Query psy6490
Match_columns 398
No_of_seqs 470 out of 3044
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 19:26:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 1.4E-37 4.9E-42 271.5 19.4 177 157-333 9-188 (196)
2 4f02_A Polyadenylate-binding p 100.0 2.3E-37 7.8E-42 273.9 18.4 174 159-335 13-188 (213)
3 2cjk_A Nuclear polyadenylated 100.0 4.4E-37 1.5E-41 261.4 12.2 165 160-328 2-166 (167)
4 3md3_A Nuclear and cytoplasmic 100.0 2.8E-35 9.5E-40 249.8 18.7 163 162-326 1-165 (166)
5 2qfj_A FBP-interacting repress 100.0 2.2E-35 7.7E-40 261.6 17.4 170 160-329 27-206 (216)
6 1b7f_A Protein (SXL-lethal pro 100.0 3.8E-35 1.3E-39 249.6 17.3 163 160-325 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 6.2E-35 2.1E-39 247.8 18.4 162 161-325 2-167 (167)
8 3smz_A Protein raver-1, ribonu 100.0 2.4E-34 8.1E-39 266.0 17.0 211 108-333 56-269 (284)
9 3nmr_A Cugbp ELAV-like family 100.0 2.5E-33 8.7E-38 239.8 17.8 164 160-326 2-175 (175)
10 2g4b_A Splicing factor U2AF 65 100.0 4.6E-33 1.6E-37 237.7 18.3 158 160-326 3-172 (172)
11 1fje_B Nucleolin RBD12, protei 100.0 1E-33 3.5E-38 242.6 11.1 165 157-328 9-174 (175)
12 2yh0_A Splicing factor U2AF 65 100.0 2.2E-32 7.7E-37 238.9 19.0 164 160-329 3-195 (198)
13 2ghp_A U4/U6 snRNA-associated 100.0 3.2E-33 1.1E-37 259.4 14.5 204 108-328 80-291 (292)
14 3tyt_A Heterogeneous nuclear r 100.0 4.8E-32 1.7E-36 237.5 15.7 159 160-325 3-204 (205)
15 3pgw_A U1-A; protein-RNA compl 100.0 1.6E-31 5.3E-36 246.8 19.1 161 158-326 6-281 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 2.7E-31 9.3E-36 237.5 17.7 161 158-328 31-228 (229)
17 3smz_A Protein raver-1, ribonu 100.0 8.2E-31 2.8E-35 242.2 18.7 173 160-349 21-195 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 7.5E-31 2.6E-35 243.4 16.6 179 156-347 36-219 (292)
19 1qm9_A Polypyrimidine tract-bi 100.0 4.5E-31 1.5E-35 230.8 13.5 159 160-328 2-197 (198)
20 3sde_A Paraspeckle component 1 100.0 2.6E-30 8.8E-35 235.8 16.9 156 158-329 19-180 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 4.8E-24 1.7E-28 179.2 11.9 138 190-329 2-151 (158)
22 2i2y_A Fusion protein consists 99.9 2.4E-22 8.3E-27 167.2 10.2 123 200-328 10-148 (150)
23 4f25_A Polyadenylate-binding p 99.9 2.4E-22 8.2E-27 159.3 7.8 104 160-265 4-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 2.1E-21 7.3E-26 149.2 11.3 80 248-327 18-98 (99)
25 3s8s_A Histone-lysine N-methyl 99.8 1.1E-20 3.9E-25 148.0 12.2 87 248-334 5-92 (110)
26 2lxi_A RNA-binding protein 10; 99.8 5.7E-21 1.9E-25 144.6 6.8 82 249-330 1-85 (91)
27 4fxv_A ELAV-like protein 1; RN 99.8 2.4E-20 8.3E-25 143.3 8.4 80 160-239 18-98 (99)
28 2dgs_A DAZ-associated protein 99.8 3.3E-20 1.1E-24 142.9 8.7 86 246-331 7-92 (99)
29 2lkz_A RNA-binding protein 5; 99.8 2.6E-20 8.7E-25 141.6 8.0 81 247-327 7-94 (95)
30 3md1_A Nuclear and cytoplasmic 99.8 1.1E-19 3.7E-24 135.1 10.9 80 250-329 2-82 (83)
31 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-19 4E-24 136.2 11.1 82 247-328 4-86 (87)
32 3s7r_A Heterogeneous nuclear r 99.8 1.2E-19 4.2E-24 136.1 11.1 80 246-325 8-87 (87)
33 2cpz_A CUG triplet repeat RNA- 99.8 1.3E-19 4.4E-24 143.6 11.3 87 245-331 21-108 (115)
34 4f25_A Polyadenylate-binding p 99.8 8E-20 2.7E-24 144.7 10.1 83 249-333 5-88 (115)
35 1u6f_A Tcubp1, RNA-binding pro 99.8 2.9E-19 9.9E-24 146.5 13.6 84 160-243 41-125 (139)
36 2lea_A Serine/arginine-rich sp 99.8 2.7E-20 9.3E-25 151.6 7.1 121 205-329 6-128 (135)
37 2cqc_A Arginine/serine-rich sp 99.8 3.9E-19 1.3E-23 135.7 12.7 84 244-327 10-94 (95)
38 2dng_A Eukaryotic translation 99.8 1.5E-19 5.3E-24 140.1 10.1 85 245-330 11-95 (103)
39 2dgo_A Cytotoxic granule-assoc 99.8 3.4E-19 1.2E-23 141.1 12.2 90 243-332 9-99 (115)
40 2hgl_A HNRPF protein, heteroge 99.8 1E-19 3.5E-24 147.6 9.1 86 246-332 41-129 (136)
41 1whw_A Hypothetical protein ri 99.8 1.8E-19 6E-24 138.8 10.0 86 246-331 5-91 (99)
42 2jwn_A Embryonic polyadenylate 99.8 6E-20 2E-24 147.6 7.7 82 247-328 34-115 (124)
43 2cq4_A RNA binding motif prote 99.8 1.2E-19 4.1E-24 143.5 9.3 86 247-332 23-108 (114)
44 2cq0_A Eukaryotic translation 99.8 1.5E-19 5.2E-24 140.2 9.7 86 245-330 11-97 (103)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.5E-19 8.4E-24 133.8 10.3 80 247-326 5-85 (85)
46 1s79_A Lupus LA protein; RRM, 99.8 1E-19 3.5E-24 140.7 8.3 85 247-332 9-93 (103)
47 2x1f_A MRNA 3'-END-processing 99.8 3.1E-19 1.1E-23 136.5 10.9 85 249-333 2-87 (96)
48 2rs2_A Musashi-1, RNA-binding 99.8 1.4E-19 4.8E-24 141.8 9.1 86 245-330 21-106 (109)
49 1p27_B RNA-binding protein 8A; 99.8 1.8E-19 6E-24 140.6 9.6 85 245-329 19-104 (106)
50 3ucg_A Polyadenylate-binding p 99.8 2.5E-19 8.4E-24 135.1 10.0 81 248-328 5-85 (89)
51 2dnz_A Probable RNA-binding pr 99.8 2.3E-19 7.7E-24 137.0 9.9 84 247-330 3-87 (95)
52 1x5t_A Splicing factor 3B subu 99.8 1E-19 3.6E-24 139.2 7.9 85 247-331 3-89 (96)
53 2do4_A Squamous cell carcinoma 99.8 4.3E-19 1.5E-23 136.8 11.4 84 245-329 13-97 (100)
54 2dh8_A DAZ-associated protein 99.8 1.9E-19 6.5E-24 140.1 9.3 87 245-331 12-98 (105)
55 2cqg_A TDP-43, TAR DNA-binding 99.8 4.8E-19 1.7E-23 137.3 11.6 87 244-331 10-96 (103)
56 2mss_A Protein (musashi1); RNA 99.8 7.1E-20 2.4E-24 133.4 6.4 75 251-325 1-75 (75)
57 2jrs_A RNA-binding protein 39; 99.8 3E-19 1E-23 139.6 10.3 87 243-329 20-107 (108)
58 3p5t_L Cleavage and polyadenyl 99.8 6.6E-20 2.2E-24 138.5 6.3 82 250-331 2-86 (90)
59 2cpy_A RNA-binding protein 12; 99.8 3.4E-19 1.2E-23 140.8 10.5 88 246-334 12-100 (114)
60 1wi8_A EIF-4B, eukaryotic tran 99.8 2.1E-19 7.2E-24 139.6 9.0 86 245-331 11-97 (104)
61 1x4h_A RNA-binding protein 28; 99.8 3.4E-19 1.2E-23 140.2 10.2 88 244-331 10-104 (111)
62 3ns6_A Eukaryotic translation 99.8 1E-19 3.5E-24 140.3 6.9 85 248-332 5-97 (100)
63 2khc_A Testis-specific RNP-typ 99.8 5.1E-19 1.7E-23 140.8 11.2 83 244-326 35-118 (118)
64 2lxi_A RNA-binding protein 10; 99.8 4.4E-20 1.5E-24 139.6 4.7 83 161-243 1-86 (91)
65 1x4b_A Heterogeneous nuclear r 99.8 2.1E-19 7.2E-24 142.6 8.8 87 245-331 23-109 (116)
66 1oo0_B CG8781-PA, drosophila Y 99.8 3.5E-19 1.2E-23 139.9 10.0 85 245-329 22-107 (110)
67 2e5h_A Zinc finger CCHC-type a 99.8 7.7E-19 2.6E-23 133.8 11.6 81 246-326 13-94 (94)
68 1x5u_A Splicing factor 3B subu 99.8 2.3E-19 7.8E-24 139.7 8.8 86 245-330 11-97 (105)
69 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.3E-19 7.9E-24 138.9 8.8 86 246-331 9-95 (102)
70 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.1E-19 1.4E-23 150.0 10.9 88 246-333 69-157 (165)
71 3s8s_A Histone-lysine N-methyl 99.8 2.8E-19 9.4E-24 140.1 9.0 82 159-240 4-86 (110)
72 2cpf_A RNA binding motif prote 99.8 2.3E-19 7.7E-24 137.9 8.4 84 247-330 3-90 (98)
73 2dnm_A SRP46 splicing factor; 99.8 1.8E-19 6.2E-24 139.7 7.8 85 245-329 9-94 (103)
74 2dgs_A DAZ-associated protein 99.8 8.2E-19 2.8E-23 135.0 11.4 86 158-243 7-92 (99)
75 1p1t_A Cleavage stimulation fa 99.8 2.5E-19 8.5E-24 139.2 8.5 88 247-334 6-94 (104)
76 2d9p_A Polyadenylate-binding p 99.8 3.4E-19 1.2E-23 138.2 9.0 87 244-332 10-97 (103)
77 2db1_A Heterogeneous nuclear r 99.8 4.9E-19 1.7E-23 140.7 10.0 87 246-333 14-103 (118)
78 1x5s_A Cold-inducible RNA-bind 99.8 2.3E-19 7.8E-24 138.9 7.9 85 246-330 9-94 (102)
79 2cqd_A RNA-binding region cont 99.8 1.5E-18 5E-23 137.7 12.5 92 155-247 11-103 (116)
80 2kxn_B Transformer-2 protein h 99.8 4.7E-19 1.6E-23 143.0 9.7 85 245-329 42-127 (129)
81 2la6_A RNA-binding protein FUS 99.8 8.6E-19 3E-23 134.8 10.7 82 245-326 9-99 (99)
82 1u6f_A Tcubp1, RNA-binding pro 99.8 6.5E-19 2.2E-23 144.4 10.6 87 245-331 38-125 (139)
83 3n9u_C Cleavage and polyadenyl 99.8 1E-18 3.5E-23 145.6 11.8 86 248-333 54-142 (156)
84 2ywk_A Putative RNA-binding pr 99.8 1.1E-18 3.7E-23 133.2 11.1 82 245-327 12-94 (95)
85 2dnh_A Bruno-like 5, RNA bindi 99.8 6.1E-19 2.1E-23 137.3 9.8 86 245-331 11-100 (105)
86 2cph_A RNA binding motif prote 99.8 5.8E-19 2E-23 137.9 9.5 88 244-331 10-100 (107)
87 1x5u_A Splicing factor 3B subu 99.8 1.4E-18 4.8E-23 135.2 11.6 87 156-242 10-97 (105)
88 3s7r_A Heterogeneous nuclear r 99.8 5.5E-19 1.9E-23 132.5 8.9 81 157-237 7-87 (87)
89 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.5E-18 5.1E-23 134.5 11.6 85 245-331 11-96 (103)
90 2m2b_A RNA-binding protein 10; 99.8 3.1E-19 1.1E-23 144.7 7.7 86 244-329 18-109 (131)
91 2dgo_A Cytotoxic granule-assoc 99.8 1.6E-18 5.3E-23 137.3 11.5 88 156-243 10-98 (115)
92 2dnn_A RNA-binding protein 12; 99.8 1.1E-18 3.7E-23 136.1 10.4 84 247-332 14-97 (109)
93 2cq0_A Eukaryotic translation 99.8 9.4E-19 3.2E-23 135.7 10.1 89 155-243 9-98 (103)
94 2cpe_A RNA-binding protein EWS 99.8 8.1E-19 2.8E-23 138.5 9.5 87 245-331 11-106 (113)
95 2hgn_A Heterogeneous nuclear r 99.8 6.7E-20 2.3E-24 149.1 3.3 125 204-331 2-126 (139)
96 2div_A TRNA selenocysteine ass 99.8 1E-18 3.6E-23 134.4 9.9 83 246-328 6-94 (99)
97 2dh8_A DAZ-associated protein 99.8 1.7E-18 5.8E-23 134.7 11.1 88 156-243 11-98 (105)
98 1sjq_A Polypyrimidine tract-bi 99.8 6E-19 2.1E-23 135.4 8.4 80 246-331 13-95 (105)
99 4a8x_A RNA-binding protein wit 99.8 6E-19 2E-23 132.6 8.2 81 248-328 3-85 (88)
100 2dgp_A Bruno-like 4, RNA bindi 99.8 5.6E-19 1.9E-23 137.7 8.3 86 245-330 9-98 (106)
101 2fy1_A RNA-binding motif prote 99.8 9.1E-19 3.1E-23 138.7 9.4 84 247-331 5-89 (116)
102 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.7E-19 5.8E-24 139.1 5.0 83 246-329 16-99 (100)
103 3lqv_A PRE-mRNA branch site pr 99.8 2.9E-19 9.9E-24 141.5 6.5 102 160-275 7-109 (115)
104 2dng_A Eukaryotic translation 99.8 2.2E-18 7.4E-23 133.6 11.3 87 156-243 10-96 (103)
105 2cqd_A RNA-binding region cont 99.8 2E-18 6.7E-23 136.9 11.3 86 244-330 12-98 (116)
106 2dgw_A Probable RNA-binding pr 99.8 2.2E-18 7.5E-23 130.4 11.1 82 246-329 7-88 (91)
107 2cpz_A CUG triplet repeat RNA- 99.8 1.5E-18 5E-23 137.4 10.3 88 156-243 20-108 (115)
108 3ulh_A THO complex subunit 4; 99.8 2.5E-18 8.6E-23 134.2 11.4 81 245-326 25-106 (107)
109 2cq3_A RNA-binding protein 9; 99.8 2.5E-18 8.6E-23 133.3 11.3 86 244-331 10-96 (103)
110 2cqc_A Arginine/serine-rich sp 99.8 1.4E-18 4.6E-23 132.7 9.6 84 156-239 10-94 (95)
111 1x4h_A RNA-binding protein 28; 99.8 2.4E-18 8.3E-23 135.2 11.2 88 156-243 10-104 (111)
112 1iqt_A AUF1, heterogeneous nuc 99.8 3E-19 1E-23 130.0 5.5 75 251-325 1-75 (75)
113 2dnm_A SRP46 splicing factor; 99.8 1.7E-18 5.8E-23 134.2 10.1 87 156-242 8-95 (103)
114 2kt5_A RNA and export factor-b 99.8 5E-18 1.7E-22 136.2 13.2 84 245-329 31-115 (124)
115 1whw_A Hypothetical protein ri 99.8 1.8E-18 6.3E-23 133.0 10.2 85 159-243 6-91 (99)
116 2cph_A RNA binding motif prote 99.8 2.4E-18 8.4E-23 134.3 11.0 89 155-243 9-100 (107)
117 1wez_A HnRNP H', FTP-3, hetero 99.8 3.5E-19 1.2E-23 137.6 6.1 82 246-329 12-93 (102)
118 1wel_A RNA-binding protein 12; 99.8 2.7E-19 9.3E-24 143.6 5.5 88 246-333 22-109 (124)
119 2dhg_A TRNA selenocysteine ass 99.8 6.3E-19 2.2E-23 136.9 7.4 85 246-331 6-93 (104)
120 3pgw_S U1-70K; protein-RNA com 99.8 4.6E-19 1.6E-23 171.9 8.0 85 246-330 99-184 (437)
121 2cqp_A RNA-binding protein 12; 99.8 1.3E-18 4.5E-23 133.6 8.9 83 246-328 12-95 (98)
122 2kxn_B Transformer-2 protein h 99.8 1.9E-18 6.6E-23 139.3 10.3 86 156-241 41-127 (129)
123 2do4_A Squamous cell carcinoma 99.8 2.6E-18 8.8E-23 132.4 10.6 85 157-242 13-98 (100)
124 1wi8_A EIF-4B, eukaryotic tran 99.8 2.2E-18 7.6E-23 133.8 10.2 86 157-243 11-97 (104)
125 1wg5_A Heterogeneous nuclear r 99.8 1.2E-18 4.2E-23 135.2 8.6 84 246-330 12-96 (104)
126 2do0_A HnRNP M, heterogeneous 99.8 4.2E-18 1.4E-22 134.6 11.8 83 246-329 12-95 (114)
127 2dha_A FLJ20171 protein; RRM d 99.8 7.3E-19 2.5E-23 140.0 7.3 85 248-333 22-110 (123)
128 3r27_A HnRNP L, heterogeneous 99.8 2E-18 6.9E-23 131.2 9.3 79 245-329 17-98 (100)
129 2ek1_A RNA-binding protein 12; 99.8 9.9E-19 3.4E-23 133.4 7.7 80 248-327 14-94 (95)
130 2lkz_A RNA-binding protein 5; 99.8 2.7E-19 9.3E-24 135.9 4.4 81 159-239 7-94 (95)
131 2khc_A Testis-specific RNP-typ 99.8 2.1E-18 7.3E-23 137.1 9.8 82 156-237 35-117 (118)
132 2dgx_A KIAA0430 protein; RRM d 99.8 4.2E-18 1.4E-22 130.2 11.0 80 247-329 7-91 (96)
133 2cqg_A TDP-43, TAR DNA-binding 99.8 4.6E-18 1.6E-22 131.8 11.4 87 156-243 10-96 (103)
134 3md1_A Nuclear and cytoplasmic 99.8 1.9E-18 6.6E-23 128.3 8.9 81 161-241 1-82 (83)
135 2lmi_A GRSF-1, G-rich sequence 99.8 5.3E-19 1.8E-23 138.0 6.1 87 246-333 8-97 (107)
136 2wbr_A GW182, gawky, LD47780P; 99.8 2.8E-18 9.5E-23 125.6 9.4 73 249-327 7-80 (89)
137 2e5h_A Zinc finger CCHC-type a 99.8 2E-18 6.9E-23 131.4 9.1 82 157-238 12-94 (94)
138 3p5t_L Cleavage and polyadenyl 99.8 6.3E-19 2.1E-23 133.1 6.1 81 162-242 2-85 (90)
139 1s79_A Lupus LA protein; RRM, 99.8 1.8E-18 6.3E-23 133.6 8.9 80 158-238 8-87 (103)
140 2d9p_A Polyadenylate-binding p 99.8 3.8E-18 1.3E-22 132.3 10.6 87 155-243 9-96 (103)
141 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.1E-18 1.4E-22 142.5 11.5 86 246-331 36-122 (156)
142 2dnz_A Probable RNA-binding pr 99.8 4.2E-18 1.4E-22 129.9 10.6 84 160-243 4-88 (95)
143 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.3E-18 4.4E-23 130.5 7.5 81 160-240 5-86 (87)
144 3ex7_B RNA-binding protein 8A; 99.8 1.2E-18 4.2E-23 140.2 7.8 88 245-332 18-106 (126)
145 1x5s_A Cold-inducible RNA-bind 99.8 1.9E-18 6.5E-23 133.7 8.6 85 158-242 9-94 (102)
146 2jrs_A RNA-binding protein 39; 99.8 5.5E-18 1.9E-22 132.4 11.2 85 157-241 22-107 (108)
147 2dis_A Unnamed protein product 99.8 2E-18 6.7E-23 135.3 8.6 86 247-332 6-96 (109)
148 2cq1_A PTB-like protein L; RRM 99.8 3.1E-18 1.1E-22 131.5 9.6 82 244-331 10-94 (101)
149 2rs2_A Musashi-1, RNA-binding 99.8 1.9E-18 6.4E-23 135.3 8.4 87 156-242 20-106 (109)
150 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.3E-18 4.3E-23 134.7 7.4 86 158-243 9-95 (102)
151 2m2b_A RNA-binding protein 10; 99.8 1.7E-18 5.7E-23 140.4 8.4 87 156-243 18-111 (131)
152 2dnh_A Bruno-like 5, RNA bindi 99.8 7.4E-18 2.5E-22 131.1 11.7 85 158-243 12-100 (105)
153 2err_A Ataxin-2-binding protei 99.8 3.1E-18 1E-22 134.1 9.5 84 243-328 23-107 (109)
154 2ki2_A SS-DNA binding protein 99.8 3.4E-19 1.2E-23 134.6 3.8 81 250-330 2-82 (90)
155 2dgp_A Bruno-like 4, RNA bindi 99.7 3.1E-18 1.1E-22 133.5 9.2 88 156-243 8-99 (106)
156 1wf1_A RNA-binding protein RAL 99.7 3.9E-18 1.3E-22 133.8 9.8 94 227-328 5-100 (110)
157 1wg5_A Heterogeneous nuclear r 99.7 5.8E-18 2E-22 131.4 10.5 83 158-241 12-95 (104)
158 2dhg_A TRNA selenocysteine ass 99.7 1.3E-17 4.3E-22 129.5 12.4 84 158-242 6-92 (104)
159 2dgv_A HnRNP M, heterogeneous 99.7 4.4E-18 1.5E-22 129.0 9.6 82 246-329 5-87 (92)
160 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.2E-18 4E-23 127.5 6.1 76 250-325 1-76 (77)
161 2x1f_A MRNA 3'-END-processing 99.7 2.4E-18 8.4E-23 131.5 8.2 83 160-242 1-84 (96)
162 2hvz_A Splicing factor, argini 99.7 1.3E-18 4.6E-23 134.3 6.8 92 162-258 1-100 (101)
163 2la6_A RNA-binding protein FUS 99.7 4.7E-18 1.6E-22 130.7 9.7 81 157-237 9-98 (99)
164 1sjq_A Polypyrimidine tract-bi 99.7 4.7E-18 1.6E-22 130.4 9.6 81 158-244 13-96 (105)
165 2div_A TRNA selenocysteine ass 99.7 5.1E-18 1.7E-22 130.5 9.9 83 159-241 7-95 (99)
166 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.2E-18 7.4E-23 128.6 7.5 80 159-238 5-85 (85)
167 1x4e_A RNA binding motif, sing 99.7 5.2E-19 1.8E-23 132.0 4.1 80 247-326 3-83 (85)
168 1p27_B RNA-binding protein 8A; 99.7 3.5E-18 1.2E-22 133.2 8.9 83 158-240 20-103 (106)
169 2hgm_A HNRPF protein, heteroge 99.7 1.1E-18 3.7E-23 139.3 5.9 82 247-330 40-123 (126)
170 2cpe_A RNA-binding protein EWS 99.7 5.1E-18 1.7E-22 133.9 9.6 88 156-243 10-106 (113)
171 2xs2_A Deleted in azoospermia- 99.7 1.7E-18 5.8E-23 134.0 6.8 84 246-331 6-89 (102)
172 2mss_A Protein (musashi1); RNA 99.7 1.8E-18 6.1E-23 125.8 6.5 75 163-237 1-75 (75)
173 1wez_A HnRNP H', FTP-3, hetero 99.7 3.2E-18 1.1E-22 132.2 8.2 82 158-241 12-93 (102)
174 3q2s_C Cleavage and polyadenyl 99.7 3.5E-18 1.2E-22 151.7 9.3 84 248-331 67-153 (229)
175 2cpi_A CCR4-NOT transcription 99.7 6E-18 2E-22 132.9 9.6 83 247-329 13-102 (111)
176 1x4a_A Splicing factor, argini 99.7 1.2E-17 4.1E-22 130.8 11.3 81 246-329 19-100 (109)
177 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.7E-18 9.3E-23 132.3 7.5 84 157-241 15-99 (100)
178 1x4d_A Matrin 3; structural ge 99.7 2.2E-18 7.5E-23 132.3 6.9 78 246-329 12-93 (102)
179 2cpf_A RNA binding motif prote 99.7 4.8E-18 1.6E-22 130.4 8.6 84 160-243 4-91 (98)
180 2cpy_A RNA-binding protein 12; 99.7 2E-18 6.7E-23 136.4 6.6 83 156-239 10-93 (114)
181 1x4e_A RNA binding motif, sing 99.7 3.9E-18 1.3E-22 127.2 7.8 79 160-238 4-83 (85)
182 1fj7_A Nucleolin RBD1, protein 99.7 4.8E-19 1.6E-23 136.8 2.9 83 247-330 15-97 (101)
183 2cq3_A RNA-binding protein 9; 99.7 1.5E-17 5.1E-22 128.9 11.3 87 155-243 9-96 (103)
184 2cqi_A Nucleolysin TIAR; RNA r 99.7 1E-17 3.5E-22 129.8 10.4 86 156-243 10-96 (103)
185 1x5o_A RNA binding motif, sing 99.7 1.4E-17 4.8E-22 131.5 11.3 82 246-328 22-112 (114)
186 1x5t_A Splicing factor 3B subu 99.7 4E-18 1.4E-22 130.3 7.9 84 160-243 4-89 (96)
187 2fy1_A RNA-binding motif prote 99.7 8.8E-18 3E-22 133.0 10.1 83 159-242 5-88 (116)
188 3ucg_A Polyadenylate-binding p 99.7 6.7E-18 2.3E-22 127.1 8.9 81 160-240 5-85 (89)
189 2ad9_A Polypyrimidine tract-bi 99.7 6.2E-18 2.1E-22 133.1 8.9 80 246-331 28-110 (119)
190 3ns6_A Eukaryotic translation 99.7 1.6E-18 5.6E-23 133.5 5.4 81 159-239 4-92 (100)
191 2ywk_A Putative RNA-binding pr 99.7 6.1E-18 2.1E-22 129.0 8.5 82 157-239 12-94 (95)
192 1x4b_A Heterogeneous nuclear r 99.7 5.1E-18 1.8E-22 134.5 8.4 86 158-243 24-109 (116)
193 2cqp_A RNA-binding protein 12; 99.7 3.7E-18 1.3E-22 131.1 6.9 84 157-240 11-95 (98)
194 1oo0_B CG8781-PA, drosophila Y 99.7 4.6E-18 1.6E-22 133.5 7.5 84 158-241 23-107 (110)
195 2do0_A HnRNP M, heterogeneous 99.7 1.9E-17 6.6E-22 130.7 11.2 84 157-241 11-95 (114)
196 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-17 8.8E-22 135.0 12.0 81 245-325 59-140 (140)
197 3n9u_C Cleavage and polyadenyl 99.7 6.7E-18 2.3E-22 140.6 8.5 80 160-239 54-136 (156)
198 2dgu_A Heterogeneous nuclear r 99.7 2.1E-17 7E-22 128.1 10.7 80 246-333 8-88 (103)
199 2dgv_A HnRNP M, heterogeneous 99.7 2.5E-17 8.6E-22 124.8 10.9 82 159-242 6-88 (92)
200 1wex_A Hypothetical protein (r 99.7 9.1E-18 3.1E-22 129.7 8.4 79 246-330 12-93 (104)
201 2fc8_A NCL protein; structure 99.7 1.8E-17 6.2E-22 128.1 10.1 85 244-331 10-95 (102)
202 2kn4_A Immunoglobulin G-bindin 99.7 5.4E-18 1.8E-22 142.1 7.4 135 108-242 12-152 (158)
203 2fc9_A NCL protein; structure 99.7 1.8E-17 6.2E-22 127.9 9.8 81 245-329 11-92 (101)
204 2cq4_A RNA binding motif prote 99.7 4.5E-18 1.5E-22 134.4 6.3 82 158-239 22-103 (114)
205 2ytc_A PRE-mRNA-splicing facto 99.7 3.2E-17 1.1E-21 122.2 10.7 76 245-326 8-85 (85)
206 1iqt_A AUF1, heterogeneous nuc 99.7 3.5E-18 1.2E-22 124.3 5.1 75 163-237 1-75 (75)
207 2lea_A Serine/arginine-rich sp 99.7 6.3E-18 2.2E-22 137.5 6.9 88 156-243 42-130 (135)
208 1wel_A RNA-binding protein 12; 99.7 6E-18 2.1E-22 135.7 6.7 83 157-239 21-103 (124)
209 1p1t_A Cleavage stimulation fa 99.7 4.8E-18 1.7E-22 131.9 5.8 84 159-242 6-90 (104)
210 2jvr_A Nucleolar protein 3; RN 99.7 2E-17 6.7E-22 129.2 9.1 78 248-329 27-106 (111)
211 1l3k_A Heterogeneous nuclear r 99.7 4.6E-17 1.6E-21 141.2 12.4 105 245-349 9-115 (196)
212 2kt5_A RNA and export factor-b 99.7 3.4E-17 1.1E-21 131.4 10.6 85 157-242 31-116 (124)
213 1wex_A Hypothetical protein (r 99.7 3.3E-17 1.1E-21 126.5 10.1 80 158-243 12-94 (104)
214 2ek1_A RNA-binding protein 12; 99.7 3.9E-18 1.3E-22 130.1 4.7 79 160-238 14-93 (95)
215 3ulh_A THO complex subunit 4; 99.7 1.7E-17 5.7E-22 129.5 8.3 81 157-238 25-106 (107)
216 2lcw_A RNA-binding protein FUS 99.6 5.9E-19 2E-23 139.9 0.0 87 246-332 4-99 (116)
217 2hvz_A Splicing factor, argini 99.7 8.4E-18 2.9E-22 129.8 6.4 77 250-331 1-78 (101)
218 1why_A Hypothetical protein ri 99.7 4E-17 1.4E-21 124.9 10.2 78 246-329 14-94 (97)
219 2db1_A Heterogeneous nuclear r 99.7 8.2E-18 2.8E-22 133.6 6.5 80 158-238 14-96 (118)
220 2dgw_A Probable RNA-binding pr 99.7 2.2E-17 7.5E-22 124.8 8.5 82 158-241 7-88 (91)
221 2dnn_A RNA-binding protein 12; 99.7 1E-17 3.6E-22 130.5 6.8 78 159-238 14-91 (109)
222 4f02_A Polyadenylate-binding p 99.7 6.3E-17 2.2E-21 142.5 12.6 101 247-349 13-114 (213)
223 2hgm_A HNRPF protein, heteroge 99.7 2.3E-17 7.8E-22 131.6 8.8 78 159-238 40-119 (126)
224 1x4g_A Nucleolysin TIAR; struc 99.7 2.4E-17 8.1E-22 129.1 8.8 79 247-331 23-102 (109)
225 2cpx_A Hypothetical protein FL 99.7 4E-18 1.4E-22 134.9 4.4 86 246-331 22-108 (115)
226 1x4a_A Splicing factor, argini 99.7 7.6E-17 2.6E-21 126.2 11.6 85 156-243 17-102 (109)
227 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.8E-17 9.6E-22 134.7 9.5 82 156-237 58-140 (140)
228 2a3j_A U1 small nuclear ribonu 99.7 2.6E-17 8.8E-22 131.9 9.0 85 246-333 26-115 (127)
229 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.9E-18 2.7E-22 123.0 5.5 76 162-237 1-76 (77)
230 3lqv_A PRE-mRNA branch site pr 99.7 3E-17 1E-21 129.8 9.3 82 247-331 6-88 (115)
231 2lmi_A GRSF-1, G-rich sequence 99.7 1.3E-17 4.5E-22 130.1 7.0 82 157-239 7-91 (107)
232 3d2w_A TAR DNA-binding protein 99.7 3.5E-17 1.2E-21 123.0 9.1 77 246-330 8-86 (89)
233 3ex7_B RNA-binding protein 8A; 99.7 2.1E-17 7.1E-22 133.0 8.3 86 157-242 18-104 (126)
234 1x4f_A Matrin 3; structural ge 99.7 2.5E-17 8.6E-22 128.2 8.4 78 246-329 22-103 (112)
235 2nlw_A Eukaryotic translation 99.7 2.7E-17 9.4E-22 127.8 8.6 80 247-328 13-100 (105)
236 2j8a_A Histone-lysine N-methyl 99.7 2.4E-17 8.3E-22 128.7 8.0 80 250-329 3-97 (136)
237 2dis_A Unnamed protein product 99.7 4E-17 1.4E-21 127.8 9.4 83 160-242 7-94 (109)
238 2cq1_A PTB-like protein L; RRM 99.7 5.1E-17 1.8E-21 124.7 9.8 81 157-243 11-94 (101)
239 2jwn_A Embryonic polyadenylate 99.7 2.7E-17 9.4E-22 131.9 8.6 82 160-241 35-116 (124)
240 1x4d_A Matrin 3; structural ge 99.7 1.4E-17 4.8E-22 127.7 6.6 77 160-242 14-94 (102)
241 1x4c_A Splicing factor, argini 99.7 7.3E-17 2.5E-21 126.1 10.7 77 247-330 13-95 (108)
242 2la4_A Nuclear and cytoplasmic 99.7 3.3E-17 1.1E-21 126.4 8.5 75 248-328 26-101 (101)
243 2hgl_A HNRPF protein, heteroge 99.7 1.3E-17 4.3E-22 135.3 6.4 80 158-238 41-123 (136)
244 2jvo_A Nucleolar protein 3; nu 99.7 4.7E-17 1.6E-21 127.0 9.4 79 245-331 27-106 (108)
245 2krb_A Eukaryotic translation 99.7 4.2E-17 1.4E-21 120.4 8.7 73 161-235 1-81 (81)
246 2ki2_A SS-DNA binding protein 99.7 7E-18 2.4E-22 127.3 4.5 80 162-242 2-82 (90)
247 4a8x_A RNA-binding protein wit 99.7 1.7E-17 5.9E-22 124.5 6.6 81 160-240 3-85 (88)
248 2cpi_A CCR4-NOT transcription 99.7 2.2E-17 7.5E-22 129.7 7.3 85 158-242 12-103 (111)
249 2dnq_A RNA-binding protein 4B; 99.7 3.5E-17 1.2E-21 123.4 8.2 77 246-330 5-82 (90)
250 2err_A Ataxin-2-binding protei 99.7 1.9E-17 6.5E-22 129.6 6.9 84 155-240 23-107 (109)
251 2nlw_A Eukaryotic translation 99.7 4.1E-17 1.4E-21 126.8 8.7 85 156-242 10-102 (105)
252 3r27_A HnRNP L, heterogeneous 99.7 2.4E-17 8.2E-22 125.2 7.1 77 159-241 19-98 (100)
253 2xnq_A Nuclear polyadenylated 99.7 1.1E-16 3.7E-21 122.5 10.7 75 246-328 19-95 (97)
254 2ad9_A Polypyrimidine tract-bi 99.7 4.3E-17 1.5E-21 128.3 8.6 81 158-244 28-111 (119)
255 2dgx_A KIAA0430 protein; RRM d 99.7 3.5E-17 1.2E-21 125.0 7.9 80 160-242 8-92 (96)
256 1x5o_A RNA binding motif, sing 99.7 1E-16 3.5E-21 126.5 10.7 75 156-231 20-95 (114)
257 2krb_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 123.4 4.9 71 250-322 2-80 (81)
258 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.8E-17 2E-21 135.4 9.6 86 157-242 35-121 (156)
259 2dgt_A RNA-binding protein 30; 99.7 9E-17 3.1E-21 121.7 9.7 78 245-330 6-84 (92)
260 1nu4_A U1A RNA binding domain; 99.7 2.6E-17 8.9E-22 126.0 6.8 82 247-331 6-92 (97)
261 2cpj_A Non-POU domain-containi 99.7 7.7E-17 2.6E-21 123.9 9.3 79 245-329 11-90 (99)
262 2hgn_A Heterogeneous nuclear r 99.7 1.6E-17 5.6E-22 135.0 5.7 83 158-242 43-125 (139)
263 2fc9_A NCL protein; structure 99.7 6.5E-17 2.2E-21 124.8 8.9 83 157-243 11-94 (101)
264 1fjc_A Nucleolin RBD2, protein 99.7 4.1E-17 1.4E-21 124.6 7.6 79 246-329 13-92 (96)
265 2xs2_A Deleted in azoospermia- 99.7 1.6E-17 5.4E-22 128.5 5.2 81 159-241 7-87 (102)
266 2e5j_A Methenyltetrahydrofolat 99.7 8.8E-17 3E-21 123.0 9.4 79 246-329 16-95 (97)
267 2cpd_A Apobec-1 stimulating pr 99.7 1.4E-16 4.9E-21 122.3 10.6 77 245-329 11-90 (99)
268 1fxl_A Paraneoplastic encephal 99.7 1.9E-16 6.4E-21 133.5 12.2 96 249-348 2-98 (167)
269 1fj7_A Nucleolin RBD1, protein 99.7 8.6E-18 2.9E-22 129.7 3.4 84 158-242 14-97 (101)
270 2wbr_A GW182, gawky, LD47780P; 99.7 4.5E-17 1.5E-21 119.2 7.0 72 160-237 6-78 (89)
271 2cpj_A Non-POU domain-containi 99.7 1.1E-16 3.9E-21 122.9 9.3 80 157-242 11-91 (99)
272 2cqh_A IGF-II mRNA-binding pro 99.7 3.7E-17 1.3E-21 124.1 6.4 78 247-331 6-86 (93)
273 3q2s_C Cleavage and polyadenyl 99.7 6.6E-17 2.3E-21 143.4 9.0 80 160-239 67-149 (229)
274 2dnp_A RNA-binding protein 14; 99.7 1.9E-16 6.6E-21 119.3 10.3 76 246-329 6-82 (90)
275 2ytc_A PRE-mRNA-splicing facto 99.7 1.4E-16 4.7E-21 118.8 9.3 76 157-238 8-85 (85)
276 2dha_A FLJ20171 protein; RRM d 99.7 3.8E-17 1.3E-21 130.0 6.6 78 160-238 22-103 (123)
277 2e5g_A U6 snRNA-specific termi 99.7 8.3E-17 2.8E-21 122.4 8.2 79 247-330 6-84 (94)
278 2f3j_A RNA and export factor b 99.7 1.3E-16 4.6E-21 135.7 10.1 83 246-329 85-168 (177)
279 2voo_A Lupus LA protein; RNA-b 99.7 2.2E-16 7.4E-21 136.4 11.4 117 212-329 63-188 (193)
280 2e5j_A Methenyltetrahydrofolat 99.7 1.5E-16 5.1E-21 121.7 9.2 81 156-241 14-95 (97)
281 2a3j_A U1 small nuclear ribonu 99.7 1.3E-16 4.4E-21 127.8 9.2 81 158-241 26-111 (127)
282 2fc8_A NCL protein; structure 99.7 1.1E-16 3.9E-21 123.6 8.5 86 155-243 9-95 (102)
283 1why_A Hypothetical protein ri 99.7 2.3E-16 7.9E-21 120.7 10.1 79 158-242 14-95 (97)
284 1sjr_A Polypyrimidine tract-bi 99.7 1.5E-16 5.1E-21 131.6 9.6 79 247-329 44-125 (164)
285 2dnq_A RNA-binding protein 4B; 99.7 2.9E-16 9.8E-21 118.4 10.5 77 159-243 6-83 (90)
286 3md3_A Nuclear and cytoplasmic 99.7 5.8E-17 2E-21 136.5 7.3 125 108-238 40-165 (166)
287 1whx_A Hypothetical protein ri 99.7 7.8E-17 2.7E-21 126.4 7.3 75 248-328 9-84 (111)
288 2yh0_A Splicing factor U2AF 65 99.7 1.9E-16 6.5E-21 137.5 10.4 134 108-242 50-196 (198)
289 2la4_A Nuclear and cytoplasmic 99.7 1.9E-16 6.6E-21 122.1 8.9 74 160-239 26-100 (101)
290 2g4b_A Splicing factor U2AF 65 99.7 1.2E-16 4.1E-21 135.5 8.4 120 109-237 51-171 (172)
291 1b7f_A Protein (SXL-lethal pro 99.7 2.1E-16 7.3E-21 133.4 9.9 96 248-347 2-98 (168)
292 1x4c_A Splicing factor, argini 99.7 3.3E-16 1.1E-20 122.3 10.3 77 159-242 13-95 (108)
293 3egn_A RNA-binding protein 40; 99.7 4E-17 1.4E-21 134.3 5.1 86 246-331 42-133 (143)
294 2e44_A Insulin-like growth fac 99.7 1.9E-16 6.6E-21 120.8 8.4 79 247-329 13-93 (96)
295 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.4E-16 4.8E-21 134.3 8.1 85 158-242 69-154 (165)
296 2cpx_A Hypothetical protein FL 99.7 7.3E-17 2.5E-21 127.6 5.9 86 158-243 22-108 (115)
297 1wg1_A KIAA1579 protein, homol 99.7 2.3E-16 7.8E-21 118.4 8.3 74 248-328 4-78 (88)
298 1wf0_A TDP-43, TAR DNA-binding 99.7 4.5E-17 1.5E-21 122.3 4.1 77 248-330 4-80 (88)
299 2kvi_A Nuclear polyadenylated 99.7 1E-16 3.6E-21 122.4 6.2 78 246-331 7-86 (96)
300 2i2y_A Fusion protein consists 99.7 2.3E-16 8E-21 130.8 8.8 121 115-241 19-149 (150)
301 1x5p_A Negative elongation fac 99.7 4.4E-16 1.5E-20 119.1 9.7 77 246-330 12-89 (97)
302 1x4f_A Matrin 3; structural ge 99.7 1.2E-16 4.2E-21 124.3 6.5 79 158-242 22-104 (112)
303 2e5g_A U6 snRNA-specific termi 99.6 1.2E-15 4.1E-20 115.9 11.8 78 160-242 7-84 (94)
304 2lcw_A RNA-binding protein FUS 99.5 1.2E-17 4.1E-22 132.3 0.0 85 158-242 4-97 (116)
305 3zzy_A Polypyrimidine tract-bi 99.6 8.5E-16 2.9E-20 122.4 10.7 78 247-329 26-107 (130)
306 1x4g_A Nucleolysin TIAR; struc 99.6 4.1E-16 1.4E-20 122.0 8.8 79 159-243 23-102 (109)
307 2qfj_A FBP-interacting repress 99.6 5.7E-16 1.9E-20 136.4 10.4 102 248-349 27-136 (216)
308 2cq2_A Hypothetical protein LO 99.6 4E-16 1.4E-20 121.5 7.9 77 247-329 23-107 (114)
309 2e5i_A Heterogeneous nuclear r 99.6 1.9E-15 6.6E-20 119.9 12.0 76 248-329 24-103 (124)
310 2hzc_A Splicing factor U2AF 65 99.6 6.7E-16 2.3E-20 115.5 8.9 72 247-324 4-86 (87)
311 2cpd_A Apobec-1 stimulating pr 99.6 1.5E-15 5.1E-20 116.6 11.0 77 158-242 12-91 (99)
312 2jvr_A Nucleolar protein 3; RN 99.6 1.5E-16 5.2E-21 124.1 5.3 77 160-240 27-105 (111)
313 2pe8_A Splicing factor 45; RRM 99.6 1.7E-15 5.9E-20 117.1 11.2 84 247-330 6-96 (105)
314 2jvo_A Nucleolar protein 3; nu 99.6 4.2E-16 1.4E-20 121.5 7.7 79 156-242 26-105 (108)
315 2cjk_A Nuclear polyadenylated 99.6 6.1E-16 2.1E-20 130.5 9.3 84 248-332 2-85 (167)
316 2dgu_A Heterogeneous nuclear r 99.6 6.5E-16 2.2E-20 119.5 8.4 77 159-243 9-86 (103)
317 2xnq_A Nuclear polyadenylated 99.6 6.9E-16 2.4E-20 117.9 8.3 76 157-240 18-95 (97)
318 2f3j_A RNA and export factor b 99.6 8.8E-16 3E-20 130.6 9.4 83 157-240 84-167 (177)
319 1nu4_A U1A RNA binding domain; 99.6 2.3E-16 7.8E-21 120.7 4.8 81 159-242 6-91 (97)
320 1fjc_A Nucleolin RBD2, protein 99.6 3.3E-16 1.1E-20 119.5 5.6 81 157-242 12-93 (96)
321 3d2w_A TAR DNA-binding protein 99.6 5.2E-16 1.8E-20 116.5 6.5 78 158-241 8-85 (89)
322 2dgt_A RNA-binding protein 30; 99.6 1.2E-15 4E-20 115.5 8.4 78 158-243 7-85 (92)
323 2dnl_A Cytoplasmic polyadenyla 99.6 9.7E-16 3.3E-20 120.8 7.9 78 247-327 6-87 (114)
324 1x5p_A Negative elongation fac 99.6 3.7E-15 1.3E-19 113.9 10.9 78 158-243 12-90 (97)
325 2e44_A Insulin-like growth fac 99.6 1.1E-15 3.8E-20 116.6 7.9 79 159-241 13-93 (96)
326 1sjr_A Polypyrimidine tract-bi 99.6 2.1E-15 7.2E-20 124.7 10.0 79 160-242 45-126 (164)
327 1wf1_A RNA-binding protein RAL 99.6 2E-15 6.9E-20 118.2 9.3 76 159-242 25-102 (110)
328 3beg_B Splicing factor, argini 99.6 7E-16 2.4E-20 121.8 6.7 75 248-329 15-95 (115)
329 2kvi_A Nuclear polyadenylated 99.6 9.5E-16 3.2E-20 117.0 7.2 76 159-242 8-85 (96)
330 2dnp_A RNA-binding protein 14; 99.6 1.4E-15 4.8E-20 114.6 8.0 77 158-242 6-83 (90)
331 2j8a_A Histone-lysine N-methyl 99.6 5.8E-16 2E-20 121.0 5.9 78 162-239 3-95 (136)
332 1whx_A Hypothetical protein ri 99.6 5.1E-16 1.8E-20 121.7 5.6 75 160-240 9-84 (111)
333 2diu_A KIAA0430 protein; struc 99.6 1.4E-15 4.8E-20 112.3 7.0 72 249-330 8-86 (96)
334 2bz2_A Negative elongation fac 99.6 1.7E-15 6E-20 120.5 7.6 78 246-331 36-114 (121)
335 2cqh_A IGF-II mRNA-binding pro 99.6 9.6E-16 3.3E-20 116.2 5.5 77 159-242 6-85 (93)
336 2dnl_A Cytoplasmic polyadenyla 99.6 2.1E-15 7.4E-20 118.8 7.5 76 160-237 7-85 (114)
337 2hzc_A Splicing factor U2AF 65 99.6 2E-15 6.9E-20 112.9 6.9 71 160-236 5-86 (87)
338 1wf0_A TDP-43, TAR DNA-binding 99.6 1.4E-15 4.7E-20 114.1 5.9 78 160-243 4-81 (88)
339 3tyt_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 129.9 9.7 76 248-328 3-80 (205)
340 2diu_A KIAA0430 protein; struc 99.6 7.9E-15 2.7E-19 108.3 9.3 73 160-242 7-86 (96)
341 3u1l_A PRE-mRNA-splicing facto 99.6 6E-15 2E-19 130.2 9.9 106 220-331 104-232 (240)
