+..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 222 112223344555 999999999999999999999999999999999999999999999996555444433
Q ss_pred CCceeCCEEEEEEecCchHHHh
Q psy6490 311 HFHMIKNKKVECKKAQPKEAVQ 332 (398)
Q Consensus 311 ~~~~i~g~~i~v~~a~~k~~~~ 332 (398)
....+.++.+.+.+..+.....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPRPKSD 268 (285)
T ss_pred ccCcccCcccccccCCCCcccc
Confidence 8899999999999988775543
No 102
>KOG4307|consensus
Probab=99.29 E-value=1.1e-10 Score=113.16 Aligned_cols=175 Identities=10% Similarity=0.039 Sum_probs=134.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCC
Q psy6490 155 TGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDP 234 (398)
Q Consensus 155 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v 234 (398)
.....+++.+-+.+++++.++.|++++|... .|-.+.|..+...+...|.++|+|....++.+|++.+...+-.|.+.+
T Consensus 305 pqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~ 383 (944)
T KOG4307|consen 305 PQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQT 383 (944)
T ss_pred CcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceee
Confidence 3444577888899999999999999999643 456666777766666688999999999999999998887777777766
Q ss_pred CCCCCCCCC------------------------------------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeE
Q psy6490 235 KHATPKNRP------------------------------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEE 278 (398)
Q Consensus 235 ~~~~~~~~~------------------------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~ 278 (398)
......... .......+|||..||..+++.++.++|..--.|++
T Consensus 384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhh
Confidence 544332110 11223558999999999999999999998777777
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHH-HHHHHHHCCceeCCEEEEEEecCchHH
Q psy6490 279 TVMLMDQQTKRHRGFGFVTFENEEV-VDHICEIHFHMIKNKKVECKKAQPKEA 330 (398)
Q Consensus 279 v~i~~~~~~~~~kg~afV~F~~~ea-a~a~~~l~~~~i~g~~i~v~~a~~k~~ 330 (398)
.+.+...-+++-++.|||.|..+++ ..++...+.++++.|.|+|.-...+.+
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 4333333577889999999999554 466667889999999999988776665
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.28 E-value=1.9e-11 Score=87.87 Aligned_cols=61 Identities=25% Similarity=0.448 Sum_probs=52.1
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeecCCC--CCcceEEEEEeCCHHHHHH-HHHHCCceeCCEEEEEE
Q psy6490 263 AEEVKAYFS----QFGKVEETV-MLMDQQT--KRHRGFGFVTFENEEVVDH-ICEIHFHMIKNKKVECK 323 (398)
Q Consensus 263 ee~L~~~F~----~~G~i~~v~-i~~~~~~--~~~kg~afV~F~~~eaa~a-~~~l~~~~i~g~~i~v~ 323 (398)
+++|+++|+ +||.|.+|. |+.++.+ +.++|||||+|++.++|.+ +..|||..++||.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678888888 999999995 7777666 8999999999999777655 55799999999999873
No 104
>KOG4211|consensus
Probab=99.28 E-value=4.4e-11 Score=112.01 Aligned_cols=164 Identities=18% Similarity=0.255 Sum_probs=126.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTD-VLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~-~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
.....|-+++||+.||++||.+||+-.-.+.+ +.++.+. .+++.|-|||.|++.|.|++||..+...|+-|.|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 36789999999999999999999998765554 4455555 567899999999999999999987777777666654322
Q ss_pred CCCC------------------------CC--------------------------------------------------
Q psy6490 238 TPKN------------------------RP-------------------------------------------------- 243 (398)
Q Consensus 238 ~~~~------------------------~~-------------------------------------------------- 243 (398)
.... +.
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 1100 00
Q ss_pred -c--------------c-CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q psy6490 244 -K--------------I-GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHI 307 (398)
Q Consensus 244 -~--------------~-~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~ 307 (398)
. . ......++.++||++.++.+|..+|+..-.+ .|.|... .+|+..|.|+|+|.+.++|.++
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~A 337 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGA 337 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhh
Confidence 0 0 0011468899999999999999999985544 4666555 5799999999999999999999
Q ss_pred HHHCCceeCCEEEEEEec
Q psy6490 308 CEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 308 ~~l~~~~i~g~~i~v~~a 325 (398)
+..++..+..+.|++-.-
T Consensus 338 mskd~anm~hrYVElFln 355 (510)
T KOG4211|consen 338 MGKDGANMGHRYVELFLN 355 (510)
T ss_pred hccCCcccCcceeeeccc
Confidence 999999999999887653
No 105
>KOG0109|consensus
Probab=99.27 E-value=5.4e-12 Score=110.32 Aligned_cols=86 Identities=20% Similarity=0.501 Sum_probs=72.2
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCch
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k 328 (398)
.+|||+|||.++++.+|+.+|++||+|.+|.|+++ ||||..+++.+++.++ +||+.+|.|..|.|+-++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999966 9999999988886655 69999999999999999988
Q ss_pred HHHhhhhhcCCccccCCCCCC
Q psy6490 329 EAVQANLLVGKRVILGPLGLR 349 (398)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ 349 (398)
... ..++.+|++...
T Consensus 75 sk~------stkl~vgNis~t 89 (346)
T KOG0109|consen 75 SKA------STKLHVGNISPT 89 (346)
T ss_pred CCC------ccccccCCCCcc
Confidence 322 234555554433
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=2.9e-11 Score=82.87 Aligned_cols=55 Identities=24% Similarity=0.466 Sum_probs=47.6
Q ss_pred HHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 266 VKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 266 L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
|+++|++||.|+++.+..+. +++|||+|.+.++|+.++ .|||..++|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987663 589999999988887766 59999999999999986
No 107
>KOG0130|consensus
Probab=99.26 E-value=1e-11 Score=96.35 Aligned_cols=82 Identities=15% Similarity=0.321 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
....|||.++..+.+|++|.+.|..||+|+++.+..|+.||-.|||++|+|++.+.|..|+. +|+..|-|..|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 66889999999999999999999999999999999999999999999999999999999998 89999999999999986
Q ss_pred CCC
Q psy6490 239 PKN 241 (398)
Q Consensus 239 ~~~ 241 (398)
.+.
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 554
No 108
>KOG0415|consensus
Probab=99.25 E-value=8.6e-12 Score=111.74 Aligned_cols=83 Identities=22% Similarity=0.423 Sum_probs=75.9
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH-HHHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHI-CEIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~-~~l~~~~i~g~~i~v~~ 324 (398)
..+.+.|||..|..-+|+|||.-+|+.||.|.+|.|++|..||.+-.||||+|++.+++++| .+|++..|++|.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34567899999999999999999999999999999999999999999999999998877665 59999999999999999
Q ss_pred cCch
Q psy6490 325 AQPK 328 (398)
Q Consensus 325 a~~k 328 (398)
+.+-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 7653
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=3.2e-11 Score=87.11 Aligned_cols=72 Identities=39% Similarity=0.665 Sum_probs=64.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 163 ~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
+|+|+|||.++++++|+++|+.||.|..+.+..+..+ ..+|+|||+|.+.++|..|++ +++..++|+++.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999988654 678999999999999999998 67777888887664
No 110
>KOG0105|consensus
Probab=99.22 E-value=2.2e-11 Score=99.61 Aligned_cols=80 Identities=19% Similarity=0.339 Sum_probs=66.8
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~~i~v~~a 325 (398)
...++|||+|||.++.+.||.++|.+||.|..|.+... ...-.||||+|++..+| .|+..-+|..++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35678999999999999999999999999999987433 22357999999995544 566678999999999999998
Q ss_pred CchH
Q psy6490 326 QPKE 329 (398)
Q Consensus 326 ~~k~ 329 (398)
..-.
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 7653
No 111
>KOG4208|consensus
Probab=99.20 E-value=9e-11 Score=98.19 Aligned_cols=92 Identities=25% Similarity=0.458 Sum_probs=78.5
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQF-GKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~-G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
......++|+.+|..+.+.+|..+|..| |.|.++++-|++.||.|||||||+|+++|.|+.+- .||+..|.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455679999999999999999999998 78888888899999999999999999999887765 599999999999999
Q ss_pred ecCchHHHhhhhhc
Q psy6490 324 KAQPKEAVQANLLV 337 (398)
Q Consensus 324 ~a~~k~~~~~~~~~ 337 (398)
+-.+..........
T Consensus 126 vmppe~~v~~~~~k 139 (214)
T KOG4208|consen 126 VMPPEQKVEKNLKK 139 (214)
T ss_pred EeCchhhhhhhhhh
Confidence 98776444444433
No 112
>KOG4454|consensus
Probab=99.19 E-value=5.9e-12 Score=105.73 Aligned_cols=122 Identities=25% Similarity=0.362 Sum_probs=105.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
..++|||+|+...++|+-|.++|-.-|.|..|.|..++ +++.| ||||.|.++-++.-|++ +|+..+.++.+.++
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~--- 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT--- 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc---
Confidence 67999999999999999999999999999999998876 55566 99999999999999999 67777777766544
Q ss_pred CCCCCccCccccceeecC----CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC
Q psy6490 239 PKNRPKIGNRTKKIFVGG----VSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN 300 (398)
Q Consensus 239 ~~~~~~~~~~~~~l~V~n----Lp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~ 300 (398)
++.++ |...+++|.+.+.|+.-|.++.+++.++. +|+++.+.|+.+..
T Consensus 83 -------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr 134 (267)
T KOG4454|consen 83 -------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQR 134 (267)
T ss_pred -------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhh
Confidence 44445 77789999999999999999999999885 48888899998765
No 113
>KOG0153|consensus
Probab=99.19 E-value=5.8e-11 Score=106.51 Aligned_cols=80 Identities=24% Similarity=0.529 Sum_probs=70.3
Q ss_pred CccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--HCCceeCCEEE
Q psy6490 243 PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE--IHFHMIKNKKV 320 (398)
Q Consensus 243 ~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~--l~~~~i~g~~i 320 (398)
+..+...++|||++|...++|.||+++|.+||+|+.++++.. ++||||+|.+.++|+.+.+ ++...|+|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 344556789999999999999999999999999999999766 6799999999888876653 68889999999
Q ss_pred EEEecCch
Q psy6490 321 ECKKAQPK 328 (398)
Q Consensus 321 ~v~~a~~k 328 (398)
+|.|..++
T Consensus 296 ~i~Wg~~~ 303 (377)
T KOG0153|consen 296 KIKWGRPK 303 (377)
T ss_pred EEEeCCCc
Confidence 99999983
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=99.15 E-value=8.3e-11 Score=84.53 Aligned_cols=60 Identities=25% Similarity=0.469 Sum_probs=53.6
Q ss_pred HHHHHHHHh----cCCCEEEEE-EeeCCCC--CCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 175 SEKLREYFG----MFGAVTDVL-IMKDPIT--QRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 175 ~~~L~~~f~----~~G~i~~~~-~~~~~~~--~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
+++|+++|+ +||.|.++. +..++.+ +.++||+||+|.+.++|.+|++ +++..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 7777766 8999999999999999999998 8999999998865
No 115
>KOG0128|consensus
Probab=99.15 E-value=2.7e-12 Score=127.11 Aligned_cols=148 Identities=22% Similarity=0.310 Sum_probs=128.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~ 239 (398)
...++||+||+..+.+.+|...|..+|.+..+++..-+..++.+|+|||+|.+.+++.+|+.+....+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 5678999999999999999999999998888877755567889999999999999999999865555555
Q ss_pred CCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCE
Q psy6490 240 KNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNK 318 (398)
Q Consensus 240 ~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~ 318 (398)
...|+|+|+|+..|.++|+.+|.++|.+.+.+++.. ..|+.+|.|||.|.++..+ ++..+++...++-+
T Consensus 736 ---------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 736 ---------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred ---------hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 345999999999999999999999999999997777 5799999999999996555 55667888888888
Q ss_pred EEEEEecCc
Q psy6490 319 KVECKKAQP 327 (398)
Q Consensus 319 ~i~v~~a~~ 327 (398)
.+.|..+.+
T Consensus 806 ~~~v~vsnp 814 (881)
T KOG0128|consen 806 NGEVQVSNP 814 (881)
T ss_pred CccccccCC
Confidence 888888766
No 116
>KOG0132|consensus
Probab=99.09 E-value=2.4e-10 Score=112.29 Aligned_cols=80 Identities=15% Similarity=0.419 Sum_probs=71.0
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH-HHHHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a-~~~l~~~~i~g~~i~v~~a 325 (398)
..++||||++|+..++|.||+.+|+.||.|.+|+++.. +|||||.+.+..+|++ +.+|++..+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 35789999999999999999999999999999988655 8899999999766655 4589999999999999999
Q ss_pred CchHHHh
Q psy6490 326 QPKEAVQ 332 (398)
Q Consensus 326 ~~k~~~~ 332 (398)
..+..+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 9887665
No 117
>KOG1456|consensus
Probab=99.07 E-value=4.4e-09 Score=95.25 Aligned_cols=166 Identities=16% Similarity=0.251 Sum_probs=125.6
Q ss_pred CCCCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 156 GDDPTSAKLFVGGLSWQ-TSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~-~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
....+...+.|.+|... ++-+.|.++|-.||.|+.|++++.+ .|-|.|++.+...+++|+. +++..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34457899999999765 7779999999999999999999986 6789999999999999998 888888899888
Q ss_pred CCCCCCCCC----------------------------------CccCccccceeecCCCCCCCHHHHHHHHhhcCC-eeE
Q psy6490 234 PKHATPKNR----------------------------------PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGK-VEE 278 (398)
Q Consensus 234 v~~~~~~~~----------------------------------~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~-i~~ 278 (398)
+..++-... .....++++|..-|.|..+|||.|.++|...+. -.+
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 765543110 011225667999999999999999999987553 344
Q ss_pred EEEeecCCCCCcceEEEEEeCCH-HHHHHHHHHCCceeCCE------EEEEEecCch
Q psy6490 279 TVMLMDQQTKRHRGFGFVTFENE-EVVDHICEIHFHMIKNK------KVECKKAQPK 328 (398)
Q Consensus 279 v~i~~~~~~~~~kg~afV~F~~~-eaa~a~~~l~~~~i~g~------~i~v~~a~~k 328 (398)
++|..-+ +.++ .-++++|++. ++.+++..+|...|.+. .+++.|+.++
T Consensus 437 vkvFp~k-serS-ssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 437 VKVFPLK-SERS-SSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred EEeeccc-cccc-ccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 5665443 3332 3579999995 56677888888888753 3555555443
No 118
>KOG4206|consensus
Probab=99.07 E-value=3.4e-10 Score=96.37 Aligned_cols=84 Identities=23% Similarity=0.413 Sum_probs=71.9
Q ss_pred ccccceeecCCCCCCCHHHHHH----HHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKA----YFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNKKVE 321 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~----~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~~i~ 321 (398)
..+.||||.||++.+..++|++ +|+.||.|.+|... .+.+.||-|||.|.+.++| .++..|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999998 99999999988776 3577899999999997666 45557999999999999
Q ss_pred EEecCchHHHhh
Q psy6490 322 CKKAQPKEAVQA 333 (398)
Q Consensus 322 v~~a~~k~~~~~ 333 (398)
|.||..+.+...
T Consensus 84 iqyA~s~sdii~ 95 (221)
T KOG4206|consen 84 IQYAKSDSDIIA 95 (221)
T ss_pred eecccCccchhh
Confidence 999988776544
No 119
>KOG0132|consensus
Probab=99.07 E-value=1.7e-10 Score=113.35 Aligned_cols=109 Identities=20% Similarity=0.333 Sum_probs=88.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
..-++|||||+|+..++|.||.++|+.||+|.+|.++.. +|+|||.+.+..+|++|+. +....+.++.|++.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 345799999999999999999999999999999999875 8899999999999999997 888889999999999
Q ss_pred CCCCCCCccCcccc--ceeecCCCCCCCHHHHHHHHhh
Q psy6490 237 ATPKNRPKIGNRTK--KIFVGGVSQDTSAEEVKAYFSQ 272 (398)
Q Consensus 237 ~~~~~~~~~~~~~~--~l~V~nLp~~~tee~L~~~F~~ 272 (398)
+..+..+.+..... .+=|.-||++.-.+||+.+++.
T Consensus 492 a~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 492 AVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred eccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhhh
Confidence 98776654222221 2356667776555556666654
No 120
>KOG0112|consensus
Probab=99.03 E-value=2.9e-10 Score=113.43 Aligned_cols=163 Identities=14% Similarity=0.255 Sum_probs=126.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 155 TGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 155 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
..+...+++||+|||...+++.+|+..|..+|.|.+|.|..-+. +.-..|+||.|.+...+-.+.- +.+..|..-.+.
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 34455889999999999999999999999999999999977642 3334599999999888777743 444444333333
Q ss_pred CCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCC
Q psy6490 234 PKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHF 312 (398)
Q Consensus 234 v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~ 312 (398)
+..... .....+.+++++|...+....|...|..||.|..|.+- .| .-||+|.|++..++.+++ .|.|
T Consensus 445 ~glG~~-----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hg--q~yayi~yes~~~aq~a~~~~rg 513 (975)
T KOG0112|consen 445 IGLGQP-----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HG--QPYAYIQYESPPAAQAATHDMRG 513 (975)
T ss_pred cccccc-----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cC--CcceeeecccCccchhhHHHHhc
Confidence 333322 34567889999999999999999999999999986653 33 349999999988776665 6899
Q ss_pred ceeCC--EEEEEEecCchH
Q psy6490 313 HMIKN--KKVECKKAQPKE 329 (398)
Q Consensus 313 ~~i~g--~~i~v~~a~~k~ 329 (398)
..|+| +.+.|.++..-.