342 1wg1_A KIAA1579 protein, homol 99.6 1.7E-15 5.9E-20 113.5 5.5 75 160-241 4-79 (88)
343 2cq2_A Hypothetical protein LO 99.6 2.1E-15 7.2E-20 117.4 6.1 73 160-238 24-104 (114)
344 1fje_B Nucleolin RBD12, protei 99.6 2E-15 7E-20 128.3 6.4 121 108-240 53-174 (175)
345 3nmr_A Cugbp ELAV-like family 99.6 5.5E-15 1.9E-19 125.4 9.0 98 248-348 2-105 (175)
346 2e5i_A Heterogeneous nuclear r 99.6 2.6E-14 9.1E-19 113.3 11.9 76 160-241 24-103 (124)
347 3beg_B Splicing factor, argini 99.6 3.7E-15 1.3E-19 117.6 7.0 71 160-237 15-86 (115)
348 3zzy_A Polypyrimidine tract-bi 99.6 6.5E-15 2.2E-19 117.3 8.1 78 160-242 27-108 (130)
349 3egn_A RNA-binding protein 40; 99.6 5.4E-16 1.9E-20 127.5 1.8 81 159-242 43-132 (143)
350 2dit_A HIV TAT specific factor 99.5 1.6E-14 5.4E-19 113.5 9.3 82 245-330 11-104 (112)
351 2voo_A Lupus LA protein; RNA-b 99.5 9.2E-15 3.2E-19 126.2 8.7 80 160-240 108-187 (193)
352 3pgw_A U1-A; protein-RNA compl 99.5 1.4E-14 4.8E-19 133.0 10.4 82 246-330 6-92 (282)
353 3pgw_S U1-70K; protein-RNA com 99.5 9.3E-15 3.2E-19 141.7 9.3 82 159-240 100-182 (437)
354 3v4m_A Splicing factor U2AF 65 99.5 2.8E-14 9.5E-19 110.3 8.9 83 248-330 4-99 (105)
355 2pe8_A Splicing factor 45; RRM 99.5 2.4E-14 8.3E-19 110.6 8.0 80 160-239 7-93 (105)
356 2bz2_A Negative elongation fac 99.5 1.8E-14 6E-19 114.6 7.4 77 158-242 36-113 (121)
357 3sde_A Paraspeckle component 1 99.5 6.2E-14 2.1E-18 127.2 11.9 77 245-327 18-95 (261)
358 3ue2_A Poly(U)-binding-splicin 99.5 5.5E-14 1.9E-18 110.8 8.9 82 248-329 19-110 (118)
359 2adc_A Polypyrimidine tract-bi 99.5 5.5E-14 1.9E-18 125.0 8.9 126 109-239 72-227 (229)
360 1qm9_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 123.1 7.5 126 109-239 41-196 (198)
361 1jmt_A Splicing factor U2AF 35 99.5 2.2E-14 7.4E-19 110.8 4.9 71 254-325 20-103 (104)
362 3u1l_A PRE-mRNA-splicing facto 99.5 6.2E-14 2.1E-18 123.8 6.6 79 158-242 131-231 (240)
363 2dit_A HIV TAT specific factor 99.5 2.7E-13 9.1E-18 106.4 9.6 82 157-242 11-104 (112)
364 2d9o_A DNAJ (HSP40) homolog, s 99.4 1E-12 3.5E-17 100.2 10.0 65 259-329 27-91 (100)
365 3v4m_A Splicing factor U2AF 65 99.4 3.9E-13 1.3E-17 103.8 5.5 79 160-238 4-95 (105)
366 3s6e_A RNA-binding protein 39; 99.4 1.8E-12 6.2E-17 101.3 9.3 81 248-332 6-97 (114)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 8.9E-12 3.1E-16 94.9 11.8 76 161-242 10-92 (100)
368 1jmt_A Splicing factor U2AF 35 99.3 2.7E-13 9.2E-18 104.6 2.5 71 166-237 20-103 (104)
369 3ue2_A Poly(U)-binding-splicin 99.3 9E-13 3.1E-17 103.8 5.4 79 160-238 19-107 (118)
370 3tht_A Alkylated DNA repair pr 99.3 5.9E-12 2E-16 117.1 9.3 75 246-326 15-97 (345)
371 2dnr_A Synaptojanin-1; RRM dom 99.2 4.3E-11 1.5E-15 87.5 7.8 73 248-328 6-86 (91)
372 3tht_A Alkylated DNA repair pr 99.2 2.1E-11 7.3E-16 113.3 7.3 63 159-227 16-81 (345)
373 1owx_A Lupus LA protein, SS-B, 99.1 6.3E-11 2.2E-15 92.6 7.0 80 246-331 15-99 (121)
374 3s6e_A RNA-binding protein 39; 99.1 5.1E-11 1.7E-15 93.0 5.7 75 160-238 6-91 (114)
375 1ufw_A Synaptojanin 2; RNP dom 99.0 6E-10 2E-14 81.8 7.0 72 247-326 13-93 (95)
376 2dnr_A Synaptojanin-1; RRM dom 98.9 1.3E-09 4.4E-14 79.7 5.9 72 160-239 6-85 (91)
377 2l9w_A U4/U6 snRNA-associated- 98.9 8.7E-09 3E-13 77.0 10.0 73 247-325 19-97 (117)
378 1owx_A Lupus LA protein, SS-B, 98.9 2.7E-09 9.3E-14 83.3 6.9 70 159-234 16-90 (121)
379 3dxb_A Thioredoxin N-terminall 98.9 3E-09 1E-13 93.7 7.9 72 260-331 140-216 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 6.5E-09 2.2E-13 76.3 3.6 71 160-238 14-93 (95)
381 3dxb_A Thioredoxin N-terminall 98.7 2.5E-08 8.6E-13 87.7 6.1 79 160-238 123-211 (222)
382 2dhx_A Poly (ADP-ribose) polym 98.5 1.5E-06 5.3E-11 64.5 11.1 88 160-262 7-99 (104)
383 2dhx_A Poly (ADP-ribose) polym 98.2 1.3E-05 4.3E-10 59.6 9.9 91 248-354 7-102 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.2 2.4E-06 8.2E-11 63.9 6.0 70 160-235 20-95 (117)
385 1wey_A Calcipressin 1; structu 97.7 8.2E-05 2.8E-09 55.5 6.5 74 249-328 5-84 (104)
386 1wwh_A Nucleoporin 35, nucleop 97.7 0.00027 9.4E-09 54.3 9.0 79 247-332 22-101 (119)
387 1whv_A Poly(A)-specific ribonu 97.5 0.00047 1.6E-08 50.5 7.6 53 248-309 15-67 (100)
388 1uw4_A UPF3X; nonsense mediate 97.4 0.00042 1.4E-08 50.8 7.2 67 250-316 2-71 (91)
389 1uw4_A UPF3X; nonsense mediate 97.4 0.00062 2.1E-08 49.9 7.4 66 162-227 2-70 (91)
390 1whv_A Poly(A)-specific ribonu 97.3 0.00088 3E-08 49.1 7.8 53 160-221 15-67 (100)
391 1wwh_A Nucleoporin 35, nucleop 97.3 0.00071 2.4E-08 51.9 7.2 73 158-237 21-94 (119)
392 1wey_A Calcipressin 1; structu 97.1 0.00066 2.3E-08 50.6 4.9 73 161-239 5-83 (104)
393 3ctr_A Poly(A)-specific ribonu 97.0 0.00055 1.9E-08 50.3 3.9 52 249-309 6-57 (101)
394 3ctr_A Poly(A)-specific ribonu 97.0 0.0013 4.6E-08 48.3 5.7 52 161-221 6-57 (101)
395 3p3d_A Nucleoporin 53; structu 96.8 0.0017 5.8E-08 50.5 5.4 79 249-328 7-99 (132)
396 3pq1_A Poly(A) RNA polymerase; 96.5 0.0025 8.5E-08 61.2 5.5 57 160-222 52-108 (464)
397 2l08_A Regulator of nonsense t 96.3 0.0032 1.1E-07 46.4 3.6 69 248-316 8-79 (97)
398 2l08_A Regulator of nonsense t 96.3 0.0041 1.4E-07 45.8 4.1 68 160-227 8-78 (97)
399 3pq1_A Poly(A) RNA polymerase; 96.1 0.0023 7.9E-08 61.4 2.7 59 248-312 52-110 (464)
400 3p3d_A Nucleoporin 53; structu 95.9 0.0029 9.8E-08 49.2 2.1 77 160-237 6-96 (132)
401 3d45_A Poly(A)-specific ribonu 88.1 1.4 4.7E-05 43.0 8.3 53 248-309 439-491 (507)
402 3d45_A Poly(A)-specific ribonu 86.9 1.3 4.6E-05 43.1 7.4 53 160-221 439-491 (507)
403 2g0c_A ATP-dependent RNA helic 71.2 5.6 0.00019 27.3 4.4 60 259-326 11-75 (76)
404 4e8u_A Putative uncharacterize 62.6 20 0.0007 29.0 6.6 55 251-308 14-80 (172)
405 3lpe_A Putative transcription 62.0 41 0.0014 24.1 8.1 30 187-221 39-68 (92)
406 2v94_A RPS24, 30S ribosomal pr 59.4 7.3 0.00025 29.0 3.2 48 259-307 37-89 (107)
407 2g1d_A 30S ribosomal protein S 55.1 6.9 0.00023 28.6 2.3 49 259-308 29-82 (98)
408 1xn9_A 30S ribosomal protein S 54.7 41 0.0014 24.6 6.5 49 259-308 28-81 (101)
409 2xzm_P RPS24E; ribosome, trans 50.5 15 0.0005 29.0 3.7 48 259-307 31-83 (149)
410 3u5c_Y RP50, 40S ribosomal pro 48.7 12 0.00041 29.0 2.9 48 259-307 33-85 (135)
411 1ywx_A 30S ribosomal protein S 48.3 51 0.0017 24.2 6.1 48 259-307 28-80 (102)
412 4eyt_A Telomerase associated p 48.0 70 0.0024 22.6 9.4 77 248-332 11-95 (129)
413 1wfb_A Antifreeze protein isof 41.1 46 0.0016 18.4 4.3 8 367-374 17-24 (38)
414 3bb5_A Stress responsive alpha 39.7 1.2E+02 0.0039 22.8 7.4 59 250-308 22-91 (121)
415 3fry_A Probable copper-exporti 37.2 85 0.0029 20.4 6.3 58 249-313 6-63 (73)
416 2qyc_A Ferredoxin-like protein 36.4 1.1E+02 0.0037 22.0 6.6 55 252-307 8-72 (103)
417 3bgu_A Ferredoxin-like protein 35.4 1.3E+02 0.0043 22.3 6.9 58 250-308 23-90 (116)
418 2w7a_A LINE-1 ORF1P; RNA-bindi 35.4 1.3E+02 0.0043 22.0 6.5 75 249-323 3-98 (100)
419 2g0c_A ATP-dependent RNA helic 32.8 1.1E+02 0.0038 20.4 5.8 66 163-237 2-74 (76)
420 1tr0_A Stable protein 1; plant 30.7 1.3E+02 0.0045 21.7 6.3 57 251-307 11-80 (108)
421 3iz6_U 40S ribosomal protein S 30.7 33 0.0011 26.7 2.8 48 260-308 39-92 (138)
422 3ts2_A Protein LIN-28 homolog 30.0 7.8 0.00027 30.8 -0.9 29 176-212 2-30 (148)
423 1q4r_A Protein AT3G17210; cent 29.5 1.6E+02 0.0056 21.4 6.9 58 251-308 13-81 (112)
424 2i9x_A Putative septation prot 27.8 75 0.0025 22.5 4.0 26 187-212 5-30 (87)
425 3mfb_A Uncharacterized protein 27.0 93 0.0032 24.7 4.9 37 173-209 3-42 (157)
426 3mfb_A Uncharacterized protein 26.6 93 0.0032 24.7 4.9 37 261-297 3-42 (157)
427 2i9x_A Putative septation prot 26.5 80 0.0027 22.4 4.0 26 275-300 5-30 (87)
428 2e5p_A Protein PHF1, PHD finge 24.8 25 0.00085 23.4 1.0 10 291-300 37-46 (68)
429 3swz_A Steroid 17-alpha-hydrox 24.5 62 0.0021 30.5 4.3 60 251-319 16-79 (494)
430 2gu3_A YPMB protein; APC1927, 24.3 97 0.0033 23.9 4.6 49 252-300 65-127 (136)
431 3h7h_B Transcription elongatio 24.3 1.1E+02 0.0039 22.4 4.7 30 187-221 40-69 (106)
432 2ia9_A Putative septation prot 24.1 92 0.0031 22.7 4.0 26 187-212 5-30 (100)
433 2i9z_A Putative septation prot 23.5 97 0.0033 22.8 4.1 26 187-212 5-30 (105)
434 3tbg_A Cytochrome P450 2D6; mo 23.1 55 0.0019 30.6 3.6 57 253-318 20-79 (479)
435 3bn7_A Ferredoxin-like protein 22.8 2.1E+02 0.0071 21.3 6.1 57 251-307 23-92 (120)
436 2ia9_A Putative septation prot 22.8 99 0.0034 22.5 4.0 26 275-300 5-30 (100)
437 2i9z_A Putative septation prot 22.3 1E+02 0.0036 22.6 4.1 26 275-300 5-30 (105)
438 4e8u_A Putative uncharacterize 21.9 1.6E+02 0.0054 23.8 5.4 46 173-221 33-81 (172)
439 3bde_A MLL5499 protein; stress 21.8 2.5E+02 0.0085 20.9 6.4 57 251-307 23-87 (120)
440 3bgu_A Ferredoxin-like protein 21.6 2.5E+02 0.0084 20.7 6.4 56 162-218 23-88 (116)
441 3swz_A Steroid 17-alpha-hydrox 21.5 96 0.0033 29.2 5.0 61 162-231 15-79 (494)
442 1fme_A FSD-EY peptide; beta-BE 21.5 56 0.0019 16.9 1.7 13 262-274 14-26 (28)
443 2eqj_A Metal-response element- 21.3 43 0.0015 22.3 1.6 10 291-300 41-50 (66)
444 2x4i_A CAG38848, uncharacteriz 21.1 1.9E+02 0.0065 21.5 5.3 67 207-283 41-113 (114)
445 3jyw_P 60S ribosomal protein L 21.1 52 0.0018 26.7 2.4 11 173-183 35-45 (176)
446 2m0o_A PHD finger protein 1; t 21.1 32 0.0011 23.6 1.0 10 291-300 54-63 (79)
447 1rjj_A Expressed protein; beta 20.1 2.3E+02 0.0078 20.5 5.8 70 257-326 14-100 (111)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.4e-37 Score=271.51 Aligned_cols=177 Identities=38% Similarity=0.742 Sum_probs=154.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKH 236 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~ 236 (398)
+....++|||+|||.++|+++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|.+|++.++..++|+.|.+.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 44578999999999999999999999999999999999999999999999999999999999999989999999999998
Q ss_pred CCCCCCCc---cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCc
Q psy6490 237 ATPKNRPK---IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFH 313 (398)
Q Consensus 237 ~~~~~~~~---~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~ 313 (398)
+....... .....++|||+|||.++|+++|+++|+.||.|++|+|+++..++.++|||||+|.+.++|.+|++.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~ 168 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH 168 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCC
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCc
Confidence 87654322 233457899999999999999999999999999999999988999999999999999999888888999
Q ss_pred eeCCEEEEEEecCchHHHhh
Q psy6490 314 MIKNKKVECKKAQPKEAVQA 333 (398)
Q Consensus 314 ~i~g~~i~v~~a~~k~~~~~ 333 (398)
.|+|+.|+|.|+.++++...
T Consensus 169 ~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 169 TVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp EETTEECEEEECC-------
T ss_pred EECCEEEEEEecCChhHhcc
Confidence 99999999999999887654
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.3e-37 Score=273.93 Aligned_cols=174 Identities=22% Similarity=0.437 Sum_probs=154.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
.+.++|||+|||.++|+++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|.+|++ +++..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 367899999999999999999999999999999999999999999999999999999999998 8999999999998887
Q ss_pred CCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC
Q psy6490 238 TPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK 316 (398)
Q Consensus 238 ~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~ 316 (398)
...... .....++|||+||++++|+++|+++|++||.|++|+|++|. +.++|||||+|.+.++|++|+ +|||..|+
T Consensus 93 ~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 93 QRDPSL-RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCTHH-HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cccccc-cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 654432 22345689999999999999999999999999999999984 457999999999988776665 69999999
Q ss_pred CEEEEEEecCchHHHhhhh
Q psy6490 317 NKKVECKKAQPKEAVQANL 335 (398)
Q Consensus 317 g~~i~v~~a~~k~~~~~~~ 335 (398)
|+.|+|.|+.++.++....
T Consensus 170 g~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 170 DRKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp TEECEEEECCCHHHHHHHH
T ss_pred CEEEEEEEcCCCcccchhh
Confidence 9999999999988776543
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4.4e-37 Score=261.41 Aligned_cols=165 Identities=48% Similarity=0.964 Sum_probs=153.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~ 239 (398)
++++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|++|++. ...++|+.|.+.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999994 5689999999988765
Q ss_pred CCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEE
Q psy6490 240 KNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKK 319 (398)
Q Consensus 240 ~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~ 319 (398)
+. .....++|||+|||.++++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|+++++..|+|+.
T Consensus 81 ~~---~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 157 (167)
T 2cjk_A 81 RD---EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK 157 (167)
T ss_dssp HH---HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC
T ss_pred hh---hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE
Confidence 43 234567899999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EEEEecCch
Q psy6490 320 VECKKAQPK 328 (398)
Q Consensus 320 i~v~~a~~k 328 (398)
|+|.|+.+|
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999876
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=249.77 Aligned_cols=163 Identities=19% Similarity=0.395 Sum_probs=149.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPK 240 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~ 240 (398)
++|||+|||.++|+++|+++|+.||.|.++++++++ +++++|||||+|.+.++|.+|++ +++..+.|+.|.+.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999987 57799999999999999999995 8999999999999988765
Q ss_pred CCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEE
Q psy6490 241 NRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKK 319 (398)
Q Consensus 241 ~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~ 319 (398)
.. ......++|||+|||.++|+++|+++|++||.|.++.++++..++.++|||||+|.+.++|.+|+ +|||..|+|+.
T Consensus 80 ~~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 80 QQ-SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC-CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC-CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 54 33456788999999999999999999999999999999999999999999999999988777766 59999999999
Q ss_pred EEEEecC
Q psy6490 320 VECKKAQ 326 (398)
Q Consensus 320 i~v~~a~ 326 (398)
|+|.|++
T Consensus 159 i~v~~a~ 165 (166)
T 3md3_A 159 LRINWAA 165 (166)
T ss_dssp CEEEESC
T ss_pred EEEEecC
Confidence 9999986
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.2e-35 Score=261.56 Aligned_cols=170 Identities=22% Similarity=0.503 Sum_probs=152.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
..++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++ +++..++|+.|.|.+..
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 56899999999999999999999999999999999999899999999999999999999999 89999999999998876
Q ss_pred CCCCCc--------cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-H
Q psy6490 239 PKNRPK--------IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-E 309 (398)
Q Consensus 239 ~~~~~~--------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~ 309 (398)
...... .....++|||+|||.++|+++|+++|++||.|++|+|+++..+++++|||||+|.+.++|.+|+ .
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 554321 2245679999999999999999999999999999999999999999999999999987776666 5
Q ss_pred HCCceeCCEEEEEEecCchH
Q psy6490 310 IHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 310 l~~~~i~g~~i~v~~a~~k~ 329 (398)
|||..|+|+.|+|.|+.++.
T Consensus 187 l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCS
T ss_pred ccCCEeCCcEEEEEEecCCC
Confidence 99999999999999998764
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.8e-35 Score=249.60 Aligned_cols=163 Identities=20% Similarity=0.385 Sum_probs=151.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
++++|||+|||.++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999999899999999999999999999998 89999999999999987
Q ss_pred CCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCC
Q psy6490 239 PKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKN 317 (398)
Q Consensus 239 ~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g 317 (398)
.... ....++|||+|||.++++++|+++|++||.|.++++.++..++.++|||||+|.+.++|.+++ .|||..|+|
T Consensus 82 ~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 82 PGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCSS---TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCcc---cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 6543 345678999999999999999999999999999999999889999999999999987776666 599999988
Q ss_pred --EEEEEEec
Q psy6490 318 --KKVECKKA 325 (398)
Q Consensus 318 --~~i~v~~a 325 (398)
+.|+|+||
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6.2e-35 Score=247.84 Aligned_cols=162 Identities=26% Similarity=0.488 Sum_probs=149.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCC
Q psy6490 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 161 ~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~ 239 (398)
+++|||+|||.++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|++ +++..++|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999999999999999999999999999999998 899999999999998876
Q ss_pred CCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCE
Q psy6490 240 KNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNK 318 (398)
Q Consensus 240 ~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~ 318 (398)
... ....++|||+|||.++++++|+++|++||.|.++++.++..+|.++|||||+|.+.++|.+|+ +|||..|+|+
T Consensus 82 ~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 82 SSA---SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCG---GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred Ccc---cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 543 345678999999999999999999999999999999999889999999999999988776665 5999999997
Q ss_pred E--EEEEec
Q psy6490 319 K--VECKKA 325 (398)
Q Consensus 319 ~--i~v~~a 325 (398)
. |+|+||
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 888886
No 8
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.4e-34 Score=265.96 Aligned_cols=211 Identities=13% Similarity=0.178 Sum_probs=185.8
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGA 187 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~ 187 (398)
..++++..+.+...+..++..+++....+....+... ...++|||+|||.++|+++|+++|+.||.
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~--------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 121 (284)
T 3smz_A 56 YKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ--------------PTDALLCVANLPPSLTQQQFEELVRPFGS 121 (284)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC--------------CCSCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec--------------CCCCEEEEcCCCCcCCHHHHHHHHHhcCC
Confidence 3467889999999999888777766555555555431 14589999999999999999999999999
Q ss_pred EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCCCCccCccccceeecCCCCCC-CHHH
Q psy6490 188 VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRPKIGNRTKKIFVGGVSQDT-SAEE 265 (398)
Q Consensus 188 i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~V~nLp~~~-tee~ 265 (398)
|.++++++++.+|.++|||||+|.+.++|.+|++ +++..++|+.|.|.++..+.........++|||+|||.++ |+++
T Consensus 122 i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~ 201 (284)
T 3smz_A 122 LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDA 201 (284)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHH
T ss_pred eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHH
Confidence 9999999999999999999999999999999995 8999999999999999887766666778899999999995 9999
Q ss_pred HHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCchHHHhh
Q psy6490 266 VKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPKEAVQA 333 (398)
Q Consensus 266 L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k~~~~~ 333 (398)
|+++|+.||.|.+|+|.++. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+.++..++.
T Consensus 202 l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 269 (284)
T 3smz_A 202 LCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS 269 (284)
T ss_dssp HHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHH
T ss_pred HHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccc
Confidence 99999999999999999985 7999999999999987776665 6999999999999999998876543
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.5e-33 Score=239.84 Aligned_cols=164 Identities=25% Similarity=0.421 Sum_probs=141.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCC--CcccEEEEEEcChHhHHHHHh-CCCcccC---CcccC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQ--RSRGFGFITFAEPETVEKVLK-VPIHTLD---GKKID 233 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~--~~~g~afV~f~~~e~a~~al~-~~~~~~~---g~~l~ 233 (398)
+.++|||+|||.++|+++|+++|++||.|.+|++++++.++ +++|||||+|.+.++|++|++ +++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998877 899999999999999999997 7776654 34444
Q ss_pred CCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCC
Q psy6490 234 PKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHF 312 (398)
Q Consensus 234 v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~ 312 (398)
+.+..... ......++|||+|||.++|+++|+++|++||.|+++++.++. +|.++|||||+|.+.++|.+|+ .|||
T Consensus 82 ~~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEK--NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGC--CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Eccccccc--cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 44443322 234467889999999999999999999999999999999995 6899999999999987776665 7999
Q ss_pred ceeC---CEEEEEEecC
Q psy6490 313 HMIK---NKKVECKKAQ 326 (398)
Q Consensus 313 ~~i~---g~~i~v~~a~ 326 (398)
..+. |+.|+|+||.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999984
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=4.6e-33 Score=237.71 Aligned_cols=158 Identities=19% Similarity=0.421 Sum_probs=142.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMF----G-------AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLD 228 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~ 228 (398)
+.++|||+|||.++|+++|+++|++| | .|.++++.+ ++|||||+|.+.++|++|+.+++..++
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 57999999999999999999999999 6 778887754 489999999999999999999999999
Q ss_pred CcccCCCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q psy6490 229 GKKIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 229 g~~l~v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
|+.|.+.++..... ....++|||+|||.++|+++|+++|++||.|.++++.+++.+|.++|||||+|.+.++|.+++
T Consensus 77 g~~i~v~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP---LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp TEECEEECCSSCCC---CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred CceeeecCCcccCC---CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 99999998765433 334788999999999999999999999999999999999889999999999999977776655
Q ss_pred -HHCCceeCCEEEEEEecC
Q psy6490 309 -EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 309 -~l~~~~i~g~~i~v~~a~ 326 (398)
.|||..|+|+.|+|+||.
T Consensus 154 ~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 154 AGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHTTCEETTEECEEEECC
T ss_pred HHcCCCEECCeEEEEEeCC
Confidence 599999999999999973
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1e-33 Score=242.58 Aligned_cols=165 Identities=21% Similarity=0.318 Sum_probs=144.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKH 236 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~ 236 (398)
.....++|||+|||.++|+++|+++|+.||.+.. .++.+..+++++|||||+|.+.++|.+|+++++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 3447899999999999999999999999997766 344455578899999999999999999999999999999999999
Q ss_pred CCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCcee
Q psy6490 237 ATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMI 315 (398)
Q Consensus 237 ~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i 315 (398)
+..+.. ......++|||+|||.++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+ .|||..|
T Consensus 88 ~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 88 PKGRDS-KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp CCCSSC-STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred CCCccc-cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 876544 234467899999999999999999999999988765 467899999999999988777666 5999999
Q ss_pred CCEEEEEEecCch
Q psy6490 316 KNKKVECKKAQPK 328 (398)
Q Consensus 316 ~g~~i~v~~a~~k 328 (398)
+|+.|+|+|+.+|
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 9999999999876
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2.2e-32 Score=238.88 Aligned_cols=164 Identities=18% Similarity=0.409 Sum_probs=143.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMF----G-------AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLD 228 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~ 228 (398)
.+++|||+|||.++|+++|+++|+.| | .|.++++. +++|||||+|.+.++|++|+++++..++
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 57999999999999999999999999 5 66666664 3589999999999999999999999999
Q ss_pred CcccCCCCCCCCCCCc-----------------cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcc
Q psy6490 229 GKKIDPKHATPKNRPK-----------------IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHR 291 (398)
Q Consensus 229 g~~l~v~~~~~~~~~~-----------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~k 291 (398)
|+.|.|.++....... .....++|||+|||.++++++|+++|++||.|.+|++.++..++.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 9999999876542211 12456899999999999999999999999999999999998899999
Q ss_pred eEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCchH
Q psy6490 292 GFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 292 g~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k~ 329 (398)
|||||+|.+.++|.+++ .|||..|+|+.|+|.|+.++.
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999977666655 699999999999999998764
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.2e-33 Score=259.37 Aligned_cols=204 Identities=14% Similarity=0.218 Sum_probs=169.6
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCC-
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFG- 186 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G- 186 (398)
..+++++.+.+...+..++. +++....+....+... ..++|||+|||.++++++|+++|+.||
T Consensus 80 ~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~---------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 143 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL---------------TECTLWMTNFPPSYTQRNIRDLLQDINV 143 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC---------------CSCEEEEECCCTTCCHHHHHHHHHHTTC
T ss_pred CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC---------------CCCEEEEECCCCCCCHHHHHHHHHHhCC
Confidence 45788999999999999994 7766555554444321 578999999999999999999999999
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCCCCc----cCccccceeecCCCCC-
Q psy6490 187 AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRPK----IGNRTKKIFVGGVSQD- 260 (398)
Q Consensus 187 ~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~~~~----~~~~~~~l~V~nLp~~- 260 (398)
.|.+|++++++. |.++|||||+|.+.++|.+|++ +++..++|+.|.|.++.+..... .....++|||+|||.+
T Consensus 144 ~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 222 (292)
T 2ghp_A 144 VALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTEL 222 (292)
T ss_dssp CCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTT
T ss_pred CeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCccc
Confidence 999999998875 7899999999999999999999 99999999999999887655432 3346689999999999
Q ss_pred CCHHHHHHHHhhcCCeeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCch
Q psy6490 261 TSAEEVKAYFSQFGKVEETVMLMDQQ-TKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 261 ~tee~L~~~F~~~G~i~~v~i~~~~~-~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~k 328 (398)
+|+++|+++|+.||.|.+|+|+++.. ++.++|||||+|.+.++|.+|+.|||..|+|+.|+|.|+.+|
T Consensus 223 ~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 223 LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecCC
Confidence 99999999999999999999999865 599999999999998777665599999999999999999876
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=4.8e-32 Score=237.47 Aligned_cols=159 Identities=14% Similarity=0.236 Sum_probs=135.5
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 160 TSAKLFVGGLS-WQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 160 ~~~~l~v~nLp-~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
++++|||+||+ .++|+++|+++|+.||.|.+|+++++ ++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999876 38999999999999999998 9999999999999877
Q ss_pred CCCCCCc----------------------------------cCccccceeecCCCCCCCHHHHHHHHhhcCCe--eEEEE
Q psy6490 238 TPKNRPK----------------------------------IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKV--EETVM 281 (398)
Q Consensus 238 ~~~~~~~----------------------------------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i--~~v~i 281 (398)
....... ...+.++|||+|||+++|+++|+++|++||.| .++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 5322100 01234579999999999999999999999999 89998
Q ss_pred eecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCE----EEEEEec
Q psy6490 282 LMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNK----KVECKKA 325 (398)
Q Consensus 282 ~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~----~i~v~~a 325 (398)
+.+. +.++|||||+|++.++| +|+..|||..|+|+ .+.|+||
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8774 55679999999996665 55557999999987 5777765
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=1.6e-31 Score=246.76 Aligned_cols=161 Identities=18% Similarity=0.336 Sum_probs=140.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCccc
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLR----EYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKI 232 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~----~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l 232 (398)
...+++|||+|||.++|+++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|++|++ +++..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4478999999999999999977 8999999999999886 67799999999999999999996 89999999999
Q ss_pred CCCCCCCCCCC---------------------------------------------------------------------
Q psy6490 233 DPKHATPKNRP--------------------------------------------------------------------- 243 (398)
Q Consensus 233 ~v~~~~~~~~~--------------------------------------------------------------------- 243 (398)
.|.++......