T Consensus 514 ap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 514 APLGGPPRRLRVDLASPPG 532 (975)
T ss_pred CcCCCCCcccccccccCCC
Confidence 98875 679999887644
No 121
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=3.2e-10 Score=77.69 Aligned_cols=55 Identities=31% Similarity=0.593 Sum_probs=48.8
Q ss_pred HHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 178 LREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 178 L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
|+++|++||+|.++.+..++ +++|||+|.+.++|++|++ +++..++|++|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998764 6899999999999999998 8999999999988753
No 122
>KOG4208|consensus
Probab=99.00 E-value=7.3e-10 Score=92.83 Aligned_cols=84 Identities=18% Similarity=0.336 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMF-GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~-G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
.......+||+.+|..+.+.+|..+|..+ |.+..+++.|++.||.|||||||+|++++.|+-|-+ ||+..|.++.|.+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34467899999999999999999999998 788888998999999999999999999999999988 8888898888877
Q ss_pred CCCCCC
Q psy6490 235 KHATPK 240 (398)
Q Consensus 235 ~~~~~~ 240 (398)
....+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 766544
No 123
>KOG0153|consensus
Probab=98.95 E-value=1.5e-09 Score=97.55 Aligned_cols=80 Identities=24% Similarity=0.503 Sum_probs=72.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh--CCCcccCCcc
Q psy6490 154 PTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK--VPIHTLDGKK 231 (398)
Q Consensus 154 ~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~--~~~~~~~g~~ 231 (398)
...++....+|||++|-..++|.+|+++|.+||+|+++.+... +++|||+|.+.++|+.|.+ ++...++|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3345567899999999999999999999999999999999876 6799999999999999987 6778899999
Q ss_pred cCCCCCCC
Q psy6490 232 IDPKHATP 239 (398)
Q Consensus 232 l~v~~~~~ 239 (398)
|.|.|...
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999987
No 124
>KOG0415|consensus
Probab=98.95 E-value=8.4e-10 Score=99.14 Aligned_cols=82 Identities=27% Similarity=0.429 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHH-hCCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVL-KVPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al-~~~~~~~~g~~l~v~~ 236 (398)
.++.+.|||-.|.+-+|+++|.-+|+.||.|.+|.+++|..||.+..||||+|++.+++++|. +|.+..|++++|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 447899999999999999999999999999999999999999999999999999999999996 5899999999998876
Q ss_pred CCC
Q psy6490 237 ATP 239 (398)
Q Consensus 237 ~~~ 239 (398)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 543
No 125
>KOG0116|consensus
Probab=98.90 E-value=3.4e-09 Score=100.76 Aligned_cols=81 Identities=27% Similarity=0.438 Sum_probs=70.7
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCch
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~k 328 (398)
..+|||+|||.++++++|+++|..||.|+...|......++..+||||+|++.++++.+++.+-..|+++++.|+--++.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 34599999999999999999999999999998877654455558999999999999999999999999999999876653
Q ss_pred H
Q psy6490 329 E 329 (398)
Q Consensus 329 ~ 329 (398)
-
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 126
>KOG0226|consensus
Probab=98.88 E-value=1.5e-09 Score=93.52 Aligned_cols=87 Identities=20% Similarity=0.416 Sum_probs=78.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 155 TGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 155 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
.+.+..+.+||.|.|..+++++.|-..|.+|-.....++++|+.||+++||+||.|.+.+++.+|++ +++.+++.+.|.
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 3456678999999999999999999999999999999999999999999999999999999999998 899999999988
Q ss_pred CCCCCCCC
Q psy6490 234 PKHATPKN 241 (398)
Q Consensus 234 v~~~~~~~ 241 (398)
++.+..+.
T Consensus 264 lRkS~wke 271 (290)
T KOG0226|consen 264 LRKSEWKE 271 (290)
T ss_pred hhhhhHHh
Confidence 77665444
No 127
>KOG4661|consensus
Probab=98.88 E-value=5.6e-09 Score=99.29 Aligned_cols=81 Identities=23% Similarity=0.459 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
-.++|||.+|...+...+|+.+|++||+|+..+++.+..+-..++|+||++.+.++|.+||+ ++...|.|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 56899999999999999999999999999999999988777789999999999999999998 89999999999998876
Q ss_pred CC
Q psy6490 239 PK 240 (398)
Q Consensus 239 ~~ 240 (398)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 53
No 128
>KOG4660|consensus
Probab=98.82 E-value=4.9e-09 Score=100.02 Aligned_cols=159 Identities=20% Similarity=0.203 Sum_probs=111.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
..+...++|+|-|||.+|++++|+.+|+.||+|++|+.... .+|..||+|.|..+|++|++ ++...+.|+.|..
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 44557899999999999999999999999999999877555 48999999999999999998 8899999998873
Q ss_pred CCCCCCCCCc-------------------cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEE
Q psy6490 235 KHATPKNRPK-------------------IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGF 295 (398)
Q Consensus 235 ~~~~~~~~~~-------------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~af 295 (398)
.........- .......+|+ .|....+..-++..|.-+|.+.. +. ++.-+-.-|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~ 217 (549)
T KOG4660|consen 145 PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRF 217 (549)
T ss_pred CCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cc-----ccchhhhhh
Confidence 2222111100 0001112333 38888888777778888888775 32 232233567
Q ss_pred EEeCCHHHH-HHHHHHCCceeCCEEEEEEecCc
Q psy6490 296 VTFENEEVV-DHICEIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 296 V~F~~~eaa-~a~~~l~~~~i~g~~i~v~~a~~ 327 (398)
++|.+..++ .+...+ |..+.+....+.++.+
T Consensus 218 ~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 218 VEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 888774444 333333 7778887777777665
No 129
>KOG4307|consensus
Probab=98.79 E-value=1.3e-08 Score=99.11 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=64.5
Q ss_pred ceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCEEEEEEe
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~~i~v~~ 324 (398)
.|-+.|+|++++-|||.+||..|-.+-.-++++..+.|+..|.|.|-|++.|.| .|.+.++++.|..|+|+|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 488999999999999999999998877666667668899999999999996555 55668999999999999875
No 130
>KOG0533|consensus
Probab=98.79 E-value=2.2e-08 Score=88.30 Aligned_cols=85 Identities=14% Similarity=0.281 Sum_probs=72.7
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH-HHHHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a-~~~l~~~~i~g~~i~v~~ 324 (398)
.....+|+|.||++.++++||+++|..||.++.+.+..| ..|.+.|.|-|.|+..++|.+ +..+++..++|+.|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344578999999999999999999999999999988888 589999999999999766655 557999999999999988
Q ss_pred cCchHHH
Q psy6490 325 AQPKEAV 331 (398)
Q Consensus 325 a~~k~~~ 331 (398)
..+....
T Consensus 159 i~~~~~~ 165 (243)
T KOG0533|consen 159 ISSPSQS 165 (243)
T ss_pred ecCcccc
Confidence 7654433
No 131
>KOG0116|consensus
Probab=98.75 E-value=1.6e-08 Score=96.19 Aligned_cols=82 Identities=21% Similarity=0.396 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~ 239 (398)
...+|||+|||.++++++|+++|..||.|+...|......++..+||||+|.+.+++..+|..+...+++++|.|+....
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 44559999999999999999999999999999887765445555999999999999999999888899999998877655
Q ss_pred CC
Q psy6490 240 KN 241 (398)
Q Consensus 240 ~~ 241 (398)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 33
No 132
>KOG4661|consensus
Probab=98.75 E-value=2.6e-08 Score=94.85 Aligned_cols=81 Identities=25% Similarity=0.465 Sum_probs=71.7
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~~i~v~~a~ 326 (398)
..+.|||.+|...+...||+.+|++||.|+-.+|+.+..+--.++|+||++.+.+.| +.|..||.+.|.||.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 456899999999999999999999999999999999877777899999999996555 5555799999999999999987
Q ss_pred ch
Q psy6490 327 PK 328 (398)
Q Consensus 327 ~k 328 (398)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 63
No 133
>KOG4209|consensus
Probab=98.71 E-value=1.6e-08 Score=89.40 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=76.6
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
....+.+||+|+.+.+|.+++..+|+.||.|..+.|..|+.++.+|||+||+|.+.+.+..++.|++..|.|+.|+|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 34567899999999999999999999999999999999999999999999999999999888889999999999999987
Q ss_pred Cch
Q psy6490 326 QPK 328 (398)
Q Consensus 326 ~~k 328 (398)
+..
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 654
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.69 E-value=1.4e-07 Score=71.12 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=67.6
Q ss_pred cceeecCCCCCCCHHHHHHHHhh--cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC----CEEEEE
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQ--FGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK----NKKVEC 322 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~--~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~----g~~i~v 322 (398)
+||.|+|||...|.++|.+++.. .|...-+.+..|..++.+.|||||.|.+.+++.... .++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999986 477788888899889999999999999988877755 68998875 677889
Q ss_pred EecCch
Q psy6490 323 KKAQPK 328 (398)
Q Consensus 323 ~~a~~k 328 (398)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 988643
No 135
>KOG4209|consensus
Probab=98.66 E-value=2.6e-08 Score=88.06 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~ 235 (398)
....+.+.+||+|+.+.+|.+++...|+.||.|..+.+..|+.++.+|||+||+|.+.+.++.++++++..+.|+.+.+.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCC
Q psy6490 236 HATPK 240 (398)
Q Consensus 236 ~~~~~ 240 (398)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 66543
No 136
>KOG1457|consensus
Probab=98.62 E-value=1.6e-07 Score=79.63 Aligned_cols=89 Identities=13% Similarity=0.251 Sum_probs=70.7
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC---CEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMD-QQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK---NKKVE 321 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~-~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~---g~~i~ 321 (398)
..-+||||.+||.++.-.||..+|..|-.-+.+.+... +.....+-+|||.|.+...|.+++ +|||.+|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999877776665433 222345679999999988777776 69999997 78899
Q ss_pred EEecCchHHHhhhh
Q psy6490 322 CKKAQPKEAVQANL 335 (398)
Q Consensus 322 v~~a~~k~~~~~~~ 335 (398)
|++++....+++..
T Consensus 112 iElAKSNtK~kr~k 125 (284)
T KOG1457|consen 112 IELAKSNTKRKRRK 125 (284)
T ss_pred eeehhcCcccccCC
Confidence 99988776665543
No 137
>KOG0533|consensus
Probab=98.60 E-value=1.1e-07 Score=83.96 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.+....+|+|.||++.++++||+++|..||.+..+-+-.++ +|.+.|.|-|.|...++|..|++ +++..++|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34456899999999999999999999999988888888876 89999999999999999999998 88888999998776
Q ss_pred CCCCC
Q psy6490 236 HATPK 240 (398)
Q Consensus 236 ~~~~~ 240 (398)
.....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 65543
No 138
>KOG1548|consensus
Probab=98.56 E-value=1.9e-07 Score=84.22 Aligned_cols=78 Identities=17% Similarity=0.327 Sum_probs=68.5
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCE
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEE--------TVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNK 318 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~--------v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~ 318 (398)
.+..|||.|||.++|.+++.++|++||.|.+ |++.++. .|..||-|++.|-..|++.-|+ -|++..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4567999999999999999999999998763 6788884 5999999999999988887666 5899999999
Q ss_pred EEEEEecC
Q psy6490 319 KVECKKAQ 326 (398)
Q Consensus 319 ~i~v~~a~ 326 (398)
.|+|..|+
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99999875
No 139
>KOG0128|consensus
Probab=98.46 E-value=2.4e-08 Score=99.70 Aligned_cols=158 Identities=17% Similarity=0.124 Sum_probs=123.1
Q ss_pred CCcEEEEcCCCCCCCHH-HHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSE-KLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~-~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~ 238 (398)
..+..++.++.....+. ..+..|..+|.|+.|++......-..--+.++.+....+++.+....+..+.++.+.+..+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCC
Confidence 45667788887777665 67888999999999988763222222238899999999999999888888999998888777
Q ss_pred CCCCCccC-------ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHC
Q psy6490 239 PKNRPKIG-------NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIH 311 (398)
Q Consensus 239 ~~~~~~~~-------~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~ 311 (398)
.+...... ....++||+||+..+.++||...|..+|.++.+.|.....+++.+|+|||.|...+.+.++++++
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 65532221 23457999999999999999999999999998888767778999999999999987777776654
Q ss_pred CceeCC
Q psy6490 312 FHMIKN 317 (398)
Q Consensus 312 ~~~i~g 317 (398)
...+.|
T Consensus 730 d~~~~g 735 (881)
T KOG0128|consen 730 DSCFFG 735 (881)
T ss_pred hhhhhh
Confidence 444333
No 140
>KOG4660|consensus
Probab=98.46 E-value=1.6e-07 Score=89.90 Aligned_cols=73 Identities=18% Similarity=0.295 Sum_probs=62.0
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCEEEE
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNKKVE 321 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~~i~ 321 (398)
......++|+|-|||.++++++|+.+|+.||+|+.|+. +-..+|.+||+|-|...| .|+.+|++.+|.|+.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 33557789999999999999999999999999998654 444589999999996555 45568999999999998
No 141
>KOG4676|consensus
Probab=98.45 E-value=8.2e-08 Score=87.70 Aligned_cols=159 Identities=12% Similarity=0.137 Sum_probs=118.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCC---CCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPIT---QRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 161 ~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~---~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
...|.|.||...+|.+.++.||...|+|.+++|..+..+ ......|||.|.+...+..|-.|.+.++-++-|.|...
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 348999999999999999999999999999999764322 22445899999999998888766666666665544332
Q ss_pred CCCCCC-----------------------------------------------------ccCccccceeecCCCCCCCHH
Q psy6490 238 TPKNRP-----------------------------------------------------KIGNRTKKIFVGGVSQDTSAE 264 (398)
Q Consensus 238 ~~~~~~-----------------------------------------------------~~~~~~~~l~V~nLp~~~tee 264 (398)
.....+ ...+-.++++|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 221000 001123579999999999999
Q ss_pred HHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEE
Q psy6490 265 EVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECK 323 (398)
Q Consensus 265 ~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~ 323 (398)
++.+.|..+|+|.+..+. .+...-+|.|+|......+-++.++|..+.-...++.
T Consensus 167 e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~~gre~k~qhsr~a 221 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRSHGRERKRQHSRRA 221 (479)
T ss_pred hhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHhcchhhhhhhhhhh
Confidence 999999999999977653 3333558889999888888889999988774443333
No 142
>KOG0106|consensus
Probab=98.44 E-value=1.8e-07 Score=80.71 Aligned_cols=71 Identities=23% Similarity=0.542 Sum_probs=62.2
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCEEEEEEecCch
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~~i~v~~a~~k 328 (398)
..|||++|++.+.+.||.++|.+||.|.++.+. .||+||+|++.-+| .++..+|++.|.|..+.|.|++.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 368999999999999999999999999988763 46999999996555 556689999999999999999864
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.43 E-value=1.3e-06 Score=66.04 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=54.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMF--GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~--G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
+||.|+|||...|.++|.+++... |...-+.+..|..++.+.|||||.|.+.+.+.+..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~ 63 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYK 63 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHH
Confidence 699999999999999999988643 567778888898899999999999999999999876
No 144
>KOG2193|consensus
Probab=98.41 E-value=2.3e-08 Score=92.01 Aligned_cols=151 Identities=21% Similarity=0.382 Sum_probs=116.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCC-cccCCcccCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMF--GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPI-HTLDGKKIDPKHA 237 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~--G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~-~~~~g~~l~v~~~ 237 (398)
..+|++||...++.++|+.+|... +.-..+ ++ -.||+||.+.+...+.++++ +++ ..+.|+++.+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-ee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 468999999999999999999754 211122 11 25799999999999999998 444 4489999999888
Q ss_pred CCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEee-cCCCCCcceEEEEEeCCHHHHH-HHHHHCCcee
Q psy6490 238 TPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLM-DQQTKRHRGFGFVTFENEEVVD-HICEIHFHMI 315 (398)
Q Consensus 238 ~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~-~~~~~~~kg~afV~F~~~eaa~-a~~~l~~~~i 315 (398)
..+.. .++++-|+|+|....++.|..++..||.++.|..+. |.++- ..-|+|.+.+.++ ++..++|..+
T Consensus 74 v~kkq-----rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 74 VPKKQ-----RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred hhHHH-----HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHh
Confidence 76654 466799999999999999999999999999987643 32221 2236777766554 4557999999
Q ss_pred CCEEEEEEecCchH
Q psy6490 316 KNKKVECKKAQPKE 329 (398)
Q Consensus 316 ~g~~i~v~~a~~k~ 329 (398)
....++|.|--...
T Consensus 145 en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 145 ENQHLKVGYIPDEQ 158 (584)
T ss_pred hhhhhhcccCchhh
Confidence 99999999865443
No 145
>KOG4454|consensus
Probab=98.39 E-value=1.6e-07 Score=79.41 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=66.9
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~~a 325 (398)
+..++|||.|+...++||-|.++|-.-|.|.+|.|..++ .++.| ||||.|+++-++.-+++ +||..+.++.+.|.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 456899999999999999999999999999999887774 56666 99999999887766664 7999999999888874
Q ss_pred C
Q psy6490 326 Q 326 (398)
Q Consensus 326 ~ 326 (398)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 3
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.26 E-value=3e-06 Score=60.85 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=47.2
Q ss_pred cEEEEcCCCCCCCHHHH----HHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 162 AKLFVGGLSWQTSSEKL----REYFGMFG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L----~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
..|||.|||.+.+...| +.+++.|| +|.+| +.+.|+|.|.+.+.|++|.+ +++..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 57999999999887765 56677887 66665 24679999999999999998 88999999999998
Q ss_pred CCCCC
Q psy6490 236 HATPK 240 (398)
Q Consensus 236 ~~~~~ 240 (398)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 147
>KOG0151|consensus
Probab=98.21 E-value=3.2e-06 Score=82.99 Aligned_cols=82 Identities=27% Similarity=0.420 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCC---CCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDP---ITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~---~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
+..+++|||+||+..++++.|...|..||.|.+++|+.-+ ...+.+.++||-|-+..++++|++ +++..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 5688999999999999999999999999999999998643 223456799999999999999998 899999999998
Q ss_pred CCCCCC
Q psy6490 234 PKHATP 239 (398)
Q Consensus 234 v~~~~~ 239 (398)
+.|.+.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 888754
No 148
>KOG0151|consensus
Probab=98.19 E-value=2.5e-06 Score=83.73 Aligned_cols=81 Identities=17% Similarity=0.370 Sum_probs=69.0
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecC---CCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQ---QTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVEC 322 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~---~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v 322 (398)
..++.|||+||+..++++.|...|..||.|..++|+.-. +..+.+.|+||-|-+..++++++ +|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 346789999999999999999999999999999987532 33455779999999977776665 79999999999999
Q ss_pred EecCc
Q psy6490 323 KKAQP 327 (398)
Q Consensus 323 ~~a~~ 327 (398)
.|++.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99843
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.12 E-value=5.5e-06 Score=64.11 Aligned_cols=75 Identities=28% Similarity=0.326 Sum_probs=44.8
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH---HC---CceeCCEEEEEE
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE---IH---FHMIKNKKVECK 323 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~---l~---~~~i~g~~i~v~ 323 (398)
..|+|.+++..++.++|+++|+.||.|.+|.+.+. ...|||+|.+.++|+++++ .. +..|.+..+++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 45889999999999999999999999999888654 2378999999887877664 23 567788888877
Q ss_pred ecCchHH
Q psy6490 324 KAQPKEA 330 (398)
Q Consensus 324 ~a~~k~~ 330 (398)
.-...++
T Consensus 76 vLeGeeE 82 (105)
T PF08777_consen 76 VLEGEEE 82 (105)
T ss_dssp ---HHHH
T ss_pred ECCCHHH
Confidence 7555443
No 150
>KOG1995|consensus
Probab=98.01 E-value=4.9e-06 Score=75.94 Aligned_cols=85 Identities=15% Similarity=0.247 Sum_probs=74.5
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEE--------TVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK 316 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~--------v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~ 316 (398)
.....+|||-+|+..+++++|.++|..+|.|+. |.|.+|++|+.+||-|.|.|+|..+|++++ .++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345668999999999999999999999998863 667889999999999999999988888876 58999999
Q ss_pred CEEEEEEecCchHH
Q psy6490 317 NKKVECKKAQPKEA 330 (398)
Q Consensus 317 g~~i~v~~a~~k~~ 330 (398)
+..|+|.++..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999876653
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.89 E-value=5.1e-05 Score=54.63 Aligned_cols=68 Identities=12% Similarity=0.225 Sum_probs=43.8
Q ss_pred cceeecCCCCCCCHHH----HHHHHhhcCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 250 KKIFVGGVSQDTSAEE----VKAYFSQFGK-VEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~----L~~~F~~~G~-i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
..|+|.|||.+.+... |+.++..+|. |..|. .+.|+|+|.+.|.|++++ .|+|..+-|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4589999999988765 5566667874 44431 468999999988776655 799999999999999
Q ss_pred ecCc
Q psy6490 324 KAQP 327 (398)
Q Consensus 324 ~a~~ 327 (398)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9743
No 152
>KOG4849|consensus
Probab=97.88 E-value=1e-05 Score=73.08 Aligned_cols=79 Identities=18% Similarity=0.401 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFG--AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
+....++|||||-+++|++||.+.+...| .+.++++..++.+|.+||||+|...+..++++.++ +-..+|+|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 44678999999999999999999998888 68889999999999999999999999999999998 5666788776544
Q ss_pred CC
Q psy6490 235 KH 236 (398)
Q Consensus 235 ~~ 236 (398)
..
T Consensus 157 ~~ 158 (498)
T KOG4849|consen 157 LS 158 (498)
T ss_pred ec
Confidence 33
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.81 E-value=5e-05 Score=68.49 Aligned_cols=80 Identities=20% Similarity=0.433 Sum_probs=60.3
Q ss_pred ccceeecCCCCCCCHHHH------HHHHhhcCCeeEEEEeecCCCCCc-ceE--EEEEeCC-HHHHHHHHHHCCceeCCE
Q psy6490 249 TKKIFVGGVSQDTSAEEV------KAYFSQFGKVEETVMLMDQQTKRH-RGF--GFVTFEN-EEVVDHICEIHFHMIKNK 318 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L------~~~F~~~G~i~~v~i~~~~~~~~~-kg~--afV~F~~-~eaa~a~~~l~~~~i~g~ 318 (398)
..-+||-+|+..+-.|++ .++|..||.|..|.|-+......+ .+. .||.|.+ +|+|+.+.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 345899999998877762 479999999998887665322211 222 3999999 556666778999999999
Q ss_pred EEEEEecCch
Q psy6490 319 KVECKKAQPK 328 (398)
Q Consensus 319 ~i~v~~a~~k 328 (398)
.|+..+...|
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987764
No 154
>KOG1855|consensus
Probab=97.76 E-value=2.4e-05 Score=72.80 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=54.8
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeec---CCC--CCc--------ceEEEEEeCCHHHHHHHHHHCC
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMD---QQT--KRH--------RGFGFVTFENEEVVDHICEIHF 312 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~---~~~--~~~--------kg~afV~F~~~eaa~a~~~l~~ 312 (398)
-..++|.+.|||.+-.-|.|.++|+.+|.|+.|+|+.- ..+ +.+ +-||||+|+..++|+++.++.+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 46889999999999999999999999999999999875 222 222 4579999999999988887653
No 155
>KOG4210|consensus
Probab=97.76 E-value=2.4e-05 Score=71.78 Aligned_cols=83 Identities=23% Similarity=0.476 Sum_probs=73.6
Q ss_pred CCcEEE-EcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCC
Q psy6490 160 TSAKLF-VGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~-v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~ 238 (398)
...++| |++|+.++++++|+..|..+|.|..+++..+..++.++||+||.|.+..+...++......+.++.+.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 445566 9999999999999999999999999999999999999999999999999999998876677888888888776
Q ss_pred CCCC
Q psy6490 239 PKNR 242 (398)
Q Consensus 239 ~~~~ 242 (398)
....
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 6543
No 156
>KOG1995|consensus
Probab=97.73 E-value=6.4e-05 Score=68.78 Aligned_cols=84 Identities=15% Similarity=0.293 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEE--------EEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVT--------DVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLD 228 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~ 228 (398)
.....+|||-+|+..+++++|.++|.+||.|. .|+|-+|+.|++.||-|.|.|.+...|+.|+. +++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44778999999999999999999999999875 36777889999999999999999999999998 7888898
Q ss_pred CcccCCCCCCCCC
Q psy6490 229 GKKIDPKHATPKN 241 (398)
Q Consensus 229 g~~l~v~~~~~~~ 241 (398)
+..|.|..+..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 8888887766544
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.67 E-value=5.8e-05 Score=68.08 Aligned_cols=111 Identities=18% Similarity=0.356 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHH------HHHHhcCCCEEEEEEeeCCCCCC-cccE--EEEEEcChHhHHHHHh-CCCcccCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKL------REYFGMFGAVTDVLIMKDPITQR-SRGF--GFITFAEPETVEKVLK-VPIHTLDG 229 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L------~~~f~~~G~i~~~~~~~~~~~~~-~~g~--afV~f~~~e~a~~al~-~~~~~~~g 229 (398)
...-+||-+|+..+-.+++ .++|.+||.|..|.+.+...+.. ..+. .||.|.+.|+|.+||. .++..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 5577999999999887773 47899999999988766542111 1122 4999999999999998 89999999
Q ss_pred cccCCCCCCCCC-----CCccCccccceeecCCC---CCCCHHHHHHHH
Q psy6490 230 KKIDPKHATPKN-----RPKIGNRTKKIFVGGVS---QDTSAEEVKAYF 270 (398)
Q Consensus 230 ~~l~v~~~~~~~-----~~~~~~~~~~l~V~nLp---~~~tee~L~~~F 270 (398)
|-|+..+...+- +........++|+.--. +..|++||-..=
T Consensus 193 r~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred ceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 999888776432 11222233445544332 246777775543
No 158
>KOG4849|consensus
Probab=97.64 E-value=3.6e-05 Score=69.69 Aligned_cols=78 Identities=12% Similarity=0.255 Sum_probs=65.6
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEEe
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFG--KVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECKK 324 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G--~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~~ 324 (398)
+..++||+||-+.+|++||.+.+...| .+.+++++.++.+|.+||||+|...++.+.+..++ |-.+.|.|..-.|--
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345799999999999999999998766 47778888888899999999999999999999887 567778887666654
Q ss_pred c
Q psy6490 325 A 325 (398)
Q Consensus 325 a 325 (398)
+
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 4
No 159
>KOG1996|consensus
Probab=97.63 E-value=0.00018 Score=63.83 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=58.1
Q ss_pred ceeecCC--CCCCC---HHHHHHHHhhcCCeeEEEEeecCCCCC-cceEEEEEeCCH-HHHHHHHHHCCceeCCEEEEEE
Q psy6490 251 KIFVGGV--SQDTS---AEEVKAYFSQFGKVEETVMLMDQQTKR-HRGFGFVTFENE-EVVDHICEIHFHMIKNKKVECK 323 (398)
Q Consensus 251 ~l~V~nL--p~~~t---ee~L~~~F~~~G~i~~v~i~~~~~~~~-~kg~afV~F~~~-eaa~a~~~l~~~~i~g~~i~v~ 323 (398)
.|.++|+ +..++ ++++++.+++||.|.+|.|+.+..--. ..--.||+|++. ++.+|+..|||.+|+||.++..
T Consensus 283 vlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 283 VLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 3555554 22333 468899999999999999887642211 123579999995 5667888999999999999999
Q ss_pred ecCchHH
Q psy6490 324 KAQPKEA 330 (398)
Q Consensus 324 ~a~~k~~ 330 (398)
|......
T Consensus 363 Fyn~ekf 369 (378)
T KOG1996|consen 363 FYNLEKF 369 (378)
T ss_pred eccHHhh
Confidence 8765443
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.62 E-value=0.00018 Score=54.79 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=53.5
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEe-ecC------CCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEE-
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVML-MDQ------QTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKK- 319 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~-~~~------~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~- 319 (398)
..+.|.|-+.|.. ....|.++|++||.|.+..-. ++. .......+..|+|++..+|.+|+..||..|+|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4566888898888 566788899999999876411 110 0012256999999999999999999999999864
Q ss_pred EEEEecCc
Q psy6490 320 VECKKAQP 327 (398)
Q Consensus 320 i~v~~a~~ 327 (398)
+-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55777743
No 161
>KOG3152|consensus
Probab=97.53 E-value=5e-05 Score=66.14 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=59.2
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC--------CCcce----EEEEEeCCHHHHHHHH-HHCCce
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQT--------KRHRG----FGFVTFENEEVVDHIC-EIHFHM 314 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~--------~~~kg----~afV~F~~~eaa~a~~-~l~~~~ 314 (398)
....||+++||..++-..|+++|+.||.|-+|.+-....+ |.+++ .|+|+|.+...|+.+. .||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999998776544 22222 2679999988887765 689999
Q ss_pred eCCEE
Q psy6490 315 IKNKK 319 (398)
Q Consensus 315 i~g~~ 319 (398)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.51 E-value=0.00026 Score=47.35 Aligned_cols=52 Identities=23% Similarity=0.447 Sum_probs=42.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHH
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVL 220 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al 220 (398)
+.|-|.+.+.+..+. +++.|..||+|.++.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 578889998777755 555888999999988862 2458999999999999985
No 163
>KOG3152|consensus
Probab=97.49 E-value=7.4e-05 Score=65.12 Aligned_cols=73 Identities=15% Similarity=0.318 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCC--------CCcccE----EEEEEcChHhHHHHHh-CCCcc
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPIT--------QRSRGF----GFITFAEPETVEKVLK-VPIHT 226 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~--------~~~~g~----afV~f~~~e~a~~al~-~~~~~ 226 (398)
.+..||+++||+.++-.-|+++|+.||.|-.|.+.....+ |.++++ |+|+|.+...|+++.. +|+.-
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999999999876554 333322 8899999999999877 78888
Q ss_pred cCCccc
Q psy6490 227 LDGKKI 232 (398)
Q Consensus 227 ~~g~~l 232 (398)
|+|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 888753
No 164
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.41 E-value=0.00035 Score=54.10 Aligned_cols=54 Identities=33% Similarity=0.510 Sum_probs=36.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
..|+|.++...++.++|+++|+.||.|..|.+.+. ...|||.|.+.++|++|++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHH
Confidence 46889999999999999999999999999888664 2379999999999999987
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.35 E-value=0.00063 Score=51.82 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=50.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCC-------CCCCcccEEEEEEcChHhHHHHHhCCCcccCCccc
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDP-------ITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKI 232 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~-------~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l 232 (398)
..+.|.|-+.|.+ ....|.+.|++||.|.+..-..+. .......+-.|.|.++.+|.+||..|+..++|.-+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 5577889999988 556688899999999887511100 00113568999999999999999999999988644
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.34 E-value=0.00043 Score=46.30 Aligned_cols=52 Identities=19% Similarity=0.376 Sum_probs=39.8
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
+.|-|.+.+.+.. ++|+++|..||+|.++.+- ....+.||+|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 5678888887765 4556689999999998774 22458999999988877653
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.31 E-value=0.001 Score=53.82 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCch
Q psy6490 264 EEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 264 e~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~k 328 (398)
.+|.+.|..||+|.=+|++-+ .-+|+|.+-++|.+++.++|..++|+.|+|+...+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 367788889999887776544 569999999999999999999999999999986653
No 168
>KOG2314|consensus
Probab=97.30 E-value=0.00051 Score=66.32 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=57.1
Q ss_pred CCCCCCCCcEEEEcCCCCCC--CHH----HHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcc
Q psy6490 154 PTGDDPTSAKLFVGGLSWQT--SSE----KLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHT 226 (398)
Q Consensus 154 ~~~~~~~~~~l~v~nLp~~~--t~~----~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~ 226 (398)
+..++.-...|+|.|+|--- .-+ -|..+|+++|+|.++.+..+..+| ++||.|++|.+..+|+.|++ +++..
T Consensus 51 p~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ 129 (698)
T KOG2314|consen 51 PVTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKR 129 (698)
T ss_pred cCccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccce
Confidence 33445677899999998532 222 356789999999999999887655 99999999999999999998 45544
Q ss_pred c
Q psy6490 227 L 227 (398)
Q Consensus 227 ~ 227 (398)
|
T Consensus 130 l 130 (698)
T KOG2314|consen 130 L 130 (698)
T ss_pred e
Confidence 4
No 169
>KOG0115|consensus
Probab=97.29 E-value=0.00027 Score=61.74 Aligned_cols=92 Identities=16% Similarity=0.241 Sum_probs=70.5
Q ss_pred CCCcccCCcccCCCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCH
Q psy6490 222 VPIHTLDGKKIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENE 301 (398)
Q Consensus 222 ~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~ 301 (398)
+++....|+.++|.++.. ..|||.||...++.|.|.+.|+.||.|+...++.| ..++..+-++|+|...
T Consensus 14 Ld~~~~~~~~lr~rfa~~----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k 82 (275)
T KOG0115|consen 14 LDGRFPKGRSLRVRFAMH----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKK 82 (275)
T ss_pred cCCCCCCCCceEEEeecc----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcc
Confidence 557778888898888863 45999999999999999999999999999888888 4688889999999985
Q ss_pred HHHHHHHH-H--C--CceeCCEEEEEEe
Q psy6490 302 EVVDHICE-I--H--FHMIKNKKVECKK 324 (398)
Q Consensus 302 eaa~a~~~-l--~--~~~i~g~~i~v~~ 324 (398)
-.+.+++. . . +....++.+-|..
T Consensus 83 ~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 83 PNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred hhHHHHHHHhccCccccCCCCCccCCCh
Confidence 55544443 2 1 2233455555544
No 170
>KOG0129|consensus
Probab=97.27 E-value=0.00099 Score=63.93 Aligned_cols=64 Identities=30% Similarity=0.445 Sum_probs=59.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFG-MFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~-~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
-+..+|||||+||.-++.++|-.+|+ -||.|..+-|=.|.+-+-.||-|-|.|.+..+-.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 45789999999999999999999999 89999999998887778899999999999999999986
No 171
>KOG2314|consensus
Probab=97.15 E-value=0.0007 Score=65.42 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=58.0
Q ss_pred cccceeecCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeC-CEE
Q psy6490 248 RTKKIFVGGVSQDT------SAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIK-NKK 319 (398)
Q Consensus 248 ~~~~l~V~nLp~~~------tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~-g~~ 319 (398)
-...|+|.|+|--- -..-|.++|+++|+|..+.+..+.++| ++||.|++|.+...| +++.++||+.|+ ..+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 45678999988632 224567899999999999998886554 999999999996655 566789999986 455
Q ss_pred EEEEe
Q psy6490 320 VECKK 324 (398)
Q Consensus 320 i~v~~ 324 (398)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66654
No 172
>KOG1855|consensus
Probab=97.07 E-value=0.00068 Score=63.40 Aligned_cols=70 Identities=20% Similarity=0.326 Sum_probs=57.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeC---CCC--CCc--------ccEEEEEEcChHhHHHHHhC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKD---PIT--QRS--------RGFGFITFAEPETVEKVLKV 222 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~---~~~--~~~--------~g~afV~f~~~e~a~~al~~ 222 (398)
.++-.+++|.+-|||.+-..+.|.++|+.||.|..|+|..- ..+ +.. +-+|+|+|+..+.|.+|.++
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34458999999999999999999999999999999999865 222 222 45699999999999999985
Q ss_pred CCc
Q psy6490 223 PIH 225 (398)
Q Consensus 223 ~~~ 225 (398)
.+.