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 99877553310
Q ss_pred ---------------------------------------ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeec
Q psy6490 244 ---------------------------------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMD 284 (398)
Q Consensus 244 ---------------------------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~ 284 (398)
......++|||+||+.++++++|+++|++||.|++|+|+.+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 11224577999999999999999999999999999999866
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC-CEEEEEEecC
Q psy6490 285 QQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK-NKKVECKKAQ 326 (398)
Q Consensus 285 ~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~-g~~i~v~~a~ 326 (398)
+ +|||||+|.+.++|.+++ .|||..|+ |+.|+|.|++
T Consensus 243 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 R-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3 689999999987776665 59999999 9999999986
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2.7e-31 Score=237.52 Aligned_cols=161 Identities=19% Similarity=0.303 Sum_probs=140.6
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 158 DPTSAKLFVGGLSW-QTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 158 ~~~~~~l~v~nLp~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
..++++|||+|||. ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++ +++..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34789999999999 99999999999999999999999885 8899999999999999997 89999999999998
Q ss_pred CCCCCCCC--------------------------------ccCccccceeecCCCCCCCHHHHHHHHhhcC-CeeEEEEe
Q psy6490 236 HATPKNRP--------------------------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFG-KVEETVML 282 (398)
Q Consensus 236 ~~~~~~~~--------------------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~ 282 (398)
++...... ......++|||+|||.++++++|+++|++|| .|.+|+++
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 87644110 0012357899999999999999999999999 99999987
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC-CEEEEEEecCch
Q psy6490 283 MDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK-NKKVECKKAQPK 328 (398)
Q Consensus 283 ~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~-g~~i~v~~a~~k 328 (398)
.+ ++|||||+|++.++|.+++ .|||..|+ |+.|+|.|++++
T Consensus 186 ~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 186 QK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 54 2789999999987776665 59999999 999999999764
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=8.2e-31 Score=242.20 Aligned_cols=173 Identities=12% Similarity=0.296 Sum_probs=151.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
.+++|||+|||.++|+++|+++|+.|| |.++++ ++++|||||+|.+.++|.+|++ +++..+.|+.|.+.+..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 668999999999999999999999999 999988 3468999999999999999997 79999999999998754
Q ss_pred CCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCC
Q psy6490 239 PKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKN 317 (398)
Q Consensus 239 ~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g 317 (398)
..++|||+|||.++|+++|+++|+.||.|.+++++++..+|.++|||||+|.+.++|.+++ .|+|..|+|
T Consensus 94 ---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 94 ---------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp ---------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ---------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3468999999999999999999999999999999999999999999999999988887766 799999999
Q ss_pred EEEEEEecCchHHHhhhhhcCCccccCCCCCC
Q psy6490 318 KKVECKKAQPKEAVQANLLVGKRVILGPLGLR 349 (398)
Q Consensus 318 ~~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~ 349 (398)
+.|+|.|+.++..... ....+.++++++...
T Consensus 165 ~~i~v~~a~~~~~~~~-~~~~~~l~v~nlp~~ 195 (284)
T 3smz_A 165 RTLYVHWTDAGQLTPA-LLHSRCLCVDRLPPG 195 (284)
T ss_dssp EECEEEECCGGGCCTT-TTSCSEEEEECCCTT
T ss_pred cEEEEEECCCCCCCcc-cCCccEEEEecCCcc
Confidence 9999999988764322 234455566555443
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7.5e-31 Score=243.43 Aligned_cols=179 Identities=13% Similarity=0.196 Sum_probs=144.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~ 235 (398)
..+...++|||+|||.++|+++|+++|+.||.|.+|+++++..+ ++|||||+|.+.++|.+|+++++..++|+.|.+.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE
Confidence 34457899999999999999999999999999999999998743 5899999999999999999999999999999998
Q ss_pred CCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCc
Q psy6490 236 HATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFG-KVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFH 313 (398)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~ 313 (398)
+. ..++|||+|||.++++++|+++|+.|| .|.+|+++++.. +.++|||||+|.+.++|.++++ |||.
T Consensus 114 ~~----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 75 367899999999999999999999999 999999998864 8899999999999888877775 9999
Q ss_pred eeCCEEEEEEecCchHHHhhh---hhcCCccccCCCC
Q psy6490 314 MIKNKKVECKKAQPKEAVQAN---LLVGKRVILGPLG 347 (398)
Q Consensus 314 ~i~g~~i~v~~a~~k~~~~~~---~~~~~~~~~~~~~ 347 (398)
.|+|+.|+|.|+.++...... ...++.++++++.
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp 219 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLS 219 (292)
T ss_dssp EETTEECEEEECCCC---------CCTTTEEEEEEEC
T ss_pred EeCCcEEEEEECCCCcccccccccCCCCceEEEECCC
Confidence 999999999999887654432 1333455665543
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=4.5e-31 Score=230.79 Aligned_cols=159 Identities=19% Similarity=0.307 Sum_probs=139.2
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 160 TSAKLFVGGLSW-QTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 160 ~~~~l~v~nLp~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
.+++|||+|||. ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++ +++..++|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999999875 8899999999999999998 8999999999999877
Q ss_pred CCCCCC--------------------------------ccCccccceeecCCCCCCCHHHHHHHHhhcC-CeeEEEEeec
Q psy6490 238 TPKNRP--------------------------------KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFG-KVEETVMLMD 284 (398)
Q Consensus 238 ~~~~~~--------------------------------~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~~~ 284 (398)
...... ......++|||+|||.++++++|+++|++|| .|.+|+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 643210 0112367899999999999999999999999 9999998765
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC-CEEEEEEecCch
Q psy6490 285 QQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK-NKKVECKKAQPK 328 (398)
Q Consensus 285 ~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~-g~~i~v~~a~~k 328 (398)
. +|||||+|.+.++|.+++ .|||..|+ |+.|+|.|++++
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2 789999999988776666 59999999 999999998764
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=2.6e-30 Score=235.75 Aligned_cols=156 Identities=26% Similarity=0.405 Sum_probs=141.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
....++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++ +++..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 347789999999999999999999999999999999654 8999999999999999998 899999999999998
Q ss_pred CCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HH-CCce
Q psy6490 237 ATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EI-HFHM 314 (398)
Q Consensus 237 ~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l-~~~~ 314 (398)
+.. .++|||+|||.++|+++|+++|+.||.|.+|+|++| .+|+++|||||+|.+.++|.+|+ .| ++..
T Consensus 93 a~~---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 93 ATH---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp CCC---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred ccc---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 863 467999999999999999999999999999999999 68999999999999987776665 57 5666
Q ss_pred eC---CEEEEEEecCchH
Q psy6490 315 IK---NKKVECKKAQPKE 329 (398)
Q Consensus 315 i~---g~~i~v~~a~~k~ 329 (398)
+. ++.|.|.++....
T Consensus 163 ~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp ESSSSCCBCEEEECCCEE
T ss_pred EecCCCceEEEeeccccC
Confidence 65 9999999998764
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=4.8e-24 Score=179.17 Aligned_cols=138 Identities=17% Similarity=0.263 Sum_probs=107.5
Q ss_pred EEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCc-ccCC------cccCCCCC---CCCCCCccCccccceeecCCC
Q psy6490 190 DVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIH-TLDG------KKIDPKHA---TPKNRPKIGNRTKKIFVGGVS 258 (398)
Q Consensus 190 ~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~-~~~g------~~l~v~~~---~~~~~~~~~~~~~~l~V~nLp 258 (398)
.++++.+.. +++|||||+|.+.++|++|++ +++. .++| ........ ............++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 456777643 589999999999999999996 3322 1222 11111111 111122233457899999999
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCchH
Q psy6490 259 QDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 259 ~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k~ 329 (398)
+++|+++|+++|+.||.|++|+|++|+.+++++|||||+|.+.++|++++ .|||..|+|+.|+|.|++++.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999999989999999999999988887766 599999999999999998764
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=2.4e-22 Score=167.20 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=106.9
Q ss_pred CCcccEEEEEEcChHhHHHHHh-C-CCcccCCcccCCCCCCCC-------------CCCccCccccceeecCCCCCCCHH
Q psy6490 200 QRSRGFGFITFAEPETVEKVLK-V-PIHTLDGKKIDPKHATPK-------------NRPKIGNRTKKIFVGGVSQDTSAE 264 (398)
Q Consensus 200 ~~~~g~afV~f~~~e~a~~al~-~-~~~~~~g~~l~v~~~~~~-------------~~~~~~~~~~~l~V~nLp~~~tee 264 (398)
...+|+++|+|.+.++|++|++ + ++..++| .|.+.++..+ .........++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 4579999999999999999997 7 8999999 8888877642 223334567899999999999999
Q ss_pred HHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCch
Q psy6490 265 EVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 265 ~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k 328 (398)
+|+++|+.||.|++|+|+++ ++|||||+|.+.++|++++ .|||..|+|+.|+|+|+.++
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999877 5899999999988777766 59999999999999999875
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=2.4e-22 Score=159.25 Aligned_cols=104 Identities=16% Similarity=0.375 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
.+++|||+|||.++|+++|+++|++||.|.+|+|++|+ +.+||||||+|.+.++|++||+ +++..++|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999985 4589999999999999999997 89999999999999887
Q ss_pred CCCCCc-----cCccccceeecCCCCCCCHHH
Q psy6490 239 PKNRPK-----IGNRTKKIFVGGVSQDTSAEE 265 (398)
Q Consensus 239 ~~~~~~-----~~~~~~~l~V~nLp~~~tee~ 265 (398)
.+.... .....++|||+||+.++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 654322 223445799999999999874
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=149.25 Aligned_cols=80 Identities=20% Similarity=0.440 Sum_probs=74.7
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
..++|||+|||.++|+++|+++|++||.|++|+|++|+.+|+++|||||+|.+.++|++|+ .|||..|+|+.|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4568999999999999999999999999999999999999999999999999988776666 699999999999999997
Q ss_pred c
Q psy6490 327 P 327 (398)
Q Consensus 327 ~ 327 (398)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=147.96 Aligned_cols=87 Identities=15% Similarity=0.284 Sum_probs=79.8
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
..++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|++.++|++|+ +|||..|+|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4678999999999999999999999999999999999999999999999999988777666 699999999999999998
Q ss_pred chHHHhhh
Q psy6490 327 PKEAVQAN 334 (398)
Q Consensus 327 ~k~~~~~~ 334 (398)
.+..+++.
T Consensus 85 ~~~~~~~~ 92 (110)
T 3s8s_A 85 KGQQRMKY 92 (110)
T ss_dssp TTHHHHHH
T ss_pred CCcHHHHH
Confidence 87766653
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=5.7e-21 Score=144.56 Aligned_cols=82 Identities=20% Similarity=0.377 Sum_probs=74.9
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-H-CCceeCCEEEEEEec
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFG-KVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-I-HFHMIKNKKVECKKA 325 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l-~~~~i~g~~i~v~~a 325 (398)
+++|||+|||.++||++|+++|++|| .|++|+|++|+.++.+||||||+|.+.++|++|++ + ++..|+|+.|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999988888875 4 567899999999999
Q ss_pred CchHH
Q psy6490 326 QPKEA 330 (398)
Q Consensus 326 ~~k~~ 330 (398)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 88754
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=143.32 Aligned_cols=80 Identities=24% Similarity=0.470 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
..++|||+|||.++|+++|+++|++||.|.+|++++|+.+|+++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 56899999999999999999999999999999999999999999999999999999999997 89999999999999886
Q ss_pred C
Q psy6490 239 P 239 (398)
Q Consensus 239 ~ 239 (398)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=142.89 Aligned_cols=86 Identities=47% Similarity=0.915 Sum_probs=80.1
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
....++|||+|||.++++++|+++|+.||.|++|+|++++.+++++|||||+|++.++|+++++||+..|+|+.|+|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34678999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred CchHHH
Q psy6490 326 QPKEAV 331 (398)
Q Consensus 326 ~~k~~~ 331 (398)
.++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 887543
No 29
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=141.61 Aligned_cols=81 Identities=19% Similarity=0.359 Sum_probs=72.2
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCC--eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCc----eeCCEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGK--VEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFH----MIKNKK 319 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~--i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~----~i~g~~ 319 (398)
..-.+|||+|||+++|+|+|+++|++||. |.+|++++|+.+|++||||||+|.+.++|++++ .|||. .|+||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45678999999999999999999999995 678999999999999999999999977776655 68886 599999
Q ss_pred EEEEecCc
Q psy6490 320 VECKKAQP 327 (398)
Q Consensus 320 i~v~~a~~ 327 (398)
|+|+||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999974
No 30
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.1e-19 Score=135.13 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=75.0
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCch
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k 328 (398)
.+|||+|||.++++++|+++|+.||.|.++.++++..++.++|||||+|.+.++|++++ .|||..|+|+.|+|+|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999999999999999999988887776 49999999999999999876
Q ss_pred H
Q psy6490 329 E 329 (398)
Q Consensus 329 ~ 329 (398)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=136.20 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=73.8
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
...++|||+|||.++++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|++++ .|||..|+|+.|+|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35678999999999999999999999999999999999889999999999999988777766 59999999999999999
Q ss_pred Cch
Q psy6490 326 QPK 328 (398)
Q Consensus 326 ~~k 328 (398)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 32
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=1.2e-19 Score=136.10 Aligned_cols=80 Identities=38% Similarity=0.704 Sum_probs=75.8
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
....++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++++++++..|+|+.|+|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999986
No 33
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.3e-19 Score=143.59 Aligned_cols=87 Identities=21% Similarity=0.382 Sum_probs=79.1
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++++ .||+..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3446689999999999999999999999999999999999989999999999999988777666 799999999999999
Q ss_pred ecCchHHH
Q psy6490 324 KAQPKEAV 331 (398)
Q Consensus 324 ~a~~k~~~ 331 (398)
|++++..+
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99887543
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=8e-20 Score=144.66 Aligned_cols=83 Identities=20% Similarity=0.467 Sum_probs=72.8
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCc
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~ 327 (398)
..+|||+|||+++|+++|+++|++||.|++|+|++|. +.+||||||+|++.++|++|+ +||+..|+|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4679999999999999999999999999999999995 458999999999988887666 6999999999999999988
Q ss_pred hHHHhh
Q psy6490 328 KEAVQA 333 (398)
Q Consensus 328 k~~~~~ 333 (398)
+..+..
T Consensus 83 ~~~~~~ 88 (115)
T 4f25_A 83 RKEREA 88 (115)
T ss_dssp CCC---
T ss_pred cccccc
Confidence 765543
No 35
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-19 Score=146.51 Aligned_cols=84 Identities=21% Similarity=0.391 Sum_probs=79.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
..++|||+|||.++++++|+++|+.||.|++|++++++.+++++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 67999999999999999999999999999999999999999999999999999999999998 89999999999999988
Q ss_pred CCCCC
Q psy6490 239 PKNRP 243 (398)
Q Consensus 239 ~~~~~ 243 (398)
.+...
T Consensus 121 ~~~~~ 125 (139)
T 1u6f_A 121 SGHQR 125 (139)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 36
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=2.7e-20 Score=151.57 Aligned_cols=121 Identities=15% Similarity=0.215 Sum_probs=80.2
Q ss_pred EEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEee
Q psy6490 205 FGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLM 283 (398)
Q Consensus 205 ~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~ 283 (398)
+.|++|.+...+..|+. +++....|+.- ..+.. ........++|||+|||.++|+++|+++|++||.|++|+|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~---~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR---PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp ------------------------------CCSCC---SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC---CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 67888888888888887 55544444431 12222 233445678999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCchH
Q psy6490 284 DQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 284 ~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k~ 329 (398)
++.+++++|||||+|++.++|++++ .||+..|+|+.|+|+|++++.
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9889999999999999988887777 599999999999999998754
No 37
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-19 Score=135.66 Aligned_cols=84 Identities=23% Similarity=0.379 Sum_probs=77.0
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEE
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVEC 322 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v 322 (398)
......++|||+|||.++++++|+++|++||.|++|.+++++.+++++|||||+|.+.++|++++ .||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999988877766 59999999999999
Q ss_pred EecCc
Q psy6490 323 KKAQP 327 (398)
Q Consensus 323 ~~a~~ 327 (398)
+|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 38
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=1.5e-19 Score=140.15 Aligned_cols=85 Identities=14% Similarity=0.356 Sum_probs=78.2
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEe
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~ 324 (398)
.....++|||+|||.++++++|+++|+.|| |.+|+|++++.+++++|||||+|++.++|+++++||+..|+|+.|+|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 345678999999999999999999999997 9999999999999999999999999888877779999999999999999
Q ss_pred cCchHH
Q psy6490 325 AQPKEA 330 (398)
Q Consensus 325 a~~k~~ 330 (398)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987653
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=3.4e-19 Score=141.12 Aligned_cols=90 Identities=23% Similarity=0.445 Sum_probs=80.9
Q ss_pred CccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEE
Q psy6490 243 PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVE 321 (398)
Q Consensus 243 ~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~ 321 (398)
.......++|||+|||.++++++|+++|+.||.|++|+|++++.++.++|||||+|.+.++|++|+ .||+..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344556789999999999999999999999999999999999889999999999999988887776 5999999999999
Q ss_pred EEecCchHHHh
Q psy6490 322 CKKAQPKEAVQ 332 (398)
Q Consensus 322 v~~a~~k~~~~ 332 (398)
|.|++++....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99998876543
No 40
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=1e-19 Score=147.61 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=78.9
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGK---VEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVEC 322 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~---i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v 322 (398)
....++|||+|||+++|+++|+++|+.||. |++|+|++|+. |+++|||||+|++.++|++|+++|+..|+||.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 345678999999999999999999999999 89999999976 99999999999999999888889999999999999
Q ss_pred EecCchHHHh
Q psy6490 323 KKAQPKEAVQ 332 (398)
Q Consensus 323 ~~a~~k~~~~ 332 (398)
.++..++...
T Consensus 120 ~~a~~~e~~~ 129 (136)
T 2hgl_A 120 FKSHRTEMDW 129 (136)
T ss_dssp EECCHHHHHH
T ss_pred EECChHHHHH
Confidence 9998877554
No 41
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=138.76 Aligned_cols=86 Identities=24% Similarity=0.406 Sum_probs=78.9
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++++++|+++|+.||.|++|+|++++.+++++|||||+|.+.++|++++ .||+..|+|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999999889999999999999988887766 7999999999999999
Q ss_pred cCchHHH
Q psy6490 325 AQPKEAV 331 (398)
Q Consensus 325 a~~k~~~ 331 (398)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 42
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=6e-20 Score=147.56 Aligned_cols=82 Identities=17% Similarity=0.450 Sum_probs=76.7
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecC
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~ 326 (398)
...++|||+|||.++|+++|+++|+.||.|++|+|++++.++.++|||||+|.+.++|+++++|||..|+|+.|+|.|++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 35678999999999999999999999999999999999989999999999999988888777999999999999999997
Q ss_pred ch
Q psy6490 327 PK 328 (398)
Q Consensus 327 ~k 328 (398)
+.
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 43
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=143.49 Aligned_cols=86 Identities=15% Similarity=0.329 Sum_probs=79.1
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecC
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~ 326 (398)
...++|||+|||.++++++|+++|+.||.|++|+|++|+.++.++|||||+|.+.++|+++++||+..|+|+.|+|.|+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 45678999999999999999999999999999999999999999999999999988777666999999999999999998
Q ss_pred chHHHh
Q psy6490 327 PKEAVQ 332 (398)
Q Consensus 327 ~k~~~~ 332 (398)
++..+.
T Consensus 103 ~~~~~~ 108 (114)
T 2cq4_A 103 AEKNRL 108 (114)
T ss_dssp HHHHHH
T ss_pred CCccCC
Confidence 876654
No 44
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=140.16 Aligned_cols=86 Identities=20% Similarity=0.354 Sum_probs=78.8
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++|.|++++.++.++|||||+|.+.++|++|+ .||+..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999988887766 599999999999999
Q ss_pred ecCchHH
Q psy6490 324 KAQPKEA 330 (398)
Q Consensus 324 ~a~~k~~ 330 (398)
|+.++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987753
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=2.5e-19 Score=133.81 Aligned_cols=80 Identities=24% Similarity=0.500 Sum_probs=74.7
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
...++|||+|||.++++++|+++|++||.|.+|.++++..+++++|||||+|.+.++|++++ .|||..|+|+.|+|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45788999999999999999999999999999999999899999999999999988887766 79999999999999998
Q ss_pred C
Q psy6490 326 Q 326 (398)
Q Consensus 326 ~ 326 (398)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 46
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=140.69 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=77.9
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecC
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~ 326 (398)
...++|||+|||+++|+++|+++|+.||.|.+|+|++|.. +.++|||||+|++.++|++|+++++..|+|+.|+|.|+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4568999999999999999999999999999999999976 999999999999999999988899999999999999987
Q ss_pred chHHHh
Q psy6490 327 PKEAVQ 332 (398)
Q Consensus 327 ~k~~~~ 332 (398)
.....+
T Consensus 88 ~~~~~k 93 (103)
T 1s79_A 88 DYFAKK 93 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 754443
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=3.1e-19 Score=136.52 Aligned_cols=85 Identities=19% Similarity=0.411 Sum_probs=78.0
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCc
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~ 327 (398)
+++|||+|||.++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++++ .|||..|+|+.|+|+|+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 578999999999999999999999999999999999999999999999999988777666 6999999999999999998
Q ss_pred hHHHhh
Q psy6490 328 KEAVQA 333 (398)
Q Consensus 328 k~~~~~ 333 (398)
+.....
T Consensus 82 ~~~~~~ 87 (96)
T 2x1f_A 82 SDISGV 87 (96)
T ss_dssp SSGGGH
T ss_pred CCCCCc
Confidence 765543
No 48
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=1.4e-19 Score=141.77 Aligned_cols=86 Identities=41% Similarity=0.710 Sum_probs=76.7
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEe
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~ 324 (398)
.....++|||+|||.++++++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|+++++..+..|+|+.|+|++
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999988888778999999999999
Q ss_pred cCchHH
Q psy6490 325 AQPKEA 330 (398)
Q Consensus 325 a~~k~~ 330 (398)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987754
No 49
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=140.60 Aligned_cols=85 Identities=14% Similarity=0.311 Sum_probs=77.7
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|++++ .|||..|+|+.|+|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3446788999999999999999999999999999999999999999999999999988877766 599999999999999
Q ss_pred ecCchH
Q psy6490 324 KAQPKE 329 (398)
Q Consensus 324 ~a~~k~ 329 (398)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998753
No 50
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.5e-19 Score=135.05 Aligned_cols=81 Identities=22% Similarity=0.481 Sum_probs=75.8
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCc
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~ 327 (398)
..++|||+|||.++++++|+++|+.||.|.++++.++..+++++|||||+|.+.++|++++++|+..|+|+.|+|.++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 45789999999999999999999999999999999998899999999999999888877779999999999999999976
Q ss_pred h
Q psy6490 328 K 328 (398)
Q Consensus 328 k 328 (398)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 51
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=137.03 Aligned_cols=84 Identities=19% Similarity=0.493 Sum_probs=77.2
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
...++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|++.++|++++ .||+..|+|+.|+|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35688999999999999999999999999999999999999999999999999988887766 59999999999999999
Q ss_pred CchHH
Q psy6490 326 QPKEA 330 (398)
Q Consensus 326 ~~k~~ 330 (398)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87643
No 52
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=139.18 Aligned_cols=85 Identities=21% Similarity=0.409 Sum_probs=78.2
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEEe
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEET-VMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECKK 324 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v-~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~~ 324 (398)
...++|||+|||.++++++|+++|++||.|.+| +|++|+.++.++|||||+|++.++|+++++ ||+..|+|+.|+|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356889999999999999999999999999999 999998899999999999999888877776 999999999999999
Q ss_pred cCchHHH
Q psy6490 325 AQPKEAV 331 (398)
Q Consensus 325 a~~k~~~ 331 (398)
+.++..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9877543
No 53
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=136.82 Aligned_cols=84 Identities=17% Similarity=0.366 Sum_probs=76.8
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++++ .||+..|+|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567889999999999999999999999999999999997 8999999999999988887766 799999999999999
Q ss_pred ecCchH
Q psy6490 324 KAQPKE 329 (398)
Q Consensus 324 ~a~~k~ 329 (398)
|++++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998764
No 54
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=140.15 Aligned_cols=87 Identities=31% Similarity=0.635 Sum_probs=79.9
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEe
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~ 324 (398)
.....++|||+|||.++++++|+++|+.||.|++|+|++++.++.++|||||+|++.++|+++++.++..|+|+.|+|++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999888888776699999999999999
Q ss_pred cCchHHH
Q psy6490 325 AQPKEAV 331 (398)
Q Consensus 325 a~~k~~~ 331 (398)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9887643
No 55
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=137.32 Aligned_cols=87 Identities=30% Similarity=0.519 Sum_probs=79.3
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEE
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECK 323 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~ 323 (398)
......++|||+|||.++++++|+++|+.||.|++|+|++++.+++++|||||+|++.++|+++++ ++..|+|+.|+|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEE
Confidence 344567889999999999999999999999999999999999999999999999999999988887 6889999999999
Q ss_pred ecCchHHH
Q psy6490 324 KAQPKEAV 331 (398)
Q Consensus 324 ~a~~k~~~ 331 (398)
|+.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99887543
No 56
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=7.1e-20 Score=133.36 Aligned_cols=75 Identities=64% Similarity=1.185 Sum_probs=72.3
Q ss_pred ceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
+|||+|||.++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|++++++|+..|+|+.|+|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999988999999999999999999999999999999999999986
No 57
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=139.60 Aligned_cols=87 Identities=20% Similarity=0.493 Sum_probs=79.1
Q ss_pred CccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEE
Q psy6490 243 PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVE 321 (398)
Q Consensus 243 ~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~ 321 (398)
.......++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++++ .|||..|+|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344556789999999999999999999999999999999999999999999999999988887766 5999999999999
Q ss_pred EEecCchH
Q psy6490 322 CKKAQPKE 329 (398)
Q Consensus 322 v~~a~~k~ 329 (398)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 58
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=6.6e-20 Score=138.52 Aligned_cols=82 Identities=12% Similarity=0.242 Sum_probs=70.1
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFG--KVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G--~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
.+|||+|||+++|+++|+++|++|| .|.+|++++|+.+|+++|||||+|.+.++|++|+ .|||..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999999999999999999988887776 699999999999999998
Q ss_pred chHHH
Q psy6490 327 PKEAV 331 (398)
Q Consensus 327 ~k~~~ 331 (398)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 59
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=140.81 Aligned_cols=88 Identities=10% Similarity=0.158 Sum_probs=81.2
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKV-EETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i-~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||+++|+++|+++|+.||.| .+|+|++|+ +++++|||||+|++.++|++|+++|+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4456889999999999999999999999999 899999997 99999999999999999999888899999999999999
Q ss_pred cCchHHHhhh
Q psy6490 325 AQPKEAVQAN 334 (398)
Q Consensus 325 a~~k~~~~~~ 334 (398)
+.+++.+...
T Consensus 91 a~~~~~~~~~ 100 (114)
T 2cpy_A 91 VTLEDMREIE 100 (114)
T ss_dssp ECHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9998876654
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=139.64 Aligned_cols=86 Identities=17% Similarity=0.378 Sum_probs=78.5
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQT-KRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~-~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||+++++++|+++|+.|| |.+|.|++++.+ ++++|||||+|.+.++|+++++||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVD 89 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEE
Confidence 345678999999999999999999999999 999999999887 999999999999988887777999999999999999
Q ss_pred ecCchHHH
Q psy6490 324 KAQPKEAV 331 (398)
Q Consensus 324 ~a~~k~~~ 331 (398)
++.++..+
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887543
No 61
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=140.16 Aligned_cols=88 Identities=16% Similarity=0.307 Sum_probs=79.4
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHC------CceeC
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIH------FHMIK 316 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~------~~~i~ 316 (398)
......++|||+|||+++++++|+++|+.||.|.+|+|++|+.++.++|||||+|.+.++|++++ .|| +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34456789999999999999999999999999999999999999999999999999988777766 588 99999
Q ss_pred CEEEEEEecCchHHH
Q psy6490 317 NKKVECKKAQPKEAV 331 (398)
Q Consensus 317 g~~i~v~~a~~k~~~ 331 (398)
|+.|+|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999887544
No 62
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1e-19 Score=140.27 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=77.9
Q ss_pred cccceeecCCCC------CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCC-EE
Q psy6490 248 RTKKIFVGGVSQ------DTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKN-KK 319 (398)
Q Consensus 248 ~~~~l~V~nLp~------~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g-~~ 319 (398)
..++|||+|||. ++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++|+ .|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467899999999 9999999999999999999999999999999999999999988777666 699999999 99
Q ss_pred EEEEecCchHHHh
Q psy6490 320 VECKKAQPKEAVQ 332 (398)
Q Consensus 320 i~v~~a~~k~~~~ 332 (398)
|+|.++.+++...
T Consensus 85 l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 85 LFLYTMKDVERYN 97 (100)
T ss_dssp CEEEESHHHHHHH
T ss_pred EEEEECchhhhhh
Confidence 9999998876543
No 63
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=5.1e-19 Score=140.78 Aligned_cols=83 Identities=20% Similarity=0.390 Sum_probs=75.2
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEE
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVEC 322 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v 322 (398)
......++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++++ .|||..|+|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999987776666 59999999999999
Q ss_pred EecC
Q psy6490 323 KKAQ 326 (398)
Q Consensus 323 ~~a~ 326 (398)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9974
No 64
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-20 Score=139.64 Aligned_cols=83 Identities=19% Similarity=0.367 Sum_probs=76.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-C-CCcccCCcccCCCCC
Q psy6490 161 SAKLFVGGLSWQTSSEKLREYFGMFG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-V-PIHTLDGKKIDPKHA 237 (398)
Q Consensus 161 ~~~l~v~nLp~~~t~~~L~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~-~~~~~~g~~l~v~~~ 237 (398)
+++|||+|||.++|+++|+++|++|| .|.+|++++|+.+|.++|||||+|.+.++|++|++ + ++..++|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999999999999999999999999999999998 4 456799999999999
Q ss_pred CCCCCC
Q psy6490 238 TPKNRP 243 (398)
Q Consensus 238 ~~~~~~ 243 (398)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876553
No 65
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=142.55 Aligned_cols=87 Identities=37% Similarity=0.643 Sum_probs=80.2
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEe
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~ 324 (398)
.....++|||+|||.++++++|+++|+.||.|++|+|++++.++.++|||||+|.+.++|+++++.++..|+|+.|+|.|
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999988887799999999999999
Q ss_pred cCchHHH
Q psy6490 325 AQPKEAV 331 (398)
Q Consensus 325 a~~k~~~ 331 (398)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887643
No 66
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=3.5e-19 Score=139.89 Aligned_cols=85 Identities=14% Similarity=0.287 Sum_probs=77.8
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|++++ .|||..|+|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999988777766 599999999999999
Q ss_pred ecCchH
Q psy6490 324 KAQPKE 329 (398)
Q Consensus 324 ~a~~k~ 329 (398)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998764
No 67
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=133.77 Aligned_cols=81 Identities=16% Similarity=0.395 Sum_probs=75.2
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++++++|+++|++||.|.+|++++++.++.++|||||+|++.++|++++ .||+..|+|+.|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 446789999999999999999999999999999999999999999999999999988887766 6999999999999999
Q ss_pred cC
Q psy6490 325 AQ 326 (398)
Q Consensus 325 a~ 326 (398)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 68
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=139.70 Aligned_cols=86 Identities=29% Similarity=0.442 Sum_probs=78.6
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++|.|++++.++.++|||||+|.+.++|+++++ ||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999888877765 89999999999999
Q ss_pred ecCchHH
Q psy6490 324 KAQPKEA 330 (398)
Q Consensus 324 ~a~~k~~ 330 (398)
|+.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9987653
No 69
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=138.88 Aligned_cols=86 Identities=23% Similarity=0.483 Sum_probs=78.7
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++++++|+++|+.||.|++|+|++++.+++++|||||+|.+.++|++|+ .||+..|+|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 446789999999999999999999999999999999999999999999999999988887766 6999999999999999
Q ss_pred cCchHHH
Q psy6490 325 AQPKEAV 331 (398)
Q Consensus 325 a~~k~~~ 331 (398)
++++..+
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9877543
No 70
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=4.1e-19 Score=149.96 Aligned_cols=88 Identities=14% Similarity=0.287 Sum_probs=76.8
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||..+++++|+++|+.||.|..|.|++++.+|.++|||||+|.+.++|++|+ .|||..|+|+.|+|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999999999999999999999988777666 5999999999999999
Q ss_pred cCchHHHhh
Q psy6490 325 AQPKEAVQA 333 (398)
Q Consensus 325 a~~k~~~~~ 333 (398)
+.++..+..
T Consensus 149 a~~~~~~~~ 157 (165)
T 1rk8_A 149 CFVKGPKRV 157 (165)
T ss_dssp SEECC----
T ss_pred ecCCCCCCC
Confidence 988765543
No 71
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=140.07 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
.+.++|||+||+.++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++|++ +|+..++|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 367899999999999999999999999999999999999999999999999999999999998 8999999999999887
Q ss_pred CCC
Q psy6490 238 TPK 240 (398)
Q Consensus 238 ~~~ 240 (398)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 72
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=137.87 Aligned_cols=84 Identities=19% Similarity=0.399 Sum_probs=75.8
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQ---TKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVEC 322 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~---~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v 322 (398)
...++|||+|||.++++++|+++|++||.|++|.|+++.. ++.++|||||+|.+.++|+++++ ||+..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568899999999999999999999999999999999876 66899999999999888877665 8999999999999
Q ss_pred EecCchHH
Q psy6490 323 KKAQPKEA 330 (398)
Q Consensus 323 ~~a~~k~~ 330 (398)
+|+.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987653
No 73
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=139.74 Aligned_cols=85 Identities=18% Similarity=0.312 Sum_probs=77.5
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|+.||.|.+|.|++++.++.++|||||+|.+.++|++|+ .||+..|+|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999987777666 599999999999999
Q ss_pred ecCchH
Q psy6490 324 KAQPKE 329 (398)
Q Consensus 324 ~a~~k~ 329 (398)
|++.+.
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998654
No 74
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.2e-19 Score=134.99 Aligned_cols=86 Identities=41% Similarity=0.794 Sum_probs=80.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
....++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|+++++..++|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy6490 238 TPKNRP 243 (398)
Q Consensus 238 ~~~~~~ 243 (398)
..+...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876553
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=139.22 Aligned_cols=88 Identities=18% Similarity=0.423 Sum_probs=80.8
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
...++|||+|||.++++++|+++|+.||.|.+|.+++++.++.++|||||+|.+.++|++++ .|||..|+|+.|+|+|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999999999999989999999999999988887777 59999999999999999
Q ss_pred CchHHHhhh
Q psy6490 326 QPKEAVQAN 334 (398)
Q Consensus 326 ~~k~~~~~~ 334 (398)
.++..+...
T Consensus 86 ~~~~~~~~~ 94 (104)
T 1p1t_A 86 ASEKNKEEL 94 (104)
T ss_dssp TCTTHHHHH
T ss_pred CCccchhhh
Confidence 988776654
No 76
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=138.17 Aligned_cols=87 Identities=25% Similarity=0.441 Sum_probs=77.9
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEE
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVEC 322 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v 322 (398)
......++|||+|||.++|+++|+++|++||.|.+|.|+++ ++.++|||||+|.+.++|++|+ .||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456789999999999999999999999999999999998 8999999999999988777766 59999999999999
Q ss_pred EecCchHHHh
Q psy6490 323 KKAQPKEAVQ 332 (398)
Q Consensus 323 ~~a~~k~~~~ 332 (398)
.|+.++..+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2d9p_A 88 ALAQRKEERQ 97 (103)
T ss_dssp EECSSCCCCC
T ss_pred EEecccccCC
Confidence 9998876543
No 77
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=4.9e-19 Score=140.69 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=79.2
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGK---VEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVEC 322 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~---i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v 322 (398)
....++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|++.++|++|+++|+..|+||.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 345678999999999999999999999999 89999999976 99999999999999999888889999999999999
Q ss_pred EecCchHHHhh
Q psy6490 323 KKAQPKEAVQA 333 (398)
Q Consensus 323 ~~a~~k~~~~~ 333 (398)
.++..++....
T Consensus 93 ~~a~~~~~~~~ 103 (118)
T 2db1_A 93 FKSHRTEMDWV 103 (118)
T ss_dssp EEECHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 99988775543
No 78
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-19 Score=138.92 Aligned_cols=85 Identities=32% Similarity=0.612 Sum_probs=78.2
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++++++|+++|+.||.|++|+|++++.++.++|||||+|.+.++|++++ .||+..|+|+.|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999999999999999999999988877766 7999999999999999
Q ss_pred cCchHH
Q psy6490 325 AQPKEA 330 (398)
Q Consensus 325 a~~k~~ 330 (398)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 79
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=137.67 Aligned_cols=92 Identities=34% Similarity=0.625 Sum_probs=81.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 155 TGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 155 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
...+...++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++ +++ .|+|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3445578999999999999999999999999999999999999999999999999999999999999 555 89999999
Q ss_pred CCCCCCCCCCccCc
Q psy6490 234 PKHATPKNRPKIGN 247 (398)
Q Consensus 234 v~~~~~~~~~~~~~ 247 (398)
|.++..........
T Consensus 90 V~~a~~~~~~~~~~ 103 (116)
T 2cqd_A 90 VNLAYLGAKPRSLQ 103 (116)
T ss_dssp EEESTTTCCCCCCC
T ss_pred EEEcccCCCccccC
Confidence 99997765544433
No 80
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=4.7e-19 Score=142.99 Aligned_cols=85 Identities=24% Similarity=0.377 Sum_probs=77.8
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++|+|++|+.+++++|||||+|++.++|++|+ +|||..|+|+.|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999988777766 599999999999999
Q ss_pred ecCchH
Q psy6490 324 KAQPKE 329 (398)
Q Consensus 324 ~a~~k~ 329 (398)
|+.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998763
No 81
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=8.6e-19 Score=134.85 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=75.3
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCcee
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEE--------TVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMI 315 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~--------v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i 315 (398)
.....++|||+|||.++++++|+++|++||.|.+ |++++|+.+++++|||||+|.+.++|++++ .|||..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3446789999999999999999999999999999 999999999999999999999988887766 5999999
Q ss_pred CCEEEEEEecC
Q psy6490 316 KNKKVECKKAQ 326 (398)
Q Consensus 316 ~g~~i~v~~a~ 326 (398)
+|+.|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 82
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=144.44 Aligned_cols=87 Identities=18% Similarity=0.394 Sum_probs=79.2
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|++|+ +||+..|+|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999988887766 599999999999999
Q ss_pred ecCchHHH
Q psy6490 324 KAQPKEAV 331 (398)
Q Consensus 324 ~a~~k~~~ 331 (398)
|++++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887544
No 83
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=145.63 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=77.2
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFG--KVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G--~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
..++|||+||++++|+++|+++|+.|| .|.+|+|++|+.+|+++|||||+|.+.++|++|+ .|||..|+|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 9999999999999999999999999988877766 5799999999999999
Q ss_pred cCchHHHhh
Q psy6490 325 AQPKEAVQA 333 (398)
Q Consensus 325 a~~k~~~~~ 333 (398)
+.++.....