T Consensus 306 ~~~ 308 (484)
T KOG1855|consen 306 LNP 308 (484)
T ss_pred hch
Confidence 433
No 173
>KOG2202|consensus
Probab=96.79 E-value=0.00063 Score=59.63 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=50.0
Q ss_pred HHHHHHHh-hcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCch
Q psy6490 264 EEVKAYFS-QFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 264 e~L~~~F~-~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k 328 (398)
|||...|+ +||+|++++|..+ -.-.-+|=+||.|..+|+|++++ .||+.++.|+.|...++.-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 55666666 8999999876544 33445788999999988777665 69999999999999987543
No 174
>KOG2253|consensus
Probab=96.76 E-value=0.00079 Score=66.46 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
+..+|||+||...+..+-++.++..||-|.+++... |||++|.......+++. ++...++|.++.+....
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 557999999999999999999999999998886643 99999999999999987 56667888877665421
Q ss_pred CCCCC---------------ccCccccceeecCCCCCCCHHHHHHHHhhcCCee
Q psy6490 239 PKNRP---------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVE 277 (398)
Q Consensus 239 ~~~~~---------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~ 277 (398)
..... ......+-.+|.|++....+...+..|.--+...
T Consensus 110 q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~ 163 (668)
T KOG2253|consen 110 QTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAA 163 (668)
T ss_pred hhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhh
Confidence 11000 0011134467778877776666655555444333
No 175
>KOG4676|consensus
Probab=96.41 E-value=0.0046 Score=57.32 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=64.1
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecC
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQT---KRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~---~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~ 326 (398)
..|.|.||...+|.|.+..+|.-.|.|.++.++..... ....-.|||.|.|..++..+..|-++.+=|+-|.|..+-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 37899999999999999999999999999998763222 223458999999999999999998888888887776543
No 176
>KOG0112|consensus
Probab=96.36 E-value=0.0016 Score=66.33 Aligned_cols=80 Identities=24% Similarity=0.381 Sum_probs=65.0
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~~i~v~~a 325 (398)
..+++||++||+..+++.+|+..|..||.|.+|.|.+-. -+...-|+||.|.+.+++ .+..++.+..|..-.+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 356789999999999999999999999999999986553 233345999999997765 666789888888777777777
Q ss_pred Cc
Q psy6490 326 QP 327 (398)
Q Consensus 326 ~~ 327 (398)
.+
T Consensus 449 ~~ 450 (975)
T KOG0112|consen 449 QP 450 (975)
T ss_pred cc
Confidence 55
No 177
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.34 E-value=0.016 Score=42.01 Aligned_cols=54 Identities=17% Similarity=0.342 Sum_probs=38.8
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l 310 (398)
+....+|+ .|.++...||.++|+.||.|. |..+-| .-|||...+.+.++.++.+
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHH
Confidence 34455666 999999999999999999988 554444 2799999998888876653
No 178
>KOG1924|consensus
Probab=96.23 E-value=0.023 Score=57.44 Aligned_cols=8 Identities=13% Similarity=0.273 Sum_probs=4.0
Q ss_pred CCcEEEEc
Q psy6490 160 TSAKLFVG 167 (398)
Q Consensus 160 ~~~~l~v~ 167 (398)
...+.||+
T Consensus 640 s~~cFWvk 647 (1102)
T KOG1924|consen 640 SENCFWVK 647 (1102)
T ss_pred Cccceeee
Confidence 33455555
No 179
>KOG0115|consensus
Probab=96.21 E-value=0.015 Score=51.06 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=53.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
..|||.||..-++.+.|..-|+.||.|....++.|. .++..+-++|+|...-.+.+|++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHH
Confidence 789999999999999999999999999887777764 67778889999999999988886
No 180
>KOG2135|consensus
Probab=96.20 E-value=0.0087 Score=56.94 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=54.4
Q ss_pred ecCCCCCC-CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCchH
Q psy6490 254 VGGVSQDT-SAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 254 V~nLp~~~-tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~k~ 329 (398)
+.-.++.. |.++|..+|.+||+|..|-|-.. ---|.|+|.+...|-.+...++..|++|.|+|.|-++..
T Consensus 377 lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecCCc
Confidence 33334433 56899999999999999877433 236899999987776677779999999999999987644
No 181
>KOG1996|consensus
Probab=96.17 E-value=0.012 Score=52.56 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCEEEEEEeeCCCCCCc-ccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 176 EKLREYFGMFGAVTDVLIMKDPITQRS-RGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 176 ~~L~~~f~~~G~i~~~~~~~~~~~~~~-~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
+++++-+++||.|.+|.|..+..--.. .--.||+|...++|.+|+- +|+.+|+||.+...+.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 567888999999999988876432222 2248999999999999986 8999999998865544
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.09 E-value=0.01 Score=48.05 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=51.8
Q ss_pred CCcEEEEcCCC------CCCCH---HHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCc
Q psy6490 160 TSAKLFVGGLS------WQTSS---EKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGK 230 (398)
Q Consensus 160 ~~~~l~v~nLp------~~~t~---~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~ 230 (398)
...||.|.=+. ....+ .+|.+.|..||++.-+|++.+ .-+|+|.+-++|-+|+.+++..++|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCE
Confidence 55677666554 12332 357778899999888877655 48999999999999999999999999
Q ss_pred ccCCCCCCC
Q psy6490 231 KIDPKHATP 239 (398)
Q Consensus 231 ~l~v~~~~~ 239 (398)
.|.|+...+
T Consensus 98 ~l~i~LKtp 106 (146)
T PF08952_consen 98 TLKIRLKTP 106 (146)
T ss_dssp EEEEEE---
T ss_pred EEEEEeCCc
Confidence 988765543
No 183
>KOG2416|consensus
Probab=96.08 E-value=0.0081 Score=58.70 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=63.0
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCcee---CCEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQ-FGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMI---KNKK 319 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~-~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i---~g~~ 319 (398)
....++.|||.||-.-+|.-.|+.++.+ .|.|++.+ +|+. |..|||.|.+.+.| ...-.|||..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W--mDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW--MDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHH--HHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4456778999999999999999999995 66677663 3422 55899999996555 44557888875 6899
Q ss_pred EEEEecCchHHHh
Q psy6490 320 VECKKAQPKEAVQ 332 (398)
Q Consensus 320 i~v~~a~~k~~~~ 332 (398)
|.+.|....+..+
T Consensus 514 L~adf~~~deld~ 526 (718)
T KOG2416|consen 514 LIADFVRADELDK 526 (718)
T ss_pred eEeeecchhHHHH
Confidence 9999988766553
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.77 E-value=0.056 Score=37.08 Aligned_cols=54 Identities=17% Similarity=0.340 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC---CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMF---GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~---G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
....|+|+|+ .+++.++|+.+|..| .....|..+.|. .|-|.|.+.+.|.+||.
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 3468999999 468899999999999 134567777774 58999999999999986
No 185
>KOG2202|consensus
Probab=95.76 E-value=0.0038 Score=54.82 Aligned_cols=61 Identities=13% Similarity=0.259 Sum_probs=47.7
Q ss_pred HHHHHh-cCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCC
Q psy6490 178 LREYFG-MFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 178 L~~~f~-~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~ 239 (398)
|...|+ +||+|+++++..+. .-.-+|-+||.|..+|+|++|+. +|+..++|+.|.......
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 333334 99999998775543 33467889999999999999998 899999999987766543
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.69 E-value=0.064 Score=38.90 Aligned_cols=53 Identities=13% Similarity=0.307 Sum_probs=39.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
.....||+ .|.++...||.++|+.||.|. |..+.|. .|||...+.+.+..+++
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMN 60 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHH
Confidence 44566666 999999999999999999876 4445543 79999999999998876
No 187
>KOG2068|consensus
Probab=95.45 E-value=0.015 Score=53.25 Aligned_cols=110 Identities=22% Similarity=0.403 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCCHHHHH---HHHhcCCCEEEEEEeeCCC--CCC-cccEEEEEEcChHhHHHHHh-CCCcccCCccc
Q psy6490 160 TSAKLFVGGLSWQTSSEKLR---EYFGMFGAVTDVLIMKDPI--TQR-SRGFGFITFAEPETVEKVLK-VPIHTLDGKKI 232 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~---~~f~~~G~i~~~~~~~~~~--~~~-~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l 232 (398)
..+-+||-+|+..+.++++. +.|..||.|..|.+.++.. .+. .-.-+||.|...|+|.+||. .++..++|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 45778999999887666654 5788999999998888762 111 12238999999999999998 78888999987
Q ss_pred CCCCCCCCCC-----CccCccccceeecCCC---CCCCHHHHHHH
Q psy6490 233 DPKHATPKNR-----PKIGNRTKKIFVGGVS---QDTSAEEVKAY 269 (398)
Q Consensus 233 ~v~~~~~~~~-----~~~~~~~~~l~V~nLp---~~~tee~L~~~ 269 (398)
+......+.. ........++|+.-+. ..+|.+|++..
T Consensus 156 ka~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~~ 200 (327)
T KOG2068|consen 156 KASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKSA 200 (327)
T ss_pred HHhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHHH
Confidence 7666554322 1222233457766553 34666666543
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.43 E-value=0.09 Score=36.09 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=39.2
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhc---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQF---GKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~---G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
..+|+|+|+. +++-+||+.+|..| ....+|..+-|. -|-|.|.+.+.|.+++
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARAL 59 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHH
Confidence 4569999984 58889999999998 134457776663 5789999987776655
No 189
>KOG2416|consensus
Probab=95.22 E-value=0.011 Score=57.78 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=57.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCccc---CCcc
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFG-MFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTL---DGKK 231 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~-~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~---~g~~ 231 (398)
-...++.|||.||-.-+|.-.|++++. .+|.|++.+|-+ -|..|||.|.+.++|..... |++..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 455789999999999999999999998 677777775532 35679999999999988776 555553 5555
Q ss_pred cCCCCC
Q psy6490 232 IDPKHA 237 (398)
Q Consensus 232 l~v~~~ 237 (398)
|.+.+.
T Consensus 514 L~adf~ 519 (718)
T KOG2416|consen 514 LIADFV 519 (718)
T ss_pred eEeeec
Confidence 655443
No 190
>KOG4285|consensus
Probab=95.08 E-value=0.08 Score=47.71 Aligned_cols=80 Identities=20% Similarity=0.232 Sum_probs=58.6
Q ss_pred CCCCCCCC--CcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCc
Q psy6490 153 TPTGDDPT--SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGK 230 (398)
Q Consensus 153 ~~~~~~~~--~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~ 230 (398)
.+.+++.+ +.-|-|-+++..-.. .|..+|++||+|++..... .-.+-+|.|.+..+|.+||..++..|+|.
T Consensus 187 ~pte~~~d~~D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALskng~ii~g~ 259 (350)
T KOG4285|consen 187 QPTEEEADAADTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSKNGTIIDGD 259 (350)
T ss_pred cccccccccccceEEEeccCccchh-HHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhhcCeeeccc
Confidence 33444444 677778788876554 4677899999998776542 24589999999999999999999998886
Q ss_pred c-cCCCCCCC
Q psy6490 231 K-IDPKHATP 239 (398)
Q Consensus 231 ~-l~v~~~~~ 239 (398)
. |-|+.+.+
T Consensus 260 vmiGVkpCtD 269 (350)
T KOG4285|consen 260 VMIGVKPCTD 269 (350)
T ss_pred eEEeeeecCC
Confidence 4 34555443
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.03 E-value=0.27 Score=38.21 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=46.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCccc
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTL 227 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~ 227 (398)
.+..+.+...|..++.++|..+.+.+- .|..++|++|.. .++-.+++.|.+.++|+...+ .||+.+
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 445556666666677777877766664 677889988743 356679999999999999977 344443
No 192
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=94.97 E-value=0.076 Score=44.03 Aligned_cols=116 Identities=19% Similarity=0.113 Sum_probs=78.0
Q ss_pred cEEEEcCCC--CCCCHHHHHHHHhc-CCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCC
Q psy6490 162 AKLFVGGLS--WQTSSEKLREYFGM-FGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 162 ~~l~v~nLp--~~~t~~~L~~~f~~-~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~ 238 (398)
....|+.+- ...+-..|.+.+.+ .+....+.+..- ..++..+.|.+.+++.++++...-.++|..+.+....
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 344455552 23556666665543 222223333222 3568999999999999999977777888888888777
Q ss_pred CCCCCccC---ccccceeecCCCCC-CCHHHHHHHHhhcCCeeEEEEe
Q psy6490 239 PKNRPKIG---NRTKKIFVGGVSQD-TSAEEVKAYFSQFGKVEETVML 282 (398)
Q Consensus 239 ~~~~~~~~---~~~~~l~V~nLp~~-~tee~L~~~F~~~G~i~~v~i~ 282 (398)
+....... ...-.|.|.|||.. .+++-|+.+.+.+|.+.++...
T Consensus 91 ~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 91 PDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred ccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 54433222 23445888999987 6788889999999999987654
No 193
>KOG2068|consensus
Probab=94.96 E-value=0.011 Score=54.11 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=60.3
Q ss_pred cceeecCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCC--CCC-cceEEEEEeCCH-HHHHHHHHHCCceeCCEEEEE
Q psy6490 250 KKIFVGGVSQDTSAEEVK---AYFSQFGKVEETVMLMDQQ--TKR-HRGFGFVTFENE-EVVDHICEIHFHMIKNKKVEC 322 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~---~~F~~~G~i~~v~i~~~~~--~~~-~kg~afV~F~~~-eaa~a~~~l~~~~i~g~~i~v 322 (398)
.-+||-+|+..+.++++. +.|..||.|..|.+.++.. .+. ...-++|+|+.+ +++.++...+|..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888998877666654 4899999999999888752 111 111279999995 555666689999999999888
Q ss_pred EecCchHHH
Q psy6490 323 KKAQPKEAV 331 (398)
Q Consensus 323 ~~a~~k~~~ 331 (398)
.+...+-..
T Consensus 158 ~~gttkycs 166 (327)
T KOG2068|consen 158 SLGTTKYCS 166 (327)
T ss_pred hhCCCcchh
Confidence 887776544
No 194
>KOG4285|consensus
Probab=94.94 E-value=0.071 Score=48.03 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=61.3
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEE-EEEEecCc
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKK-VECKKAQP 327 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~-i~v~~a~~ 327 (398)
...|.|-+.+..-. .-|..+|++||.|.+...- ..-.|-+|+|.+.-.|++++..||+.|+|.. |-|+.|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 45677778876543 4577889999999976543 2245999999999999999999999998764 67888888
Q ss_pred hHHHhhh
Q psy6490 328 KEAVQAN 334 (398)
Q Consensus 328 k~~~~~~ 334 (398)
|......
T Consensus 270 ksvi~~s 276 (350)
T KOG4285|consen 270 KSVINGS 276 (350)
T ss_pred HHHhccc
Confidence 7766543
No 195
>KOG2135|consensus
Probab=94.86 E-value=0.017 Score=55.13 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=66.9
Q ss_pred CCCCCCcEEEEcCCCCCCC-HHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTS-SEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t-~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v 234 (398)
....+.+.|-+.-++..+. -++|...|.+||+|.+|.+-.. .-.|.|+|.+..+|-+|...++..|+++.|.+
T Consensus 367 ~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl 440 (526)
T KOG2135|consen 367 HAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKL 440 (526)
T ss_pred chhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEE
Confidence 3444677888888888864 4889999999999999988543 23699999999999999999999999999999
Q ss_pred CCCCCCC
Q psy6490 235 KHATPKN 241 (398)
Q Consensus 235 ~~~~~~~ 241 (398)
.|..+..
T Consensus 441 ~whnps~ 447 (526)
T KOG2135|consen 441 FWHNPSP 447 (526)
T ss_pred EEecCCc
Confidence 9988755
No 196
>KOG2193|consensus
Probab=94.74 E-value=0.045 Score=51.50 Aligned_cols=77 Identities=17% Similarity=0.384 Sum_probs=57.2
Q ss_pred cceeecCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHH-HHHHHCCc-eeCCEEEEEEec
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQF--GKVEETVMLMDQQTKRHRGFGFVTFENEEVVD-HICEIHFH-MIKNKKVECKKA 325 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~--G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~-a~~~l~~~-~i~g~~i~v~~a 325 (398)
.++|++||...++..||+.+|... +.-..+ +. ..||+||.+.+..-+. ++..++|+ .+.|+++.|...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f--l~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF--LV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce--ee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 468999999999999999999863 211111 11 1579999999977554 45557665 588999999999
Q ss_pred CchHHHhhh
Q psy6490 326 QPKEAVQAN 334 (398)
Q Consensus 326 ~~k~~~~~~ 334 (398)
.+|..+.+.