T Consensus 134 a~~~~~~~~ 142 (156)
T 3n9u_C 134 ATRQNLSQF 142 (156)
T ss_dssp CCHHHHHHH
T ss_pred cCCCcchhh
Confidence 988765443
No 84
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=133.24 Aligned_cols=82 Identities=18% Similarity=0.346 Sum_probs=74.4
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++|+|.+++. ++++|||||+|++.++|+++++ ||+..|+|+.|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345678999999999999999999999999999999999975 9999999999999887777765 99999999999999
Q ss_pred ecCc
Q psy6490 324 KAQP 327 (398)
Q Consensus 324 ~a~~ 327 (398)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 85
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=6.1e-19 Score=137.25 Aligned_cols=86 Identities=24% Similarity=0.403 Sum_probs=77.5
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCC---EEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKN---KKV 320 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g---~~i 320 (398)
.....++|||+|||.++++++|+++|+.||.|++|+|++++ ++.++|||||+|.+.++|++|+ .||+..|.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999997 7999999999999988777766 599999998 999
Q ss_pred EEEecCchHHH
Q psy6490 321 ECKKAQPKEAV 331 (398)
Q Consensus 321 ~v~~a~~k~~~ 331 (398)
+|.|+.++..+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999887654
No 86
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.8e-19 Score=137.86 Aligned_cols=88 Identities=24% Similarity=0.411 Sum_probs=78.9
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHH-HH-CCceeCCEEE
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMD-QQTKRHRGFGFVTFENEEVVDHIC-EI-HFHMIKNKKV 320 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~-~~~~~~kg~afV~F~~~eaa~a~~-~l-~~~~i~g~~i 320 (398)
......++|||+|||.++++++|+++|+.||.|++|+|+++ +.++.++|||||+|.+.++|++|+ .| |+..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456789999999999999999999999999999999999 789999999999999988777666 68 9999999999
Q ss_pred EEEecCchHHH
Q psy6490 321 ECKKAQPKEAV 331 (398)
Q Consensus 321 ~v~~a~~k~~~ 331 (398)
+|.|+.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887543
No 87
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=135.19 Aligned_cols=87 Identities=30% Similarity=0.502 Sum_probs=81.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
.+....++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 444578999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCCCCCC
Q psy6490 235 KHATPKNR 242 (398)
Q Consensus 235 ~~~~~~~~ 242 (398)
.++..+..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99887654
No 88
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=5.5e-19 Score=132.52 Aligned_cols=81 Identities=54% Similarity=0.938 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKH 236 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~ 236 (398)
.+...++|||+|||.++++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|+++++..++|+.|.|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999888899999998875
Q ss_pred C
Q psy6490 237 A 237 (398)
Q Consensus 237 ~ 237 (398)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 89
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=134.54 Aligned_cols=85 Identities=19% Similarity=0.306 Sum_probs=75.3
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++|+|+++..+ ++|||||+|.+.++|++|+ .||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456789999999999999999999999999999999998543 6899999999988887766 599999999999999
Q ss_pred ecCchHHH
Q psy6490 324 KAQPKEAV 331 (398)
Q Consensus 324 ~a~~k~~~ 331 (398)
|++++..+
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99886544
No 90
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-19 Score=144.70 Aligned_cols=86 Identities=15% Similarity=0.310 Sum_probs=76.4
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCc----eeCC
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEE--TVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFH----MIKN 317 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~--v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~----~i~g 317 (398)
......++|||+|||+++|+++|+++|++||.|.. |+|++|+.+|++||||||+|++.++.+++..|||. .|+|
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHHHHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhcCCCCCccCCC
Confidence 33456789999999999999999999999999976 99999999999999999999999444555689999 9999
Q ss_pred EEEEEEecCchH
Q psy6490 318 KKVECKKAQPKE 329 (398)
Q Consensus 318 ~~i~v~~a~~k~ 329 (398)
|.|+|+|++++.
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998764
No 91
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=1.6e-18 Score=137.29 Aligned_cols=88 Identities=30% Similarity=0.513 Sum_probs=81.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
.+..+.++|||+|||.++++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|++|++ +++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445578999999999999999999999999999999999999899999999999999999999998 8999999999999
Q ss_pred CCCCCCCCC
Q psy6490 235 KHATPKNRP 243 (398)
Q Consensus 235 ~~~~~~~~~ 243 (398)
.++..+...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 998876553
No 92
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=136.10 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=76.5
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecC
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~ 326 (398)
....+|||+|||+++|++||+++|+.| .|.+|+|++|+. |+++|||||+|++.++|++|+++|+..|+||.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 345789999999999999999999999 899999999965 999999999999999998888999999999999999998
Q ss_pred chHHHh
Q psy6490 327 PKEAVQ 332 (398)
Q Consensus 327 ~k~~~~ 332 (398)
.++...
T Consensus 92 ~~~~~~ 97 (109)
T 2dnn_A 92 ERQWVA 97 (109)
T ss_dssp HHHHHH
T ss_pred ccchhh
Confidence 776543
No 93
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.4e-19 Score=135.68 Aligned_cols=89 Identities=27% Similarity=0.430 Sum_probs=82.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 155 TGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 155 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
..+..+.++|||+|||.++++++|+++|++||.|.+|++++++.++.++|||||+|.+.++|++|++ +++..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3445578999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCCCCCCCC
Q psy6490 234 PKHATPKNRP 243 (398)
Q Consensus 234 v~~~~~~~~~ 243 (398)
|.++..+...
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9998876543
No 94
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.1e-19 Score=138.47 Aligned_cols=87 Identities=17% Similarity=0.323 Sum_probs=78.6
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCcee
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVE--------ETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMI 315 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~--------~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i 315 (398)
.....++|||+|||.++|+++|+++|+.||.|. .|+|++++.+++++|||||+|.+.++|++|+ .||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 6999999899999999999999988887776 5999999
Q ss_pred CCEEEEEEecCchHHH
Q psy6490 316 KNKKVECKKAQPKEAV 331 (398)
Q Consensus 316 ~g~~i~v~~a~~k~~~ 331 (398)
+|+.|+|.|++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999887543
No 95
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=6.7e-20 Score=149.12 Aligned_cols=125 Identities=10% Similarity=0.072 Sum_probs=75.0
Q ss_pred cEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCCCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEee
Q psy6490 204 GFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLM 283 (398)
Q Consensus 204 g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~ 283 (398)
|+||.+|..++.+..++........|....-... ...........++|||+|||+++|++||+++|+.|| |++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g-~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSG-DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCC-CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 5788888888777666542222233332211111 111123344567899999999999999999999999 77999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCchHHH
Q psy6490 284 DQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPKEAV 331 (398)
Q Consensus 284 ~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~k~~~ 331 (398)
|+. ++++|||||+|++.++|++|+++|+..|+||.|+|.++..++..
T Consensus 80 d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 80 GPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp SSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC-
T ss_pred CCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCCC
Confidence 975 99999999999999888888899999999999999999877643
No 96
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=134.39 Aligned_cols=83 Identities=12% Similarity=0.217 Sum_probs=76.5
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEE----
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVE-ETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKK---- 319 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~-~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~---- 319 (398)
....++|||+|||.++++++|+++|++||.|. +|+|++|+.+++++|||||+|.+.++|+++++ |||..|+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999999999 99999999999999999999999888877775 9999999999
Q ss_pred EEEEecCch
Q psy6490 320 VECKKAQPK 328 (398)
Q Consensus 320 i~v~~a~~k 328 (398)
|+|.|+++.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998754
No 97
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=134.71 Aligned_cols=88 Identities=50% Similarity=0.899 Sum_probs=81.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~ 235 (398)
......++|||+|||.++++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|++||+.++..|+|+.|.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPK 90 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred CCCCCCCC
Q psy6490 236 HATPKNRP 243 (398)
Q Consensus 236 ~~~~~~~~ 243 (398)
++..+...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99876543
No 98
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6e-19 Score=135.42 Aligned_cols=80 Identities=20% Similarity=0.320 Sum_probs=70.1
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HC--CceeCCEEEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IH--FHMIKNKKVEC 322 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~--~~~i~g~~i~v 322 (398)
....++|||+|||+++||++|+++|++||.|++|+|+++ ||||||+|++.++|+++++ ++ +..|+||.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346788999999999999999999999999999999876 7999999999888877665 65 57899999999
Q ss_pred EecCchHHH
Q psy6490 323 KKAQPKEAV 331 (398)
Q Consensus 323 ~~a~~k~~~ 331 (398)
.|++.+...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999876543
No 99
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=6e-19 Score=132.60 Aligned_cols=81 Identities=16% Similarity=0.428 Sum_probs=73.9
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEEec
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKR-HRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECKKA 325 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~-~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~~a 325 (398)
..++|||+|||.++|+++|+++|++||.|.+|.++++..++. ++|||||+|.+.++|+++++ |||..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999999987766 89999999999888877665 9999999999999999
Q ss_pred Cch
Q psy6490 326 QPK 328 (398)
Q Consensus 326 ~~k 328 (398)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 100
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=5.6e-19 Score=137.73 Aligned_cols=86 Identities=24% Similarity=0.454 Sum_probs=77.9
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCcee---CCEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMI---KNKKV 320 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i---~g~~i 320 (398)
.....++|||+|||.++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++++ .||+..+ +|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999999999999999999999999999999988777766 5999998 89999
Q ss_pred EEEecCchHH
Q psy6490 321 ECKKAQPKEA 330 (398)
Q Consensus 321 ~v~~a~~k~~ 330 (398)
+|+|+.++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987653
No 101
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=9.1e-19 Score=138.69 Aligned_cols=84 Identities=26% Similarity=0.568 Sum_probs=76.6
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
...++|||+|||.++++++|+++|++||.|++|.|+.+. ++.++|||||+|++.++|++|+ .|||..|+|+.|+|+|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456889999999999999999999999999999999997 8999999999999988887766 59999999999999999
Q ss_pred CchHHH
Q psy6490 326 QPKEAV 331 (398)
Q Consensus 326 ~~k~~~ 331 (398)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 102
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=139.08 Aligned_cols=83 Identities=17% Similarity=0.408 Sum_probs=74.1
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQ-QTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~-~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++++++|+++|+.|| |.+|+|++++ .+|+++|||||+|.+.++|+++++|||..|+|+.|+|++
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 45678999999999999999999999999 9999999998 689999999999999888877779999999999999999
Q ss_pred cCchH
Q psy6490 325 AQPKE 329 (398)
Q Consensus 325 a~~k~ 329 (398)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98753
No 103
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=2.9e-19 Score=141.51 Aligned_cols=102 Identities=11% Similarity=0.304 Sum_probs=91.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
.+++|||+|||.++++++|+++|+.||.|.+|+++++ +.++|||||+|.+.++|.+|++ +++..++|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 6789999999999999999999999999999999875 4469999999999999999999 89999999999999987
Q ss_pred CCCCCccCccccceeecCCCCCCCHHHHHHHHhhcCC
Q psy6490 239 PKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGK 275 (398)
Q Consensus 239 ~~~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~ 275 (398)
..... ++++...++++|+++|++||.
T Consensus 84 ~~~~~-----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF-----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT-----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh-----------hhhhHhHhHHHHHHHHHHhCC
Confidence 54331 577888899999999999985
No 104
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.2e-18 Score=133.62 Aligned_cols=87 Identities=17% Similarity=0.330 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~ 235 (398)
......++|||+|||.++++++|+++|+.|| |.+|++++++.+++++|||||+|.+.++|++|+++++..|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 3344789999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy6490 236 HATPKNRP 243 (398)
Q Consensus 236 ~~~~~~~~ 243 (398)
++..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 98876543
No 105
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=136.93 Aligned_cols=86 Identities=31% Similarity=0.607 Sum_probs=77.2
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEE
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVEC 322 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v 322 (398)
......++|||+|||.++|+++|+++|++||.|++|+|++++.+++++|||||+|.+.++|+++++ +++ .|+|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 344567899999999999999999999999999999999999999999999999999888877775 676 899999999
Q ss_pred EecCchHH
Q psy6490 323 KKAQPKEA 330 (398)
Q Consensus 323 ~~a~~k~~ 330 (398)
+|+..+..
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99976543
No 106
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=130.39 Aligned_cols=82 Identities=16% Similarity=0.305 Sum_probs=75.5
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
....++|||+|||+++++++|+++|+.| .|.+|+|+++ .+|+++|||||+|++.++|+++++||+..|+|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 3456889999999999999999999999 9999999999 7899999999999998888877779999999999999999
Q ss_pred CchH
Q psy6490 326 QPKE 329 (398)
Q Consensus 326 ~~k~ 329 (398)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8763
No 107
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=1.5e-18 Score=137.44 Aligned_cols=88 Identities=23% Similarity=0.408 Sum_probs=81.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
......++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334477999999999999999999999999999999999999999999999999999999999996 8999999999999
Q ss_pred CCCCCCCCC
Q psy6490 235 KHATPKNRP 243 (398)
Q Consensus 235 ~~~~~~~~~ 243 (398)
.++..+...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999876553
No 108
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=2.5e-18 Score=134.24 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=74.5
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++|.|+++. +++++|||||+|.+.++|++|+ .||+..|+|+.|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999997 9999999999999988777766 599999999999999
Q ss_pred ecC
Q psy6490 324 KAQ 326 (398)
Q Consensus 324 ~a~ 326 (398)
|+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 109
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=133.25 Aligned_cols=86 Identities=24% Similarity=0.516 Sum_probs=75.8
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEE
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVEC 322 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v 322 (398)
......++|||+|||.++++++|+++|++||.|++|+|+++.. .++|||||+|.+.++|++|+ .||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999998854 38999999999988777766 59999999999999
Q ss_pred EecCchHHH
Q psy6490 323 KKAQPKEAV 331 (398)
Q Consensus 323 ~~a~~k~~~ 331 (398)
.|+.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999887543
No 110
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=132.66 Aligned_cols=84 Identities=31% Similarity=0.484 Sum_probs=78.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
......++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++ +++..++|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 444578999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred CCCCC
Q psy6490 235 KHATP 239 (398)
Q Consensus 235 ~~~~~ 239 (398)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 88764
No 111
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=135.24 Aligned_cols=88 Identities=26% Similarity=0.449 Sum_probs=81.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CC------CcccC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VP------IHTLD 228 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~------~~~~~ 228 (398)
......++|||+|||.++++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|++|++ ++ +..++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344578999999999999999999999999999999999999999999999999999999999998 77 89999
Q ss_pred CcccCCCCCCCCCCC
Q psy6490 229 GKKIDPKHATPKNRP 243 (398)
Q Consensus 229 g~~l~v~~~~~~~~~ 243 (398)
|+.|.|.++..+...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876553
No 112
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.77 E-value=3e-19 Score=129.98 Aligned_cols=75 Identities=47% Similarity=0.780 Sum_probs=72.0
Q ss_pred ceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
+|||+|||.++++++|+++|++||.|.+|.+.+++.++.++|||||+|.+.++|++++++++..|+|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999988999999999999985
No 113
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=134.24 Aligned_cols=87 Identities=30% Similarity=0.478 Sum_probs=80.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
.+..+.++|||+|||.++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++ +++..++|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 344478999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCCCCCC
Q psy6490 235 KHATPKNR 242 (398)
Q Consensus 235 ~~~~~~~~ 242 (398)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99886554
No 114
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=5e-18 Score=136.23 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=76.4
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~ 323 (398)
.....++|||+||+.++++++|+++|++||.|++|+|+++. +++++|||||+|++.++|+++++ |||..|+|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999997 89999999999999888777664 99999999999999
Q ss_pred ecCchH
Q psy6490 324 KAQPKE 329 (398)
Q Consensus 324 ~a~~k~ 329 (398)
|+.++.
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997653
No 115
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=132.99 Aligned_cols=85 Identities=29% Similarity=0.529 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
.+.++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 477999999999999999999999999999999999999899999999999999999999995 9999999999999999
Q ss_pred CCCCCC
Q psy6490 238 TPKNRP 243 (398)
Q Consensus 238 ~~~~~~ 243 (398)
..+...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 877654
No 116
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=134.28 Aligned_cols=89 Identities=25% Similarity=0.457 Sum_probs=81.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeC-CCCCCcccEEEEEEcChHhHHHHHh-C-CCcccCCcc
Q psy6490 155 TGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKD-PITQRSRGFGFITFAEPETVEKVLK-V-PIHTLDGKK 231 (398)
Q Consensus 155 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~-~~~~~~~g~afV~f~~~e~a~~al~-~-~~~~~~g~~ 231 (398)
.......++|||+|||.++++++|+++|+.||.|.+|+++++ +.++.++|||||+|.+.++|++|++ + ++..|+|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344557899999999999999999999999999999999999 7899999999999999999999998 7 899999999
Q ss_pred cCCCCCCCCCCC
Q psy6490 232 IDPKHATPKNRP 243 (398)
Q Consensus 232 l~v~~~~~~~~~ 243 (398)
|.|.++..+...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876553
No 117
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-19 Score=137.57 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=74.6
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
....++|||+|||+++|++||+++|+.||.| +|+|++|+ +++++|||||+|++.++|++|+++|+..|+||.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 3456789999999999999999999999954 89999997 899999999999999888888899999999999999998
Q ss_pred CchH
Q psy6490 326 QPKE 329 (398)
Q Consensus 326 ~~k~ 329 (398)
...+
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 118
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-19 Score=143.63 Aligned_cols=88 Identities=17% Similarity=0.299 Sum_probs=79.7
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
....++|||+|||+++|+++|+++|+.||.|.++.++.+..+++++|||||+|++.++|++|++||+..|+|+.|+|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34568999999999999999999999999999877778878999999999999999888888889999999999999999
Q ss_pred CchHHHhh
Q psy6490 326 QPKEAVQA 333 (398)
Q Consensus 326 ~~k~~~~~ 333 (398)
..++....
T Consensus 102 ~~~~~~~~ 109 (124)
T 1wel_A 102 TKKGMLEK 109 (124)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98876543
No 119
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6.3e-19 Score=136.92 Aligned_cols=85 Identities=24% Similarity=0.397 Sum_probs=77.3
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCce-eCCEEEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQ-FGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHM-IKNKKVEC 322 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~-~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~-i~g~~i~v 322 (398)
....++|||+|||.++|+++|+++|+. ||.|.+|.|++|. ++.++|||||+|.+.++|++++ .||+.. |+|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999997 9999999999999988777766 599999 99999999
Q ss_pred EecCchHHH
Q psy6490 323 KKAQPKEAV 331 (398)
Q Consensus 323 ~~a~~k~~~ 331 (398)
.|+.++..+
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999877644
No 120
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=4.6e-19 Score=171.90 Aligned_cols=85 Identities=20% Similarity=0.436 Sum_probs=78.1
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+||++.+|+++|+++|+.||.|+.|.|+.+..++.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999999999999999999999999988887766 7899999999999999
Q ss_pred cCchHH
Q psy6490 325 AQPKEA 330 (398)
Q Consensus 325 a~~k~~ 330 (398)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987654
No 121
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=133.56 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=75.5
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++++ +||+..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345688999999999999999999999999999999999899999999999999988776666 7999999999999999
Q ss_pred cCch
Q psy6490 325 AQPK 328 (398)
Q Consensus 325 a~~k 328 (398)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 122
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=1.9e-18 Score=139.34 Aligned_cols=86 Identities=31% Similarity=0.487 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
....+.++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++ +++..|+|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344578999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred CCCCCCC
Q psy6490 235 KHATPKN 241 (398)
Q Consensus 235 ~~~~~~~ 241 (398)
.++..+.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987654
No 123
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=132.43 Aligned_cols=85 Identities=16% Similarity=0.356 Sum_probs=78.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
...+.++|||+|||.++++++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34478999999999999999999999999999999999998 89999999999999999999996 89999999999999
Q ss_pred CCCCCCC
Q psy6490 236 HATPKNR 242 (398)
Q Consensus 236 ~~~~~~~ 242 (398)
++.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9876543
No 124
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=133.82 Aligned_cols=86 Identities=21% Similarity=0.480 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCC-CCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPIT-QRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~-~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++++++|+++|+.|| |.+|+|++++.+ ++++|||||+|.+.++|++||.+++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVD 89 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEE
Confidence 344779999999999999999999999999 999999999987 999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy6490 236 HATPKNRP 243 (398)
Q Consensus 236 ~~~~~~~~ 243 (398)
++..+...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 98876553
No 125
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=135.21 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=76.4
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEE-TVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~-v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||+++|+++|+++|+.||.|.+ |+|+++ .+++++|||||+|++.++|++|++.|+..|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 345689999999999999999999999999998 888888 789999999999999999988887799999999999999
Q ss_pred cCchHH
Q psy6490 325 AQPKEA 330 (398)
Q Consensus 325 a~~k~~ 330 (398)
+..++.
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 876653
No 126
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=134.57 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=75.0
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++++++|+++|++||.|++|+|++++ +++++|||||+|++.++|++++ .||+..|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4457899999999999999999999999999999999996 6999999999999988777766 5999999999999999
Q ss_pred cCchH
Q psy6490 325 AQPKE 329 (398)
Q Consensus 325 a~~k~ 329 (398)
++...
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87643
No 127
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.3e-19 Score=139.98 Aligned_cols=85 Identities=24% Similarity=0.321 Sum_probs=77.7
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCe----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEE
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKV----EETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECK 323 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i----~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~ 323 (398)
...+|||+|||+++|++||+++|+.||.| .+|+|++| .+|+++|||||+|++.++|++|+++|+..|+||.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 46789999999999999999999999975 68999998 58999999999999999999988889999999999999
Q ss_pred ecCchHHHhh
Q psy6490 324 KAQPKEAVQA 333 (398)
Q Consensus 324 ~a~~k~~~~~ 333 (398)
.+..++....
T Consensus 101 ~a~~~e~~~~ 110 (123)
T 2dha_A 101 RSTAAEVQQV 110 (123)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9988876654
No 128
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=131.15 Aligned_cols=79 Identities=10% Similarity=0.136 Sum_probs=68.6
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCce--eCCEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHM--IKNKKVE 321 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~--i~g~~i~ 321 (398)
...++++|||+|||+++|+++|+++|++||.|++|+++++ ||||||+|++.++|++|+ .|++.. |+||.|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3456789999999999999999999999999999998754 789999999988776665 577764 8999999
Q ss_pred EEecCchH
Q psy6490 322 CKKAQPKE 329 (398)
Q Consensus 322 v~~a~~k~ 329 (398)
|.|++.++
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998763
No 129
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=9.9e-19 Score=133.43 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=73.0
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
..++|||+|||+++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++++ .||+..|+|+.|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4588999999999999999999999999999999999999999999999999988777666 599999999999999986
Q ss_pred c
Q psy6490 327 P 327 (398)
Q Consensus 327 ~ 327 (398)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 130
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-19 Score=135.93 Aligned_cols=81 Identities=20% Similarity=0.400 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCC--EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCc----ccCCcc
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGA--VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIH----TLDGKK 231 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~--i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~----~~~g~~ 231 (398)
..-.+|||+|||+++|+++|+++|++||. |.+|++++|+.+|++||||||+|.+.++|++|++ +++. .++||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 36789999999999999999999999995 6799999999999999999999999999999998 6654 589999
Q ss_pred cCCCCCCC
Q psy6490 232 IDPKHATP 239 (398)
Q Consensus 232 l~v~~~~~ 239 (398)
|.|++++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99998764
No 131
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.1e-18 Score=137.14 Aligned_cols=82 Identities=23% Similarity=0.403 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
.+..+.++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++ +++..++|++|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344578999999999999999999999999999999999999899999999999999999999998 8999999999998
Q ss_pred CCC
Q psy6490 235 KHA 237 (398)
Q Consensus 235 ~~~ 237 (398)
+++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 875
No 132
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=130.17 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=71.9
Q ss_pred ccccceeecCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVK----AYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVE 321 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~----~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~ 321 (398)
...++|||+|||+++++++|+ ++|++||.|++|+|++|+.+ +|||||+|++.++|++|+ .|||..|+|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356789999999999999999 99999999999999998655 899999999988776666 5999999999999
Q ss_pred EEecCchH
Q psy6490 322 CKKAQPKE 329 (398)
Q Consensus 322 v~~a~~k~ 329 (398)
|+|++++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997654
No 133
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.6e-18 Score=131.76 Aligned_cols=87 Identities=39% Similarity=0.615 Sum_probs=79.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~ 235 (398)
....+.++|||+|||.++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|++|++ ++..++|+.|.|.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEE
Confidence 344578999999999999999999999999999999999999999999999999999999999999 4678999999999
Q ss_pred CCCCCCCC
Q psy6490 236 HATPKNRP 243 (398)
Q Consensus 236 ~~~~~~~~ 243 (398)
++..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99876653
No 134
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=1.9e-18 Score=128.30 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=76.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCC
Q psy6490 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 161 ~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~ 239 (398)
+.+|||+|||.++++++|+++|+.||.|.++++++++.++.++|||||+|.+.++|++|++ +++..++|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4689999999999999999999999999999999999899999999999999999999998 899999999999999876
Q ss_pred CC
Q psy6490 240 KN 241 (398)
Q Consensus 240 ~~ 241 (398)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 135
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-19 Score=138.03 Aligned_cols=87 Identities=18% Similarity=0.243 Sum_probs=79.5
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGK---VEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVEC 322 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~---i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v 322 (398)
....++|||+|||+++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++++++|+..|+||.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 456788999999999999999999999998 89999999976 99999999999999999888889999999999999
Q ss_pred EecCchHHHhh
Q psy6490 323 KKAQPKEAVQA 333 (398)
Q Consensus 323 ~~a~~k~~~~~ 333 (398)
.++.+++....
T Consensus 87 ~~a~~~~~~~~ 97 (107)
T 2lmi_A 87 YEINNEDVDAL 97 (107)
T ss_dssp EECCHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 99998776544
No 136
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.8e-18 Score=125.62 Aligned_cols=73 Identities=7% Similarity=0.192 Sum_probs=65.5
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCEEEEEEecCc
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~~i~v~~a~~ 327 (398)
+..|||+||++.+||++|+++|.+||+|.++.+.. +||||||+|.++++| +|+..||+..++||.|+|++|..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 56799999999999999999999999999999865 599999999997555 55567999999999999999953
No 137
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=131.42 Aligned_cols=82 Identities=27% Similarity=0.493 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34478999999999999999999999999999999999999999999999999999999999997 99999999999988
Q ss_pred CCC
Q psy6490 236 HAT 238 (398)
Q Consensus 236 ~~~ 238 (398)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 763
No 138
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=6.3e-19 Score=133.09 Aligned_cols=81 Identities=20% Similarity=0.461 Sum_probs=71.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFG--AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
.+|||+|||.++|+++|+++|+.|| .|.+++++.|+.+|+++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999997 99999999999999987
Q ss_pred CCCC
Q psy6490 239 PKNR 242 (398)
Q Consensus 239 ~~~~ 242 (398)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 139
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=133.60 Aligned_cols=80 Identities=14% Similarity=0.280 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
+...++|||+|||.++|+++|+++|+.||.|.+|++++++. |.++|||||+|.+.++|.+|+++++..++|+.|.|.+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34679999999999999999999999999999999999987 99999999999999999999999999999999998765
Q ss_pred C
Q psy6490 238 T 238 (398)
Q Consensus 238 ~ 238 (398)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 140
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=132.26 Aligned_cols=87 Identities=28% Similarity=0.424 Sum_probs=79.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 155 TGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 155 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
.....+.++|||+|||.++|+++|+++|+.||.|.+|+++.+ ++.++|||||+|.+.++|++|++ +++..++|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344558899999999999999999999999999999999998 88999999999999999999998 899999999999
Q ss_pred CCCCCCCCCC
Q psy6490 234 PKHATPKNRP 243 (398)
Q Consensus 234 v~~~~~~~~~ 243 (398)
|.++..+...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999876553
No 141
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=4.1e-18 Score=142.46 Aligned_cols=86 Identities=19% Similarity=0.304 Sum_probs=78.4
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++|+++|+++|++||.|++|.|++++.++.++|||||+|++.++|++|++ ||+..|+|+.|+|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999888877665 899999999999999
Q ss_pred cCchHHH
Q psy6490 325 AQPKEAV 331 (398)
Q Consensus 325 a~~k~~~ 331 (398)
++++...
T Consensus 116 a~~~~~~ 122 (156)
T 1h2v_Z 116 DAGFKEG 122 (156)
T ss_dssp ESCCCTT
T ss_pred CCCCCCc
Confidence 9875543
No 142
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=129.89 Aligned_cols=84 Identities=33% Similarity=0.622 Sum_probs=79.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
..++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 67999999999999999999999999999999999999999999999999999999999998 89999999999999988
Q ss_pred CCCCC
Q psy6490 239 PKNRP 243 (398)
Q Consensus 239 ~~~~~ 243 (398)
.+...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76553
No 143
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=130.49 Aligned_cols=81 Identities=30% Similarity=0.518 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
+.++|||+|||.++++++|+++|+.||.|.++++++++.++.++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 67899999999999999999999999999999999999899999999999999999999998 89999999999998876
Q ss_pred CC
Q psy6490 239 PK 240 (398)
Q Consensus 239 ~~ 240 (398)
.+
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 53
No 144
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=1.2e-18 Score=140.24 Aligned_cols=88 Identities=14% Similarity=0.300 Sum_probs=79.5
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++|+++|+++|++||.|.+|.|++++.++.++|||||+|.+.++|++|+ .||+..|+|+.|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3445789999999999999999999999999999999999889999999999999988887776 699999999999999
Q ss_pred ecCchHHHh
Q psy6490 324 KAQPKEAVQ 332 (398)
Q Consensus 324 ~a~~k~~~~ 332 (398)
|+.++....
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998765443
No 145
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=133.70 Aligned_cols=85 Identities=35% Similarity=0.679 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
..+.++|||+|||.++++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3478999999999999999999999999999999999999999999999999999999999996 899999999999999
Q ss_pred CCCCCC
Q psy6490 237 ATPKNR 242 (398)
Q Consensus 237 ~~~~~~ 242 (398)
+..+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 876654
No 146
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=132.38 Aligned_cols=85 Identities=32% Similarity=0.613 Sum_probs=79.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34477999999999999999999999999999999999999899999999999999999999998 89999999999999
Q ss_pred CCCCCC
Q psy6490 236 HATPKN 241 (398)
Q Consensus 236 ~~~~~~ 241 (398)
++..+.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 987653
No 147
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=135.33 Aligned_cols=86 Identities=17% Similarity=0.364 Sum_probs=76.7
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCC-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHH-HC--CceeCCEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGK-VEETVML-MDQQTKRHRGFGFVTFENEEVVDHICE-IH--FHMIKNKKVE 321 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~-i~~v~i~-~~~~~~~~kg~afV~F~~~eaa~a~~~-l~--~~~i~g~~i~ 321 (398)
...++|||+|||.++|+++|+++|++||. |.+|.++ .+..++.++|||||+|.+.++|+++++ |+ +..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35688999999999999999999999998 9999998 788889999999999999888877764 75 5899999999
Q ss_pred EEecCchHHHh
Q psy6490 322 CKKAQPKEAVQ 332 (398)
Q Consensus 322 v~~a~~k~~~~ 332 (398)
|.|+.++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99999876543
No 148
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=131.50 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=70.6
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-H--CCceeCCEEE
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-I--HFHMIKNKKV 320 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l--~~~~i~g~~i 320 (398)
......++|||+|||+++++++|+++|++||.|++|+++++ ||||||+|++.++|++|++ | ++..|+|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34456789999999999999999999999999999998765 8999999999887766664 4 6788999999
Q ss_pred EEEecCchHHH
Q psy6490 321 ECKKAQPKEAV 331 (398)
Q Consensus 321 ~v~~a~~k~~~ 331 (398)
+|.|++.+...
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999876543
No 149
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=1.9e-18 Score=135.32 Aligned_cols=87 Identities=54% Similarity=0.973 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~ 235 (398)
....+.++|||+|||.++++++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|++|++.++..++|+.|.|.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999976789999999999
Q ss_pred CCCCCCC
Q psy6490 236 HATPKNR 242 (398)
Q Consensus 236 ~~~~~~~ 242 (398)
++..+..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9876654
No 150
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-18 Score=134.70 Aligned_cols=86 Identities=30% Similarity=0.446 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
..+.++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3478999999999999999999999999999999999999899999999999999999999997 899999999999999
Q ss_pred CCCCCCC
Q psy6490 237 ATPKNRP 243 (398)
Q Consensus 237 ~~~~~~~ 243 (398)
+..+...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8876554
No 151
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=140.39 Aligned_cols=87 Identities=22% Similarity=0.411 Sum_probs=79.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEE--EEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCc----ccC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTD--VLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIH----TLD 228 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~--~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~----~~~ 228 (398)
..+...++|||+|||+++|+++|+++|++||.|.. |+|++|+.+|++||||||+|.+. +|.+|++ +++. .++
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 33457899999999999999999999999999976 99999999999999999999999 9999998 8898 999
Q ss_pred CcccCCCCCCCCCCC
Q psy6490 229 GKKIDPKHATPKNRP 243 (398)
Q Consensus 229 g~~l~v~~~~~~~~~ 243 (398)
|+.|.|+++..+...
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999876543
No 152
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=7.4e-18 Score=131.05 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCC---cccC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDG---KKID 233 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g---~~l~ 233 (398)
....++|||+|||.++++++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|++|++ +++..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3468999999999999999999999999999999999998 79999999999999999999998 89999888 9999
Q ss_pred CCCCCCCCCC
Q psy6490 234 PKHATPKNRP 243 (398)
Q Consensus 234 v~~~~~~~~~ 243 (398)
|.++..+...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9998876543
No 153
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=134.13 Aligned_cols=84 Identities=25% Similarity=0.546 Sum_probs=74.4
Q ss_pred CccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEE
Q psy6490 243 PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVE 321 (398)
Q Consensus 243 ~~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~ 321 (398)
.......++|||+|||.++++++|+++|++||.|++|+++++. +.++|||||+|++.++|++++ .|||..|+|+.|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445567899999999999999999999999999999999985 348999999999987776666 5999999999999
Q ss_pred EEecCch
Q psy6490 322 CKKAQPK 328 (398)
Q Consensus 322 v~~a~~k 328 (398)
|+|++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999876
No 154
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=3.4e-19 Score=134.57 Aligned_cols=81 Identities=33% Similarity=0.648 Sum_probs=70.7
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCchH
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~k~ 329 (398)
++|||+|||.++++++|+++|++||.|++|.+.+++.+++++|||||+|++.++.+++..|||..|+|+.|+|+++.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTHHHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 57999999999999999999999999999999999999999999999999977445555699999999999999998765
Q ss_pred H
Q psy6490 330 A 330 (398)
Q Consensus 330 ~ 330 (398)
.
T Consensus 82 ~ 82 (90)
T 2ki2_A 82 S 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 155
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=3.1e-18 Score=133.47 Aligned_cols=88 Identities=25% Similarity=0.430 Sum_probs=80.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCccc---CCcc
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTL---DGKK 231 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~---~g~~ 231 (398)
..+...++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++ +++..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 344578999999999999999999999999999999999999999999999999999999999998 888887 8999
Q ss_pred cCCCCCCCCCCC
Q psy6490 232 IDPKHATPKNRP 243 (398)
Q Consensus 232 l~v~~~~~~~~~ 243 (398)
|.|.++..+...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999998876553
No 156
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=3.9e-18 Score=133.81 Aligned_cols=94 Identities=17% Similarity=0.391 Sum_probs=81.6
Q ss_pred cCCcccCCCCCCCCCCCccCccccceeecCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHH
Q psy6490 227 LDGKKIDPKHATPKNRPKIGNRTKKIFVGGVSQD-TSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVD 305 (398)
Q Consensus 227 ~~g~~l~v~~~~~~~~~~~~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~ 305 (398)
..|..|.+..+............++|||+|||.+ +++++|+++|++||.|++|.| ++|||||+|++.++|+
T Consensus 5 ~~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 4677888888776666666666789999999999 999999999999999999988 4789999999977776
Q ss_pred HHH-HHCCceeCCEEEEEEecCch
Q psy6490 306 HIC-EIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 306 a~~-~l~~~~i~g~~i~v~~a~~k 328 (398)
+++ +||+..|+|+.|+|.|++..
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCC
T ss_pred HHHHHcCCCEECCeEEEEEECCCC
Confidence 666 79999999999999999754
No 157
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-18 Score=131.40 Aligned_cols=83 Identities=23% Similarity=0.351 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTD-VLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~-~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~ 236 (398)
....++|||+|||+++|+++|+++|+.||.|.+ |+|+.+ .+|+++|||||+|.+.++|++||+.++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 346799999999999999999999999999987 888888 689999999999999999999999999999999999988
Q ss_pred CCCCC
Q psy6490 237 ATPKN 241 (398)
Q Consensus 237 ~~~~~ 241 (398)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 76544
No 158
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=129.52 Aligned_cols=84 Identities=25% Similarity=0.384 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhc-CCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcc-cCCcccCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGM-FGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHT-LDGKKIDP 234 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~-~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~-~~g~~l~v 234 (398)
....++|||+|||.++|+++|+++|+. ||.|.+|++++++ +++++|||||+|.+.++|++|++ +++.. ++|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 347799999999999999999999999 9999999999999 99999999999999999999999 89999 99999999
Q ss_pred CCCCCCCC
Q psy6490 235 KHATPKNR 242 (398)
Q Consensus 235 ~~~~~~~~ 242 (398)
.++..+..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99976654
No 159
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=4.4e-18 Score=128.99 Aligned_cols=82 Identities=21% Similarity=0.385 Sum_probs=74.0
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++++++|+++|++||.|++|+|.++ +++++|||||+|.+.++|++++ .||+..|+|+.|+|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999885 7899999999999988777666 5999999999999999
Q ss_pred cCchH
Q psy6490 325 AQPKE 329 (398)
Q Consensus 325 a~~k~ 329 (398)
++++.
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98764
No 160
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=127.51 Aligned_cols=76 Identities=42% Similarity=0.719 Sum_probs=69.9
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
++|||+|||.++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|+++++..+..|+|+.|+|+||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999988999999999999998888777764339999999999997
No 161
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=2.4e-18 Score=131.50 Aligned_cols=83 Identities=20% Similarity=0.416 Sum_probs=78.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
++++|||+|||.++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999997 89999999999999988
Q ss_pred CCCC
Q psy6490 239 PKNR 242 (398)
Q Consensus 239 ~~~~ 242 (398)
.+..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 162
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=134.28 Aligned_cols=92 Identities=22% Similarity=0.449 Sum_probs=81.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPK 240 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~ 240 (398)
++|||+|||.++|+++|+++|++||.|.+|++.++ ++|||||+|.+.++|++|++ +++..++|+.|.|.++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999987 68999999999999999998 8999999999999988775
Q ss_pred CCCcc-------CccccceeecCCC
Q psy6490 241 NRPKI-------GNRTKKIFVGGVS 258 (398)
Q Consensus 241 ~~~~~-------~~~~~~l~V~nLp 258 (398)
..... .....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 53322 2236789999996
No 163
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=130.70 Aligned_cols=81 Identities=20% Similarity=0.404 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCccc
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTD--------VLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTL 227 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~ 227 (398)
.....++|||+|||.++++++|+++|++||.|.+ +++++++.+|+++|||||+|.+.++|++|++ +++..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3447899999999999999999999999999999 9999999999999999999999999999998 899999
Q ss_pred CCcccCCCCC
Q psy6490 228 DGKKIDPKHA 237 (398)
Q Consensus 228 ~g~~l~v~~~ 237 (398)
+|+.|.|.++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999998875
No 164
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.7e-18 Score=130.43 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CC--CcccCCcccCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VP--IHTLDGKKIDP 234 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~--~~~~~g~~l~v 234 (398)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|++|++ ++ +..++|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 347899999999999999999999999999999999875 7999999999999999998 54 46899999999
Q ss_pred CCCCCCCCCc
Q psy6490 235 KHATPKNRPK 244 (398)
Q Consensus 235 ~~~~~~~~~~ 244 (398)
.++..+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998765543
No 165
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=130.49 Aligned_cols=83 Identities=25% Similarity=0.379 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEE-EEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcc----c
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVT-DVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKK----I 232 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~-~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~----l 232 (398)
...++|||+|||.++++++|+++|++||.|. +|++++++.+++++|||||+|.+.++|++|++ +++..++|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3789999999999999999999999999999 99999999999999999999999999999999 8999999999 9
Q ss_pred CCCCCCCCC
Q psy6490 233 DPKHATPKN 241 (398)
Q Consensus 233 ~v~~~~~~~ 241 (398)
.|.++....
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 998887654
No 166
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=2.2e-18 Score=128.63 Aligned_cols=80 Identities=31% Similarity=0.466 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
.+.++|||+|||.++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 378999999999999999999999999999999999998899999999999999999999996 8999999999998876
Q ss_pred C
Q psy6490 238 T 238 (398)
Q Consensus 238 ~ 238 (398)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 167
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-19 Score=132.03 Aligned_cols=80 Identities=15% Similarity=0.424 Sum_probs=73.5
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
...++|||+|||.++++++|+++|++||.|.+|.|++++.++.++|||||+|.+.++|++++ .|||..|+|+.|+|.|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35688999999999999999999999999999999999999999999999999988777666 59999999999998876
Q ss_pred C
Q psy6490 326 Q 326 (398)
Q Consensus 326 ~ 326 (398)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 168
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-18 Score=133.17 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3467999999999999999999999999999999999999999999999999999999999998 899999999999998
Q ss_pred CCCC
Q psy6490 237 ATPK 240 (398)
Q Consensus 237 ~~~~ 240 (398)
+..+
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8654
No 169
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=1.1e-18 Score=139.30 Aligned_cols=82 Identities=20% Similarity=0.330 Sum_probs=74.7
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEe
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVE--ETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~--~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~ 324 (398)
...++|||+|||+++|+++|+++|+.| .|. +|+|++|+. |+++|||||+|++.++|++|+++++..|+||.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 456789999999999999999999999 666 899999976 9999999999999999999888899999999999999
Q ss_pred cCchHH
Q psy6490 325 AQPKEA 330 (398)
Q Consensus 325 a~~k~~ 330 (398)
+..++.
T Consensus 118 a~~~e~ 123 (126)
T 2hgm_A 118 SSQEEV 123 (126)
T ss_dssp ECHHHH
T ss_pred CCHHHh
Confidence 987664
No 170
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=133.86 Aligned_cols=88 Identities=20% Similarity=0.372 Sum_probs=81.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEE--------EEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcc
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVT--------DVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHT 226 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~ 226 (398)
.+....++|||+|||.++++++|+++|+.||.|. .|+++.++.+++++|||||+|.+.++|++|++ +++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3455789999999999999999999999999999 69999998899999999999999999999998 89999
Q ss_pred cCCcccCCCCCCCCCCC
Q psy6490 227 LDGKKIDPKHATPKNRP 243 (398)
Q Consensus 227 ~~g~~l~v~~~~~~~~~ 243 (398)
|+|+.|.|.++..+...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999998876543
No 171
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=1.7e-18 Score=133.95 Aligned_cols=84 Identities=29% Similarity=0.539 Sum_probs=76.3
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEec
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKA 325 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a 325 (398)
....++|||+|||.++++++|+++|+.||.|.+|+|++++ +++++|||||+|++.++|+++++ ++..|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 3456899999999999999999999999999999999997 99999999999999888888888 999999999999999
Q ss_pred CchHHH
Q psy6490 326 QPKEAV 331 (398)
Q Consensus 326 ~~k~~~ 331 (398)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 877654
No 172
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=1.8e-18 Score=125.84 Aligned_cols=75 Identities=45% Similarity=0.812 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 163 ~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
+|||+|||.++++++|+++|++||.|.++++.+++.+++++|||||+|.+.++|++|+++++..++|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999998999999999999999999999999999999999988764
No 173
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=132.16 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
....++|||+|||+++|+++|+++|+.||. ++|+|++|+ +++++|||||+|.+.++|++||++++..|+|+.|.|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 346789999999999999999999999995 599999998 899999999999999999999999999999999999877
Q ss_pred CCCC
Q psy6490 238 TPKN 241 (398)
Q Consensus 238 ~~~~ 241 (398)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 174
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=3.5e-18 Score=151.66 Aligned_cols=84 Identities=11% Similarity=0.251 Sum_probs=76.4
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEEe
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFG--KVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECKK 324 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G--~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~~ 324 (398)
..++|||+||++++|+++|+++|++|| .|++|+|++|+.++++||||||+|++.++|++|++ ||++.|+|+.|+|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999888877775 999999999999999
Q ss_pred cCchHHH
Q psy6490 325 AQPKEAV 331 (398)
Q Consensus 325 a~~k~~~ 331 (398)
++++...
T Consensus 147 a~~~~~~ 153 (229)
T 3q2s_C 147 VNKQFLS 153 (229)
T ss_dssp CCHHHHH
T ss_pred CCCCccc
Confidence 9876543
No 175
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=132.94 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=73.7
Q ss_pred ccccceeecCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHH-HHCCceeCCEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVK---AYFSQFGKVEETVMLMDQQTK---RHRGFGFVTFENEEVVDHIC-EIHFHMIKNKK 319 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~---~~F~~~G~i~~v~i~~~~~~~---~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~ 319 (398)
...++|||+|||+++++++|+ ++|++||.|.+|.|+++..++ +++|||||+|++.++|++|+ .||+..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346789999999999999999 999999999999999987654 56699999999988776666 58999999999
Q ss_pred EEEEecCchH
Q psy6490 320 VECKKAQPKE 329 (398)
Q Consensus 320 i~v~~a~~k~ 329 (398)
|+|.|+.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998775
No 176
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=130.82 Aligned_cols=81 Identities=16% Similarity=0.327 Sum_probs=72.4
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++|+++|+++|++||.|++|+|..+ +.++|||||+|++.++|++++ .||+..|+|+.|+|+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999998654 457999999999988887766 7999999999999999
Q ss_pred cCchH
Q psy6490 325 AQPKE 329 (398)
Q Consensus 325 a~~k~ 329 (398)
++++.
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98764
No 177
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=132.26 Aligned_cols=84 Identities=20% Similarity=0.487 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCC-CCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDP-ITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~-~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++++++|+++|+.|| |.+|++++++ .+|+++|||||+|.+.++|++|+++++..++|+.|.|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 344789999999999999999999999999 9999999998 68999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy6490 236 HATPKN 241 (398)
Q Consensus 236 ~~~~~~ 241 (398)
++..+.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 987653
No 178
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-18 Score=132.27 Aligned_cols=78 Identities=10% Similarity=0.140 Sum_probs=67.9
Q ss_pred CccccceeecCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCC--ceeCCEEEE
Q psy6490 246 GNRTKKIFVGGVSQ-DTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHF--HMIKNKKVE 321 (398)
Q Consensus 246 ~~~~~~l~V~nLp~-~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~--~~i~g~~i~ 321 (398)
....++|||+|||+ ++|++||+++|++||.|.+|+|+++ +|||||+|++.++|++|+ .||+ ..|+||.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 44678999999999 9999999999999999999999876 589999999987776665 5664 569999999
Q ss_pred EEecCchH
Q psy6490 322 CKKAQPKE 329 (398)
Q Consensus 322 v~~a~~k~ 329 (398)
|.|++.+.
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998654
No 179
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-18 Score=130.38 Aligned_cols=84 Identities=33% Similarity=0.595 Sum_probs=78.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCC---CCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPI---TQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~---~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
+.++|||+|||.++++++|+++|+.||.|.+|++.+++. ++.++|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 679999999999999999999999999999999999876 66899999999999999999999 89999999999999
Q ss_pred CCCCCCCC
Q psy6490 236 HATPKNRP 243 (398)
Q Consensus 236 ~~~~~~~~ 243 (398)
++..+...
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99876554
No 180
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-18 Score=136.42 Aligned_cols=83 Identities=10% Similarity=0.180 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCE-EEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAV-TDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i-~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v 234 (398)
......++|||+|||+++|+++|+++|+.||.| .+|+|++|+ +|+++|||||+|.+.++|++||++++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence 344577999999999999999999999999999 899999998 999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy6490 235 KHATP 239 (398)
Q Consensus 235 ~~~~~ 239 (398)
.++..
T Consensus 89 ~~a~~ 93 (114)
T 2cpy_A 89 HVVTL 93 (114)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88764
No 181
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=127.23 Aligned_cols=79 Identities=19% Similarity=0.425 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
+.++|||+|||.++++++|+++|++||.|.+++++.++.++.++|||||+|.+.++|++|++ +++..++|+.|++.+..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 67999999999999999999999999999999999999999999999999999999999998 89999999999988764
No 182
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-19 Score=136.84 Aligned_cols=83 Identities=20% Similarity=0.403 Sum_probs=75.5
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecC
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~ 326 (398)
...++|||+|||.++|+++|+++|+.||.|.. .++++..+++++|||||+|.+.++|+++++||+..|+|+.|+|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 45679999999999999999999999999988 77778788999999999999988888877899999999999999998
Q ss_pred chHH
Q psy6490 327 PKEA 330 (398)
Q Consensus 327 ~k~~ 330 (398)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 183
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=128.85 Aligned_cols=87 Identities=28% Similarity=0.541 Sum_probs=78.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 155 TGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 155 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
.......++|||+|||.++++++|+++|+.||.|.+|++++++. .++|||||+|.+.++|++|++ +++..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455789999999999999999999999999999999999863 389999999999999999998 899999999999
Q ss_pred CCCCCCCCCC
Q psy6490 234 PKHATPKNRP 243 (398)
Q Consensus 234 v~~~~~~~~~ 243 (398)
|.++..+...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cq3_A 87 VNNATARVMT 96 (103)
T ss_dssp EEECCSSCCC
T ss_pred EEEcccCCCC
Confidence 9998876553
No 184
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=129.79 Aligned_cols=86 Identities=20% Similarity=0.346 Sum_probs=77.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
.+....++|||+|||.++++++|+++|+.||.|.+|++++++.+ ++|||||+|.+.++|++|++ +++..++|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 44557899999999999999999999999999999999998543 68999999999999999998 8999999999999
Q ss_pred CCCCCCCCC
Q psy6490 235 KHATPKNRP 243 (398)
Q Consensus 235 ~~~~~~~~~ 243 (398)
.++......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999876543
No 185
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=131.51 Aligned_cols=82 Identities=21% Similarity=0.441 Sum_probs=73.8
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCcee--------C
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMI--------K 316 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i--------~ 316 (398)
....++|||+|||.++++++|+++|+.||.|.+|+|+++. ++.++|||||+|.+.++|++++ .|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4456889999999999999999999999999999999997 8999999999999987776666 5999999 5
Q ss_pred CEEEEEEecCch
Q psy6490 317 NKKVECKKAQPK 328 (398)
Q Consensus 317 g~~i~v~~a~~k 328 (398)
++.|+|+|+.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999864
No 186
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=130.29 Aligned_cols=84 Identities=27% Similarity=0.449 Sum_probs=79.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEE-EEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDV-LIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~-~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
..++|||+|||.++++++|+++|+.||.|.++ ++++++.++.++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 67999999999999999999999999999999 999998899999999999999999999999 8999999999999998
Q ss_pred CCCCCC
Q psy6490 238 TPKNRP 243 (398)
Q Consensus 238 ~~~~~~ 243 (398)
..+...
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 876543
No 187
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=8.8e-18 Score=132.98 Aligned_cols=83 Identities=37% Similarity=0.668 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
...++|||+|||.++++++|+++|++||.|.+|++..++ +++++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 367999999999999999999999999999999999998 99999999999999999999998 8999999999999998
Q ss_pred CCCCC
Q psy6490 238 TPKNR 242 (398)
Q Consensus 238 ~~~~~ 242 (398)
.....
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76543
No 188
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=6.7e-18 Score=127.11 Aligned_cols=81 Identities=23% Similarity=0.481 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~ 239 (398)
+.++|||+|||.++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|++|+.+++..++|+.|.|.++..
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred C
Q psy6490 240 K 240 (398)
Q Consensus 240 ~ 240 (398)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 189
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.2e-18 Score=133.10 Aligned_cols=80 Identities=20% Similarity=0.320 Sum_probs=70.0
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HC--CceeCCEEEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IH--FHMIKNKKVEC 322 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~--~~~i~g~~i~v 322 (398)
....++|||+|||+++||++|+++|++||.|++|+|+++ ||||||+|++.++|++|++ ++ +..|+|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345788999999999999999999999999999999876 7999999999888877664 65 56899999999
Q ss_pred EecCchHHH
Q psy6490 323 KKAQPKEAV 331 (398)
Q Consensus 323 ~~a~~k~~~ 331 (398)
.|++.+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999877544
No 190
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=1.6e-18 Score=133.47 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCC-c
Q psy6490 159 PTSAKLFVGGLSW------QTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDG-K 230 (398)
Q Consensus 159 ~~~~~l~v~nLp~------~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g-~ 230 (398)
..+++|||+|||. ++++++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|++|++ +++..++| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3578999999999 99999999999999999999999999999999999999999999999997 89999999 9
Q ss_pred ccCCCCCCC
Q psy6490 231 KIDPKHATP 239 (398)
Q Consensus 231 ~l~v~~~~~ 239 (398)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999988754
No 191
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=6.1e-18 Score=129.01 Aligned_cols=82 Identities=29% Similarity=0.465 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++++++|+++|+.||.|.+|++.+++. ++++|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 344789999999999999999999999999999999999985 8999999999999999999998 89999999999998
Q ss_pred CCCC
Q psy6490 236 HATP 239 (398)
Q Consensus 236 ~~~~ 239 (398)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8753
No 192
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.1e-18 Score=134.49 Aligned_cols=86 Identities=40% Similarity=0.830 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
....++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++||+.++..|+|+.|.|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34669999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred CCCCCC
Q psy6490 238 TPKNRP 243 (398)
Q Consensus 238 ~~~~~~ 243 (398)
..+...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 876653
No 193
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-18 Score=131.05 Aligned_cols=84 Identities=10% Similarity=0.212 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34467999999999999999999999999999999999998899999999999999999999996 89999999999999
Q ss_pred CCCCC
Q psy6490 236 HATPK 240 (398)
Q Consensus 236 ~~~~~ 240 (398)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 87643
No 194
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=4.6e-18 Score=133.45 Aligned_cols=84 Identities=15% Similarity=0.263 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3477999999999999999999999999999999999999999999999999999999999998 899999999999998
Q ss_pred CCCCC
Q psy6490 237 ATPKN 241 (398)
Q Consensus 237 ~~~~~ 241 (398)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 86544
No 195
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=130.70 Aligned_cols=84 Identities=24% Similarity=0.360 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++++++|+++|+.||.|.+|++++++ +++++|||||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34478999999999999999999999999999999999998 69999999999999999999998 89999999999999
Q ss_pred CCCCCC
Q psy6490 236 HATPKN 241 (398)
Q Consensus 236 ~~~~~~ 241 (398)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 886543
No 196
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=134.96 Aligned_cols=81 Identities=23% Similarity=0.483 Sum_probs=74.3
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++++|++++.+++++|||||+|.+.++|++++ .|||..|+|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999988887766 699999999999999
Q ss_pred ec
Q psy6490 324 KA 325 (398)
Q Consensus 324 ~a 325 (398)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 197
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=6.7e-18 Score=140.63 Aligned_cols=80 Identities=28% Similarity=0.536 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFG--AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
..++|||+|||+++|+++|+++|+.|| .|.+|+++.|+.+|+++|||||+|.+.++|++||+ +++..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 668999999999999999999999999 99999999999999999999999999999999998 799999999999998
Q ss_pred CCC
Q psy6490 237 ATP 239 (398)
Q Consensus 237 ~~~ 239 (398)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 198
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=2.1e-17 Score=128.06 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=70.6
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++|+++|+++|++||.|++|.++ +|||||+|++.++|++++ .||+..|+|+.|+|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3457899999999999999999999999999999886 459999999988887766 5999999999999999
Q ss_pred cCchHHHhh
Q psy6490 325 AQPKEAVQA 333 (398)
Q Consensus 325 a~~k~~~~~ 333 (398)
+.++.....
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 988765543
No 199
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=2.5e-17 Score=124.77 Aligned_cols=82 Identities=23% Similarity=0.412 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
...++|||+|||.++++++|+++|++||.|.++++.++ +++++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36799999999999999999999999999999999985 78899999999999999999998 8999999999999998
Q ss_pred CCCCC
Q psy6490 238 TPKNR 242 (398)
Q Consensus 238 ~~~~~ 242 (398)
.....
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 76654
No 200
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=9.1e-18 Score=129.72 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=68.2
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCC--ceeCCEEEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHF--HMIKNKKVEC 322 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~--~~i~g~~i~v 322 (398)
....++|||+|||+++++++|+++|++||.|.+|+++++ ||||||+|++.++|++++ .|++ ..|+|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 446789999999999999999999999999999998764 789999999988777666 4654 5699999999
Q ss_pred EecCchHH
Q psy6490 323 KKAQPKEA 330 (398)
Q Consensus 323 ~~a~~k~~ 330 (398)
.|++.+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99987653
No 201
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=128.12 Aligned_cols=85 Identities=31% Similarity=0.432 Sum_probs=74.4
Q ss_pred ccCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEE
Q psy6490 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVEC 322 (398)
Q Consensus 244 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v 322 (398)
......++|||+|||.++++++|+++|+.|+ .|++++++.+++++|||||+|.+.++|++|+ .||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445678999999999999999999999874 6778888889999999999999988887766 59999999999999
Q ss_pred EecCchHHH
Q psy6490 323 KKAQPKEAV 331 (398)
Q Consensus 323 ~~a~~k~~~ 331 (398)
+|++++..+
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999887543
No 202
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=5.4e-18 Score=142.09 Aligned_cols=135 Identities=24% Similarity=0.315 Sum_probs=100.1
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCC-----CCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHH
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKS-----SGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYF 182 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f 182 (398)
..|++++.+.+...+..+...++............... ................++|||+|||.++++++|+++|
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F 91 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVF 91 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 45677788888888877764444221111111111100 0001111122333467999999999999999999999
Q ss_pred hcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCCC
Q psy6490 183 GMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNR 242 (398)
Q Consensus 183 ~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~~ 242 (398)
+.||.|.+|++++|+.+|+++|||||+|.+.++|++|++ +++..++|+.|.|.++.....
T Consensus 92 ~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 92 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999999999999999999999999999997 899999999999999876544
No 203
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=127.89 Aligned_cols=81 Identities=14% Similarity=0.292 Sum_probs=71.4
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++|+++|+++|++||.| +++++ .+++++|||||+|.+.++|+++++ ||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999987 45666 689999999999999888877765 99999999999999
Q ss_pred ecCchH
Q psy6490 324 KAQPKE 329 (398)
Q Consensus 324 ~a~~k~ 329 (398)
|++++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998764
No 204
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-18 Score=134.41 Aligned_cols=82 Identities=23% Similarity=0.401 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
+...++|||+|||.++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|++|+.+++..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 34678999999999999999999999999999999999999999999999999999999999998999999999999876
Q ss_pred CC
Q psy6490 238 TP 239 (398)
Q Consensus 238 ~~ 239 (398)
..
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 205
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=122.22 Aligned_cols=76 Identities=14% Similarity=0.410 Sum_probs=68.7
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-H-CCceeCCEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-I-HFHMIKNKKVEC 322 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l-~~~~i~g~~i~v 322 (398)
.....++|||+|||.++++++|+++|++||.|.+|+++++ +|||||+|.+.++|+++++ | ++..|+|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999875 7899999999888877775 7 999999999999
Q ss_pred EecC
Q psy6490 323 KKAQ 326 (398)
Q Consensus 323 ~~a~ 326 (398)
+|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9984
No 206
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=3.5e-18 Score=124.28 Aligned_cols=75 Identities=47% Similarity=0.710 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 163 ~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
+|||+|||.++++++|+++|++||.|.++++.+++.+++++|||||+|.+.++|++|++.++..++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999999899999999988653
No 207
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=6.3e-18 Score=137.49 Aligned_cols=88 Identities=32% Similarity=0.514 Sum_probs=81.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
.+....++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++ +++..|+|+.|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 444578999999999999999999999999999999999999899999999999999999999998 8999999999999
Q ss_pred CCCCCCCCC
Q psy6490 235 KHATPKNRP 243 (398)
Q Consensus 235 ~~~~~~~~~ 243 (398)
.++......
T Consensus 122 ~~a~~~~~~ 130 (135)
T 2lea_A 122 QMARYGRPP 130 (135)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 998876543
No 208
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6e-18 Score=135.72 Aligned_cols=83 Identities=14% Similarity=0.284 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKH 236 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~ 236 (398)
.....++|||+|||+++|+++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|++||++++..|+|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34467999999999999999999999999999987777777799999999999999999999999999999999999987
Q ss_pred CCC
Q psy6490 237 ATP 239 (398)
Q Consensus 237 ~~~ 239 (398)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 209
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.8e-18 Score=131.87 Aligned_cols=84 Identities=20% Similarity=0.494 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
...++|||+|||.++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 367899999999999999999999999999999999999899999999999999999999997 9999999999999998
Q ss_pred CCCCC
Q psy6490 238 TPKNR 242 (398)
Q Consensus 238 ~~~~~ 242 (398)
..+..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 76543
No 210
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=2e-17 Score=129.17 Aligned_cols=78 Identities=10% Similarity=0.166 Sum_probs=67.9
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFG-KVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G-~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
..++|||+|||+++++++|+++|++|| .|..+.|..+ .++|||||+|++.++|++|+ .|||..|+|+.|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 467899999999999999999999999 8999988533 47999999999988776666 69999999999999999
Q ss_pred CchH
Q psy6490 326 QPKE 329 (398)
Q Consensus 326 ~~k~ 329 (398)
....
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7654
No 211
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=4.6e-17 Score=141.15 Aligned_cols=105 Identities=33% Similarity=0.552 Sum_probs=85.7
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEe
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKK 324 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~ 324 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|++++++++..|+|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHhhhh--hcCCccccCCCCCC
Q psy6490 325 AQPKEAVQANL--LVGKRVILGPLGLR 349 (398)
Q Consensus 325 a~~k~~~~~~~--~~~~~~~~~~~~~~ 349 (398)
+..+....... ...+.++++++...
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~ 115 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKED 115 (196)
T ss_dssp CCC-----------CCSEEEEECCTTT
T ss_pred ccCcccccccccCCCcceEEEeCCCCC
Confidence 98765443221 23355666665433
No 212
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=3.4e-17 Score=131.37 Aligned_cols=85 Identities=26% Similarity=0.358 Sum_probs=79.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++++++|+++|++||.|.+|++.+++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44578999999999999999999999999999999999998 99999999999999999999999 89999999999999
Q ss_pred CCCCCCC
Q psy6490 236 HATPKNR 242 (398)
Q Consensus 236 ~~~~~~~ 242 (398)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 8876544
No 213
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=126.54 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CC--CcccCCcccCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VP--IHTLDGKKIDP 234 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~--~~~~~g~~l~v 234 (398)
..++++|||+|||.++++++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++ ++ ...++|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 347799999999999999999999999999999999864 7999999999999999998 54 34599999999
Q ss_pred CCCCCCCCC
Q psy6490 235 KHATPKNRP 243 (398)
Q Consensus 235 ~~~~~~~~~ 243 (398)
.++..+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 998766543
No 214
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=3.9e-18 Score=130.11 Aligned_cols=79 Identities=9% Similarity=0.211 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
..++|||+|||.++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 56999999999999999999999999999999999998899999999999999999999998 89999999999998765
No 215
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=1.7e-17 Score=129.53 Aligned_cols=81 Identities=26% Similarity=0.377 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++++++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 33478999999999999999999999999999999999998 99999999999999999999999 89999999999988
Q ss_pred CCC
Q psy6490 236 HAT 238 (398)
Q Consensus 236 ~~~ 238 (398)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 216
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-19 Score=139.94 Aligned_cols=87 Identities=18% Similarity=0.334 Sum_probs=78.6
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEE--------TVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK 316 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~--------v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~ 316 (398)
....++|||+|||.++++++|+++|++||.|.+ |+|++|+.+++++|||||+|.+.++|++|+ .||+..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345688999999999999999999999999999 899999889999999999999988877766 59999999
Q ss_pred CEEEEEEecCchHHHh
Q psy6490 317 NKKVECKKAQPKEAVQ 332 (398)
Q Consensus 317 g~~i~v~~a~~k~~~~ 332 (398)
|+.|+|+|+.++..+.
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999998876553
No 217
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=8.4e-18 Score=129.78 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=69.7
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCch
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQPK 328 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~k 328 (398)
++|||+|||.++|+++|+++|++||.|++|.++++ ++|||||+|.+.++|++|+ .||+..|+|+.|+|+|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 6899999999988777766 59999999999999999887
Q ss_pred HHH
Q psy6490 329 EAV 331 (398)
Q Consensus 329 ~~~ 331 (398)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 633
No 218
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=124.94 Aligned_cols=78 Identities=18% Similarity=0.444 Sum_probs=69.5
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC--CEEEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK--NKKVEC 322 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~--g~~i~v 322 (398)
....++|||+|||.++|+++|+++|++||.|++|.+.++ +|||||+|.+.++|++++ .||+..|+ |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345688999999999999999999999999999998754 789999999988777766 59999999 999999
Q ss_pred EecCchH
Q psy6490 323 KKAQPKE 329 (398)
Q Consensus 323 ~~a~~k~ 329 (398)
+|++++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998764
No 219
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=8.2e-18 Score=133.59 Aligned_cols=80 Identities=18% Similarity=0.278 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGA---VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDP 234 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~---i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v 234 (398)
....++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|++||++++..|+|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 346799999999999999999999999998 89999999986 99999999999999999999999999999999988
Q ss_pred CCCC
Q psy6490 235 KHAT 238 (398)
Q Consensus 235 ~~~~ 238 (398)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7764
No 220
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=124.83 Aligned_cols=82 Identities=16% Similarity=0.334 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
....++|||+|||.++++++|+++|+.| .|.+|+++++ .+|+++|||||+|.+.++|++|+++++..++|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 3467999999999999999999999999 9999999999 6899999999999999999999999999999999999988
Q ss_pred CCCC
Q psy6490 238 TPKN 241 (398)
Q Consensus 238 ~~~~ 241 (398)
..+.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 221
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=130.46 Aligned_cols=78 Identities=23% Similarity=0.415 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~ 238 (398)
.+.++|||+|||+++|+++|+++|+.| .|.+|+|++|+. |+++|||||+|.+.++|++||++++..|+||.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 356899999999999999999999999 899999999975 999999999999999999999999999999999887664
No 222
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=6.3e-17 Score=142.46 Aligned_cols=101 Identities=19% Similarity=0.296 Sum_probs=84.5
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
.+.++|||+|||+++||++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++|+ .+|+..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35678999999999999999999999999999999999999999999999999987776655 79999999999999999
Q ss_pred CchHHHhhhhhcCCccccCCCCCC
Q psy6490 326 QPKEAVQANLLVGKRVILGPLGLR 349 (398)
Q Consensus 326 ~~k~~~~~~~~~~~~~~~~~~~~~ 349 (398)
........ ....+++++++...
T Consensus 93 ~~~~~~~~--~~~~~l~v~nl~~~ 114 (213)
T 4f02_A 93 QRDPSLRK--SGVGNIFIKNLDKS 114 (213)
T ss_dssp CCCTHHHH--HCTTEEEEESCCTT
T ss_pred cccccccc--cccccceECCcccc
Confidence 87655443 23345666665443
No 223
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=2.3e-17 Score=131.59 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEE--EEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVT--DVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKH 236 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~--~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~ 236 (398)
...++|||+|||+++|+++|+++|+.| .|+ +|+|++|+. |+++|||||+|.+.++|++||++++..|+||.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 467899999999999999999999999 677 999999986 9999999999999999999999888999999999877
Q ss_pred CC
Q psy6490 237 AT 238 (398)
Q Consensus 237 ~~ 238 (398)
+.
T Consensus 118 a~ 119 (126)
T 2hgm_A 118 SS 119 (126)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 224
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=129.09 Aligned_cols=79 Identities=20% Similarity=0.474 Sum_probs=71.0
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
...++|||+|||.++++++|+++|++||.|.+|+|+++ +|||||+|++.++|++|+ .|||..|+|+.|+|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35678999999999999999999999999999999876 789999999988777666 79999999999999999
Q ss_pred CchHHH
Q psy6490 326 QPKEAV 331 (398)
Q Consensus 326 ~~k~~~ 331 (398)
+++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 887543
No 225
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-18 Score=134.93 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=72.6
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++|+++|+++|+.||.|.++.+..+..+++++|||||+|.+.++|++|+ .||+..|+|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345789999999999999999999999999955443333347889999999999988777766 5899999999999999
Q ss_pred cCchHHH
Q psy6490 325 AQPKEAV 331 (398)
Q Consensus 325 a~~k~~~ 331 (398)
+.++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9887543
No 226
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.6e-17 Score=126.21 Aligned_cols=85 Identities=16% Similarity=0.363 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
......++|||+|||.++|+++|+++|++||.|.+|++..+ +.++|||||+|.+.++|++|++ +++..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34447899999999999999999999999999999999664 4589999999999999999996 8999999999999
Q ss_pred CCCCCCCCC
Q psy6490 235 KHATPKNRP 243 (398)
Q Consensus 235 ~~~~~~~~~ 243 (398)
.++..+...
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999876543
No 227
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=134.72 Aligned_cols=82 Identities=32% Similarity=0.482 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
......++|||+|||.++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++ +++..++|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344578999999999999999999999999999999999999999999999999999999999997 8999999999988
Q ss_pred CCC
Q psy6490 235 KHA 237 (398)
Q Consensus 235 ~~~ 237 (398)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 764
No 228
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=131.85 Aligned_cols=85 Identities=11% Similarity=0.232 Sum_probs=72.6
Q ss_pred CccccceeecCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVK----AYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKV 320 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~----~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i 320 (398)
....++|||+||++++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|..|+ .|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456789999999999999876 6999999999987753 5788999999999977776555 799999999999
Q ss_pred EEEecCchHHHhh
Q psy6490 321 ECKKAQPKEAVQA 333 (398)
Q Consensus 321 ~v~~a~~k~~~~~ 333 (398)
+|.|++.+.....
T Consensus 103 ~V~~a~~~~~~~~ 115 (127)
T 2a3j_A 103 VITFSETPQSQVA 115 (127)
T ss_dssp EEEECCCCCHHHH
T ss_pred EEEEccCcchhcc
Confidence 9999998766543
No 229
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.9e-18 Score=123.02 Aligned_cols=76 Identities=61% Similarity=1.088 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
++|||+|||.++++++|+++|++||.|.++++.+++.+++++|||||+|.+.++|++|++..+..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999998999999999999999999999994448899999988765
No 230
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=3e-17 Score=129.80 Aligned_cols=82 Identities=13% Similarity=0.243 Sum_probs=72.7
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
...++|||+|||.++++++|+++|+.||.|.+|.++++ +.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45678999999999999999999999999999999876 455999999999988777766 59999999999999999
Q ss_pred CchHHH
Q psy6490 326 QPKEAV 331 (398)
Q Consensus 326 ~~k~~~ 331 (398)
.++...
T Consensus 83 ~~~~~~ 88 (115)
T 3lqv_A 83 NANRAF 88 (115)
T ss_dssp CHHHHT
T ss_pred cCChhh
Confidence 876543
No 231
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=130.07 Aligned_cols=82 Identities=13% Similarity=0.223 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGA---VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKID 233 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~---i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~ 233 (398)
+....++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|++||++++..++|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 3347799999999999999999999999998 89999999986 9999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy6490 234 PKHATP 239 (398)
Q Consensus 234 v~~~~~ 239 (398)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 988754
No 232
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=3.5e-17 Score=122.97 Aligned_cols=77 Identities=32% Similarity=0.581 Sum_probs=62.9
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCce--eCCEEEEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHM--IKNKKVECK 323 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~--i~g~~i~v~ 323 (398)
.....+|||+|||+++|+++|+++|++||.|++|+|+++ +||||||+|++.++|++ +++.. ++|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEE
Confidence 345678999999999999999999999999999999875 69999999999888874 45554 569999999
Q ss_pred ecCchHH
Q psy6490 324 KAQPKEA 330 (398)
Q Consensus 324 ~a~~k~~ 330 (398)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9998764
No 233
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=2.1e-17 Score=133.00 Aligned_cols=86 Identities=15% Similarity=0.302 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
...+.++|||+|||.++|+++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 33467999999999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred CCCCCCC
Q psy6490 236 HATPKNR 242 (398)
Q Consensus 236 ~~~~~~~ 242 (398)
++..+..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 8875543
No 234
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=128.18 Aligned_cols=78 Identities=12% Similarity=0.204 Sum_probs=67.5
Q ss_pred CccccceeecCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HH--CCceeCCEEEE
Q psy6490 246 GNRTKKIFVGGVSQD-TSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EI--HFHMIKNKKVE 321 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l--~~~~i~g~~i~ 321 (398)
....++|||+|||++ +++++|+++|++||.|.+|+|+++ ||||||+|++.++|++|+ .| ++..|+||.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 999999999999999999999743 799999999988776665 46 45679999999
Q ss_pred EEecCchH
Q psy6490 322 CKKAQPKE 329 (398)
Q Consensus 322 v~~a~~k~ 329 (398)
|.|+..+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997664
No 235
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=2.7e-17 Score=127.77 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=70.6
Q ss_pred ccccceeecCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCE-
Q psy6490 247 NRTKKIFVGGVSQDT------SAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNK- 318 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~------tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~- 318 (398)
...++|||+|||+.+ ++++|+++|++||.|.+|.|. +.+|+++|||||+|.+.++|.+|+ .|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346789999999999 789999999999999999988 368899999999999977666555 6999999999
Q ss_pred EEEEEecCch
Q psy6490 319 KVECKKAQPK 328 (398)
Q Consensus 319 ~i~v~~a~~k 328 (398)
.|+|.|+...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 236
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.4e-17 Score=128.71 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=69.8
Q ss_pred cceeecCC----CCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC-----HHH---HHHH-H--HHCCce
Q psy6490 250 KKIFVGGV----SQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN-----EEV---VDHI-C--EIHFHM 314 (398)
Q Consensus 250 ~~l~V~nL----p~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~-----~ea---a~a~-~--~l~~~~ 314 (398)
..|||+|| ++.+++++|+++|+.||+|.+|.++.|+.||+++|||||+|.| .++ |.++ . +++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999995 232 4444 4 479999
Q ss_pred eCCEEEEEEecCchH
Q psy6490 315 IKNKKVECKKAQPKE 329 (398)
Q Consensus 315 i~g~~i~v~~a~~k~ 329 (398)
|+||.|+|.+-+...
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999976543
No 237
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4e-17 Score=127.80 Aligned_cols=83 Identities=22% Similarity=0.381 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEe-eCCCCCCcccEEEEEEcChHhHHHHHh-CC--CcccCCcccCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGA-VTDVLIM-KDPITQRSRGFGFITFAEPETVEKVLK-VP--IHTLDGKKIDP 234 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~-i~~~~~~-~~~~~~~~~g~afV~f~~~e~a~~al~-~~--~~~~~g~~l~v 234 (398)
+.++|||+|||.++++++|+++|+.||. |.+|+++ .++.++.++|||||+|.+.++|++|++ ++ +..++|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 6799999999999999999999999998 9999998 888889999999999999999999999 65 48899999999
Q ss_pred CCCCCCCC
Q psy6490 235 KHATPKNR 242 (398)
Q Consensus 235 ~~~~~~~~ 242 (398)
.++..+..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987654
No 238
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=124.70 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-C--CCcccCCcccC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-V--PIHTLDGKKID 233 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~--~~~~~~g~~l~ 233 (398)
...++++|||+|||.++++++|+++|+.||.|.+|+++++ ||||||+|.+.++|.+|++ + ++..++|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3347899999999999999999999999999999998875 8999999999999999998 3 56779999999
Q ss_pred CCCCCCCCCC
Q psy6490 234 PKHATPKNRP 243 (398)
Q Consensus 234 v~~~~~~~~~ 243 (398)
|.++..+...
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999866543
No 239
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=2.7e-17 Score=131.90 Aligned_cols=82 Identities=18% Similarity=0.455 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~ 239 (398)
..++|||+|||.++|+++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|++|+++++..|+|+.|.|.++..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 56899999999999999999999999999999999999899999999999999999999999999999999999998875
Q ss_pred CC
Q psy6490 240 KN 241 (398)
Q Consensus 240 ~~ 241 (398)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 240
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-17 Score=127.75 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCC--cccCCcccCCC
Q psy6490 160 TSAKLFVGGLSW-QTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPI--HTLDGKKIDPK 235 (398)
Q Consensus 160 ~~~~l~v~nLp~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~--~~~~g~~l~v~ 235 (398)
++++|||+|||+ ++|+++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|++ +++ ..|+|++|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 689999999999 9999999999999999999999876 6899999999999999998 554 45999999999
Q ss_pred CCCCCCC
Q psy6490 236 HATPKNR 242 (398)
Q Consensus 236 ~~~~~~~ 242 (398)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x4d_A 88 LSQKYKR 94 (102)
T ss_dssp EECCCTT
T ss_pred ECCCCCC
Confidence 9876544
No 241
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.3e-17 Score=126.06 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=69.3
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCC-----EEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKN-----KKV 320 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g-----~~i 320 (398)
...++|||+|||+++|+++|+++|++||.|++|.|+++ |||||+|++.++|++|+ +||+..|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45688999999999999999999999999999999876 79999999987776666 599999999 999
Q ss_pred EEEecCchHH
Q psy6490 321 ECKKAQPKEA 330 (398)
Q Consensus 321 ~v~~a~~k~~ 330 (398)
+|+++.++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999988653
No 242
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.3e-17 Score=126.44 Aligned_cols=75 Identities=11% Similarity=0.299 Sum_probs=67.4
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
..++|||+|||.++++++|+++|++||.|++|++. +++|||||+|.+.++|++++ .|||..|+|+.|+|+|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46789999999999999999999999999999987 34899999999977776655 799999999999999997
Q ss_pred ch
Q psy6490 327 PK 328 (398)
Q Consensus 327 ~k 328 (398)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 243
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=1.3e-17 Score=135.25 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGA---VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDP 234 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~---i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v 234 (398)
....++|||+|||+++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||++++..|+||.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 346799999999999999999999999999 89999999986 99999999999999999999999999999999998
Q ss_pred CCCC
Q psy6490 235 KHAT 238 (398)
Q Consensus 235 ~~~~ 238 (398)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 8764
No 244
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=4.7e-17 Score=127.02 Aligned_cols=79 Identities=25% Similarity=0.400 Sum_probs=69.1
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++|+++|+++|++||.|++|.++ +|||||+|.+.++|++++ .|||..|+|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999987 789999999988777666 599999999999999
Q ss_pred ecCchHHH
Q psy6490 324 KAQPKEAV 331 (398)
Q Consensus 324 ~a~~k~~~ 331 (398)
|++++..+
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99876543
No 245
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=120.43 Aligned_cols=73 Identities=16% Similarity=0.319 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCc-cc
Q psy6490 161 SAKLFVGGLSWQT------SSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGK-KI 232 (398)
Q Consensus 161 ~~~l~v~nLp~~~------t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~-~l 232 (398)
+++|||+|||.++ ++++|+++|++||.|.++++.+ .+|+++|||||+|.+.++|++|++ +++..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3799999999999 7799999999999999999873 588999999999999999999998 899999999 88
Q ss_pred CCC
Q psy6490 233 DPK 235 (398)
Q Consensus 233 ~v~ 235 (398)
.|.