T Consensus 74 v~kkqrsrk 82 (584)
T KOG2193|consen 74 VPKKQRSRK 82 (584)
T ss_pred hhHHHHhhh
Confidence 888766543
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.46 E-value=0.036 Score=47.23 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=47.1
Q ss_pred cccceeecCCCCCCCHHHHHHHHhh-cCCe---eEEEEeecCCC-C-CcceEEEEEeCCHHHHHHHH-HHCCceeCC---
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQ-FGKV---EETVMLMDQQT-K-RHRGFGFVTFENEEVVDHIC-EIHFHMIKN--- 317 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~-~G~i---~~v~i~~~~~~-~-~~kg~afV~F~~~eaa~a~~-~l~~~~i~g--- 317 (398)
...+|.|++||..+||+++++.++. ++.- .++.-...... . ..-..|||.|.+.+++.... .++|+.+-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999997776 6665 33331122111 1 12346999999977766655 678876632
Q ss_pred --EEEEEEecCch
Q psy6490 318 --KKVECKKAQPK 328 (398)
Q Consensus 318 --~~i~v~~a~~k 328 (398)
....|++|--+
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 35667776543
No 198
>KOG2591|consensus
Probab=94.38 E-value=0.11 Score=50.72 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=57.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHh--cCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh---CCCcccCCc
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFG--MFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK---VPIHTLDGK 230 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~--~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~---~~~~~~~g~ 230 (398)
......+.|.++.||..+-+|+++.+|+ .|-++++|.+-.+. -=||+|++.+||..|.+ ...++|.|+
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 3445678889999999999999999996 57899999887653 36999999999999987 244568888
Q ss_pred ccC
Q psy6490 231 KID 233 (398)
Q Consensus 231 ~l~ 233 (398)
.|.
T Consensus 243 pIm 245 (684)
T KOG2591|consen 243 PIM 245 (684)
T ss_pred chh
Confidence 764
No 199
>KOG2591|consensus
Probab=94.36 E-value=0.1 Score=50.97 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=48.6
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhh--cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH---HCCceeCCEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQ--FGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE---IHFHMIKNKKVE 321 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~--~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~---l~~~~i~g~~i~ 321 (398)
.+.+.|.|+-|+..+-+|+|+.+|+. +-.+.+|.+..+ .+| ||+|+++.+|..+.+ -.-+.|-|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~nW-yITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------DNW-YITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------Cce-EEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34567899999999999999999985 778888887655 223 899999766644322 233445555544
Q ss_pred E
Q psy6490 322 C 322 (398)
Q Consensus 322 v 322 (398)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 3
No 200
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.30 E-value=0.2 Score=35.98 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHhhcCC-----eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 259 QDTSAEEVKAYFSQFGK-----VEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 259 ~~~tee~L~~~F~~~G~-----i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
..++..+|..++...+. |-+|.|..+ |+||+-....+.+.+..|++..++|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46788899998887654 556666433 899999888777778889999999999999875
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.05 E-value=0.14 Score=43.79 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=42.2
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHC--CceeCCEEEEEEecCch
Q psy6490 262 SAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIH--FHMIKNKKVECKKAQPK 328 (398)
Q Consensus 262 tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~--~~~i~g~~i~v~~a~~k 328 (398)
..+.|+++|..|+.+....+++. -+-..|.|.+.++|.+++ .++ +..+.|..++|-++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45889999999999988877655 236789999977776666 578 89999999999998543
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.90 E-value=0.58 Score=36.39 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=51.0
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCC---EEEEEE
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQF-GKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKN---KKVECK 323 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~-G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g---~~i~v~ 323 (398)
...+.+...|+.++-++|..+.+.+ ..|..++|++|.. .++-.++++|.+.++|+... +.||+.++. ..++|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvv 90 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVV 90 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEE
Confidence 3345555566667777777666654 4577888888843 34657899999988887755 789998753 345554
Q ss_pred ec
Q psy6490 324 KA 325 (398)
Q Consensus 324 ~a 325 (398)
|.
T Consensus 91 fV 92 (110)
T PF07576_consen 91 FV 92 (110)
T ss_pred EE
Confidence 43
No 203
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.41 E-value=0.28 Score=39.39 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=54.1
Q ss_pred CCCCCcEEEEcCCCCCCCH-HH---HHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCccc
Q psy6490 157 DDPTSAKLFVGGLSWQTSS-EK---LREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKI 232 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~-~~---L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l 232 (398)
.+.+-.+|.|+=|..++.. +| +...++.||+|.+|.+.- +-.|.|.|+|..+|-+|+.......-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 4557789999877766533 44 445568999999998753 447999999999999999854555566666
Q ss_pred CCCCC
Q psy6490 233 DPKHA 237 (398)
Q Consensus 233 ~v~~~ 237 (398)
.+.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 55553
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.28 E-value=0.03 Score=41.47 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=45.5
Q ss_pred EEEEEcChHhHHHHHhC--CCcccCCcccCCCCCCC--CCC----CccCccccceeecCCCCCCCHHHHHHHHh
Q psy6490 206 GFITFAEPETVEKVLKV--PIHTLDGKKIDPKHATP--KNR----PKIGNRTKKIFVGGVSQDTSAEEVKAYFS 271 (398)
Q Consensus 206 afV~f~~~e~a~~al~~--~~~~~~g~~l~v~~~~~--~~~----~~~~~~~~~l~V~nLp~~~tee~L~~~F~ 271 (398)
|+|+|.+.+-|++.+++ +...+++..+.|..... ... -...-..++|.|+|||..+++|+|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999984 33446666655443221 111 11233567899999999999999988543
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.27 E-value=0.098 Score=44.58 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhc-CCCEE---EEEEeeCCCC-C-CcccEEEEEEcChHhHHHHHh-CCCcccC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGM-FGAVT---DVLIMKDPIT-Q-RSRGFGFITFAEPETVEKVLK-VPIHTLD 228 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~-~G~i~---~~~~~~~~~~-~-~~~g~afV~f~~~e~a~~al~-~~~~~~~ 228 (398)
....|.|++||+++|++++.+.++. ++.-. .+.-...... . ..-.-|||.|.+.+++..... +++..|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 5579999999999999999987776 66552 2221122111 1 123359999999999888876 5665543
No 206
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.17 E-value=2.1 Score=38.84 Aligned_cols=168 Identities=9% Similarity=0.146 Sum_probs=100.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCC-------CCCcccEEEEEEcChHhHHHHHh-----C--
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPI-------TQRSRGFGFITFAEPETVEKVLK-----V-- 222 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~-------~~~~~g~afV~f~~~e~a~~al~-----~-- 222 (398)
+.-.+|.|.+.|+..+++--.+...|-+||.|++|.++.+.. ..+......+.|-+.+.+-.... +
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 344789999999999999999999999999999999998751 12334578899999888765542 1
Q ss_pred CCcccCCcccCCCCCCCCCCC-----------------------ccCccccceeecCCCCCCCHHHHH-H---HHhhcC-
Q psy6490 223 PIHTLDGKKIDPKHATPKNRP-----------------------KIGNRTKKIFVGGVSQDTSAEEVK-A---YFSQFG- 274 (398)
Q Consensus 223 ~~~~~~g~~l~v~~~~~~~~~-----------------------~~~~~~~~l~V~nLp~~~tee~L~-~---~F~~~G- 274 (398)
-...++...|.+....-+... .....++.|.|. +...++++++. + ++..-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCC
Confidence 223355555544332210000 011234455554 23444344332 2 222223
Q ss_pred ---CeeEEEEeecC--CCCCcceEEEEEeCCHHHHHHHHH---HCCceeC-CEEEEEEec
Q psy6490 275 ---KVEETVMLMDQ--QTKRHRGFGFVTFENEEVVDHICE---IHFHMIK-NKKVECKKA 325 (398)
Q Consensus 275 ---~i~~v~i~~~~--~~~~~kg~afV~F~~~eaa~a~~~---l~~~~i~-g~~i~v~~a 325 (398)
.|++|.|+.-. ....++.||.+.|-+...|-.+++ .++...+ .+..-|...
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~ 229 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQ 229 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEecc
Confidence 35666666432 234467899999999887766654 3444443 344444443
No 207
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.71 E-value=0.57 Score=37.67 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=49.5
Q ss_pred CccccceeecCCCCCCC-HHH---HHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHH-HHHHHHHHCCceeCCEEE
Q psy6490 246 GNRTKKIFVGGVSQDTS-AEE---VKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE-VVDHICEIHFHMIKNKKV 320 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~t-ee~---L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~e-aa~a~~~l~~~~i~g~~i 320 (398)
...-.+|.|+=|...+. .|| |...++.||.|.+|... | +--|.|.|+|.. +++|+...+. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 33456788876655542 234 44566779999998764 2 347999999954 5566666654 7778888
Q ss_pred EEEec
Q psy6490 321 ECKKA 325 (398)
Q Consensus 321 ~v~~a 325 (398)
.+.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 88885
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.61 E-value=0.59 Score=32.61 Aligned_cols=52 Identities=13% Similarity=0.228 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCccc
Q psy6490 172 QTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKI 232 (398)
Q Consensus 172 ~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l 232 (398)
.++-++++..+.+|+- . +|..|+ .| -||.|.+.++|++|.+ .++..+.+.+|
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 5788999999999963 2 334443 34 5899999999999998 45555555443
No 209
>KOG0804|consensus
Probab=90.13 E-value=1.1 Score=42.84 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=56.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDG 229 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g 229 (398)
.++.|+|-.+|..++-.||..|+..+- .|.++++++|... ++=..++.|.+.++|....+ +||..|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 389999999999999999999987664 7899999997432 34469999999999999987 66666654
No 210
>KOG3702|consensus
Probab=89.36 E-value=0.85 Score=45.81 Aligned_cols=72 Identities=8% Similarity=0.077 Sum_probs=60.6
Q ss_pred ceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEE
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVEC 322 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v 322 (398)
+||+.|--..-+..-+..++..++.+...+++.....+..-+-++++|....+++++..+.++.+..+.+++
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKSLPNKKFASKCLKS 584 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhccccccccccceec
Confidence 789988888888888999999999999999888877777666899999999998888887777777666555
No 211
>KOG2891|consensus
Probab=89.33 E-value=0.46 Score=42.40 Aligned_cols=38 Identities=21% Similarity=0.501 Sum_probs=30.3
Q ss_pred CccccceeecCCCCCC------------CHHHHHHHHhhcCCeeEEEEee
Q psy6490 246 GNRTKKIFVGGVSQDT------------SAEEVKAYFSQFGKVEETVMLM 283 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~------------tee~L~~~F~~~G~i~~v~i~~ 283 (398)
.+...+|++.+||-.| +++.|+..|+.||.|..|.|..
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3456789998888543 6788999999999999988753
No 212
>KOG0804|consensus
Probab=88.81 E-value=1.1 Score=43.04 Aligned_cols=67 Identities=10% Similarity=0.250 Sum_probs=54.6
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCC
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQF-GKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKN 317 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~-G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g 317 (398)
+..|+|-.+|-.+|-.||..|+..| -.|..++|++|... ++=..+|+|.+.++|.... ++||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999999875 46899999997432 2445899999987777755 799998764
No 213
>KOG2253|consensus
Probab=88.32 E-value=0.26 Score=49.27 Aligned_cols=72 Identities=21% Similarity=0.128 Sum_probs=59.5
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCH-HHHHHHHHHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENE-EVVDHICEIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~-eaa~a~~~l~~~~i~g~~i~v~ 323 (398)
......+|||+|+...+..+-++.+...+|.|.++..+. |+|..|... -++++++.++-..++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 344567899999999999999999999999998776532 899999995 5667777888888988888776
Q ss_pred ec
Q psy6490 324 KA 325 (398)
Q Consensus 324 ~a 325 (398)
.-
T Consensus 107 ~d 108 (668)
T KOG2253|consen 107 VD 108 (668)
T ss_pred ch
Confidence 53
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.15 E-value=0.79 Score=39.28 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=42.8
Q ss_pred CHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CC--CcccCCcccCCCCCC
Q psy6490 174 SSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VP--IHTLDGKKIDPKHAT 238 (398)
Q Consensus 174 t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~--~~~~~g~~l~v~~~~ 238 (398)
..+.|+++|..|+.+..+..++. -+-..|.|.+.++|.++.. ++ +..+.|..+++.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999988888765 3468999999999999987 56 677888888877663
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=84.11 E-value=5.6 Score=27.75 Aligned_cols=54 Identities=11% Similarity=0.266 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEE
Q psy6490 260 DTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVEC 322 (398)
Q Consensus 260 ~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v 322 (398)
.++-++++..+.+|+-.. |..| . .|| ||.|.+.+.|+++. ..++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d-~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDD-R----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEec-C----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999997543 3334 2 345 89999977887776 46888887777654
No 216
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=83.91 E-value=1.4 Score=34.72 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=28.2
Q ss_pred CCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHH
Q psy6490 261 TSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN-EEVVDHICEI 310 (398)
Q Consensus 261 ~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~-~eaa~a~~~l 310 (398)
.+.++|++.|+.|..++ ++.+.+.. ...|+++|+|.+ -.--+.|+.+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHH
Confidence 45689999999999876 66666643 468999999986 4444444443
No 217
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=83.69 E-value=2.2 Score=32.91 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHhh---cCCeeEEEEeecCCCCCcceEEEEEeCCH
Q psy6490 257 VSQDTSAEEVKAYFSQ---FGKVEETVMLMDQQTKRHRGFGFVTFENE 301 (398)
Q Consensus 257 Lp~~~tee~L~~~F~~---~G~i~~v~i~~~~~~~~~kg~afV~F~~~ 301 (398)
-|+.+|-.+|+++|++ |-.|.+-.+.+|---..+-..||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 4678999999999986 66666555555532223344788888753
No 218
>KOG4483|consensus
Probab=83.27 E-value=2.5 Score=39.94 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=47.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGA-VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~-i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~ 222 (398)
.+-...|-|.++|.....+||...|+.|+. --+|+++-|. .+|..|.+...|..||.+
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 335578999999999999999999999973 3455555553 799999999999999875
No 219
>KOG4410|consensus
Probab=83.16 E-value=3.8 Score=36.90 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChH
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPE 214 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e 214 (398)
..-...||++||+.++.-.||+..+.+.|-+ -..+... .+.|-||..|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 3355679999999999999999999887632 1222222 14678999998753
No 220
>KOG2318|consensus
Probab=82.86 E-value=5.9 Score=39.43 Aligned_cols=126 Identities=13% Similarity=0.211 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhcC----CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCccc
Q psy6490 158 DPTSAKLFVGGLSWQ-TSSEKLREYFGMF----GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKI 232 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~-~t~~~L~~~f~~~----G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l 232 (398)
...+++|-|=||.++ +.-.+|.-+|+.| |.|.+|.|.... |....-+ ...+.|-.+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------FGkeRM~-------eEeV~GP~~ 231 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------FGKERMK-------EEEVHGPPK 231 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------hhHHHhh-------hhcccCChh
Confidence 447899999999987 7889999998866 588888886542 2221111 123444433
Q ss_pred CCCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHC
Q psy6490 233 DPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIH 311 (398)
Q Consensus 233 ~v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~ 311 (398)
.+........... ...+..++-.+.-+..|+. .+.+. =||.|+|.+.+.|.++. +++
T Consensus 232 el~~~~e~~~~s~-----------sD~ee~~~~~~~kLR~Yq~-~rLkY----------YyAVvecDsi~tA~~vYe~CD 289 (650)
T KOG2318|consen 232 ELFKPVEEYKESE-----------SDDEEEEDVDREKLRQYQL-NRLKY----------YYAVVECDSIETAKAVYEECD 289 (650)
T ss_pred hhccccccCcccc-----------cchhhhhhHHHHHHHHHHh-hhhee----------EEEEEEecCchHHHHHHHhcC
Confidence 3322221111110 1111111222344444432 11111 18999999999999987 589
Q ss_pred CceeCCE--EEEEEe
Q psy6490 312 FHMIKNK--KVECKK 324 (398)
Q Consensus 312 ~~~i~g~--~i~v~~ 324 (398)
|..+... .|.++|
T Consensus 290 G~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 290 GIEFESSANKLDLRF 304 (650)
T ss_pred cceeccccceeeeee
Confidence 9988754 455554
No 221
>KOG4574|consensus
Probab=81.95 E-value=1 Score=46.54 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=60.4
Q ss_pred eeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH-HHHCCcee--CCEEEEEEecCch
Q psy6490 252 IFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHI-CEIHFHMI--KNKKVECKKAQPK 328 (398)
Q Consensus 252 l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~-~~l~~~~i--~g~~i~v~~a~~k 328 (398)
.++.|..-..+-..|..+|+.||.|.+.+.+++. ..|.|+|.+.+.|..+ ..++|+.+ -|-..+|.+++..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3455556677888999999999999999988883 3799999997766554 46888774 5778999999988
Q ss_pred HHHhhh
Q psy6490 329 EAVQAN 334 (398)
Q Consensus 329 ~~~~~~ 334 (398)
++....