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 246
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=7e-18 Score=127.30 Aligned_cols=80 Identities=30% Similarity=0.613 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPK 240 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~ 240 (398)
++|||+|||.++++++|+++|+.||.|.++++.+++.+|+++|||||+|.+.+ |.+|++ +++..++|+.|.|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999998 8999999999999998765
Q ss_pred CC
Q psy6490 241 NR 242 (398)
Q Consensus 241 ~~ 242 (398)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 247
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=124.52 Aligned_cols=81 Identities=21% Similarity=0.494 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCC-cccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQR-SRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~-~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
..++|||+|||.++++++|+++|+.||.|.++++..++.++. ++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999987766 89999999999999999999 8999999999999887
Q ss_pred CCC
Q psy6490 238 TPK 240 (398)
Q Consensus 238 ~~~ 240 (398)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 248
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=129.70 Aligned_cols=85 Identities=24% Similarity=0.386 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH---HHHhcCCCEEEEEEeeCCCCC---CcccEEEEEEcChHhHHHHHh-CCCcccCCc
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLR---EYFGMFGAVTDVLIMKDPITQ---RSRGFGFITFAEPETVEKVLK-VPIHTLDGK 230 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~---~~f~~~G~i~~~~~~~~~~~~---~~~g~afV~f~~~e~a~~al~-~~~~~~~g~ 230 (398)
....++|||+|||.++++++|+ ++|++||.|.+|++.+++.++ +++|||||+|.+.++|++|++ +++..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3467899999999999999999 999999999999999988654 466999999999999999999 799999999
Q ss_pred ccCCCCCCCCCC
Q psy6490 231 KIDPKHATPKNR 242 (398)
Q Consensus 231 ~l~v~~~~~~~~ 242 (398)
.|.|.++..+..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999987653
No 249
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=123.43 Aligned_cols=77 Identities=21% Similarity=0.543 Sum_probs=69.4
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++++++|+++|++||.|++|++. +|||||+|++.++|++++ .||+..|+|+.|+|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467899999999999999999999999999999986 679999999988887766 6999999999999999
Q ss_pred cCchHH
Q psy6490 325 AQPKEA 330 (398)
Q Consensus 325 a~~k~~ 330 (398)
++++..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 250
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=129.58 Aligned_cols=84 Identities=29% Similarity=0.591 Sum_probs=76.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 155 TGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 155 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
.......++|||+|||.++++++|+++|++||.|.+|++.+++ +.++|||||+|.+.++|++|++ +++..++|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445578999999999999999999999999999999999985 4589999999999999999998 899999999999
Q ss_pred CCCCCCC
Q psy6490 234 PKHATPK 240 (398)
Q Consensus 234 v~~~~~~ 240 (398)
|.++..+
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9988754
No 251
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=126.80 Aligned_cols=85 Identities=16% Similarity=0.270 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCC------CHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccC
Q psy6490 156 GDDPTSAKLFVGGLSWQT------SSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLD 228 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~------t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~ 228 (398)
......++|||+|||.++ ++++|+++|++||.|.+|++. +.+|+++|||||+|.+.++|.+|++ +++..++
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344467899999999999 789999999999999999998 3588999999999999999999999 8999999
Q ss_pred Cc-ccCCCCCCCCCC
Q psy6490 229 GK-KIDPKHATPKNR 242 (398)
Q Consensus 229 g~-~l~v~~~~~~~~ 242 (398)
|+ .|.|.++....+
T Consensus 88 g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 88 KQHTFRVNLFTDFDK 102 (105)
T ss_dssp TTCEEEEECSCCCCC
T ss_pred CCceEEEEEcchHhh
Confidence 98 999998875443
No 252
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=125.21 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCc--ccCCcccCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIH--TLDGKKIDPK 235 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~--~~~g~~l~v~ 235 (398)
.++++|||+|||.++|+++|+++|++||.|.+++++++ ||||||+|.+.++|.+|++ +++. .++|++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 37899999999999999999999999999999999863 8999999999999999998 5554 4889999999
Q ss_pred CCCCCC
Q psy6490 236 HATPKN 241 (398)
Q Consensus 236 ~~~~~~ 241 (398)
+++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 987654
No 253
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.1e-16 Score=122.45 Aligned_cols=75 Identities=21% Similarity=0.411 Sum_probs=67.3
Q ss_pred CccccceeecCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 246 GNRTKKIFVGGVSQ-DTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 246 ~~~~~~l~V~nLp~-~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
....++|||+|||. ++++++|+++|+.||.|.+|++. +|||||+|++.++|++++ .|||..|+|+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44678999999998 99999999999999999999882 789999999988777666 599999999999999
Q ss_pred ecCch
Q psy6490 324 KAQPK 328 (398)
Q Consensus 324 ~a~~k 328 (398)
|++++
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99765
No 254
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.3e-17 Score=128.27 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CC--CcccCCcccCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VP--IHTLDGKKIDP 234 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~--~~~~~g~~l~v 234 (398)
..++++|||+|||+++|+++|+++|+.||.|.+|+|+++ ||||||+|.+.++|++|++ ++ +..++|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346799999999999999999999999999999999876 8999999999999999998 44 35799999999
Q ss_pred CCCCCCCCCc
Q psy6490 235 KHATPKNRPK 244 (398)
Q Consensus 235 ~~~~~~~~~~ 244 (398)
.++..+....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9988765543
No 255
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-17 Score=125.01 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLR----EYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~----~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
+.++|||+|||.++++++|+ ++|++||.|.+|+++.++.+ +|||||+|.+.++|++|++ +++..++|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 66899999999999999999 99999999999999998765 8899999999999999998 9999999999999
Q ss_pred CCCCCCCC
Q psy6490 235 KHATPKNR 242 (398)
Q Consensus 235 ~~~~~~~~ 242 (398)
.++.....
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99876544
No 256
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=126.49 Aligned_cols=75 Identities=21% Similarity=0.407 Sum_probs=68.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcc
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKK 231 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~ 231 (398)
..+...++|||+|||.++++++|+++|+.||.|.+|++++++ ++.++|||||+|.+.++|++|++ +++..++++.
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 334577999999999999999999999999999999999998 99999999999999999999998 8888885444
No 257
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=123.35 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=64.1
Q ss_pred cceeecCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCE-EEE
Q psy6490 250 KKIFVGGVSQDT------SAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNK-KVE 321 (398)
Q Consensus 250 ~~l~V~nLp~~~------tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~-~i~ 321 (398)
++|||+|||..+ ++++|+++|++||.|.+|++. +.+|+++|||||+|.+.++|++|+ .|||..|+|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999987 358899999999999988777766 5999999999 887
Q ss_pred E
Q psy6490 322 C 322 (398)
Q Consensus 322 v 322 (398)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 258
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=5.8e-17 Score=135.43 Aligned_cols=86 Identities=22% Similarity=0.386 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++|+++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33477999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred CCCCCCC
Q psy6490 236 HATPKNR 242 (398)
Q Consensus 236 ~~~~~~~ 242 (398)
++.....
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9876543
No 259
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9e-17 Score=121.70 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=69.0
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++|.+++ +||||+|++.++|++++ .||+..|+|+.|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999873 49999999987776666 699999999999999
Q ss_pred ecCchHH
Q psy6490 324 KAQPKEA 330 (398)
Q Consensus 324 ~a~~k~~ 330 (398)
|++++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9987643
No 260
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=2.6e-17 Score=125.99 Aligned_cols=82 Identities=18% Similarity=0.372 Sum_probs=72.7
Q ss_pred ccccceeecCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVK----AYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVE 321 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~----~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~ 321 (398)
...++|||+|||.++++++|+ ++|++||.|.+|.+.+ ++.++|||||+|.+.++|++++ .|||..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 457899999999999999999 9999999999998873 4678999999999988776666 5999999999999
Q ss_pred EEecCchHHH
Q psy6490 322 CKKAQPKEAV 331 (398)
Q Consensus 322 v~~a~~k~~~ 331 (398)
|.|++++...
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9999887644
No 261
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=7.7e-17 Score=123.86 Aligned_cols=79 Identities=24% Similarity=0.496 Sum_probs=70.1
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++++++|+++|++||.|++|++.++ +|||||+|++.++|++++ .||+..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999998755 789999999977776655 799999999999999
Q ss_pred ecCchH
Q psy6490 324 KAQPKE 329 (398)
Q Consensus 324 ~a~~k~ 329 (398)
|++++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 998754
No 262
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.6e-17 Score=134.99 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
....++|||+|||+++|+++|+++|+.|| |++|+|++|+. ++++|||||+|.+.++|++||++++..|+|+.|.|..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 34678999999999999999999999999 77999999985 99999999999999999999999999999999999887
Q ss_pred CCCCC
Q psy6490 238 TPKNR 242 (398)
Q Consensus 238 ~~~~~ 242 (398)
.....
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 263
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.5e-17 Score=124.75 Aligned_cols=83 Identities=24% Similarity=0.426 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.+...++|||+|||.++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44578999999999999999999999999977 56666 588999999999999999999998 99999999999999
Q ss_pred CCCCCCCC
Q psy6490 236 HATPKNRP 243 (398)
Q Consensus 236 ~~~~~~~~ 243 (398)
++..+...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 98876543
No 264
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-17 Score=124.61 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=69.8
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|+++++ |||..|+|+.|+|.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4467899999999999999999999999988765 3578899999999999888877665 999999999999999
Q ss_pred cCchH
Q psy6490 325 AQPKE 329 (398)
Q Consensus 325 a~~k~ 329 (398)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 98764
No 265
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.6e-17 Score=128.49 Aligned_cols=81 Identities=30% Similarity=0.588 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~ 238 (398)
...++|||+|||.++++++|+++|+.||.|.+|++++++ +|+++|||||+|.+.++|++|++ ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 367999999999999999999999999999999999998 99999999999999999999999 8889999999988776
Q ss_pred CCC
Q psy6490 239 PKN 241 (398)
Q Consensus 239 ~~~ 241 (398)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 266
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.8e-17 Score=123.02 Aligned_cols=79 Identities=11% Similarity=0.255 Sum_probs=68.7
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++++++|+++|+.||.|. ++++.+ .++|||||+|.+.++|++++ .|||..|+|+.|+|+|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34567999999999999999999999999997 666654 56899999999987776665 7999999999999999
Q ss_pred cCchH
Q psy6490 325 AQPKE 329 (398)
Q Consensus 325 a~~k~ 329 (398)
++++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98763
No 267
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=122.32 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=68.3
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQF--GKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVE 321 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~--G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~ 321 (398)
.....++|||+|||.++|+++|+++|++| |.|.+|.+. +|||||+|.+.++|++++ .||+..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 999988764 679999999988777766 5999999999999
Q ss_pred EEecCchH
Q psy6490 322 CKKAQPKE 329 (398)
Q Consensus 322 v~~a~~k~ 329 (398)
|.|++++.
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 268
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.9e-16 Score=133.45 Aligned_cols=96 Identities=19% Similarity=0.372 Sum_probs=82.9
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecCc
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~~ 327 (398)
.++|||+|||.++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|++++ .++|..++|+.|+|.|+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 578999999999999999999999999999999999889999999999999988887777 5999999999999999987
Q ss_pred hHHHhhhhhcCCccccCCCCC
Q psy6490 328 KEAVQANLLVGKRVILGPLGL 348 (398)
Q Consensus 328 k~~~~~~~~~~~~~~~~~~~~ 348 (398)
+... ...+.++++++..
T Consensus 82 ~~~~----~~~~~l~v~nl~~ 98 (167)
T 1fxl_A 82 SSAS----IRDANLYVSGLPK 98 (167)
T ss_dssp CCGG----GTTCEEEEESCCT
T ss_pred Cccc----CCCCcEEECCCCC
Confidence 6543 2334556655543
No 269
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=8.6e-18 Score=129.73 Aligned_cols=84 Identities=26% Similarity=0.379 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
....++|||+|||.++|+++|+++|+.||.|.+ .++.+..+++++|||||+|.+.++|++|+++++..++|+.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 346789999999999999999999999999888 6677777889999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy6490 238 TPKNR 242 (398)
Q Consensus 238 ~~~~~ 242 (398)
..+..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76554
No 270
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=4.5e-17 Score=119.18 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
.+..|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.+.++|++|++ +|+..+.|+.|+|+.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 568999999999999999999999999999999965 59999999999999999999 8999999999988777
No 271
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=122.91 Aligned_cols=80 Identities=29% Similarity=0.485 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
...+.++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3447799999999999999999999999999999999864 7999999999999999997 89999999999999
Q ss_pred CCCCCCC
Q psy6490 236 HATPKNR 242 (398)
Q Consensus 236 ~~~~~~~ 242 (398)
++..+..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9877654
No 272
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-17 Score=124.12 Aligned_cols=78 Identities=15% Similarity=0.335 Sum_probs=66.8
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCC-ceeCCEEEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGK-VEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHF-HMIKNKKVECK 323 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~-i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~-~~i~g~~i~v~ 323 (398)
...++|||+|||.++|+++|+++|++||. |..+.+ . ++|||||+|.+.++|++++ +||+ ..|+|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-L------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-E------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-c------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45688999999999999999999999999 665555 2 4789999999988776666 6999 99999999999
Q ss_pred ecCchHHH
Q psy6490 324 KAQPKEAV 331 (398)
Q Consensus 324 ~a~~k~~~ 331 (398)
|+.++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99877543
No 273
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=6.6e-17 Score=143.45 Aligned_cols=80 Identities=20% Similarity=0.464 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFG--AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G--~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
..++|||+||++++|+++|+++|++|| .|++|+|++|+.++++||||||+|.+.++|++||+ +++..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 678999999999999999999999999 99999999999999999999999999999999999 899999999999988
Q ss_pred CCC
Q psy6490 237 ATP 239 (398)
Q Consensus 237 ~~~ 239 (398)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 274
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=119.32 Aligned_cols=76 Identities=25% Similarity=0.426 Sum_probs=68.0
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||.++|+++|+++|++||.|.+|++++ +||||+|.+.++|++++ .||+..|+|+.|+|.|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999873 49999999988777666 5999999999999999
Q ss_pred cCchH
Q psy6490 325 AQPKE 329 (398)
Q Consensus 325 a~~k~ 329 (398)
+.++.
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 275
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=118.78 Aligned_cols=76 Identities=25% Similarity=0.473 Sum_probs=69.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-C-CCcccCCcccCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-V-PIHTLDGKKIDP 234 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~-~~~~~~g~~l~v 234 (398)
.+...++|||+|||.++++++|+++|++||.|.++++.++ +|||||+|.+.++|++|++ + ++..++|+.|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3457899999999999999999999999999999999874 8999999999999999998 7 889999999999
Q ss_pred CCCC
Q psy6490 235 KHAT 238 (398)
Q Consensus 235 ~~~~ 238 (398)
.+++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 8763
No 276
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=130.04 Aligned_cols=78 Identities=22% Similarity=0.383 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCE----EEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAV----TDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i----~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~ 235 (398)
+.++|||+|||+++|+++|+++|+.||.| .+|+|+.++ +|+++|||||+|.+.++|++||+.++..|+||.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 67899999999999999999999999975 689999985 8999999999999999999999999999999998887
Q ss_pred CCC
Q psy6490 236 HAT 238 (398)
Q Consensus 236 ~~~ 238 (398)
.+.
T Consensus 101 ~a~ 103 (123)
T 2dha_A 101 RST 103 (123)
T ss_dssp EEC
T ss_pred ECC
Confidence 654
No 277
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=8.3e-17 Score=122.42 Aligned_cols=79 Identities=19% Similarity=0.412 Sum_probs=69.7
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecC
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~ 326 (398)
...++|||+|||+++|+++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|+++++||+..|+|+.|+|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 345789999999999999999999999999987 56655664 9999999999888888899999999999999987
Q ss_pred chHH
Q psy6490 327 PKEA 330 (398)
Q Consensus 327 ~k~~ 330 (398)
.+..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6643
No 278
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.3e-16 Score=135.71 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=75.7
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|||+++++++|+++|+.||.|++|.|+.+. ++.++|||||+|++.++|++|+ +||+..|+|+.|+|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999997 8999999999999988777666 5999999999999999
Q ss_pred cCchH
Q psy6490 325 AQPKE 329 (398)
Q Consensus 325 a~~k~ 329 (398)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 98654
No 279
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=2.2e-16 Score=136.43 Aligned_cols=117 Identities=15% Similarity=0.240 Sum_probs=89.8
Q ss_pred ChHhHHHHHh-C--CCcccCCcccCCCCCCCCCCCc------cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEe
Q psy6490 212 EPETVEKVLK-V--PIHTLDGKKIDPKHATPKNRPK------IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVML 282 (398)
Q Consensus 212 ~~e~a~~al~-~--~~~~~~g~~l~v~~~~~~~~~~------~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~ 282 (398)
+.+....|++ . ....+.+....+........+. .....++|||+|||+++|+++|+++|+.||.|.+|+|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 4566677776 3 3344555544444442222111 12246789999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCchH
Q psy6490 283 MDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 283 ~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~k~ 329 (398)
++. ++.++|||||+|++.++|++|+++.+..|+|+.|+|.|+..-.
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 985 5899999999999999999998877789999999999987543
No 280
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=121.75 Aligned_cols=81 Identities=15% Similarity=0.297 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
......++|||+|||.++++++|+++|+.||.|. ++++.+ .++|||||+|.+.++|++|++ +++..++|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3344679999999999999999999999999997 666654 479999999999999999997 8999999999999
Q ss_pred CCCCCCC
Q psy6490 235 KHATPKN 241 (398)
Q Consensus 235 ~~~~~~~ 241 (398)
.++..+.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9987654
No 281
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=127.75 Aligned_cols=81 Identities=15% Similarity=0.269 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCccc
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLR----EYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKI 232 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~----~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l 232 (398)
..++++|||+||+.++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++ +++..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3467899999999999999876 6999999999988754 57889999999999999999997 99999999999
Q ss_pred CCCCCCCCC
Q psy6490 233 DPKHATPKN 241 (398)
Q Consensus 233 ~v~~~~~~~ 241 (398)
.|.++..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999987654
No 282
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=123.60 Aligned_cols=86 Identities=33% Similarity=0.456 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 155 TGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 155 ~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
.......++|||+|||.++++++|+++|+.|+ +++++.++.+++++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34455789999999999999999999999873 67888888899999999999999999999998 899999999999
Q ss_pred CCCCCCCCCC
Q psy6490 234 PKHATPKNRP 243 (398)
Q Consensus 234 v~~~~~~~~~ 243 (398)
|.++..+...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999876553
No 283
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=120.67 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccC--CcccCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLD--GKKIDP 234 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~--g~~l~v 234 (398)
....++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++ +++..++ |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 346799999999999999999999999999999999764 7899999999999999998 8999999 999999
Q ss_pred CCCCCCCC
Q psy6490 235 KHATPKNR 242 (398)
Q Consensus 235 ~~~~~~~~ 242 (398)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99876543
No 284
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=1.5e-16 Score=131.59 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=68.3
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCC--EEEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKN--KKVECK 323 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g--~~i~v~ 323 (398)
....+|||+||++.+|+++|+++|++||.|++|+|..+ .++|||||+|++.++|++++ .|||..|.| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34567999999999999999999999999999998654 25799999999977776555 699999965 999999
Q ss_pred ecCchH
Q psy6490 324 KAQPKE 329 (398)
Q Consensus 324 ~a~~k~ 329 (398)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999874
No 285
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=118.37 Aligned_cols=77 Identities=22% Similarity=0.521 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
...++|||+|||.++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 378999999999999999999999999999999996 6799999999999999997 8999999999999999
Q ss_pred CCCCCC
Q psy6490 238 TPKNRP 243 (398)
Q Consensus 238 ~~~~~~ 243 (398)
..+...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876653
No 286
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.8e-17 Score=136.48 Aligned_cols=125 Identities=22% Similarity=0.324 Sum_probs=106.0
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGA 187 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~ 187 (398)
..++++..+.+...+..+...+++....+....+........ ......++|||+|||.++++++|+++|+.||.
T Consensus 40 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 113 (166)
T 3md3_A 40 NVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPS 113 (166)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC------CCCCCCceEEECCCCCCCCHHHHHHHHhccCC
Confidence 456788999999999988877777666666555554432221 23346789999999999999999999999999
Q ss_pred EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 188 VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 188 i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
|.++++.++..+|.++|||||+|.+.++|.+|++ +++..++|+.|.|.++.
T Consensus 114 i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 114 YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999899999999999999999999998 89999999999998875
No 287
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=7.8e-17 Score=126.44 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=67.0
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
..++|||+|||+++++++|+++|++||.|.+|.|.+ ++|||||+|.+.++|++|+ .|||..|+|+.|+|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467899999999999999999999999999998864 4789999999987776655 699999999999999987
Q ss_pred ch
Q psy6490 327 PK 328 (398)
Q Consensus 327 ~k 328 (398)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 288
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=1.9e-16 Score=137.50 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=109.4
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCC------------CCCCCCCCCcEEEEcCCCCCCCH
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRS------------TPTGDDPTSAKLFVGGLSWQTSS 175 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~v~nLp~~~t~ 175 (398)
..+++|+.+.+...+..++ .+++....+....+........... .........++|||+|||.++++
T Consensus 50 ~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 128 (198)
T 2yh0_A 50 DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLND 128 (198)
T ss_dssp TTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCH
T ss_pred CCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCH
Confidence 3578899999999999998 7777766666666554432211110 11122357799999999999999
Q ss_pred HHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCCC
Q psy6490 176 EKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNR 242 (398)
Q Consensus 176 ~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~~ 242 (398)
++|+++|++||.|.++++.+++.+|.++|||||+|.+.++|.+|++ +++..++|+.|.|.++.++..
T Consensus 129 ~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 129 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999899999999999999999999998 899999999999999877654
No 289
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.9e-16 Score=122.08 Aligned_cols=74 Identities=15% Similarity=0.323 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
..++|||+|||.++++++|+++|++||.|.++++.+ ++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 568999999999999999999999999999999983 58999999999999999997 89999999999999987
Q ss_pred C
Q psy6490 239 P 239 (398)
Q Consensus 239 ~ 239 (398)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 290
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=1.2e-16 Score=135.53 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=103.4
Q ss_pred CCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCE
Q psy6490 109 SGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAV 188 (398)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i 188 (398)
.++++..+.+...+..++ .+++....+....+...... ......++|||+|||.++++++|+++|++||.|
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~--------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v 121 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY--------QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPL 121 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSC--------CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCE
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCccc--------CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCc
Confidence 578899999999999998 77777666666665543222 122357999999999999999999999999999
Q ss_pred EEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 189 TDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 189 ~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
.++++.+++.+|.++|||||+|.+.++|.+|++ +++..++|+.|.|.++
T Consensus 122 ~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 122 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 999999999899999999999999999999998 8999999999998876
No 291
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=2.1e-16 Score=133.37 Aligned_cols=96 Identities=20% Similarity=0.326 Sum_probs=82.6
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
..++|||+|||.++++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|++++ .+++..++|+.|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4578999999999999999999999999999999999889999999999999988887777 599999999999999998
Q ss_pred chHHHhhhhhcCCccccCCCC
Q psy6490 327 PKEAVQANLLVGKRVILGPLG 347 (398)
Q Consensus 327 ~k~~~~~~~~~~~~~~~~~~~ 347 (398)
++... ...+.++++++.
T Consensus 82 ~~~~~----~~~~~l~v~nl~ 98 (168)
T 1b7f_A 82 PGGES----IKDTNLYVTNLP 98 (168)
T ss_dssp CCSST----TTTCEEEEESCC
T ss_pred CCccc----CCCCCEEEeCCC
Confidence 76533 223445555543
No 292
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-16 Score=122.27 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCC-----ccc
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDG-----KKI 232 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g-----~~l 232 (398)
...++|||+|||.++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|++||+ +++..|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 36799999999999999999999999999999999876 799999999999999999 99999999 999
Q ss_pred CCCCCCCCCC
Q psy6490 233 DPKHATPKNR 242 (398)
Q Consensus 233 ~v~~~~~~~~ 242 (398)
.|.++..+..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9998877554
No 293
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=4e-17 Score=134.34 Aligned_cols=86 Identities=15% Similarity=0.272 Sum_probs=70.8
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETV--M---LMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKK 319 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~--i---~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~ 319 (398)
....++|||+|||+++|+++|+++|+.||.|..+. + ++...+++++|||||+|.+.++|.+|+ .|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34568899999999999999999999999988751 1 111247889999999999988777666 59999999999
Q ss_pred EEEEecCchHHH
Q psy6490 320 VECKKAQPKEAV 331 (398)
Q Consensus 320 i~v~~a~~k~~~ 331 (398)
|+|.|+++...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999775433
No 294
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=120.84 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=69.1
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEE-EeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETV-MLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~-i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
...++|||+|||+++++++|+++|++||.|.+|+ |++++.++ .|||+|.+.++|++++ .|||..|+|+.|+|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3568899999999999999999999999999994 87776543 4999999988776666 6999999999999999
Q ss_pred cCchH
Q psy6490 325 AQPKE 329 (398)
Q Consensus 325 a~~k~ 329 (398)
+.+++
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98874
No 295
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=1.4e-16 Score=134.34 Aligned_cols=85 Identities=15% Similarity=0.257 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
....++|||+|||.++++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+||+ +++..|+|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred CCCCCC
Q psy6490 237 ATPKNR 242 (398)
Q Consensus 237 ~~~~~~ 242 (398)
+..+..
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 876544
No 296
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.3e-17 Score=127.59 Aligned_cols=86 Identities=26% Similarity=0.271 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
...+++|||+|||.++|+++|+++|+.||.|.++.+..+..+++++|||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467999999999999999999999999998433332222278899999999999999999998 899999999999999
Q ss_pred CCCCCCC
Q psy6490 237 ATPKNRP 243 (398)
Q Consensus 237 ~~~~~~~ 243 (398)
+..+...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876553
No 297
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=2.3e-16 Score=118.39 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=66.1
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a~ 326 (398)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++++ .|||..++|+.|+|+|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 56899999999988776666 599999999999999986
Q ss_pred ch
Q psy6490 327 PK 328 (398)
Q Consensus 327 ~k 328 (398)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 298
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-17 Score=122.30 Aligned_cols=77 Identities=30% Similarity=0.611 Sum_probs=66.6
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCc
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~ 327 (398)
..++|||+|||.++++++|+++|++||.|.+|+|+++ ++|||||+|++.++|+++... ...++|+.|+|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4688999999999999999999999999999998765 689999999999888764332 3456999999999988
Q ss_pred hHH
Q psy6490 328 KEA 330 (398)
Q Consensus 328 k~~ 330 (398)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 299
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=1e-16 Score=122.35 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=67.8
Q ss_pred CccccceeecCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 246 GNRTKKIFVGGVSQ-DTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 246 ~~~~~~l~V~nLp~-~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
....++|||+|||. ++++++|+++|++||.|.+|++. +|||||+|++.++|++++ .||+..++|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34678999999998 99999999999999999999883 789999999988877766 599999999999999
Q ss_pred ecCchHHH
Q psy6490 324 KAQPKEAV 331 (398)
Q Consensus 324 ~a~~k~~~ 331 (398)
|+.++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99776543
No 300
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.65 E-value=2.3e-16 Score=130.83 Aligned_cols=121 Identities=17% Similarity=0.314 Sum_probs=90.7
Q ss_pred CCCChhhHhhhhCCC-ccccccceeeeecCCCC--------CCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcC
Q psy6490 115 TGDDPTSAKLFVGGL-NVVREAHQLVLVNGKSS--------GDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMF 185 (398)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~ 185 (398)
.+.+...+..+...+ ++....+ ...++.... ...............++|||+|||.++|+++|+++|+.|
T Consensus 19 e~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~ 97 (150)
T 2i2y_A 19 EAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYY 97 (150)
T ss_dssp ECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 366677776666555 4433333 333332211 111111223344578999999999999999999999999
Q ss_pred CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCCC
Q psy6490 186 GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKN 241 (398)
Q Consensus 186 G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~~ 241 (398)
|.|.+|+++++ ++|||||+|.+.++|.+|++ +++..++|+.|.|.++..+.
T Consensus 98 G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 98 GPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999887 58999999999999999998 89999999999999987653
No 301
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=119.07 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=67.5
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|| ++|+++|+++|++||.|.+|.|. .++|||||+|++.++|++++ +||+..|+|+.|+|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 99999999999999999999884 45899999999987776666 7999999999999999
Q ss_pred cCchHH
Q psy6490 325 AQPKEA 330 (398)
Q Consensus 325 a~~k~~ 330 (398)
+.++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987653
No 302
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-16 Score=124.30 Aligned_cols=79 Identities=10% Similarity=0.219 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-C--CCcccCCcccC
Q psy6490 158 DPTSAKLFVGGLSWQ-TSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-V--PIHTLDGKKID 233 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~-~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~--~~~~~~g~~l~ 233 (398)
..++++|||+|||++ +++++|+++|+.||.|.+|+|++ +||||||+|.+.++|++|++ + ++..++|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 447899999999998 99999999999999999999975 48999999999999999998 4 34569999999
Q ss_pred CCCCCCCCC
Q psy6490 234 PKHATPKNR 242 (398)
Q Consensus 234 v~~~~~~~~ 242 (398)
|.++..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999876554
No 303
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=115.91 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~ 239 (398)
..++|||+|||.++++++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|++|+++++..++|+.|.|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 56899999999999999999999999999987 55655654 99999999999999999999999999999998875
Q ss_pred CCC
Q psy6490 240 KNR 242 (398)
Q Consensus 240 ~~~ 242 (398)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 304
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-17 Score=132.33 Aligned_cols=85 Identities=20% Similarity=0.405 Sum_probs=79.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTD--------VLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLD 228 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~ 228 (398)
..+.++|||+|||.++++++|+++|++||.|.+ |+++.++.+++++|||||+|.+.++|++|++ +++..++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 347799999999999999999999999999999 9999998899999999999999999999998 8999999
Q ss_pred CcccCCCCCCCCCC
Q psy6490 229 GKKIDPKHATPKNR 242 (398)
Q Consensus 229 g~~l~v~~~~~~~~ 242 (398)
|+.|.|.++..+..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999887654
No 305
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=8.5e-16 Score=122.38 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=67.4
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHH-HHCCceeCC--EEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGF-GFVTFENEEVVDHIC-EIHFHMIKN--KKVEC 322 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~-afV~F~~~eaa~a~~-~l~~~~i~g--~~i~v 322 (398)
....+|||+||++.+|+++|+++|++||.|.+|+|+.+. +|| |||+|++.++|++|+ .|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 345578999999999999999999999999999887652 677 999999977665554 799999988 99999
Q ss_pred EecCchH
Q psy6490 323 KKAQPKE 329 (398)
Q Consensus 323 ~~a~~k~ 329 (398)
.|++++.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 306
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=121.96 Aligned_cols=79 Identities=18% Similarity=0.473 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
...++|||+|||.++++++|+++|+.||.|.+|+++++ +|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 36789999999999999999999999999999999886 7899999999999999996 8999999999999999
Q ss_pred CCCCCC
Q psy6490 238 TPKNRP 243 (398)
Q Consensus 238 ~~~~~~ 243 (398)
..+...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 876553
No 307
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=5.7e-16 Score=136.40 Aligned_cols=102 Identities=19% Similarity=0.365 Sum_probs=83.1
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEEEecC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v~~a~ 326 (398)
..++|||+|||.++|+++|+++|+.||.|++|+|+++..+++++|||||+|.+.++|+++++ ||+..|+|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46789999999999999999999999999999999998899999999999999888877775 99999999999999988
Q ss_pred chHHHhhh-------hhcCCccccCCCCCC
Q psy6490 327 PKEAVQAN-------LLVGKRVILGPLGLR 349 (398)
Q Consensus 327 ~k~~~~~~-------~~~~~~~~~~~~~~~ 349 (398)
.+...... ....+.++++++...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 136 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQD 136 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTT
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCc
Confidence 76543321 133456677665443
No 308
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4e-16 Score=121.46 Aligned_cols=77 Identities=13% Similarity=0.263 Sum_probs=66.0
Q ss_pred ccccceee--cCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCcee-----CCE
Q psy6490 247 NRTKKIFV--GGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMI-----KNK 318 (398)
Q Consensus 247 ~~~~~l~V--~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i-----~g~ 318 (398)
.++++||| +||++++++++|+++|++||.|++|.|..+ ||||||+|++.++|++|+ +|||+.| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45678999 779999999999999999999999887542 799999999977776555 6999998 799
Q ss_pred EEEEEecCchH
Q psy6490 319 KVECKKAQPKE 329 (398)
Q Consensus 319 ~i~v~~a~~k~ 329 (398)
.|.|.++....
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999987543
No 309
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.9e-15 Score=119.87 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=64.9
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHH-HHCCceeCC--EEEEEE
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGF-GFVTFENEEVVDHIC-EIHFHMIKN--KKVECK 323 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~-afV~F~~~eaa~a~~-~l~~~~i~g--~~i~v~ 323 (398)
....|||+||++.+|+++|+++|++||.|++|+|+.. +|| |||+|++.++|.+|+ .|||..|.| +.|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3445789999999999999999999999999998642 376 999999977665555 799999987 699999
Q ss_pred ecCchH
Q psy6490 324 KAQPKE 329 (398)
Q Consensus 324 ~a~~k~ 329 (398)
+++++.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998775
No 310
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=6.7e-16 Score=115.49 Aligned_cols=72 Identities=14% Similarity=0.384 Sum_probs=65.5
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCcee
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQF----G-------KVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMI 315 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~----G-------~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i 315 (398)
...++|||+|||.++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|++++.|||..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 457899999999999999999999999 8 8999998755 7999999999888877779999999
Q ss_pred CCEEEEEEe
Q psy6490 316 KNKKVECKK 324 (398)
Q Consensus 316 ~g~~i~v~~ 324 (398)
+|+.|+|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 311
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-15 Score=116.59 Aligned_cols=77 Identities=29% Similarity=0.450 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMF--GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~--G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
....++|||+|||.++++++|+++|++| |.|.+|++. +|||||+|.+.++|++|++ +++..++|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3477999999999999999999999999 999998873 6799999999999999999 9999999999999
Q ss_pred CCCCCCCC
Q psy6490 235 KHATPKNR 242 (398)
Q Consensus 235 ~~~~~~~~ 242 (398)
.++..+..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 312
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=1.5e-16 Score=124.12 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
..++|||+|||+++++++|+++|++|| .|..+++..+ .++|||||+|.+.++|++|++ +++..++|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 568999999999999999999999999 8999988643 379999999999999999997 9999999999999887
Q ss_pred CCC
Q psy6490 238 TPK 240 (398)
Q Consensus 238 ~~~ 240 (398)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 643
No 313
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=1.7e-15 Score=117.09 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=70.6
Q ss_pred ccccceeecCCCC-----CCCHHHHHHHHhhcCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHH-HHHHCCceeCCEE
Q psy6490 247 NRTKKIFVGGVSQ-----DTSAEEVKAYFSQFGKVEETVMLMDQQT-KRHRGFGFVTFENEEVVDH-ICEIHFHMIKNKK 319 (398)
Q Consensus 247 ~~~~~l~V~nLp~-----~~tee~L~~~F~~~G~i~~v~i~~~~~~-~~~kg~afV~F~~~eaa~a-~~~l~~~~i~g~~ 319 (398)
..+++|+|+||.. +.++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+ +.+|||..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578899999953 2378999999999999999999998654 6899999999999776655 5579999999999
Q ss_pred EEEEecCchHH
Q psy6490 320 VECKKAQPKEA 330 (398)
Q Consensus 320 i~v~~a~~k~~ 330 (398)
|+|.++....-
T Consensus 86 i~v~~a~~~~f 96 (105)
T 2pe8_A 86 VKACFYNLDKF 96 (105)
T ss_dssp CEEEECCHHHH
T ss_pred EEEEEcCHHHh
Confidence 99999986443
No 314
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=4.2e-16 Score=121.55 Aligned_cols=79 Identities=24% Similarity=0.497 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 156 ~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
..+...++|||+|||.++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++ +++..++|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344578999999999999999999999999999999997 7899999999999999998 8999999999999
Q ss_pred CCCCCCCC
Q psy6490 235 KHATPKNR 242 (398)
Q Consensus 235 ~~~~~~~~ 242 (398)
.++.....
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99876543
No 315
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=6.1e-16 Score=130.45 Aligned_cols=84 Identities=32% Similarity=0.718 Sum_probs=77.2
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCc
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQP 327 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~ 327 (398)
..++|||+|||.++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|+++++ ++..++|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 46789999999999999999999999999999999999999999999999999998888887 47899999999999988
Q ss_pred hHHHh
Q psy6490 328 KEAVQ 332 (398)
Q Consensus 328 k~~~~ 332 (398)
+....
T Consensus 81 ~~~~~ 85 (167)
T 2cjk_A 81 RDEQD 85 (167)
T ss_dssp HHHHH
T ss_pred hhhcc
Confidence 76543
No 316
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=6.5e-16 Score=119.53 Aligned_cols=77 Identities=26% Similarity=0.455 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
...++|||+|||.++|+++|+++|++||.|.+|+++ ++||||+|.+.++|++|++ +++..|+|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 367999999999999999999999999999999986 4599999999999999998 8999999999999998
Q ss_pred CCCCCC
Q psy6490 238 TPKNRP 243 (398)
Q Consensus 238 ~~~~~~ 243 (398)
..+...
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 776543
No 317
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=6.9e-16 Score=117.92 Aligned_cols=76 Identities=26% Similarity=0.494 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 157 DDPTSAKLFVGGLSW-QTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
....+++|||+|||. ++++++|+++|+.||.|.++++ ++|||||+|.+.++|.+|++ +++..++|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344789999999998 9999999999999999999998 37899999999999999998 8999999999999
Q ss_pred CCCCCC
Q psy6490 235 KHATPK 240 (398)
Q Consensus 235 ~~~~~~ 240 (398)
.++..+
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 988754
No 318
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=8.8e-16 Score=130.64 Aligned_cols=83 Identities=27% Similarity=0.379 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++++++|+++|+.||.|++|.|..++ ++.++|||||+|.+.++|++|++ +++..|+|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467999999999999999999999999999999999998 89999999999999999999998 99999999999998
Q ss_pred CCCCC
Q psy6490 236 HATPK 240 (398)
Q Consensus 236 ~~~~~ 240 (398)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 87653
No 319
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=2.3e-16 Score=120.69 Aligned_cols=81 Identities=19% Similarity=0.408 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLR----EYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKID 233 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~----~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~ 233 (398)
.++++|||+|||.++++++|+ ++|++||.|.+|++.+ ++.++|||||+|.+.++|.+|++ +++..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 377999999999999999999 9999999999999874 56789999999999999999998 899999999999
Q ss_pred CCCCCCCCC
Q psy6490 234 PKHATPKNR 242 (398)
Q Consensus 234 v~~~~~~~~ 242 (398)
|.++..+..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999876543
No 320
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=3.3e-16 Score=119.53 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
.....++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++ +++..++|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34478999999999999999999999999988766 2367899999999999999999999 89999999999999
Q ss_pred CCCCCCC
Q psy6490 236 HATPKNR 242 (398)
Q Consensus 236 ~~~~~~~ 242 (398)
++..+..
T Consensus 87 ~a~~~~~ 93 (96)
T 1fjc_A 87 YTGEKGG 93 (96)
T ss_dssp ECSSSCC
T ss_pred EcCCCCC
Confidence 9876543
No 321
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=5.2e-16 Score=116.53 Aligned_cols=78 Identities=29% Similarity=0.526 Sum_probs=63.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHA 237 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~ 237 (398)
.....+|||+|||+++|+++|+++|++||.|.+|+++++ +||||||+|.+.++|+++... ...++|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEEc
Confidence 347899999999999999999999999999999999886 699999999999999964332 44467999999888
Q ss_pred CCCC
Q psy6490 238 TPKN 241 (398)
Q Consensus 238 ~~~~ 241 (398)
.++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7654
No 322
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=115.47 Aligned_cols=78 Identities=24% Similarity=0.459 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
....++|||+|||.++++++|+++|++||.|.+|++++ +||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34789999999999999999999999999999999963 499999999999999997 899999999999999
Q ss_pred CCCCCCC
Q psy6490 237 ATPKNRP 243 (398)
Q Consensus 237 ~~~~~~~ 243 (398)
+..+...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9876543
No 323
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=9.7e-16 Score=120.82 Aligned_cols=78 Identities=23% Similarity=0.456 Sum_probs=66.0
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHH-HCCceeCCEEEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQT---KRHRGFGFVTFENEEVVDHICE-IHFHMIKNKKVEC 322 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~---~~~kg~afV~F~~~eaa~a~~~-l~~~~i~g~~i~v 322 (398)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|++.++|++|++ | ..++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEEe
Confidence 3568899999999999999999999999999 888888777 7999999999999888877664 5 3477777777
Q ss_pred EecCc
Q psy6490 323 KKAQP 327 (398)
Q Consensus 323 ~~a~~ 327 (398)
..+..
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 66544
No 324
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.7e-15 Score=113.89 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
....++|||+|| ++|+++|+++|++||.|.+|++. .++|||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346799999996 99999999999999999999984 368999999999999999996 899999999999999
Q ss_pred CCCCCCC
Q psy6490 237 ATPKNRP 243 (398)
Q Consensus 237 ~~~~~~~ 243 (398)
+..+...
T Consensus 84 a~~~~~~ 90 (97)
T 1x5p_A 84 ARKQPML 90 (97)
T ss_dssp CSSCCCC
T ss_pred CCCCCCC
Confidence 9776543
No 325
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=116.60 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEE-EEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDV-LIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~-~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
...++|||+|||.++++++|+++|+.||.|.+| .++.++.++ .|||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999 488876443 49999999999999998 899999999999999
Q ss_pred CCCCC
Q psy6490 237 ATPKN 241 (398)
Q Consensus 237 ~~~~~ 241 (398)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 88763
No 326
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=2.1e-15 Score=124.70 Aligned_cols=79 Identities=11% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCC--cccCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDG--KKIDPKH 236 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g--~~l~v~~ 236 (398)
...+|||+||++++|+++|+++|++||+|++|++..++ ++|||||+|.+.++|++|++ +++..|.| ++|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 56789999999999999999999999999999997553 58899999999999999998 99999965 9999999
Q ss_pred CCCCCC
Q psy6490 237 ATPKNR 242 (398)
Q Consensus 237 ~~~~~~ 242 (398)
++.+..
T Consensus 121 Ak~~~l 126 (164)
T 1sjr_A 121 SKLTSL 126 (164)
T ss_dssp CSSSSC
T ss_pred ecCCcc
Confidence 887643
No 327
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=2e-15 Score=118.21 Aligned_cols=76 Identities=16% Similarity=0.397 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 159 PTSAKLFVGGLSWQ-TSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 159 ~~~~~l~v~nLp~~-~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
...++|||+|||.+ +++++|+++|++||.|.+|++ ++|||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35689999999999 999999999999999999998 48899999999999999996 899999999999999
Q ss_pred CCCCCC
Q psy6490 237 ATPKNR 242 (398)
Q Consensus 237 ~~~~~~ 242 (398)
+.....
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 875443
No 328
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=7e-16 Score=121.80 Aligned_cols=75 Identities=19% Similarity=0.322 Sum_probs=63.3
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEE-----EE
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKK-----VE 321 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~-----i~ 321 (398)
..++|||+|||+++++++|+++|++||.|++|.|+.+ |||||+|++.++|++|+ .||+..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4678999999999999999999999999999999766 89999999987776666 59999999998 77
Q ss_pred EEecCchH
Q psy6490 322 CKKAQPKE 329 (398)
Q Consensus 322 v~~a~~k~ 329 (398)
|..+.++.
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 77776644
No 329
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=9.5e-16 Score=116.98 Aligned_cols=76 Identities=29% Similarity=0.545 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 159 PTSAKLFVGGLSW-QTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 159 ~~~~~l~v~nLp~-~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
.+.++|||+|||. ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++ +++..+.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4789999999998 99999999999999999999983 7899999999999999998 899999999999999
Q ss_pred CCCCCC
Q psy6490 237 ATPKNR 242 (398)
Q Consensus 237 ~~~~~~ 242 (398)
+..+..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 876554
No 330
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=114.57 Aligned_cols=77 Identities=22% Similarity=0.410 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
....++|||+|||.++|+++|+++|++||.|.+|++++ +||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34789999999999999999999999999999999974 499999999999999998 899999999999999
Q ss_pred CCCCCC
Q psy6490 237 ATPKNR 242 (398)
Q Consensus 237 ~~~~~~ 242 (398)
+.....
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 887644
No 331
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=5.8e-16 Score=120.95 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=69.5
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcC----hHh----HHHHHh---CCCcc
Q psy6490 162 AKLFVGGL----SWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAE----PET----VEKVLK---VPIHT 226 (398)
Q Consensus 162 ~~l~v~nL----p~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~----~e~----a~~al~---~~~~~ 226 (398)
..|||+|| ++++++++|+++|+.||+|.+|+++.|+.||+++|||||+|.+ +++ |.+|++ +++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 788876 59999
Q ss_pred cCCcccCCCCCCC
Q psy6490 227 LDGKKIDPKHATP 239 (398)
Q Consensus 227 ~~g~~l~v~~~~~ 239 (398)
++|++|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999986553
No 332
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.1e-16 Score=121.74 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
..++|||+|||.++++++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++ +++..++|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 568999999999999999999999999999999875 48899999999999999998 89999999999999876
Q ss_pred CC
Q psy6490 239 PK 240 (398)
Q Consensus 239 ~~ 240 (398)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 333
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=112.29 Aligned_cols=72 Identities=10% Similarity=0.173 Sum_probs=61.7
Q ss_pred ccc-eeecCCCCCCCHHH----HHHHHhhc-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEE
Q psy6490 249 TKK-IFVGGVSQDTSAEE----VKAYFSQF-GKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVE 321 (398)
Q Consensus 249 ~~~-l~V~nLp~~~tee~----L~~~F~~~-G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~ 321 (398)
+.+ |||+|||+++++++ |+++|++| |.|.+| ++ |+|||+|.+.++|.+|+ +|+|..|.||.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999988 55899999 599987 33 99999999988776655 7999999999999
Q ss_pred EEecCchHH
Q psy6490 322 CKKAQPKEA 330 (398)
Q Consensus 322 v~~a~~k~~ 330 (398)
|.+|+.+.+
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999987654
No 334
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=1.7e-15 Score=120.46 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=67.7
Q ss_pred CccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEe
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKK 324 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~ 324 (398)
....++|||+|| ++|+++|+++|++||.|.+|.+. .++|||||+|++.++|++|+ +|||..|+|+.|+|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999996 79999999999999999999985 45899999999988776666 7999999999999999
Q ss_pred cCchHHH
Q psy6490 325 AQPKEAV 331 (398)
Q Consensus 325 a~~k~~~ 331 (398)
+.++...
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9877543
No 335
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.6e-16 Score=116.22 Aligned_cols=77 Identities=19% Similarity=0.413 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCC-cccCCcccCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGA-VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPI-HTLDGKKIDPK 235 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~-i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~-~~~~g~~l~v~ 235 (398)
...++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++ +++ ..++|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 36789999999999999999999999999 6666552 48899999999999999998 898 89999999999
Q ss_pred CCCCCCC
Q psy6490 236 HATPKNR 242 (398)
Q Consensus 236 ~~~~~~~ 242 (398)
++..+..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9887654
No 336
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=118.84 Aligned_cols=76 Identities=25% Similarity=0.384 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCC---CCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPIT---QRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKH 236 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~---~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~ 236 (398)
..++|||+|||.++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++||+.. ..++|+.|.+..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEecc
Confidence 679999999999999999999999999999 888888777 799999999999999999999832 246777776654
Q ss_pred C
Q psy6490 237 A 237 (398)
Q Consensus 237 ~ 237 (398)
.
T Consensus 85 ~ 85 (114)
T 2dnl_A 85 S 85 (114)
T ss_dssp C
T ss_pred C
Confidence 3
No 337
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=2e-15 Score=112.86 Aligned_cols=71 Identities=20% Similarity=0.492 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMF----G-------AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLD 228 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~ 228 (398)
..++|||+|||.++++++|+++|++| | .|.++++.++ +|||||+|.+.++|++|+.+++..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 67999999999999999999999999 8 9999999765 89999999999999999999999999
Q ss_pred CcccCCCC
Q psy6490 229 GKKIDPKH 236 (398)
Q Consensus 229 g~~l~v~~ 236 (398)
|+.|.|++
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99998764
No 338
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-15 Score=114.08 Aligned_cols=78 Identities=31% Similarity=0.539 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~ 239 (398)
.+++|||+|||.++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++++.. ...++|+.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 6799999999999999999999999999999999876 699999999999999876554 4567999999999887
Q ss_pred CCCC
Q psy6490 240 KNRP 243 (398)
Q Consensus 240 ~~~~ 243 (398)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6553
No 339
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=3.9e-15 Score=129.87 Aligned_cols=76 Identities=16% Similarity=0.302 Sum_probs=68.2
Q ss_pred cccceeecCCC-CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEEec
Q psy6490 248 RTKKIFVGGVS-QDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECKKA 325 (398)
Q Consensus 248 ~~~~l~V~nLp-~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~~a 325 (398)
.+++|||+||+ +++|+++|+++|+.||.|.+|+|++++ +|||||+|++.++|++|+ .|||..|.|+.|+|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46789999999 899999999999999999999998763 799999999987776665 69999999999999998
Q ss_pred Cch
Q psy6490 326 QPK 328 (398)
Q Consensus 326 ~~k 328 (398)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 340
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.9e-15 Score=108.28 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=64.8
Q ss_pred CCcE-EEEcCCCCCCCHHH----HHHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCccc
Q psy6490 160 TSAK-LFVGGLSWQTSSEK----LREYFGMFG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKI 232 (398)
Q Consensus 160 ~~~~-l~v~nLp~~~t~~~----L~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l 232 (398)
++.+ |||+|||+++++++ |+++|++|| +|.+| ++ |+|||+|.+.++|.+|++ +++..+.||.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 558999994 99998 33 999999999999999998 99999999999
Q ss_pred CCCCCCCCCC
Q psy6490 233 DPKHATPKNR 242 (398)
Q Consensus 233 ~v~~~~~~~~ 242 (398)
+|.++..+..
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999987655
No 341
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=6e-15 Score=130.24 Aligned_cols=106 Identities=14% Similarity=0.260 Sum_probs=76.5
Q ss_pred HhCCCcccCCcccCCCCCCCCC-CCccCccccceeecCCCCCC---------CHHHHHHHHhhcCCeeEEEEeecCCCCC
Q psy6490 220 LKVPIHTLDGKKIDPKHATPKN-RPKIGNRTKKIFVGGVSQDT---------SAEEVKAYFSQFGKVEETVMLMDQQTKR 289 (398)
Q Consensus 220 l~~~~~~~~g~~l~v~~~~~~~-~~~~~~~~~~l~V~nLp~~~---------tee~L~~~F~~~G~i~~v~i~~~~~~~~ 289 (398)
+..+...+.|+.....+..... ........++|||+||+.++ +|++|+++|++||.|++|+|+.+
T Consensus 104 ~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----- 178 (240)
T 3u1l_A 104 LRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----- 178 (240)
T ss_dssp HHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----
T ss_pred ccccCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----
Confidence 3334444556655444333221 12234567899999999998 79999999999999999999864
Q ss_pred cceEEEEEeCCHHHHHHHH-HHCCcee------------CCEEEEEEecCchHHH
Q psy6490 290 HRGFGFVTFENEEVVDHIC-EIHFHMI------------KNKKVECKKAQPKEAV 331 (398)
Q Consensus 290 ~kg~afV~F~~~eaa~a~~-~l~~~~i------------~g~~i~v~~a~~k~~~ 331 (398)
||||||+|.+.++|+.|+ .|+|..| .|+.|.|+||+.+...
T Consensus 179 -kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 179 -KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp -GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred -CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 899999999988877666 6999999 8999999999876543
No 342
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=1.7e-15 Score=113.52 Aligned_cols=75 Identities=12% Similarity=0.259 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHAT 238 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~ 238 (398)
..++|||+|||.++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++ +++..++|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56899999999999999999999999 99999884 479999999999999999998 89999999999999886
Q ss_pred CCC
Q psy6490 239 PKN 241 (398)
Q Consensus 239 ~~~ 241 (398)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 343
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.1e-15 Score=117.35 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=63.4
Q ss_pred CCcEEEE--cCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCccc-----CCcc
Q psy6490 160 TSAKLFV--GGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTL-----DGKK 231 (398)
Q Consensus 160 ~~~~l~v--~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~-----~g~~ 231 (398)
++++||| +||+.++++++|+++|++||.|.+|.+.. .||||||+|.+.++|++|++ +++..+ .|+.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 6789999 77999999999999999999999998864 38999999999999999998 888876 5666
Q ss_pred cCCCCCC
Q psy6490 232 IDPKHAT 238 (398)
Q Consensus 232 l~v~~~~ 238 (398)
|.|.++.
T Consensus 98 l~v~~a~ 104 (114)
T 2cq2_A 98 LYLNFVE 104 (114)
T ss_dssp CEEEEES
T ss_pred EEEEecc
Confidence 7665554
No 344
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=2e-15 Score=128.33 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=101.0
Q ss_pred CCCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC
Q psy6490 108 DSGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGA 187 (398)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~ 187 (398)
..++++..+.+...+..++ .+++....+....+....... .......++|||+|||.++++++|+++|+.||.
T Consensus 53 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~ 125 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRD------SKKVRAARTLLAKNLSFNITEDELKEVFEDALE 125 (175)
T ss_dssp TTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSS------CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSE
T ss_pred cccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCcc------ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCe
Confidence 4578889999999999999 488777777766665544322 123347799999999999999999999999998
Q ss_pred EEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCCCCC
Q psy6490 188 VTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPK 240 (398)
Q Consensus 188 i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~~~~ 240 (398)
|..+ ..++.++|||||+|.+.++|.+|++ +++..++|+.|.|.++.++
T Consensus 126 v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 126 IRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 8766 4578899999999999999999999 8999999999999988754
No 345
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=5.5e-15 Score=125.45 Aligned_cols=98 Identities=22% Similarity=0.403 Sum_probs=80.0
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHH-HHCCceeC---CEEEE
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTK--RHRGFGFVTFENEEVVDHIC-EIHFHMIK---NKKVE 321 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~--~~kg~afV~F~~~eaa~a~~-~l~~~~i~---g~~i~ 321 (398)
..++|||+|||.++|+++|+++|++||.|.+|+++++..++ +++|||||+|.+.++|++++ .||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46789999999999999999999999999999999998876 89999999999988887766 59998876 68888
Q ss_pred EEecCchHHHhhhhhcCCccccCCCCC
Q psy6490 322 CKKAQPKEAVQANLLVGKRVILGPLGL 348 (398)
Q Consensus 322 v~~a~~k~~~~~~~~~~~~~~~~~~~~ 348 (398)
+.++..+.... ...+.++++++..
T Consensus 82 ~~~~~~~~~~~---~~~~~l~v~nl~~ 105 (175)
T 3nmr_A 82 MKPADSEKNNA---VEDRKLFIGMISK 105 (175)
T ss_dssp EEECGGGCCSC---GGGSEEEEESCCT
T ss_pred Ecccccccccc---CCCCeEEEcCCCC
Confidence 88876554321 2345566666543
No 346
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=2.6e-14 Score=113.28 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccE-EEEEEcChHhHHHHHh-CCCcccCC--cccCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGF-GFITFAEPETVEKVLK-VPIHTLDG--KKIDPK 235 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~-afV~f~~~e~a~~al~-~~~~~~~g--~~l~v~ 235 (398)
....|||+||++.+|+++|+++|++||.|.+|++... .|| |||+|.+.++|.+|++ +++..|.| +.|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3455789999999999999999999999999999753 376 9999999999999998 89999987 589998
Q ss_pred CCCCCC
Q psy6490 236 HATPKN 241 (398)
Q Consensus 236 ~~~~~~ 241 (398)
++..+.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 887664
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=3.7e-15 Score=117.63 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=63.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
..++|||+|||.++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|++||+ +++..|+|+.|.+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 5689999999999999999999999999999999765 899999999999999999 8999999999655443
No 348
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.56 E-value=6.5e-15 Score=117.29 Aligned_cols=78 Identities=13% Similarity=0.305 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccE-EEEEEcChHhHHHHHh-CCCcccCC--cccCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGF-GFITFAEPETVEKVLK-VPIHTLDG--KKIDPK 235 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~-afV~f~~~e~a~~al~-~~~~~~~g--~~l~v~ 235 (398)
.-..|||+||++.+|+++|+++|++||.|.+|++..+ .+|| |||+|.+.++|++|++ +++..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 5578889999999999999999999999999998875 3688 9999999999999998 89999988 889999
Q ss_pred CCCCCCC
Q psy6490 236 HATPKNR 242 (398)
Q Consensus 236 ~~~~~~~ 242 (398)
+++....
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9876643
No 349
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=5.4e-16 Score=127.53 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEE--------EEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDV--------LIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDG 229 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~--------~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g 229 (398)
..+++|||+|||.++|+++|+++|+.||.|.++ ++. .+++++|||||+|.+.++|.+|++ +++..++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 367999999999999999999999999988764 332 368899999999999999999999 89999999
Q ss_pred cccCCCCCCCCCC
Q psy6490 230 KKIDPKHATPKNR 242 (398)
Q Consensus 230 ~~l~v~~~~~~~~ 242 (398)
+.|.|.++.....
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999876543
No 350
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=113.45 Aligned_cols=82 Identities=12% Similarity=0.265 Sum_probs=67.7
Q ss_pred cCccccceeecCCCCCCC-----------HHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCC
Q psy6490 245 IGNRTKKIFVGGVSQDTS-----------AEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHF 312 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~t-----------ee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~ 312 (398)
....+++|+|+||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|+ .|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445688999999944432 6899999999999999965 553 37999999999987776655 7999
Q ss_pred ceeCCEEEEEEecCchHH
Q psy6490 313 HMIKNKKVECKKAQPKEA 330 (398)
Q Consensus 313 ~~i~g~~i~v~~a~~k~~ 330 (398)
..|+||.|+|.|+.++..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999987654
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=9.2e-15 Score=126.15 Aligned_cols=80 Identities=13% Similarity=0.264 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCCCCCCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP 239 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~ 239 (398)
..++|||+|||.++|+++|+++|+.||.|.+|++.++. ++.++|||||+|.+.++|++|++..+..++|+.|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 46899999999999999999999999999999999987 58899999999999999999999767799999999987765
Q ss_pred C
Q psy6490 240 K 240 (398)
Q Consensus 240 ~ 240 (398)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 352
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=1.4e-14 Score=133.00 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=72.9
Q ss_pred CccccceeecCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEE
Q psy6490 246 GNRTKKIFVGGVSQDTSAEEVK----AYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKV 320 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~~tee~L~----~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i 320 (398)
....++|||+|||+++|+++|+ ++|+.||.|++|++++ +++++|||||+|.+.++|++++ .|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999977 8999999999998875 6788999999999988777766 799999999999
Q ss_pred EEEecCchHH
Q psy6490 321 ECKKAQPKEA 330 (398)
Q Consensus 321 ~v~~a~~k~~ 330 (398)
+|.|++.+..
T Consensus 83 ~v~~a~~~~~ 92 (282)
T 3pgw_A 83 RIQYAKTDSD 92 (282)
T ss_pred EEEEeccCcc
Confidence 9999977553
No 353
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.54 E-value=9.3e-15 Score=141.66 Aligned_cols=82 Identities=20% Similarity=0.447 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCCC
Q psy6490 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHA 237 (398)
Q Consensus 159 ~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~ 237 (398)
...++|||+|||.++|+++|+++|+.||.|+.|.|+.++.++.++|||||+|.+.++|.+||+ +++..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 367899999999999999999999999999999999999999999999999999999999996 8999999999999988
Q ss_pred CCC
Q psy6490 238 TPK 240 (398)
Q Consensus 238 ~~~ 240 (398)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 354
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.53 E-value=2.8e-14 Score=110.31 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=69.1
Q ss_pred cccceeecCC--CCCCC--------HHHHHHHHhhcCCeeEEEEeecCCC--CCcceEEEEEeCCHHHHHHH-HHHCCce
Q psy6490 248 RTKKIFVGGV--SQDTS--------AEEVKAYFSQFGKVEETVMLMDQQT--KRHRGFGFVTFENEEVVDHI-CEIHFHM 314 (398)
Q Consensus 248 ~~~~l~V~nL--p~~~t--------ee~L~~~F~~~G~i~~v~i~~~~~~--~~~kg~afV~F~~~eaa~a~-~~l~~~~ 314 (398)
++++|.|.|+ +.++. ++||++.|++||.|++|+|.++..+ +.++|||||+|++.++|.+| .+|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 43443 4799999999999999999988755 36899999999997766555 5899999
Q ss_pred eCCEEEEEEecCchHH
Q psy6490 315 IKNKKVECKKAQPKEA 330 (398)
Q Consensus 315 i~g~~i~v~~a~~k~~ 330 (398)
++||.|+|.++....-
T Consensus 84 f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 84 FANRVVVTKYCDPDSY 99 (105)
T ss_dssp ETTEECEEEEECHHHH
T ss_pred eCCCEEEEEEeCHHHH
Confidence 9999999999876543
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=2.4e-14 Score=110.58 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHHhcCCCEEEEEEeeCCCC-CCcccEEEEEEcChHhHHHHHh-CCCcccCCccc
Q psy6490 160 TSAKLFVGGLSW-----QTSSEKLREYFGMFGAVTDVLIMKDPIT-QRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKI 232 (398)
Q Consensus 160 ~~~~l~v~nLp~-----~~t~~~L~~~f~~~G~i~~~~~~~~~~~-~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l 232 (398)
.+++|+|+||-. +-++++|+++|++||.|.+|+|.+++.+ ++++||+||+|.+.++|.+|++ +++..++||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 679999999963 2378999999999999999999998654 6899999999999999999998 99999999999
Q ss_pred CCCCCCC
Q psy6490 233 DPKHATP 239 (398)
Q Consensus 233 ~v~~~~~ 239 (398)
.+.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9988753
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=1.8e-14 Score=114.64 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~ 236 (398)
....++|||+|| ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|++|++ +++..++|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 347899999996 79999999999999999999986 368999999999999999996 899999999999999
Q ss_pred CCCCCC
Q psy6490 237 ATPKNR 242 (398)
Q Consensus 237 ~~~~~~ 242 (398)
+..+..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 886654
No 357
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=6.2e-14 Score=127.23 Aligned_cols=77 Identities=25% Similarity=0.500 Sum_probs=69.1
Q ss_pred cCccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEEEEE
Q psy6490 245 IGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVECK 323 (398)
Q Consensus 245 ~~~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i~v~ 323 (398)
.....++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+++ .+||..|+|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3456788999999999999999999999999999998654 799999999988887776 599999999999999
Q ss_pred ecCc
Q psy6490 324 KAQP 327 (398)
Q Consensus 324 ~a~~ 327 (398)
|+.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9875
No 358
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=5.5e-14 Score=110.78 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=68.4
Q ss_pred cccceeecCCC--CCC---CHHHHHHHHhhcCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHH-HHHHCCceeCC
Q psy6490 248 RTKKIFVGGVS--QDT---SAEEVKAYFSQFGKVEETVMLMDQQ----TKRHRGFGFVTFENEEVVDH-ICEIHFHMIKN 317 (398)
Q Consensus 248 ~~~~l~V~nLp--~~~---tee~L~~~F~~~G~i~~v~i~~~~~----~~~~kg~afV~F~~~eaa~a-~~~l~~~~i~g 317 (398)
++++|+|+|+- .++ .++||++.|++||.|.+|+|+++.. +++++||+||+|.+.++|.+ +..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57889999983 222 3689999999999999999999864 45788999999999776655 55799999999
Q ss_pred EEEEEEecCchH
Q psy6490 318 KKVECKKAQPKE 329 (398)
Q Consensus 318 ~~i~v~~a~~k~ 329 (398)
|.|+|.++....
T Consensus 99 R~i~v~~~~~~~ 110 (118)
T 3ue2_A 99 RKVVAEVYDQER 110 (118)
T ss_dssp EECEEEEECHHH
T ss_pred cEEEEEEcChHh
Confidence 999999987643
No 359
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=5.5e-14 Score=124.97 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=96.9
Q ss_pred CCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCCCCCC---------------------------CCCCCCCC
Q psy6490 109 SGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRST---------------------------PTGDDPTS 161 (398)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~ 161 (398)
.+++|+.+.+...+..++..+++....+..+.+............ ......++
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 151 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCC
Confidence 467889999999999888766665555554444433211100000 00112357
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccC-CcccCCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLD-GKKIDPKHAT 238 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~-g~~l~v~~~~ 238 (398)
++|||+|||.++++++|+++|+.|| .|.+++++.+ ++|||||+|.+.++|.+|++ +++..++ |+.|.|.++.
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 9999999999999999999999999 9999999764 38899999999999999998 8999999 9999999886
Q ss_pred C
Q psy6490 239 P 239 (398)
Q Consensus 239 ~ 239 (398)
+
T Consensus 227 ~ 227 (229)
T 2adc_A 227 S 227 (229)
T ss_dssp S
T ss_pred C
Confidence 5
No 360
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=3.7e-14 Score=123.06 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=94.7
Q ss_pred CCCCCCCCCChhhHhhhhCCCccccccceeeeecCCCCCCC---------------------------CCCCCCCCCCCC
Q psy6490 109 SGRSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDS---------------------------GRSTPTGDDPTS 161 (398)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~ 161 (398)
.++++..+.+...+..++..+++....+....+........ ..........++
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 120 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 120 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCc
Confidence 45788888898888888776665444444333332211100 000001112458
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccC-CcccCCCCCC
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFG-AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLD-GKKIDPKHAT 238 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~-g~~l~v~~~~ 238 (398)
++|||+|||.++++++|+++|+.|| .|.+++++.+ .+|||||+|.+.++|.+|++ +++..++ |+.|.|.++.
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 9999999999999999999999999 9999999775 38999999999999999998 8999999 9999998876
Q ss_pred C
Q psy6490 239 P 239 (398)
Q Consensus 239 ~ 239 (398)
+
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=2.2e-14 Score=110.78 Aligned_cols=71 Identities=17% Similarity=0.321 Sum_probs=58.7
Q ss_pred ecCCCCCCCHHHHHHHH------------hhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeCCEEE
Q psy6490 254 VGGVSQDTSAEEVKAYF------------SQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKV 320 (398)
Q Consensus 254 V~nLp~~~tee~L~~~F------------~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~g~~i 320 (398)
+.||+..+++++|+++| ++||.|.+|+|.++. +++++|||||+|++.++|.+|+ .|||+.++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44566666777666555 999999999999885 4789999999999977776555 799999999999
Q ss_pred EEEec
Q psy6490 321 ECKKA 325 (398)
Q Consensus 321 ~v~~a 325 (398)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=6.2e-14 Score=123.75 Aligned_cols=79 Identities=20% Similarity=0.367 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCccc
Q psy6490 158 DPTSAKLFVGGLSWQT---------SSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTL 227 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~---------t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~ 227 (398)
+...++|||+||+.++ +|++|+++|++||.|++|+|+.+ +|||||+|.+.++|+.|++ |++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578999999999998 79999999999999999999864 8999999999999999998 889888
Q ss_pred ------------CCcccCCCCCCCCCC
Q psy6490 228 ------------DGKKIDPKHATPKNR 242 (398)
Q Consensus 228 ------------~g~~l~v~~~~~~~~ 242 (398)
.|+.|.|+|+.....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999976543
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.7e-13 Score=106.36 Aligned_cols=82 Identities=16% Similarity=0.291 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCC
Q psy6490 157 DDPTSAKLFVGGLSWQTS-----------SEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPI 224 (398)
Q Consensus 157 ~~~~~~~l~v~nLp~~~t-----------~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~ 224 (398)
....+++|+|+||-...+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++ +++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 344789999999944332 5899999999999999966 554 279999999999999999997 999
Q ss_pred cccCCcccCCCCCCCCCC
Q psy6490 225 HTLDGKKIDPKHATPKNR 242 (398)
Q Consensus 225 ~~~~g~~l~v~~~~~~~~ 242 (398)
..++|+.|.|.++..+..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999876554
No 364
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1e-12 Score=100.18 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecCchH
Q psy6490 259 QDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPKE 329 (398)
Q Consensus 259 ~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~~k~ 329 (398)
.++++++|+++|++||.|++|+|+ ++++|||||+|++.++|+.|++. +..+.|+.|+|+|++.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCCC
Confidence 578999999999999999999987 36799999999998888777764 455789999999998764
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.37 E-value=3.9e-13 Score=103.83 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=69.1
Q ss_pred CCcEEEEcCC--CCCCC--------HHHHHHHHhcCCCEEEEEEeeCCCC--CCcccEEEEEEcChHhHHHHHh-CCCcc
Q psy6490 160 TSAKLFVGGL--SWQTS--------SEKLREYFGMFGAVTDVLIMKDPIT--QRSRGFGFITFAEPETVEKVLK-VPIHT 226 (398)
Q Consensus 160 ~~~~l~v~nL--p~~~t--------~~~L~~~f~~~G~i~~~~~~~~~~~--~~~~g~afV~f~~~e~a~~al~-~~~~~ 226 (398)
+++.|.|.|+ +.++. +++|++.|++||.|.+|+|.+++.+ +.++||+||+|.+.++|.+|++ +|+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 6899999998 44443 3689999999999999999988754 4689999999999999999998 99999
Q ss_pred cCCcccCCCCCC
Q psy6490 227 LDGKKIDPKHAT 238 (398)
Q Consensus 227 ~~g~~l~v~~~~ 238 (398)
++||.|.+.+..
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999887754
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=1.8e-12 Score=101.31 Aligned_cols=81 Identities=10% Similarity=0.034 Sum_probs=64.7
Q ss_pred cccceeecCCCC--CC--------CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH-HHHCCceeC
Q psy6490 248 RTKKIFVGGVSQ--DT--------SAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHI-CEIHFHMIK 316 (398)
Q Consensus 248 ~~~~l~V~nLp~--~~--------tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~-~~l~~~~i~ 316 (398)
.+++|.|+|+=. +. .++||++.|++||.|++|.|.++. ++||+||+|++.++|.+| .+|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467788888832 21 246899999999999999986652 489999999997766555 579999999
Q ss_pred CEEEEEEecCchHHHh
Q psy6490 317 NKKVECKKAQPKEAVQ 332 (398)
Q Consensus 317 g~~i~v~~a~~k~~~~ 332 (398)
||.|+|.|+....-..
T Consensus 82 GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 82 GKMITAAYVPLPTYHN 97 (114)
T ss_dssp TEECEEEEECHHHHHH
T ss_pred CEEEEEEEEcHHHHHH
Confidence 9999999997665443
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.9e-12 Score=94.93 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=63.0
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccC
Q psy6490 161 SAKLFVGGLS-------WQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKID 233 (398)
Q Consensus 161 ~~~l~v~nLp-------~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~ 233 (398)
.++|.|.-.. .++++++|+++|++||.|.+|+|+. +++|||||+|.+.++|++|++. ...+.|+.|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQN-EVGLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEE
Confidence 4566666544 4689999999999999999999983 4799999999999999999985 3447799999
Q ss_pred CCCCCCCCC
Q psy6490 234 PKHATPKNR 242 (398)
Q Consensus 234 v~~~~~~~~ 242 (398)
|.++..+..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999876543
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=2.7e-13 Score=104.59 Aligned_cols=71 Identities=18% Similarity=0.330 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCccc
Q psy6490 166 VGGLSWQTSSEKLREYF------------GMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKI 232 (398)
Q Consensus 166 v~nLp~~~t~~~L~~~f------------~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l 232 (398)
+.||+.++++++|++.| ++||.|.+|+|.+++ +++++|||||+|.+.++|.+|++ +++..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778888777666 999999999999886 47899999999999999999998 89999999999
Q ss_pred CCCCC
Q psy6490 233 DPKHA 237 (398)
Q Consensus 233 ~v~~~ 237 (398)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 88765
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=9e-13 Score=103.78 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=68.8
Q ss_pred CCcEEEEcCCC--CCC---CHHHHHHHHhcCCCEEEEEEeeCCC----CCCcccEEEEEEcChHhHHHHHh-CCCcccCC
Q psy6490 160 TSAKLFVGGLS--WQT---SSEKLREYFGMFGAVTDVLIMKDPI----TQRSRGFGFITFAEPETVEKVLK-VPIHTLDG 229 (398)
Q Consensus 160 ~~~~l~v~nLp--~~~---t~~~L~~~f~~~G~i~~~~~~~~~~----~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g 229 (398)
++++|+|+|+- .++ .+++|++.|++||.|.+|+|.+++. +++++||+||+|.+.++|.+|++ +|+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67999999993 222 3689999999999999999999864 45788999999999999999998 89999999
Q ss_pred cccCCCCCC
Q psy6490 230 KKIDPKHAT 238 (398)
Q Consensus 230 ~~l~v~~~~ 238 (398)
|.|.+.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999887764
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=5.9e-12 Score=117.06 Aligned_cols=75 Identities=11% Similarity=0.216 Sum_probs=61.7
Q ss_pred CccccceeecC--CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HHCCceeC---CE-
Q psy6490 246 GNRTKKIFVGG--VSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIK---NK- 318 (398)
Q Consensus 246 ~~~~~~l~V~n--Lp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~-~l~~~~i~---g~- 318 (398)
..++++|||+| |++.+||++|+++|++||.|++|++.. +||||||+|++.++|++|+ +|||+.+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 578999999999999999999887643 4899999999977776555 69999883 44
Q ss_pred -EEEEEecC
Q psy6490 319 -KVECKKAQ 326 (398)
Q Consensus 319 -~i~v~~a~ 326 (398)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57778774
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=4.3e-11 Score=87.51 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=60.9
Q ss_pred cccceeecCCC----CCCCH----HHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEE
Q psy6490 248 RTKKIFVGGVS----QDTSA----EEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKK 319 (398)
Q Consensus 248 ~~~~l~V~nLp----~~~te----e~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~ 319 (398)
+..||+|.-.+ .++-. .+|.+.|+.||.|..++++.|+ +||+|++.++|.+|++|||..++||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 45567777665 23333 6789999999999999998873 89999999999999899999999999
Q ss_pred EEEEecCch
Q psy6490 320 VECKKAQPK 328 (398)
Q Consensus 320 i~v~~a~~k 328 (398)
|+|+++++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998753
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=2.1e-11 Score=113.31 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=56.7
Q ss_pred CCCcEEEEcC--CCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCccc
Q psy6490 159 PTSAKLFVGG--LSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTL 227 (398)
Q Consensus 159 ~~~~~l~v~n--Lp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~ 227 (398)
.++++|||+| |+.++||++|+++|++||+|.+|++.. +||||||+|.+.++|++|++ +|+..+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 4789999999 588999999999999999999987753 48999999999999999998 888776
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=6.3e-11 Score=92.61 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=67.1
Q ss_pred CccccceeecCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCC-HHHH-HHHHHH--CCceeCCEEE
Q psy6490 246 GNRTKKIFVGGVSQD-TSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN-EEVV-DHICEI--HFHMIKNKKV 320 (398)
Q Consensus 246 ~~~~~~l~V~nLp~~-~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~-~eaa-~a~~~l--~~~~i~g~~i 320 (398)
......|||+||+.+ +++++|+++|+.||.|.+|.+.++.. .|||+|.+ .++| +++..+ ++..|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 446778999999999 99999999999999999999988853 59999999 6555 556667 5888999999
Q ss_pred EEEecCchHHH
Q psy6490 321 ECKKAQPKEAV 331 (398)
Q Consensus 321 ~v~~a~~k~~~ 331 (398)
+++.....++.
T Consensus 89 ~~evL~GeeE~ 99 (121)
T 1owx_A 89 TWEVLEGEVEK 99 (121)
T ss_dssp EEEECCHHHHH
T ss_pred EEEECCCHHHH
Confidence 99988766544
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=5.1e-11 Score=93.03 Aligned_cols=75 Identities=11% Similarity=0.137 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCC----------CHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccC
Q psy6490 160 TSAKLFVGGLSWQT----------SSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLD 228 (398)
Q Consensus 160 ~~~~l~v~nLp~~~----------t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~ 228 (398)
++++|.+.|+=..- -+++|++.|++||.|.+|.+.++. ++||+||+|.+.++|.+|++ +|+..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 67899999983322 235789999999999999997663 59999999999999999998 9999999
Q ss_pred CcccCCCCCC
Q psy6490 229 GKKIDPKHAT 238 (398)
Q Consensus 229 g~~l~v~~~~ 238 (398)
||.|.+.+..
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999988764
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=6e-10 Score=81.83 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=60.5
Q ss_pred ccccceeecCCCCC-----CCH----HHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCC
Q psy6490 247 NRTKKIFVGGVSQD-----TSA----EEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKN 317 (398)
Q Consensus 247 ~~~~~l~V~nLp~~-----~te----e~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g 317 (398)
.+..||+|.-++.+ +-. .+|.+.|+.||.|..++++.|+ +||+|.+.++|.+|++|||..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 45668888887643 222 5689999999999999999883 999999999998888899999999
Q ss_pred EEEEEEecC
Q psy6490 318 KKVECKKAQ 326 (398)
Q Consensus 318 ~~i~v~~a~ 326 (398)
|.|+|++-.