T Consensus 375 ~~~ep~ 380 (1007)
T KOG4574|consen 375 PMYEPP 380 (1007)
T ss_pred ccccCC
Confidence 776553
No 222
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=80.57 E-value=2.4 Score=29.79 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=48.1
Q ss_pred HHHHHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCCCC
Q psy6490 176 EKLREYFGMFG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATPKN 241 (398)
Q Consensus 176 ~~L~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~~~ 241 (398)
++|++-|...| .|.++.-+..+.++......||++....+...+++ -..+.+..+.|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~--Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK--IKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee--hHhhCCeEEEEecCCCCC
Confidence 56788888888 78888888877677777789999988777555544 557888888887765443
No 223
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=79.25 E-value=2.8 Score=29.32 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=48.0
Q ss_pred HHHHHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCCCC
Q psy6490 176 EKLREYFGMFG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATPKN 241 (398)
Q Consensus 176 ~~L~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~~~ 241 (398)
++|++-|.++| .+..+.-+....++.....-||+.....+....+ +-..|+|+++.|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il--~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEIL--NIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceE--eehhhCCeeEEEecCcccC
Confidence 46788888899 8888888888777777778899888776555543 3567888888888765543
No 224
>KOG4574|consensus
Probab=77.90 E-value=1 Score=46.55 Aligned_cols=71 Identities=15% Similarity=0.226 Sum_probs=54.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcc--cCCcccCCCCC
Q psy6490 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHT--LDGKKIDPKHA 237 (398)
Q Consensus 161 ~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~--~~g~~l~v~~~ 237 (398)
..+.++-|.+-..+...|..+|++||.|.+.+..++ -..+.|+|.+.|+|..|++ +.++. ..|-+.+|..+
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 345667777778899999999999999999999887 3479999999999999987 44443 23444444433
No 225
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=76.97 E-value=4 Score=28.68 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=43.9
Q ss_pred HHHHHHHhhcC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCch
Q psy6490 264 EEVKAYFSQFG-KVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 264 e~L~~~F~~~G-~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~k 328 (398)
++|++.|...| .|..+.-++...++..-..-||+.+.....+.++ +=+.|++..|+|++...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecCCCC
Confidence 57888888888 5677776667656666778888888743333333 335678888999886644
No 226
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=76.92 E-value=4.9 Score=36.54 Aligned_cols=79 Identities=13% Similarity=0.267 Sum_probs=56.8
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecC-------CCCCcceEEEEEeCCHHHHHH----HH-HHC--Cc
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQ-------QTKRHRGFGFVTFENEEVVDH----IC-EIH--FH 313 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~-------~~~~~kg~afV~F~~~eaa~a----~~-~l~--~~ 313 (398)
.++.|.+.|+..+++-.++...|.+||.|++|.++.+. +..+......+.|-+.+.+-- ++ ++. .+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998774 112334577899988665432 22 232 24
Q ss_pred eeCCEEEEEEecC
Q psy6490 314 MIKNKKVECKKAQ 326 (398)
Q Consensus 314 ~i~g~~i~v~~a~ 326 (398)
.+....|+|.|..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 4666667776654
No 227
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.23 E-value=7.9 Score=27.59 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHhcCC-----CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 171 WQTSSEKLREYFGMFG-----AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 171 ~~~t~~~L~~~f~~~G-----~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
..++..+|..++...+ .|-+|++..+ |.||+-... .++.+++ +++..++|+++.++.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 4588889998887664 4667777544 899988664 5666666 778899999988764
No 228
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=73.96 E-value=1.6 Score=41.28 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=53.9
Q ss_pred CCCcEEEEcCCCCCCCHH--------HHHHHHhc--CCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 159 PTSAKLFVGGLSWQTSSE--------KLREYFGM--FGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~--------~L~~~f~~--~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
...+.+|+.+.....+.+ ++...|.. .+.+..++..++.....++|..|++|...+.+.+.+.
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 356789999998876666 89999998 6788889999888778899999999999999999864
No 229
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=71.78 E-value=9.4 Score=26.12 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=15.0
Q ss_pred HHHHHHHhhcCCeeEEEE
Q psy6490 264 EEVKAYFSQFGKVEETVM 281 (398)
Q Consensus 264 e~L~~~F~~~G~i~~v~i 281 (398)
.+||++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999985544
No 230
>KOG4365|consensus
Probab=71.10 E-value=0.99 Score=43.02 Aligned_cols=78 Identities=4% Similarity=-0.177 Sum_probs=62.4
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCc
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~ 327 (398)
.+.|+..|+-..+++++.-+|+.||.|.-+.+.+.-..+..+..+||.-.+.++-..+..+....+.|..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeeccCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456888999999999999999999999988877766677778889998887666666666666777777777776654
No 231
>KOG4410|consensus
Probab=67.30 E-value=6.8 Score=35.35 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=34.1
Q ss_pred ceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCH
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENE 301 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~ 301 (398)
.|+++||+.++.-.||+..+.+-|.+- ..|-. ....|-||+.|-+.
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCc
Confidence 499999999999999999999876543 22211 12367899999653
No 232
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=67.05 E-value=45 Score=24.01 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=42.2
Q ss_pred eeecCCCCCCCHHHHHHHHhh-------cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCcee
Q psy6490 252 IFVGGVSQDTSAEEVKAYFSQ-------FGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMI 315 (398)
Q Consensus 252 l~V~nLp~~~tee~L~~~F~~-------~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i 315 (398)
|..++||..+|.++|.+.-.+ +..|..++-..+.+.+ |-||+.+=.|+|+.+++.+..|...
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARRAGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHHcCCCc
Confidence 556789988999998876654 4455555554453333 5677777778999888777656543
No 233
>KOG4483|consensus
Probab=65.47 E-value=20 Score=34.15 Aligned_cols=63 Identities=8% Similarity=0.153 Sum_probs=45.9
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeC
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVE-ETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIK 316 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~-~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~ 316 (398)
+-...|-|.++|....-|||...|+.|+.-- +|.++-| -.||-.|.+...|..++.|...+++
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~kh~~lK 452 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTLKHDWLK 452 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhccCceEE
Confidence 3456788999999999999999999997532 2333333 2799999998877777776443333
No 234
>KOG3424|consensus
Probab=64.84 E-value=14 Score=28.80 Aligned_cols=48 Identities=13% Similarity=0.386 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHhh-cCCeeEEEEeec----CCCCCcceEEEEEeCCHHHHHHHH
Q psy6490 260 DTSAEEVKAYFSQ-FGKVEETVMLMD----QQTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 260 ~~tee~L~~~F~~-~G~i~~v~i~~~----~~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
.++.+||++-+.+ |-.-.++.++.+ -.+|++.|||.| |++.|.++...
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkfE 86 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKFE 86 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhcC
Confidence 5788888887776 554444444333 345778899987 56677766544
No 235
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=64.82 E-value=20 Score=27.27 Aligned_cols=48 Identities=17% Similarity=0.348 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHhh-cCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHH
Q psy6490 260 DTSAEEVKAYFSQ-FGKVEETVMLMDQQ----TKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 260 ~~tee~L~~~F~~-~G~i~~v~i~~~~~----~~~~kg~afV~F~~~eaa~a~~ 308 (398)
..+..+|++-+.. |+.=.+..++..-. .++++|||.| |+|.+.++.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~E 82 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKIE 82 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhhC
Confidence 6678888876664 77544444444322 2556677765 56677777654
No 236
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=63.65 E-value=10 Score=26.59 Aligned_cols=62 Identities=10% Similarity=0.163 Sum_probs=42.3
Q ss_pred HHHHHHHhhcC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCc
Q psy6490 264 EEVKAYFSQFG-KVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 264 e~L~~~F~~~G-~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~ 327 (398)
++|++.|.++| .+..+.-++...++..-..-||+.......+- -++=+.|+|++|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecCcc
Confidence 46888899988 57777777766666666777888876322222 2344678899999987543
No 237
>KOG4019|consensus
Probab=62.48 E-value=6.9 Score=33.00 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=45.4
Q ss_pred cceeecCCCCCCCH-----HHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHH-HHHHHHHHCCceeCCE-EEEE
Q psy6490 250 KKIFVGGVSQDTSA-----EEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE-VVDHICEIHFHMIKNK-KVEC 322 (398)
Q Consensus 250 ~~l~V~nLp~~~te-----e~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~e-aa~a~~~l~~~~i~g~-~i~v 322 (398)
.++.+.+++..+-. .....+|..|-+..-..+++. .++..|.|.+.+ ++.+.++++...|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 34666667654322 223344554444433333322 456678899955 5566778999999998 8888
Q ss_pred EecCchH
Q psy6490 323 KKAQPKE 329 (398)
Q Consensus 323 ~~a~~k~ 329 (398)
-++.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 8887643
No 238
>KOG4213|consensus
Probab=60.12 E-value=5.1 Score=33.62 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=47.0
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEe
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTK--RHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~--~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~ 324 (398)
..+++|.. +.+..-++|.++-+ |.+.++...+.. .+ ..+|-.||.|.+.+.+++..+-+.....-+.|...|
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELKRSG 183 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHHHHH
Confidence 34566666 33333344444444 677777654442 23 567899999999999999887776666666666555
No 239
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=57.48 E-value=16 Score=27.09 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=24.5
Q ss_pred EEEEeCCHHHHHHHHHHC--CceeCCEEEEEEec
Q psy6490 294 GFVTFENEEVVDHICEIH--FHMIKNKKVECKKA 325 (398)
Q Consensus 294 afV~F~~~eaa~a~~~l~--~~~i~g~~i~v~~a 325 (398)
|+|+|++++.|+.++.+. ...+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 689999999999998764 44567777766543
No 240
>KOG2854|consensus
Probab=55.54 E-value=20 Score=33.43 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
+..++|+|-+-.+---+.|++..+.-|--....+..|-.||. ++-+...+..+....+. .+.. .+.+..
T Consensus 80 p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGt---Cavli~~~nRSL~anLgAAn~f-------~~dhl~ 149 (343)
T KOG2854|consen 80 PGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGT---CAVLITGDNRSLCANLGAANCF-------KVDHLD 149 (343)
T ss_pred CCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCce---EEEEEeCCCcchhhccchhhcc-------CHHHhc
Confidence 448999998877776777777777777544444444443332 22222333222222111 1111 111111
Q ss_pred CCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEee----------cCCCCCcceEEEEEeCCHHHHHHHH
Q psy6490 239 PKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLM----------DQQTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 239 ~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~----------~~~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
..+.-...++.+.+||.++-..+..+.|+.+=+..-+..++.+.- +..-.+.-.|+.|.|.+++.|++..
T Consensus 150 ~~~~~~lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~ 229 (343)
T KOG2854|consen 150 KEENWALVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFA 229 (343)
T ss_pred chhhhhhhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHH
Confidence 111111223445567777666665555544333221111111100 0001122348999999998888877
Q ss_pred HHCC
Q psy6490 309 EIHF 312 (398)
Q Consensus 309 ~l~~ 312 (398)
+.++
T Consensus 230 ~~~~ 233 (343)
T KOG2854|consen 230 RAHG 233 (343)
T ss_pred HhhC
Confidence 7653
No 241
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.78 E-value=32 Score=23.60 Aligned_cols=20 Identities=15% Similarity=0.557 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCCEEEEEEee
Q psy6490 176 EKLREYFGMFGAVTDVLIMK 195 (398)
Q Consensus 176 ~~L~~~f~~~G~i~~~~~~~ 195 (398)
.+||++|+..|.|.-+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 67999999999988766643
No 242
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=54.75 E-value=69 Score=23.10 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=37.7
Q ss_pred eeecCCCCCCCHHHHHHHHhh-cC-CeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHH
Q psy6490 252 IFVGGVSQDTSAEEVKAYFSQ-FG-KVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICE 309 (398)
Q Consensus 252 l~V~nLp~~~tee~L~~~F~~-~G-~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~ 309 (398)
-|+-.++.+.+..+|++.++. || .|.+|+.+.-+. + .--|||++...+.| +.+.+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHh
Confidence 456667889999999999997 66 567777655531 2 23599999875444 44444
No 243
>KOG2891|consensus
Probab=54.42 E-value=12 Score=33.68 Aligned_cols=35 Identities=26% Similarity=0.535 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCCC------------CCHHHHHHHHhcCCCEEEEEEe
Q psy6490 160 TSAKLFVGGLSWQ------------TSSEKLREYFGMFGAVTDVLIM 194 (398)
Q Consensus 160 ~~~~l~v~nLp~~------------~t~~~L~~~f~~~G~i~~~~~~ 194 (398)
...|||+.+||-. -+++-|+..|+.||.|..|.|.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 4568899888853 3678899999999999988875
No 244
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=53.27 E-value=71 Score=23.47 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=36.6
Q ss_pred eeecCCCCCCCHHHHHHHHhh-cC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q psy6490 252 IFVGGVSQDTSAEEVKAYFSQ-FG-KVEETVMLMDQQTKRHRGFGFVTFENEEVVDH 306 (398)
Q Consensus 252 l~V~nLp~~~tee~L~~~F~~-~G-~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a 306 (398)
-|+-.++.+.+..+|++.++. || .|.+|+.+.-+. + .--|||++...+.|..
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~ 76 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEE 76 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHH
Confidence 455557789999999999998 66 577777665531 2 2359999988555543
No 245
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=52.02 E-value=37 Score=27.26 Aligned_cols=48 Identities=17% Similarity=0.418 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHhh-cC-CeeEEEEeec----CCCCCcceEEEEEeCCHHHHHHHH
Q psy6490 260 DTSAEEVKAYFSQ-FG-KVEETVMLMD----QQTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 260 ~~tee~L~~~F~~-~G-~i~~v~i~~~----~~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
..+.+||++-+.. |+ .=.+..++.. --.|.+.|||.| |+|.|+++.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~E 88 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKFE 88 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 6788899887775 76 3333333322 223567777766 56677776654
No 246
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=51.29 E-value=66 Score=21.48 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=39.7
Q ss_pred ceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC-H---HHHHHHHHHC
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN-E---EVVDHICEIH 311 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~-~---eaa~a~~~l~ 311 (398)
++.|.||.-.-....|++.+...-.|.++.+-.. .+.+-|.|+. . +....+++.-
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHh
Confidence 4677778777778899999999988988887544 4578899975 3 4444444433
No 247
>KOG2295|consensus
Probab=50.48 E-value=3.6 Score=40.60 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=51.6
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHCCceeCCEEE
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN-EEVVDHICEIHFHMIKNKKV 320 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~-~eaa~a~~~l~~~~i~g~~i 320 (398)
..++||++|++..++..+|..+|+.+-.+.++-+-.+........+.+|.|+. .+--.++-.||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 45689999999999999999999998777766554433333445578899986 34444455677766654443
No 248
>KOG4368|consensus
Probab=50.28 E-value=36 Score=34.16 Aligned_cols=12 Identities=17% Similarity=-0.033 Sum_probs=5.8
Q ss_pred ceEEEEEeCCHH
Q psy6490 291 RGFGFVTFENEE 302 (398)
Q Consensus 291 kg~afV~F~~~e 302 (398)
.+-.|+..++.+
T Consensus 679 ~~s~~lse~NKG 690 (757)
T KOG4368|consen 679 SNSAPLGEENKG 690 (757)
T ss_pred cCCCccccccch
Confidence 344555555543
No 249
>KOG4213|consensus
Probab=50.24 E-value=18 Score=30.54 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEeeCCCCC--CcccEEEEEEcChHhHHHHHhCCCcccC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMF-GAVTDVLIMKDPITQ--RSRGFGFITFAEPETVEKVLKVPIHTLD 228 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~-G~i~~~~~~~~~~~~--~~~g~afV~f~~~e~a~~al~~~~~~~~ 228 (398)
..+++|.. .|++.|.++..-- |.+..+.+.+.. .+ ..+|..||.|.+.+.+..+++-......
T Consensus 110 ~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~ 175 (205)
T KOG4213|consen 110 KERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEEKGA 175 (205)
T ss_pred HHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhhhcc
Confidence 45677776 5555555543311 688888775533 33 5788999999999999998774433333
No 250
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=49.86 E-value=9 Score=36.42 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=51.2
Q ss_pred cccceeecCCCCCCCHH--------HHHHHHhh--cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q psy6490 248 RTKKIFVGGVSQDTSAE--------EVKAYFSQ--FGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee--------~L~~~F~~--~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
..+.+|+.+.+...+.+ ++...|.. ++.+..++..+|..+..++|..|++|...+.+.+.+
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 45678999988876665 99999999 788888998888777888999999999988777766
No 251
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.40 E-value=17 Score=28.54 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=26.7
Q ss_pred CCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHh-HHHHHh
Q psy6490 173 TSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPET-VEKVLK 221 (398)
Q Consensus 173 ~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~-a~~al~ 221 (398)
++.++|++.|+.|..++ ++...++. .+.|++.|+|.+.-+ -..|++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 35588999999998764 55555542 468899999987643 344443
No 252
>KOG2295|consensus
Probab=44.08 E-value=5.1 Score=39.58 Aligned_cols=69 Identities=9% Similarity=0.017 Sum_probs=50.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCccc
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTL 227 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~ 227 (398)
...++||++|+..+++-.+|..+++.+--+..+.+..+........+++|.|+..-....|+. +++..+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 356889999999999999999999998777766665444334456678999987766666654 444443
No 253
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.43 E-value=1.5e+02 Score=24.34 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC---CCEEEEEEeeCCCC---------CCccc-EEEEEEcChHhHH
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMF---GAVTDVLIMKDPIT---------QRSRG-FGFITFAEPETVE 217 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~---G~i~~~~~~~~~~~---------~~~~g-~afV~f~~~e~a~ 217 (398)
+...||+..++..+++++.++..++- +++.+|.+-+.+.. ...+. |-+|.|++-....
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk 156 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELK 156 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhh
Confidence 34799999999999999999988765 46677766554321 22344 8899998866543
No 254
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.37 E-value=1e+02 Score=25.16 Aligned_cols=53 Identities=26% Similarity=0.373 Sum_probs=38.9
Q ss_pred cceeecCCCCCCCHHHHHHHHhhc---CCeeEEEEeecCCC---------CCcce-EEEEEeCCHH
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQF---GKVEETVMLMDQQT---------KRHRG-FGFVTFENEE 302 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~---G~i~~v~i~~~~~~---------~~~kg-~afV~F~~~e 302 (398)
.+|++.-+...+++++.++..++- ++++.|.+-+.++. ...++ |-+|.|++-.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~ 153 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGK 153 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccch
Confidence 579999999999999999999874 56777766554322 12234 8889998843
No 255
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=41.16 E-value=1.3e+02 Score=28.33 Aligned_cols=118 Identities=13% Similarity=0.270 Sum_probs=63.1
Q ss_pred cEEEEc---CCCCCCCHHHHHHH----HhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCC
Q psy6490 162 AKLFVG---GLSWQTSSEKLREY----FGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDP 234 (398)
Q Consensus 162 ~~l~v~---nLp~~~t~~~L~~~----f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v 234 (398)
.+|-++ |.+++-+-|.++.. +++||--.++++.+.-. ..+|-|-|.|.-.-. + .++ .+.+
T Consensus 110 ~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GgGeV~~~v~p~-~-~l~---------~i~l 176 (326)
T cd00874 110 STVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGF--YPRGGGEVVLTVEPS-K-LLP---------PLLL 176 (326)
T ss_pred EEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEecc-c-CCC---------ccee
Confidence 445554 34555566666654 47899767777776532 245556666643321 0 011 1110
Q ss_pred CCCCCCCCCccCccccceeecCCCCCCCHHHHH---HHHhh-cCCeeEEEEeecCCCCCcceEEEEEeC
Q psy6490 235 KHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVK---AYFSQ-FGKVEETVMLMDQQTKRHRGFGFVTFE 299 (398)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~---~~F~~-~G~i~~v~i~~~~~~~~~kg~afV~F~ 299 (398)
. . .. +...-.-..++.+||.++.+..+. +.+.+ ++ .++.+..|...+.+.|++.+-+.
T Consensus 177 ~--~-~g--~i~~irg~~~~~~l~~~va~r~~~~a~~~L~~~~~--~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 177 E--E-RG--EIEKIRGISHAANLPPHVAERQAEAAAALLRKALG--LQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred e--c-CC--CeEEEEEEEEEccCCHHHHHHHHHHHHHHHhhccC--CCeEEEEEecCCCCCCEEEEEEE
Confidence 0 0 00 011122356888999988776554 45555 43 34455555445788888876554
No 256
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=40.93 E-value=87 Score=28.67 Aligned_cols=10 Identities=20% Similarity=0.883 Sum_probs=5.8
Q ss_pred cccEEEEEEc
Q psy6490 202 SRGFGFITFA 211 (398)
Q Consensus 202 ~~g~afV~f~ 211 (398)
.+||-+|.|.
T Consensus 324 akgydliayh 333 (422)
T PF13388_consen 324 AKGYDLIAYH 333 (422)
T ss_pred ccccceeeeC
Confidence 3566666654
No 257
>KOG3424|consensus
Probab=40.06 E-value=88 Score=24.46 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHhc-CC----CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHH
Q psy6490 172 QTSSEKLREYFGM-FG----AVTDVLIMKDPITQRSRGFGFITFAEPETVEKV 219 (398)
Q Consensus 172 ~~t~~~L~~~f~~-~G----~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~a 219 (398)
.++.+||++-+.+ |- .|.-..+...-..|++.|||.| |.+.|.+.+.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 5788888877653 22 2333334444456788999987 7777777654
No 258
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.84 E-value=1.4e+02 Score=21.55 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=39.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-CC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHH
Q psy6490 163 KLFVGGLSWQTSSEKLREYFGM-FG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKV 219 (398)
Q Consensus 163 ~l~v~nLp~~~t~~~L~~~f~~-~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~a 219 (398)
.-|+-.++.+.+..+|++.++. || .|.+|+...-+. ..--|||.+...++|...
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEI 70 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHH
Confidence 3555567889999999999986 56 677777766541 223599999888877665
No 259
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.23 E-value=1.4e+02 Score=22.01 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=40.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-CC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHH
Q psy6490 163 KLFVGGLSWQTSSEKLREYFGM-FG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVL 220 (398)
Q Consensus 163 ~l~v~nLp~~~t~~~L~~~f~~-~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al 220 (398)
.-|+-.++.+.+..+|++.++. || .|.+|+...-+. ..--|||.+...++|....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHH
Confidence 3444457789999999999986 56 678887776541 2235999999988887764
No 260
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=35.90 E-value=1.7e+02 Score=21.42 Aligned_cols=48 Identities=10% Similarity=0.306 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEE----EeecCCCCCcceEEEEEeCCHHHHHHH
Q psy6490 259 QDTSAEEVKAYFSQ-FGKVEETV----MLMDQQTKRHRGFGFVTFENEEVVDHI 307 (398)
Q Consensus 259 ~~~tee~L~~~F~~-~G~i~~v~----i~~~~~~~~~kg~afV~F~~~eaa~a~ 307 (398)
...+.+||++.+.. |+.=.+.. +...-..+.+.|||.| |+|.+.++.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 45678888887765 65422222 2223233556677765 5667777664
No 261
>PF14893 PNMA: PNMA
Probab=35.46 E-value=29 Score=32.78 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=33.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHh----cCCCEEEEEEeeCCCCCCcccEEEEEEcChHh
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFG----MFGAVTDVLIMKDPITQRSRGFGFITFAEPET 215 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~----~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~ 215 (398)
..+.|.|.+||.++++++|.+.+. ..|...-+.-+..+..+ ..-++|+|...-+
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~~n 74 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAEDVN 74 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccccc
Confidence 568999999999999999988774 44533222111112121 2368888875433
No 262
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=35.45 E-value=1.2e+02 Score=23.48 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEeecCCC----CCcceEEEEEeCCHHHHHHHH
Q psy6490 259 QDTSAEEVKAYFSQ-FGKVEETVMLMDQQT----KRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 259 ~~~tee~L~~~F~~-~G~i~~v~i~~~~~~----~~~kg~afV~F~~~eaa~a~~ 308 (398)
..-+.+||++.+.. +|.=.++.++..-.| ++++|||-| |+|.+.++.+.
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~iE 83 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKKIE 83 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHhcC
Confidence 45678888887765 776555555544333 456676665 45566665543
No 263
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.45 E-value=54 Score=30.71 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=34.2
Q ss_pred EEEEEcChHhHHHHHhCCCcccCCcccCCCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhh
Q psy6490 206 GFITFAEPETVEKVLKVPIHTLDGKKIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQ 272 (398)
Q Consensus 206 afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~ 272 (398)
|||.|++..+|..+++... ..+++.+.++.+...+ .|+=.||..+..+..+|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~-~~~~~~~~v~~APeP~---------DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL-SKRPNSWRVSPAPEPD---------DIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHh-cCCCCCceEeeCCCcc---------cccccccCCChHHHHHHHHHHH
Confidence 7999999999999988211 1222334444443222 2555677666666666655443
No 264
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=34.04 E-value=33 Score=20.67 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHhcCCC
Q psy6490 171 WQTSSEKLREYFGMFGA 187 (398)
Q Consensus 171 ~~~t~~~L~~~f~~~G~ 187 (398)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999987653
No 265
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=33.13 E-value=3.5e+02 Score=25.57 Aligned_cols=119 Identities=14% Similarity=0.252 Sum_probs=62.7
Q ss_pred cEEEEcC---CCCCCCHHHHHH----HHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCC
Q psy6490 162 AKLFVGG---LSWQTSSEKLRE----YFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDP 234 (398)
Q Consensus 162 ~~l~v~n---Lp~~~t~~~L~~----~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v 234 (398)
.+|-+++ .+++-+-|.++. ++++||--.++++.+.-. ..+|-|-|.|.-.-.. .++ .+.+
T Consensus 112 ~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GGGeV~~~i~p~~--~l~---------~i~l 178 (326)
T TIGR03399 112 SRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGF--YPRGGGEVRLRVEPVK--KLK---------PLEL 178 (326)
T ss_pred eEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEcccc--CCC---------ceee
Confidence 4555543 355556666665 457899877888876532 2455566666433210 011 1111
Q ss_pred CCCCCCCCCccCccccceeecCCCCCCCHHHH---HHHHhhcCCeeEEEEeecCCCCCcceEEEEEeC
Q psy6490 235 KHATPKNRPKIGNRTKKIFVGGVSQDTSAEEV---KAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFE 299 (398)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L---~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~ 299 (398)
. . +.....-....++.+||.++-+..+ ++.+.+++...++.+... ..+.+.|++++-+.
T Consensus 179 ~--~---~G~i~~i~g~~~~~~l~~~va~r~~~~a~~~L~~~~~~~~i~~~~~-~~~~s~G~~i~L~a 240 (326)
T TIGR03399 179 E--E---RGELLRVSGIAHAANLPAHVAERMAKAAREELRKLGLDPEIEIEVL-DKGLGPGSGIVLWA 240 (326)
T ss_pred e--c---CCceEEEEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEec-cCCCCCcEEEEEEE
Confidence 0 0 0011112235788899988876544 455666665334443332 45677888776554
No 266
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=32.51 E-value=1.6e+02 Score=19.91 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCcee
Q psy6490 263 AEEVKAYFSQFG-KVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMI 315 (398)
Q Consensus 263 ee~L~~~F~~~G-~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i 315 (398)
-.+|.++|.+.| .|.++.+.... . +++-.+.+++.+.+..+++-+|..+
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCCCEE
Confidence 357778888766 57777654431 1 4566666767767777776666543
No 267
>KOG4008|consensus
Probab=32.34 E-value=37 Score=29.99 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=29.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEE
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDV 191 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~ 191 (398)
......+||+-|+|..+|++.|.++.+.+|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34478999999999999999999999999855443
No 268
>KOG2671|consensus
Probab=32.09 E-value=1.1e+02 Score=29.17 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 172 QTSSEKLREYFGMFG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 172 ~~t~~~L~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
+....+|+.+.+-|| .|.. ..+. ++ ..-|-+|+|++.+.|.+.++
T Consensus 13 ~Fr~pE~eala~lF~~~i~~---sq~~-~t-~~PF~iv~~~s~~~Ar~~~k 58 (421)
T KOG2671|consen 13 DFRLPELEALASLFGLQIDE---SQKL-HT-TSPFFIVEFESEEIARNLIK 58 (421)
T ss_pred ccchHHHHHHHHHHhhhhhh---hhhh-cC-CCceEEEEeCchHHHHHHHH
Confidence 344455666666665 2222 1111 11 24599999999999999876
No 269
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=31.30 E-value=1.9e+02 Score=26.58 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=6.1
Q ss_pred HHHHHHHhcCCC
Q psy6490 176 EKLREYFGMFGA 187 (398)
Q Consensus 176 ~~L~~~f~~~G~ 187 (398)
+.|+-+-+.||-
T Consensus 266 eflkmLke~~g~ 277 (422)
T PF13388_consen 266 EFLKMLKENYGY 277 (422)
T ss_pred HHHHHHHhccCC
Confidence 444444456653
No 270
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=30.20 E-value=1.1e+02 Score=22.63 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=33.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAE 212 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~ 212 (398)
...-||||+++..+.|.-...+.+..+.=.-+.+-.+. + ..||.|-.+.+
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n--eqG~~~~t~G~ 73 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N--EQGFDFRTLGD 73 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C--CCCEEEEEeCC
Confidence 45679999999999988777777655443333333332 2 57898887743
No 271
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=29.92 E-value=3.9e+02 Score=25.85 Aligned_cols=39 Identities=23% Similarity=0.482 Sum_probs=29.5
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhcC----CCEEEEEEeeC
Q psy6490 158 DPTSAKLFVGGLSWQ-TSSEKLREYFGMF----GAVTDVLIMKD 196 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~-~t~~~L~~~f~~~----G~i~~~~~~~~ 196 (398)
...+.+|-|-||.++ +...+|...|+.| |.+..|.|...
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 446788999999886 7778898888865 46777777543
No 272
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=29.91 E-value=1.5e+02 Score=24.75 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=26.1
Q ss_pred ceeecCCCCCCCHHHHHHHHhh-cC-CeeEEEEeec
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFSQ-FG-KVEETVMLMD 284 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~~-~G-~i~~v~i~~~ 284 (398)
..|+-.++.+.+..+|++.|+. || .|..|..+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 3577778899999999999997 66 4666666543
No 273
>CHL00030 rpl23 ribosomal protein L23
Probab=29.55 E-value=1.6e+02 Score=22.16 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=24.7
Q ss_pred eeecCCCCCCCHHHHHHHHhh-cC-CeeEEEEeec
Q psy6490 252 IFVGGVSQDTSAEEVKAYFSQ-FG-KVEETVMLMD 284 (398)
Q Consensus 252 l~V~nLp~~~tee~L~~~F~~-~G-~i~~v~i~~~ 284 (398)
-|+--++.+.+..+|++.++. || .|..|..+.-
T Consensus 21 ~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 21 QYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 555567889999999999998 66 4666665544
No 274
>PF14893 PNMA: PNMA
Probab=29.49 E-value=48 Score=31.29 Aligned_cols=52 Identities=13% Similarity=0.296 Sum_probs=32.8
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhh-cCCeeEEEEee---cCCCCCcceEEEEEeCC
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQ-FGKVEETVMLM---DQQTKRHRGFGFVTFEN 300 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~-~G~i~~v~i~~---~~~~~~~kg~afV~F~~ 300 (398)
+..+.|.|.+||.++++++|.+.+.. +-.+-..+|.. .++.+ .--|+|+|..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e 71 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAE 71 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeeccc
Confidence 34567999999999999999988764 22222222221 11122 2368899876
No 275
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=29.32 E-value=5.1e+02 Score=24.70 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=61.7
Q ss_pred cEEEEcC---CCCCCCHHHHHHH----HhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCC
Q psy6490 162 AKLFVGG---LSWQTSSEKLREY----FGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDP 234 (398)
Q Consensus 162 ~~l~v~n---Lp~~~t~~~L~~~----f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v 234 (398)
.+|-+++ .+++-+-|.++.. +++||--.++++.+.-. ..+|-|-|.|.-.-. .++ ...+..+
T Consensus 114 ~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~i~rRG~--yP~GGGeV~~~i~p~---~l~--pi~l~e~---- 182 (343)
T PRK04204 114 SRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEIELLRRGF--YPAGGGEVALEVEPS---KLR--PLELLER---- 182 (343)
T ss_pred eEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEEeCCc--cCCCCeEEEEEEccC---Ccc--ceeeccC----
Confidence 4555553 4555566666654 57899767788776522 245557777754321 111 1111100
Q ss_pred CCCCCCCCCccCccccceeecCCCCCCCHHHHHHH-----HhhcCCeeEEEEeecCCCCCcceEEEEEe
Q psy6490 235 KHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAY-----FSQFGKVEETVMLMDQQTKRHRGFGFVTF 298 (398)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~-----F~~~G~i~~v~i~~~~~~~~~kg~afV~F 298 (398)
.+...-....++.+||.++.+..+... +..+....++.+.. ...+.+.||+.+-+
T Consensus 183 --------G~i~~irg~~~~~~l~~~ia~R~~~~a~~~~~l~~~~~~~~i~~~~-~~~~~s~G~gi~L~ 242 (343)
T PRK04204 183 --------GELLRIRGISHVANLPEHVAERQAKAAAELLALSLGLIEIEINVEE-LSRGLGPGSGIVLW 242 (343)
T ss_pred --------CCcEEEEEEEEecCCCHHHHHHHHHHHhhhhhhhccCCCceeEEee-ccCCCCCceEEEEE
Confidence 011112235788899998887776653 33443333444332 34567778876544
No 276
>KOG4008|consensus
Probab=28.98 E-value=49 Score=29.26 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=28.8
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEET 279 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v 279 (398)
....++||+-|+|..+|++.|.++.+..|.+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3456789999999999999999999998866543
No 277
>PRK10263 DNA translocase FtsK; Provisional
Probab=28.77 E-value=1.5e+02 Score=33.54 Aligned_cols=6 Identities=17% Similarity=0.152 Sum_probs=2.5
Q ss_pred EEEEEe
Q psy6490 319 KVECKK 324 (398)
Q Consensus 319 ~i~v~~ 324 (398)
.++|.-
T Consensus 1240 p~Rvqg 1245 (1355)
T PRK10263 1240 PVRVHG 1245 (1355)
T ss_pred eeEEEe
Confidence 344443
No 278
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=28.72 E-value=1.5e+02 Score=20.70 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=36.1
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN 300 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~ 300 (398)
.+++|.++.=.--...+++..+....|.++.+-.+ +|-++|.|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcC
Confidence 45777777777778889999999888888888666 4568999987
No 279
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=28.64 E-value=58 Score=19.68 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHhhcCCee
Q psy6490 260 DTSAEEVKAYFSQFGKVE 277 (398)
Q Consensus 260 ~~tee~L~~~F~~~G~i~ 277 (398)
.+++++|++.+..+|.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 678999999999998655
No 280
>KOG0862|consensus
Probab=28.34 E-value=80 Score=27.63 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=21.4
Q ss_pred HHHHHHHhh-cCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHH
Q psy6490 264 EEVKAYFSQ-FGKVEETVMLMDQQTKRHRGFGFVTFEN-EEVVDH 306 (398)
Q Consensus 264 e~L~~~F~~-~G~i~~v~i~~~~~~~~~kg~afV~F~~-~eaa~a 306 (398)
|||.+.|.+ ||.-. .+..+|-|+||+|++ ..-++.
T Consensus 89 edL~~EF~~~~~~~~--------~~~~~RPY~FieFD~~IQk~Kk 125 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNI--------IQPASRPYAFIEFDTFIQKTKK 125 (216)
T ss_pred HHHHHHHHHhccccc--------CCccCCCeeEEehhHHHHHHHH
Confidence 556666654 66432 233457799999987 444443
No 281
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.16 E-value=99 Score=22.57 Aligned_cols=30 Identities=7% Similarity=0.328 Sum_probs=21.8
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 187 AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 187 ~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
.|.++....+ .+||-|||=.+..++..|++
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~ 62 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIR 62 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHT
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHh
Confidence 4555554333 69999999999999999987
No 282
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=27.86 E-value=2.4e+02 Score=20.55 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=34.3
Q ss_pred eecCCCCCCCHHHHHHHH-------hhcCCeeEEEEeecCCCCC-cceE--E-EEEeCCHHHHHHHH
Q psy6490 253 FVGGVSQDTSAEEVKAYF-------SQFGKVEETVMLMDQQTKR-HRGF--G-FVTFENEEVVDHIC 308 (398)
Q Consensus 253 ~V~nLp~~~tee~L~~~F-------~~~G~i~~v~i~~~~~~~~-~kg~--a-fV~F~~~eaa~a~~ 308 (398)
.+-.|..+++++++.+++ .....|+++.+-++..... .+|| + +++|+|.++.++..
T Consensus 5 vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 5 VLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 334467788887775544 3356688888776643332 2444 3 46899988877644
No 283
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=27.69 E-value=23 Score=28.88 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHhh----cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCchH
Q psy6490 260 DTSAEEVKAYFSQ----FGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 260 ~~tee~L~~~F~~----~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~k~ 329 (398)
..+-..|.+.+.+ .|.+.-..+ ..++..++|.+++++..+++.....++|..+.+....+..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l--------~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~ 93 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL--------GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDF 93 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe--------CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccc
Confidence 3455555555554 444442222 1468999999999999999988888999988888776543
No 284
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=27.35 E-value=1e+02 Score=23.40 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=32.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcCh
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEP 213 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~ 213 (398)
-..-||||+++..+.|.--..+-+.++. -++.++... +. ..||.|-.+.+.
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~-~~-eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWAT-NT-ESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcC-CC-CCCcEEEecCCC
Confidence 4567999999998888766666665543 222232221 22 348998887764
No 285
>PRK11901 hypothetical protein; Reviewed
Probab=27.10 E-value=1.3e+02 Score=28.21 Aligned_cols=46 Identities=7% Similarity=0.181 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEE--EeCCHHHHHHHHH
Q psy6490 262 SAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFV--TFENEEVVDHICE 309 (398)
Q Consensus 262 tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV--~F~~~eaa~a~~~ 309 (398)
+++.|..|..+++ +..+++.....+|+.. |..| .|.+.++|+++++
T Consensus 255 ~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~ 302 (327)
T PRK11901 255 RSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIA 302 (327)
T ss_pred CHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHH
No 286
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=26.85 E-value=1.2e+02 Score=22.34 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=21.4
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEEcC
Q psy6490 187 AVTDVLIMKDPITQRSRGFGFITFAE 212 (398)
Q Consensus 187 ~i~~~~~~~~~~~~~~~g~afV~f~~ 212 (398)
+|.++++..-...++-++||-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888777678999999999987
No 287
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=26.75 E-value=70 Score=29.23 Aligned_cols=33 Identities=6% Similarity=0.108 Sum_probs=15.4
Q ss_pred EEEEEeCCHHHHHHHHHH--CCceeCCEEEEEEec
Q psy6490 293 FGFVTFENEEVVDHICEI--HFHMIKNKKVECKKA 325 (398)
Q Consensus 293 ~afV~F~~~eaa~a~~~l--~~~~i~g~~i~v~~a 325 (398)
|....|.-.+...+++.+ .+-.+++-.+.|..+
T Consensus 215 fqvaSisypde~Q~lin~r~s~~M~gD~~rf~Q~s 249 (345)
T COG4260 215 FQVASISYPDESQALINMRNSGAMLGDPQRFVQGS 249 (345)
T ss_pred EEEEEecCcHHHHHHHHhhcccccccCchhhhhhh
Confidence 333444444555555543 344555555544443
No 288
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=26.13 E-value=1.3e+02 Score=22.06 Aligned_cols=58 Identities=21% Similarity=0.433 Sum_probs=33.3
Q ss_pred cccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCCCCCCccCccccceeecCC-------------CCCCCHHHHHH
Q psy6490 202 SRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATPKNRPKIGNRTKKIFVGGV-------------SQDTSAEEVKA 268 (398)
Q Consensus 202 ~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~V~nL-------------p~~~tee~L~~ 268 (398)
|-.||.|+|.-.++. .++. .+|..|.-+. ..+.|||.+. -.+-|.|+|.+
T Consensus 7 Sd~y~VV~~~~~~~~-~~l~-----~gGyEIVDK~-----------~~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDd 69 (85)
T PF12091_consen 7 SDNYCVVEFPPDAGH-PALA-----RGGYEIVDKN-----------ARREIFIDGSWAEMFREDVQALIASEPTQEEVDD 69 (85)
T ss_pred CCceEEEEecCCCCc-cchh-----cCCcEEeecC-----------CCceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 466999999543333 3333 3444442222 2345777663 34567888888
Q ss_pred HHhhcCCe
Q psy6490 269 YFSQFGKV 276 (398)
Q Consensus 269 ~F~~~G~i 276 (398)
++..|..+
T Consensus 70 fL~~y~~l 77 (85)
T PF12091_consen 70 FLGGYDAL 77 (85)
T ss_pred HHHHHHHH
Confidence 88887543
No 289
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=25.18 E-value=1.3e+02 Score=22.09 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=20.6
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCC
Q psy6490 275 KVEETVMLMDQQTKRHRGFGFVTFEN 300 (398)
Q Consensus 275 ~i~~v~i~~~~~~~~~kg~afV~F~~ 300 (398)
.|.+|+|..-...++-+|||=|.|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36778877766668899999999987
No 290
>KOG0156|consensus
Probab=24.63 E-value=1.4e+02 Score=30.02 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=45.1
Q ss_pred cceeecCCCCCCCH---HHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEE
Q psy6490 250 KKIFVGGVSQDTSA---EEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKV 320 (398)
Q Consensus 250 ~~l~V~nLp~~~te---e~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i 320 (398)
.-=+||||+.-... ..+.++=++||.|-.+++-.. =.|.-.+.+.|+.++..++..+.+|..
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 33467887654433 455666668999998776322 267778899999999989999988875
No 291
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=24.49 E-value=93 Score=23.17 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=32.0
Q ss_pred eeecCCCCCCCHHHHHHHHhh-cCC-eeEEEEeecCC----CCCcc------eEEEEEeCCH
Q psy6490 252 IFVGGVSQDTSAEEVKAYFSQ-FGK-VEETVMLMDQQ----TKRHR------GFGFVTFENE 301 (398)
Q Consensus 252 l~V~nLp~~~tee~L~~~F~~-~G~-i~~v~i~~~~~----~~~~k------g~afV~F~~~ 301 (398)
.|.-.++.++|..||++.++. ||. |.+|+.+.-.. .|... --|+|++...
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~ 83 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEG 83 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTT
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCC
Confidence 455557889999999999997 773 66666544320 12111 2478888764
No 292
>KOG0156|consensus
Probab=23.85 E-value=1.4e+02 Score=30.06 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=46.6
Q ss_pred cEEEEcCCCCCCC---HHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCccc
Q psy6490 162 AKLFVGGLSWQTS---SEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKI 232 (398)
Q Consensus 162 ~~l~v~nLp~~~t---~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l 232 (398)
.-=+||||..-.. -..+.++-++||.|..+++-. .-.|...+.+.|+.++..++..+.+|..
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 3346777765433 355666677999999887733 2477888999999999988999999886
No 293
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.68 E-value=1.4e+02 Score=22.52 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=20.5
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCC
Q psy6490 275 KVEETVMLMDQQTKRHRGFGFVTFEN 300 (398)
Q Consensus 275 ~i~~v~i~~~~~~~~~kg~afV~F~~ 300 (398)
.|.+|+|..-...|+-|+||=|.|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46777776665568889999999987
No 294
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=23.30 E-value=63 Score=35.51 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=9.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCC
Q psy6490 163 KLFVGGLSWQTSSEKLREYFGMFG 186 (398)
Q Consensus 163 ~l~v~nLp~~~t~~~L~~~f~~~G 186 (398)
+++|--+-..+-.+.|+.+.+.|+
T Consensus 74 ~~~v~t~ka~~PpeHLrki~~~~s 97 (2365)
T COG5178 74 TLHVLTLKAPIPPEHLRKIQSPCS 97 (2365)
T ss_pred heeeeccCCCCCHHHHHhhhCccc
Confidence 334433444444444444444333
No 295
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.15 E-value=1.4e+02 Score=22.55 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=21.3
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEEcC
Q psy6490 187 AVTDVLIMKDPITQRSRGFGFITFAE 212 (398)
Q Consensus 187 ~i~~~~~~~~~~~~~~~g~afV~f~~ 212 (398)
+|.+|++..-...|+-|+||-|.|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788887766678899999999987
No 296
>KOG1295|consensus
Probab=21.62 E-value=1.1e+02 Score=29.34 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=43.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEeeCCCC--CCcccEEEEEEcChHhHHHHHh-CCCcc
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGA-VTDVLIMKDPIT--QRSRGFGFITFAEPETVEKVLK-VPIHT 226 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~-i~~~~~~~~~~~--~~~~g~afV~f~~~e~a~~al~-~~~~~ 226 (398)
....|.|.+||...++.+|.+-...+-. +....+...... ..-.+.+||.|...++.....+ +++..
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 4467899999999999999888877642 222223211111 1125679999999999777655 34443
No 297
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.44 E-value=1.8e+02 Score=23.55 Aligned_cols=42 Identities=31% Similarity=0.463 Sum_probs=25.0
Q ss_pred CCCCCCHHHHHHHHhhcC------CeeEEEEeecCCCCCcceEEEEEeC
Q psy6490 257 VSQDTSAEEVKAYFSQFG------KVEETVMLMDQQTKRHRGFGFVTFE 299 (398)
Q Consensus 257 Lp~~~tee~L~~~F~~~G------~i~~v~i~~~~~~~~~kg~afV~F~ 299 (398)
|..+.+.++|+++...|. .|+.|.|......|+.-|-| |.|.
T Consensus 37 l~~~~~~~~vr~Fq~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga-~~FK 84 (138)
T PF11215_consen 37 LSDDNSTEEVRKFQFTFAKLMEDYKVDKVVIKERATKGKFAGGA-VGFK 84 (138)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCccCCc-hhHH
Confidence 555666677766544432 57778877776666655433 4444
No 298
>PF11179 DUF2967: Protein of unknown function (DUF2967); InterPro: IPR021349 This family of proteins with unknown function appears to be restricted to Drosophila.
Probab=21.30 E-value=19 Score=30.44 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=13.0
Q ss_pred CCCCCCCCcEEEEcCCCCCC
Q psy6490 154 PTGDDPTSAKLFVGGLSWQT 173 (398)
Q Consensus 154 ~~~~~~~~~~l~v~nLp~~~ 173 (398)
.+.++.+++.||-+.|..++
T Consensus 237 sdsde~encsvyerk~~adi 256 (258)
T PF11179_consen 237 SDSDEAENCSVYERKLSADI 256 (258)
T ss_pred Cccccccchhhhhhhccccc
Confidence 34555677888887776543
No 299
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.78 E-value=1.9e+02 Score=32.80 Aligned_cols=8 Identities=13% Similarity=0.173 Sum_probs=3.4
Q ss_pred HHHHhcCC
Q psy6490 179 REYFGMFG 186 (398)
Q Consensus 179 ~~~f~~~G 186 (398)
++.|..||
T Consensus 895 ~~~L~~F~ 902 (1355)
T PRK10263 895 EARLADFR 902 (1355)
T ss_pred HHHHHHCC
Confidence 33444444
No 300
>KOG1151|consensus
Probab=20.63 E-value=1.5e+02 Score=29.32 Aligned_cols=13 Identities=8% Similarity=0.169 Sum_probs=6.5
Q ss_pred eeecCCCCCCCHH
Q psy6490 252 IFVGGVSQDTSAE 264 (398)
Q Consensus 252 l~V~nLp~~~tee 264 (398)
+.|..|..+|.+|
T Consensus 493 vKIHqlNK~WrdE 505 (775)
T KOG1151|consen 493 VKIHQLNKNWRDE 505 (775)
T ss_pred EeeehhccchhhH
Confidence 3444555555444
No 301
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=20.57 E-value=2.6e+02 Score=21.05 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCeeEEE---EeecCCCCCcceEEEEEeCCHHHHHHHH
Q psy6490 264 EEVKAYFSQFGKVEETV---MLMDQQTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 264 e~L~~~F~~~G~i~~v~---i~~~~~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
+.+...|++||.--=++ +..-...........|+|.|.+.++.+-
T Consensus 23 ~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 23 SKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred HHhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHh
Confidence 34566788887521110 0000011233457899999999887654
No 302
>KOG1177|consensus
Probab=20.53 E-value=6.2e+02 Score=25.53 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCc-ccEEEEEEcChHh-------HHHHHhCCCcccCCcccCCCCCCCCCC
Q psy6490 171 WQTSSEKLREYFGMFGAVTDVLIMKDPITQRS-RGFGFITFAEPET-------VEKVLKVPIHTLDGKKIDPKHATPKNR 242 (398)
Q Consensus 171 ~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~-~g~afV~f~~~e~-------a~~al~~~~~~~~g~~l~v~~~~~~~~ 242 (398)
.++-..+|+++|.+.-.|.++.++--.++... .-+|+|.....++ .+...+ ..+-..+
T Consensus 492 ENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck---~klaHFK----------- 557 (596)
T KOG1177|consen 492 ENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCK---GKLAHFK----------- 557 (596)
T ss_pred cccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHh---ccccccc-----------
Confidence 56888999999999999999988765433211 1256666554333 222221 1122211
Q ss_pred CccCccccceeecCCCCCCC----HHHHHHHHhh
Q psy6490 243 PKIGNRTKKIFVGGVSQDTS----AEEVKAYFSQ 272 (398)
Q Consensus 243 ~~~~~~~~~l~V~nLp~~~t----ee~L~~~F~~ 272 (398)
-+...||+.+.|..+| +.+|++.++.
T Consensus 558 ----iPky~vf~~~FPlT~tGKIqKFeir~~~k~ 587 (596)
T KOG1177|consen 558 ----IPKYFVFVDEFPLTTTGKIQKFEIREMSKG 587 (596)
T ss_pred ----CCcEEEEeccCcccccccchhHHHHHHHHh
Confidence 1345688888887665 6788888874
No 303
>KOG4365|consensus
Probab=20.16 E-value=29 Score=33.54 Aligned_cols=75 Identities=4% Similarity=-0.233 Sum_probs=52.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
...|+..++...+++++.-+|..||-|..+.+.+....+..+-.+||.-.. .++..|+. +....+.|..+++..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 456788899999999999999999999888887766666677778887654 34455553 3333455555544433
No 304
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=20.07 E-value=5.1e+02 Score=24.68 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=59.2
Q ss_pred CCCCCCCHHHHHHH----HhcCCCE---EEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCCC
Q psy6490 168 GLSWQTSSEKLREY----FGMFGAV---TDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATPK 240 (398)
Q Consensus 168 nLp~~~t~~~L~~~----f~~~G~i---~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~~ 240 (398)
|.+++-+-|.++.. +++||-. .++++.+. .-..+|-|-|.|...- .+ -++ ...+.. .
T Consensus 119 ~~~~spsvD~~~~v~lP~l~~fG~~~~~~~l~v~rr--G~yP~GgG~V~~~~~~-~~-~l~--~i~l~~----------~ 182 (341)
T cd00875 119 NSTGDPSVDSIRTATLPLLKKFGIPDEELELKILKR--GVAPGGGGEVGFRCPV-RK-PLT--PHLNDS----------P 182 (341)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccceEEEEEec--cCCCCCCEEEEEEecC-cc-ccc--ceeecc----------C
Confidence 45666677777665 5789863 56666654 2235666777776321 11 111 111110 0
Q ss_pred CCCccCccccceeecCCCCCCCHHHHH---HHHhhcCCeeEEEEeec--CCCCCcceEEEEEeC
Q psy6490 241 NRPKIGNRTKKIFVGGVSQDTSAEEVK---AYFSQFGKVEETVMLMD--QQTKRHRGFGFVTFE 299 (398)
Q Consensus 241 ~~~~~~~~~~~l~V~nLp~~~tee~L~---~~F~~~G~i~~v~i~~~--~~~~~~kg~afV~F~ 299 (398)
. ....-.-..|+.+|+.++.+..+. +.+.+++.-.++.+... .+.+.+.|++.+-+.
T Consensus 183 G--~i~~irG~~~~~~l~~~va~r~~~~a~~~L~~~~~dv~i~~~~~~~~~~~~~~G~gi~L~a 244 (341)
T cd00875 183 G--RIKRIRGVAYSTRVSPSIANRMIDAARGVLNPFIPDVYIYTDVRKGDNSGKSPGFGISLVA 244 (341)
T ss_pred C--ceEEEEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEecccccCCCCCCeEEEEEE
Confidence 0 011122367888999988776554 45556554223333222 234567777765543
No 305
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.05 E-value=2.9e+02 Score=18.66 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=27.6
Q ss_pred CHHHHHHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEc--ChHhHHHHHhCCC
Q psy6490 174 SSEKLREYFGMFG-AVTDVLIMKDPITQRSRGFGFITFA--EPETVEKVLKVPI 224 (398)
Q Consensus 174 t~~~L~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~--~~e~a~~al~~~~ 224 (398)
.-..|.++|.++| .|.++...... +...+..++.+. +.+++.++|+..+
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~--~~~~~~v~i~v~~~~~~~~~~~L~~~G 65 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSK--EEDNKILVFRVQTMNPRPIIEDLRRAG 65 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccC--CCCeEEEEEEEecCCHHHHHHHHHHCC
Confidence 3456788898887 67767654432 222334455554 4455666665433
Done!