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999999854
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=79.71 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=61.7
Q ss_pred CCcEEEEcCCCC----CCCH----HHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcc
Q psy6490 160 TSAKLFVGGLSW----QTSS----EKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKK 231 (398)
Q Consensus 160 ~~~~l~v~nLp~----~~t~----~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~ 231 (398)
+..||+|.-.+. ++-+ .+|.+.|+.||.|..++++.|+ +||+|.+.++|.+|+++++..++||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 667888887762 3333 6688999999999999999873 89999999999999999999999999
Q ss_pred cCCCCCCC
Q psy6490 232 IDPKHATP 239 (398)
Q Consensus 232 l~v~~~~~ 239 (398)
|+|+..++
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99987764
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.92 E-value=8.7e-09 Score=77.01 Aligned_cols=73 Identities=8% Similarity=0.111 Sum_probs=65.3
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhc-----CCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHCCceeCCEEE
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQF-----GKVEETVMLMDQQTKRHRGFGFVTFEN-EEVVDHICEIHFHMIKNKKV 320 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~-----G~i~~v~i~~~~~~~~~kg~afV~F~~-~eaa~a~~~l~~~~i~g~~i 320 (398)
+..++|-|-|||+.+++..|+.+.++| |.|+++.+..| -+-|+|+|.| ..++++.+.|+|..|+||+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346789999999999999999999999 99999999888 4579999999 46778889999999999999
Q ss_pred EEEec
Q psy6490 321 ECKKA 325 (398)
Q Consensus 321 ~v~~a 325 (398)
+|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99754
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.7e-09 Score=83.31 Aligned_cols=70 Identities=20% Similarity=0.148 Sum_probs=58.3
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcC-hHhHHHHHh-C--CCcccCCcccC
Q psy6490 159 PTSAKLFVGGLSWQ-TSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAE-PETVEKVLK-V--PIHTLDGKKID 233 (398)
Q Consensus 159 ~~~~~l~v~nLp~~-~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~-~e~a~~al~-~--~~~~~~g~~l~ 233 (398)
.....|||+||+.+ +++++|+++|+.||.|..|.+.++.. .|||+|.+ .++|..|++ + .+..|+|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 47799999999999 99999999999999999999988753 59999999 788998887 4 34455555443
Q ss_pred C
Q psy6490 234 P 234 (398)
Q Consensus 234 v 234 (398)
+
T Consensus 90 ~ 90 (121)
T 1owx_A 90 W 90 (121)
T ss_dssp E
T ss_pred E
Confidence 3
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=3e-09 Score=93.70 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHH-HHHHHCCceeCCEEEEEEecCchHHH
Q psy6490 260 DTSAEEVKAYFSQFGKVEETVMLMDQQ----TKRHRGFGFVTFENEEVVD-HICEIHFHMIKNKKVECKKAQPKEAV 331 (398)
Q Consensus 260 ~~tee~L~~~F~~~G~i~~v~i~~~~~----~~~~kg~afV~F~~~eaa~-a~~~l~~~~i~g~~i~v~~a~~k~~~ 331 (398)
+-.+++|++.|++||.|.++.|.++.. +++++|++||+|.+.++|. |+..|||..++||.|+|.++....-+
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhh
Confidence 446789999999999999999986644 4589999999999977665 55579999999999999998765433
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=6.5e-09 Score=76.33 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=61.2
Q ss_pred CCcEEEEcCCCCC------CCH---HHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCc
Q psy6490 160 TSAKLFVGGLSWQ------TSS---EKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGK 230 (398)
Q Consensus 160 ~~~~l~v~nLp~~------~t~---~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~ 230 (398)
+..||+|.-++.+ ..+ .+|.+.|+.||+|..++++.|+ +||+|.+.++|.+||++++..++||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 6789999988643 232 5688999999999999999883 9999999999999999999999999
Q ss_pred ccCCCCCC
Q psy6490 231 KIDPKHAT 238 (398)
Q Consensus 231 ~l~v~~~~ 238 (398)
.|+|+...
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99987654
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.65 E-value=2.5e-08 Score=87.73 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHHhcCCCEEEEEEeeCCC----CCCcccEEEEEEcChHhHHHHHh-CCCcccCC
Q psy6490 160 TSAKLFVGGLSW-----QTSSEKLREYFGMFGAVTDVLIMKDPI----TQRSRGFGFITFAEPETVEKVLK-VPIHTLDG 229 (398)
Q Consensus 160 ~~~~l~v~nLp~-----~~t~~~L~~~f~~~G~i~~~~~~~~~~----~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g 229 (398)
..+.+.+.|+-. +-.+++|++.|++||.|.++++.++.. +++++|++||+|.+.++|.+|++ +++..++|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 344555555522 345688999999999999999986543 45899999999999999999998 99999999
Q ss_pred cccCCCCCC
Q psy6490 230 KKIDPKHAT 238 (398)
Q Consensus 230 ~~l~v~~~~ 238 (398)
|.|.+.+..
T Consensus 203 r~i~~~~~~ 211 (222)
T 3dxb_A 203 RKVVAEVYD 211 (222)
T ss_dssp SBCEEEECC
T ss_pred eEEEEEEcC
Confidence 999887764
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.5e-06 Score=64.49 Aligned_cols=88 Identities=28% Similarity=0.408 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhc---C--CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcccCC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGM---F--GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKKIDP 234 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~---~--G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~l~v 234 (398)
-..+|.|.|||.+++++.|.-+|++ - |+|.++.... +-|+|+|.+.+.+++.|+...+.|++..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 5689999999999999999999986 2 4888887744 3699999999999999998788999999988
Q ss_pred CCCCCCCCCccCccccceeecCCCCCCC
Q psy6490 235 KHATPKNRPKIGNRTKKIFVGGVSQDTS 262 (398)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t 262 (398)
.....+. ..+|++.+|+..++
T Consensus 79 ~P~~~~~-------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPRA-------PARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCCC-------CCCCCCCSCCCCCC
T ss_pred EcCCCCC-------cceEeeecCCCCCC
Confidence 7765443 46799999998875
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.3e-05 Score=59.59 Aligned_cols=91 Identities=20% Similarity=0.253 Sum_probs=74.5
Q ss_pred cccceeecCCCCCCCHHHHHHHHhh-c----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEE
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQ-F----GKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVEC 322 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~-~----G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v 322 (398)
..++|.|.|||.++++|.|.-+|+. . |.|+++.... +-|+|+|.+.+.++.+++...+.|.+..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4578999999999999999999997 2 5788776643 3789999999999999998899999999999
Q ss_pred EecCchHHHhhhhhcCCccccCCCCCCCCCCC
Q psy6490 323 KKAQPKEAVQANLLVGKRVILGPLGLRMAAPA 354 (398)
Q Consensus 323 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (398)
.-..++ ..++.++.++...+..+.
T Consensus 79 ~P~~~~--------~~~r~ll~gl~~~t~~~~ 102 (104)
T 2dhx_A 79 RPAPPR--------APARLLLQGLPPGTSGPS 102 (104)
T ss_dssp EECCCC--------CCCCCCCCSCCCCCCCCC
T ss_pred EcCCCC--------CcceEeeecCCCCCCCCC
Confidence 876655 346777777777776553
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=2.4e-06 Score=63.92 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=62.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC-----CCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHH-hCCCcccCCcccC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMF-----GAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVL-KVPIHTLDGKKID 233 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~-----G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al-~~~~~~~~g~~l~ 233 (398)
..++|-+-|||..+++..|+.+++.+ |.|+.+.+..|. +-|+|+|.|..+|-+|. .+++.+|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 57899999999999999999999999 999999999984 45999999999988875 7999999999886
Q ss_pred CC
Q psy6490 234 PK 235 (398)
Q Consensus 234 v~ 235 (398)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=8.2e-05 Score=55.54 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=58.5
Q ss_pred ccceeecCCCCCC-C----HHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHHCCceeCCEEEEE
Q psy6490 249 TKKIFVGGVSQDT-S----AEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEIHFHMIKNKKVEC 322 (398)
Q Consensus 249 ~~~l~V~nLp~~~-t----ee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l~~~~i~g~~i~v 322 (398)
.++|+|.||+.++ + .+.++++|..|+++.....++.- .-..|.|.+.++| ++-++||+..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4679999998765 2 25778999999998887776552 2568999996555 555689999999999999
Q ss_pred EecCch
Q psy6490 323 KKAQPK 328 (398)
Q Consensus 323 ~~a~~k 328 (398)
-++.+-
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999843
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=0.00027 Score=54.25 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=64.3
Q ss_pred ccccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCC-EEEEEEec
Q psy6490 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKN-KKVECKKA 325 (398)
Q Consensus 247 ~~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g-~~i~v~~a 325 (398)
...+.|.|-+.+... .+.|.+.|++||.|.+.... .+ ..+-.|+|++..+|++|+..||..|+| -.|-|.++
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 346789999998885 67788899999999987751 12 459999999999999999999999984 78889988
Q ss_pred CchHHHh
Q psy6490 326 QPKEAVQ 332 (398)
Q Consensus 326 ~~k~~~~ 332 (398)
..+.-..
T Consensus 95 ~d~~vi~ 101 (119)
T 1wwh_A 95 IDKNVME 101 (119)
T ss_dssp CCHHHHC
T ss_pred CCHHHHH
Confidence 7665443
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.46 E-value=0.00047 Score=50.53 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=43.3
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE 309 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~ 309 (398)
....++| +.|.++...||.++|+.||.|. |+.+-|. -|||.|.+.+.|..++.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 3455666 9999999999999999999766 5555552 79999999998887776
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.44 E-value=0.00042 Score=50.81 Aligned_cols=67 Identities=7% Similarity=0.125 Sum_probs=52.5
Q ss_pred cceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHH-HHCCceeC
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKR--HRGFGFVTFENEEVVDHIC-EIHFHMIK 316 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~--~kg~afV~F~~~eaa~a~~-~l~~~~i~ 316 (398)
++|.|++||..+||+++.+.++.+..+.....+..+.+.+ .-..|||.|.+.|++.... .++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999999998888777665543322 2357999999977776655 68888764
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.37 E-value=0.00062 Score=49.91 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=52.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCC--cccEEEEEEcChHhHHHHHh-CCCccc
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQR--SRGFGFITFAEPETVEKVLK-VPIHTL 227 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~--~~g~afV~f~~~e~a~~al~-~~~~~~ 227 (398)
++|.|++||.++||+++.+.++.+.++.....+..+.+.+ .-.-|||.|.+.+++....+ .++..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 5789999999999999999999998887777766554332 23459999999999998876 455554
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.34 E-value=0.00088 Score=49.11 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=45.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
....++| ++|.++...||.++|+.||.| .|+.+.|. .|||.|.+++.|..|++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 5567777 999999999999999999954 46666663 79999999999999987
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.30 E-value=0.00071 Score=51.94 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=58.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCC-cccCCCC
Q psy6490 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDG-KKIDPKH 236 (398)
Q Consensus 158 ~~~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g-~~l~v~~ 236 (398)
....+.|.|-+.|.+. ...|.+.|++||.|++..... ...+-.|.|.+..+|++||..|+..++| ..|-|.+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 3467899999999985 566888899999999887621 2569999999999999999999999875 4455554
Q ss_pred C
Q psy6490 237 A 237 (398)
Q Consensus 237 ~ 237 (398)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.00066 Score=50.64 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=60.5
Q ss_pred CcEEEEcCCCCCC-CH----HHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCC
Q psy6490 161 SAKLFVGGLSWQT-SS----EKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDP 234 (398)
Q Consensus 161 ~~~l~v~nLp~~~-t~----~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v 234 (398)
.++|+|.||+.++ +. +.++++|..|+++......+.- + -..|.|.+.++|.+|-. +++..++|++|++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998875 22 5678999999999888887753 2 57999999999999965 8999999999988
Q ss_pred CCCCC
Q psy6490 235 KHATP 239 (398)
Q Consensus 235 ~~~~~ 239 (398)
..+..
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 87763
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.01 E-value=0.00055 Score=50.34 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=42.0
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE 309 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~ 309 (398)
...++| +.|.++...||.++|+.||.|. |+.+-|. -|||.|.+.+.|+.++.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 445666 9999999999999999999655 5555552 79999999888877765
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.98 E-value=0.0013 Score=48.30 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=44.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 161 ~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
...++| ++|.++...||.++|+.|| -..|+.+.|. .|||.|.+++.|..|++
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 355666 9999999999999999999 4456677764 79999999999999987
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.82 E-value=0.0017 Score=50.52 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=57.2
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEE-EeecC--------CCC-----CcceEEEEEeCCHHHHHHHHHHCCce
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETV-MLMDQ--------QTK-----RHRGFGFVTFENEEVVDHICEIHFHM 314 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~-i~~~~--------~~~-----~~kg~afV~F~~~eaa~a~~~l~~~~ 314 (398)
...|.|-+.|.+. ...|.+.|++||.|.+-. ..++. ... ...+|..|+|++..+|.+|+..||..
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 4557788886665 456778899999987621 11100 000 12568899999999999999999999
Q ss_pred eCCEEEEEEecCch
Q psy6490 315 IKNKKVECKKAQPK 328 (398)
Q Consensus 315 i~g~~i~v~~a~~k 328 (398)
|+|..|-|.++++.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99999999998643
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.52 E-value=0.0025 Score=61.22 Aligned_cols=57 Identities=12% Similarity=0.314 Sum_probs=44.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhC
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~ 222 (398)
..++|||. .+.++++++|.++|++||.|.++.+-+++ .-|+.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 46899998 79999999999999999999999887764 46999999999999988764
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.27 E-value=0.0032 Score=46.36 Aligned_cols=69 Identities=4% Similarity=0.070 Sum_probs=47.3
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHH-HHCCceeC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKR--HRGFGFVTFENEEVVDHIC-EIHFHMIK 316 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~--~kg~afV~F~~~eaa~a~~-~l~~~~i~ 316 (398)
.+-+|.|+.||..+||+++.+.++..-.+.....+..+.+.+ .-..|||.|.+.|+..... ..+|..+-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 345799999999999999988888765554433322221111 1245899999988777655 57887764
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.25 E-value=0.0041 Score=45.85 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=47.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCC--cccEEEEEEcChHhHHHHHh-CCCccc
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQR--SRGFGFITFAEPETVEKVLK-VPIHTL 227 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~--~~g~afV~f~~~e~a~~al~-~~~~~~ 227 (398)
.+-.|.|+.||+.+||+++.+.++.+-++.....+..+.+.+ .-..|||.|.+.++.....+ .++..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 467899999999999999988887665543333322222211 12359999999999999877 555554
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.10 E-value=0.0023 Score=61.43 Aligned_cols=59 Identities=15% Similarity=0.308 Sum_probs=43.3
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCC
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHF 312 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~ 312 (398)
..++|+|. .+.++++.+|.++|+.||.|.++.+.+++ .-||.|+|.+.+++.++++..+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccC
Confidence 45679998 79999999999999999999988776542 3699999999998888875433
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.94 E-value=0.0029 Score=49.25 Aligned_cols=77 Identities=14% Similarity=0.255 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEE-EeeC------------CCCC-CcccEEEEEEcChHhHHHHHhCCCc
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVL-IMKD------------PITQ-RSRGFGFITFAEPETVEKVLKVPIH 225 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~-~~~~------------~~~~-~~~g~afV~f~~~e~a~~al~~~~~ 225 (398)
....|.|-+.|.+.+.. +.+.|++||.|.+-. +.++ +... ....+..|.|.+..+|.+||..|+.
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 44677788887766554 677899999987621 1110 0000 1356789999999999999999999
Q ss_pred ccCCcccCCCCC
Q psy6490 226 TLDGKKIDPKHA 237 (398)
Q Consensus 226 ~~~g~~l~v~~~ 237 (398)
.++|.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999976655544
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.11 E-value=1.4 Score=43.03 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=41.1
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE 309 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~ 309 (398)
+...++|+ ++..+...+|.++|+.||.|. |+.+-| ..|||.|.+.+.+..++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd-------t~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS-------SEEEEECSCHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC-------CeEEEEECCHHHHHHHHH
Confidence 34556666 899999999999999999654 554433 279999999988877664
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.87 E-value=1.3 Score=43.09 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=43.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 160 ~~~~l~v~nLp~~~t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
....++|+ ++..+...+|.++|+.||.+ +|+.+.| ..+||.|.+.+.|..+++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHH
Confidence 45677787 99999999999999999954 4555544 269999999999999887
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=71.24 E-value=5.6 Score=27.35 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHhhcCC-----eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEEEEEEecC
Q psy6490 259 QDTSAEEVKAYFSQFGK-----VEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQ 326 (398)
Q Consensus 259 ~~~tee~L~~~F~~~G~-----i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~i~v~~a~ 326 (398)
..++..+|..++..-+. |-.|.|.- .|.||+-....+.+.+..|++..++|+.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHHHHHHHHHHhccccCcCceEEEEECC
Confidence 35666777777775443 45555532 28899998877777788899999999999998764
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=62.64 E-value=20 Score=29.02 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=36.9
Q ss_pred ceeecCCCC---------CCCHHHHHHHH--hhcCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHH
Q psy6490 251 KIFVGGVSQ---------DTSAEEVKAYF--SQFGKVEETVMLMDQQTKRHRGFGFVTFEN-EEVVDHIC 308 (398)
Q Consensus 251 ~l~V~nLp~---------~~tee~L~~~F--~~~G~i~~v~i~~~~~~~~~kg~afV~F~~-~eaa~a~~ 308 (398)
++.|-|++. ..+..+|++.| ..|..++ |+.+.+.. ..+|++.|+|.+ -.--+.|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 355667665 14457899977 8999877 66665532 368999999987 44433333
No 405
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=61.99 E-value=41 Score=24.05 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=23.2
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 187 AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 187 ~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
.|.++.+... ..||.||++...++...+++
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~ 68 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIK 68 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHT
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHH
Confidence 4666665443 69999999999988888876
No 406
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=59.38 E-value=7.3 Score=28.99 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEe----ecCCCCCcceEEEEEeCCHHHHHHH
Q psy6490 259 QDTSAEEVKAYFSQ-FGKVEETVML----MDQQTKRHRGFGFVTFENEEVVDHI 307 (398)
Q Consensus 259 ~~~tee~L~~~F~~-~G~i~~v~i~----~~~~~~~~kg~afV~F~~~eaa~a~ 307 (398)
...+..||++.+.+ |+.-.++.++ ..-..|+++|||.| |+|.+.++..
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46788888887765 6642222222 22234567788765 6778888764
No 407
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=55.05 E-value=6.9 Score=28.65 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHH
Q psy6490 259 QDTSAEEVKAYFSQ-FGKVEETVMLMDQQ----TKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 259 ~~~tee~L~~~F~~-~G~i~~v~i~~~~~----~~~~kg~afV~F~~~eaa~a~~ 308 (398)
...+..||++.+.+ |+.-.++.++..-. .|+++|||.| |+|.+.++...
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~E 82 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLYE 82 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 36788888887765 65534444444322 3557777765 45577776654
No 408
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=54.66 E-value=41 Score=24.63 Aligned_cols=49 Identities=10% Similarity=0.293 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEE----EeecCCCCCcceEEEEEeCCHHHHHHHH
Q psy6490 259 QDTSAEEVKAYFSQ-FGKVEETV----MLMDQQTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 259 ~~~tee~L~~~F~~-~G~i~~v~----i~~~~~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
...+..+|++.+.+ |+.-.++. +...-..|+++|||.| |+|.+.++...
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 56788899887775 55422222 2223334667777755 67788888765
No 409
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=50.50 E-value=15 Score=29.00 Aligned_cols=48 Identities=15% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEeec----CCCCCcceEEEEEeCCHHHHHHH
Q psy6490 259 QDTSAEEVKAYFSQ-FGKVEETVMLMD----QQTKRHRGFGFVTFENEEVVDHI 307 (398)
Q Consensus 259 ~~~tee~L~~~F~~-~G~i~~v~i~~~----~~~~~~kg~afV~F~~~eaa~a~ 307 (398)
...+..||++.+.. |+.-.++.++.. -..|.+.|||.| |+|.|.++.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 46788899988876 665333333322 223567777776 5778888764
No 410
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=48.67 E-value=12 Score=29.02 Aligned_cols=48 Identities=15% Similarity=0.371 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEEEe----ecCCCCCcceEEEEEeCCHHHHHHH
Q psy6490 259 QDTSAEEVKAYFSQ-FGKVEETVML----MDQQTKRHRGFGFVTFENEEVVDHI 307 (398)
Q Consensus 259 ~~~tee~L~~~F~~-~G~i~~v~i~----~~~~~~~~kg~afV~F~~~eaa~a~ 307 (398)
...+..||++.+.. |+.-.++.++ ..--.|.+.|||.| |+|.|.++..
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 46889999998875 7643332222 22234567777766 5678877764
No 411
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=48.25 E-value=51 Score=24.17 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHhh-cCCeeEEE----EeecCCCCCcceEEEEEeCCHHHHHHH
Q psy6490 259 QDTSAEEVKAYFSQ-FGKVEETV----MLMDQQTKRHRGFGFVTFENEEVVDHI 307 (398)
Q Consensus 259 ~~~tee~L~~~F~~-~G~i~~v~----i~~~~~~~~~kg~afV~F~~~eaa~a~ 307 (398)
...+..+|++.+.+ |+.-.++. +...-..|+++|||.| |+|.+.++..
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788899887775 55422222 2223334667788755 6778888763
No 412
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=47.96 E-value=70 Score=22.57 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=55.0
Q ss_pred cccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHH-HHHHHH---CC----ceeCCEE
Q psy6490 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVV-DHICEI---HF----HMIKNKK 319 (398)
Q Consensus 248 ~~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa-~a~~~l---~~----~~i~g~~ 319 (398)
..+-|.|-|+|..+-..++.-...-.|.--.|..+ .|-|.|+|.+.+.. .++.++ |+ .+|.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 35668899999999998888777777876666654 35799999996544 444443 22 3478888
Q ss_pred EEEEecCchHHHh
Q psy6490 320 VECKKAQPKEAVQ 332 (398)
Q Consensus 320 i~v~~a~~k~~~~ 332 (398)
+.|--..+.++.+
T Consensus 83 cdvistipedeek 95 (129)
T 4eyt_A 83 CDVISTIPEDEEK 95 (129)
T ss_dssp EEEECCCCHHHHH
T ss_pred eeeeecCCchhhh
Confidence 8887776665544
No 413
>1wfb_A Antifreeze protein isoform HPLC6; ICE binding protein, thermal hysteresis protein, antifreeze polypeptide; 1.50A {Pseudopleuronectes americanus} SCOP: j.21.1.1 PDB: 1wfa_A
Probab=41.10 E-value=46 Score=18.44 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy6490 367 SQAQAQVQ 374 (398)
Q Consensus 367 ~q~~~~~~ 374 (398)
....+...
T Consensus 17 akaaaelt 24 (38)
T 1wfb_A 17 AKAAAELT 24 (38)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 414
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=39.73 E-value=1.2e+02 Score=22.79 Aligned_cols=59 Identities=8% Similarity=0.176 Sum_probs=37.7
Q ss_pred cceeecCCCCCCCHHHHHHHHhh-------cCCeeEEEEeecCCC-CCcceE--E-EEEeCCHHHHHHHH
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQ-------FGKVEETVMLMDQQT-KRHRGF--G-FVTFENEEVVDHIC 308 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~-------~G~i~~v~i~~~~~~-~~~kg~--a-fV~F~~~eaa~a~~ 308 (398)
+.|.+-.|..+++++++.++.+. .-.|+++.+-++... +..+|| + +++|+|.++.++-.
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 34555568888888766555443 556888887776432 344454 3 46899988777644
No 415
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=37.21 E-value=85 Score=20.44 Aligned_cols=58 Identities=10% Similarity=-0.012 Sum_probs=42.0
Q ss_pred ccceeecCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCc
Q psy6490 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFH 313 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~ 313 (398)
..++.|.++.-.--...|.+.+.+ ..|..+.+-.. .+.+.|.|++.+....+++--|.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAGY 63 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcCC
Confidence 356889999888888999999999 88988877433 56788898844445555544443
No 416
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=36.40 E-value=1.1e+02 Score=21.98 Aligned_cols=55 Identities=9% Similarity=0.046 Sum_probs=34.8
Q ss_pred eeecCCCCCCCHHHHHHHHh-------hcCCeeEEEEeecCCCCCcceE---EEEEeCCHHHHHHH
Q psy6490 252 IFVGGVSQDTSAEEVKAYFS-------QFGKVEETVMLMDQQTKRHRGF---GFVTFENEEVVDHI 307 (398)
Q Consensus 252 l~V~nLp~~~tee~L~~~F~-------~~G~i~~v~i~~~~~~~~~kg~---afV~F~~~eaa~a~ 307 (398)
|.+-.|..+++++++.++.+ +...|+++.+-++.. +..+|| -+++|+|.++.++-
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y 72 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAY 72 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHH
Confidence 33445777887766555443 356788888877743 444454 34689998877653
No 417
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=35.39 E-value=1.3e+02 Score=22.34 Aligned_cols=58 Identities=7% Similarity=0.109 Sum_probs=36.5
Q ss_pred cceeecCCCCCCCHHHHHHHHhh-------cCCeeEEEEeecCCCCCcceE--E-EEEeCCHHHHHHHH
Q psy6490 250 KKIFVGGVSQDTSAEEVKAYFSQ-------FGKVEETVMLMDQQTKRHRGF--G-FVTFENEEVVDHIC 308 (398)
Q Consensus 250 ~~l~V~nLp~~~tee~L~~~F~~-------~G~i~~v~i~~~~~~~~~kg~--a-fV~F~~~eaa~a~~ 308 (398)
+.|.+-.|..+++++++.++.+. ...|+++.+-++.. +..+|| + +++|+|.++.++-.
T Consensus 23 ~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 23 RHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHh
Confidence 34555568888888876665554 34577777766643 444554 3 45888887776543
No 418
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=35.36 E-value=1.3e+02 Score=21.96 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=41.1
Q ss_pred ccceeecCCCCCCCHHH--HHHHHhh-----c------CC--eeEEEEeecCCC--CCcceEEEEEeCCHHHH----HHH
Q psy6490 249 TKKIFVGGVSQDTSAEE--VKAYFSQ-----F------GK--VEETVMLMDQQT--KRHRGFGFVTFENEEVV----DHI 307 (398)
Q Consensus 249 ~~~l~V~nLp~~~tee~--L~~~F~~-----~------G~--i~~v~i~~~~~~--~~~kg~afV~F~~~eaa----~a~ 307 (398)
.+.|.|.++|....+.. +..+|+. | .. |.++.-.....+ ...-..-.|.|....+- +++
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 45799999999733222 4444433 2 22 333322211111 11223567888764433 445
Q ss_pred HHHCCceeCCEEEEEE
Q psy6490 308 CEIHFHMIKNKKVECK 323 (398)
Q Consensus 308 ~~l~~~~i~g~~i~v~ 323 (398)
.+.....+.|..|++.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 5667788999999875
No 419
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=32.78 E-value=1.1e+02 Score=20.43 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=35.7
Q ss_pred EEEEcCC-CCCCCHHHHHHHHhcCC-----CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh-CCCcccCCcccCCC
Q psy6490 163 KLFVGGL-SWQTSSEKLREYFGMFG-----AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK-VPIHTLDGKKIDPK 235 (398)
Q Consensus 163 ~l~v~nL-p~~~t~~~L~~~f~~~G-----~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~ 235 (398)
+|||..- -..++..+|..++..-+ .|-.+++..+ |.||+-.... +..+++ +....+.|+.+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 4555322 23466677777776444 4566666433 7888886644 445554 66777889888776
Q ss_pred CC
Q psy6490 236 HA 237 (398)
Q Consensus 236 ~~ 237 (398)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 420
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=30.68 E-value=1.3e+02 Score=21.72 Aligned_cols=57 Identities=14% Similarity=0.252 Sum_probs=36.1
Q ss_pred ceeecCCCCCCCHHHHHHHHh-------hcCCeeEEEEeecCCC---CCcceE--E-EEEeCCHHHHHHH
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFS-------QFGKVEETVMLMDQQT---KRHRGF--G-FVTFENEEVVDHI 307 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~-------~~G~i~~v~i~~~~~~---~~~kg~--a-fV~F~~~eaa~a~ 307 (398)
.|.+-.|..+++++++.++.+ +...|+++.+-++... +..+|| + +++|+|.++.++-
T Consensus 11 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 11 HTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Confidence 344555788888877655443 3556888877776432 444554 3 4689998877653
No 421
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.67 E-value=33 Score=26.66 Aligned_cols=48 Identities=13% Similarity=0.376 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHhh-cCC-eeEEEEeecC----CCCCcceEEEEEeCCHHHHHHHH
Q psy6490 260 DTSAEEVKAYFSQ-FGK-VEETVMLMDQ----QTKRHRGFGFVTFENEEVVDHIC 308 (398)
Q Consensus 260 ~~tee~L~~~F~~-~G~-i~~v~i~~~~----~~~~~kg~afV~F~~~eaa~a~~ 308 (398)
..+..||++.+.. |+. -.++.++..- ..|.+.|||.| |+|.|.++...
T Consensus 39 Tpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~I-Yds~d~aKk~E 92 (138)
T 3iz6_U 39 NVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLI-YDNLDAAKKYE 92 (138)
T ss_dssp CCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCC-SSCHHHHHSSC
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhcC
Confidence 5788999998875 665 3344444332 23667788865 67777777643
No 422
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=30.04 E-value=7.8 Score=30.78 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcC
Q psy6490 176 EKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAE 212 (398)
Q Consensus 176 ~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~ 212 (398)
+|+..+|...|.|+.+. + .|||+||+..+
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~-----~kGfGFI~~~~ 30 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---V-----RMGFGFLSMTA 30 (148)
T ss_dssp ----CCEEEEEEEEEEE---T-----TTTEEEEEEEE
T ss_pred CcccccccceeEEEEEE---C-----CCCeeEEeeCc
Confidence 45556666667665432 2 48999999863
No 423
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=29.46 E-value=1.6e+02 Score=21.39 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=36.7
Q ss_pred ceeecCCCCCCCHHHHHHHHhh-------cCCeeEEEEeecCCC-CCcceE---EEEEeCCHHHHHHHH
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFSQ-------FGKVEETVMLMDQQT-KRHRGF---GFVTFENEEVVDHIC 308 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~~-------~G~i~~v~i~~~~~~-~~~kg~---afV~F~~~eaa~a~~ 308 (398)
.|.+-.|..+++++++.++.+. .-.|+++.+-++... +..+|| -+++|+|.++.++-.
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 3455557888888776655443 456777777766432 334444 346899988877643
No 424
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=27.78 E-value=75 Score=22.51 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=22.1
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEEcC
Q psy6490 187 AVTDVLIMKDPITQRSRGFGFITFAE 212 (398)
Q Consensus 187 ~i~~~~~~~~~~~~~~~g~afV~f~~ 212 (398)
+|.++++.+-...|+-++||-|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 67888888777778899999999975
No 425
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=27.03 E-value=93 Score=24.73 Aligned_cols=37 Identities=32% Similarity=0.334 Sum_probs=28.4
Q ss_pred CCHHHHHHHHhcCCCE---EEEEEeeCCCCCCcccEEEEE
Q psy6490 173 TSSEKLREYFGMFGAV---TDVLIMKDPITQRSRGFGFIT 209 (398)
Q Consensus 173 ~t~~~L~~~f~~~G~i---~~~~~~~~~~~~~~~g~afV~ 209 (398)
.|+++|+++-.+.|.+ +++.+..|..+|+.+.|||-.
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5899999999999966 355666665588888887764
No 426
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=26.65 E-value=93 Score=24.73 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=28.0
Q ss_pred CCHHHHHHHHhhcCCee---EEEEeecCCCCCcceEEEEE
Q psy6490 261 TSAEEVKAYFSQFGKVE---ETVMLMDQQTKRHRGFGFVT 297 (398)
Q Consensus 261 ~tee~L~~~F~~~G~i~---~v~i~~~~~~~~~kg~afV~ 297 (398)
.|+++|+++-...|.+. ++.+..|..+|+.+.|||-.
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 68999999999999764 34555564489888888764
No 427
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.47 E-value=80 Score=22.35 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.2
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCC
Q psy6490 275 KVEETVMLMDQQTKRHRGFGFVTFEN 300 (398)
Q Consensus 275 ~i~~v~i~~~~~~~~~kg~afV~F~~ 300 (398)
.|.+|+|.+-...|+-++||=|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887766678889999999985
No 428
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.82 E-value=25 Score=23.41 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=8.6
Q ss_pred ceEEEEEeCC
Q psy6490 291 RGFGFVTFEN 300 (398)
Q Consensus 291 kg~afV~F~~ 300 (398)
++.|||.|+|
T Consensus 37 ~~~ClV~FeD 46 (68)
T 2e5p_A 37 REVCLVQFED 46 (68)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 5689999997
No 429
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=24.49 E-value=62 Score=30.53 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=41.1
Q ss_pred ceeecCCCCCC----CHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCEE
Q psy6490 251 KIFVGGVSQDT----SAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKK 319 (398)
Q Consensus 251 ~l~V~nLp~~~----tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~~ 319 (398)
.-+||||..-. -...+.++..+||.|..+++.. .-+|...+.+.++.++.-++..+.+|.
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~rp 79 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGRP 79 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBCC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 45678775432 1356778888999998887621 336777889999998876665555543
No 430
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=24.33 E-value=97 Score=23.91 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=33.7
Q ss_pred ee-ecCCCCCCCHHHHHHHHh-hcC--CeeEEEEeecC----------CCCCcceEEEEEeCC
Q psy6490 252 IF-VGGVSQDTSAEEVKAYFS-QFG--KVEETVMLMDQ----------QTKRHRGFGFVTFEN 300 (398)
Q Consensus 252 l~-V~nLp~~~tee~L~~~F~-~~G--~i~~v~i~~~~----------~~~~~kg~afV~F~~ 300 (398)
+. +..+...++++++++.+. .++ .|.++.+-..+ ......+|.|+.|+|
T Consensus 65 v~~v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 65 KILSKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp CCEEEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEEEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 44 788899999999999995 444 46666543321 112346789999986
No 431
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=24.30 E-value=1.1e+02 Score=22.42 Aligned_cols=30 Identities=10% Similarity=0.339 Sum_probs=24.2
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHh
Q psy6490 187 AVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221 (398)
Q Consensus 187 ~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 221 (398)
.|.++..... .+||-|||=.+..++..|++
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~ 69 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIE 69 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHT
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHh
Confidence 4666655433 59999999999999999987
No 432
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=24.15 E-value=92 Score=22.69 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.0
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEEcC
Q psy6490 187 AVTDVLIMKDPITQRSRGFGFITFAE 212 (398)
Q Consensus 187 ~i~~~~~~~~~~~~~~~g~afV~f~~ 212 (398)
+|.+|++.+-...|+-++||-|.|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888888777678899999999975
No 433
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.50 E-value=97 Score=22.77 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=21.9
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEEcC
Q psy6490 187 AVTDVLIMKDPITQRSRGFGFITFAE 212 (398)
Q Consensus 187 ~i~~~~~~~~~~~~~~~g~afV~f~~ 212 (398)
+|.+|++.+-...|+-++||-|.|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57888888777778899999999975
No 434
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=23.07 E-value=55 Score=30.62 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=37.0
Q ss_pred eecCCCCC---CCHHHHHHHHhhcCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHCCceeCCE
Q psy6490 253 FVGGVSQD---TSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNK 318 (398)
Q Consensus 253 ~V~nLp~~---~tee~L~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~F~~~eaa~a~~~l~~~~i~g~ 318 (398)
+|||+..- -....+.++.++||.|..+++.. .=+|...+.+.++.++.-++..+.+|
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~i~~vl~~~~~~f~~r 79 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW---------TPVVVLNGLAAVREALVTHGEDTADR 79 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT---------EEEEEEEHHHHHHHHHTTTGGGSCBC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC---------eeEEEECCHHHHHHHHHhCChhhcCC
Confidence 56776432 23456778888999998877621 12455667888888876555555443
No 435
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=22.85 E-value=2.1e+02 Score=21.30 Aligned_cols=57 Identities=5% Similarity=0.053 Sum_probs=35.5
Q ss_pred ceeecCCCCCCCHHHHHHHHhh------cCCeeEEEEeecCCC----CCcceE--E-EEEeCCHHHHHHH
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFSQ------FGKVEETVMLMDQQT----KRHRGF--G-FVTFENEEVVDHI 307 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~~------~G~i~~v~i~~~~~~----~~~kg~--a-fV~F~~~eaa~a~ 307 (398)
-|.+-.|..+++++++.++.+. ...|+++.+-++... +..+|| + +++|+|.++.++-
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~Y 92 (120)
T 3bn7_A 23 HQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKRY 92 (120)
T ss_dssp EEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHHH
Confidence 3444557788888776555443 456777777666442 334555 4 4588998877653
No 436
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=22.83 E-value=99 Score=22.51 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.2
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCC
Q psy6490 275 KVEETVMLMDQQTKRHRGFGFVTFEN 300 (398)
Q Consensus 275 ~i~~v~i~~~~~~~~~kg~afV~F~~ 300 (398)
.|.+|+|.+-...|+-++||=|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887766678889999999985
No 437
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.27 E-value=1e+02 Score=22.60 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=20.8
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCC
Q psy6490 275 KVEETVMLMDQQTKRHRGFGFVTFEN 300 (398)
Q Consensus 275 ~i~~v~i~~~~~~~~~kg~afV~F~~ 300 (398)
.|.+|+|.+-...|+-++||=|.|++
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46777777666678889999999985
No 438
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.90 E-value=1.6e+02 Score=23.80 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCHHHHHHHH--hcCCCEEEEEEeeCCCCCCcccEEEEEEcChHh-HHHHHh
Q psy6490 173 TSSEKLREYF--GMFGAVTDVLIMKDPITQRSRGFGFITFAEPET-VEKVLK 221 (398)
Q Consensus 173 ~t~~~L~~~f--~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~-a~~al~ 221 (398)
.+..+|++.| +.|..+. ++...++ ..+.|++.|+|.+.-+ -..|+.
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4567899977 8998765 5555553 2378899999987643 334443
No 439
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=21.83 E-value=2.5e+02 Score=20.87 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=33.9
Q ss_pred ceeecCCCCCCCHHHHHHHHh-------hcCCeeEEEEeecCCCCCcceEE-EEEeCCHHHHHHH
Q psy6490 251 KIFVGGVSQDTSAEEVKAYFS-------QFGKVEETVMLMDQQTKRHRGFG-FVTFENEEVVDHI 307 (398)
Q Consensus 251 ~l~V~nLp~~~tee~L~~~F~-------~~G~i~~v~i~~~~~~~~~kg~a-fV~F~~~eaa~a~ 307 (398)
.|.+-.|..+++++++.++.+ ....|+++.+-++......--++ +++|+|.++.++-
T Consensus 23 HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~Y 87 (120)
T 3bde_A 23 HTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTRY 87 (120)
T ss_dssp EEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHHH
Confidence 344445777777776555543 35568888877764321112234 4689998877653
No 440
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=21.61 E-value=2.5e+02 Score=20.70 Aligned_cols=56 Identities=2% Similarity=-0.016 Sum_probs=34.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhc-------CCCEEEEEEeeCCCCCCcccE---EEEEEcChHhHHH
Q psy6490 162 AKLFVGGLSWQTSSEKLREYFGM-------FGAVTDVLIMKDPITQRSRGF---GFITFAEPETVEK 218 (398)
Q Consensus 162 ~~l~v~nLp~~~t~~~L~~~f~~-------~G~i~~~~~~~~~~~~~~~g~---afV~f~~~e~a~~ 218 (398)
+.|.+=.|..+++++++.++.+. ...|+++.+-.+.. +..+|| .+++|.+.++.+.
T Consensus 23 ~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 23 RHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 33444458888888876655532 44678887777653 444555 4456777776654
No 441
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=21.54 E-value=96 Score=29.16 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCC----CHHHHHHHHhcCCCEEEEEEeeCCCCCCcccEEEEEEcChHhHHHHHhCCCcccCCcc
Q psy6490 162 AKLFVGGLSWQT----SSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHTLDGKK 231 (398)
Q Consensus 162 ~~l~v~nLp~~~----t~~~L~~~f~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~~~~~~~g~~ 231 (398)
.--+||||..-. -...+.++.++||.|..+++- +.-+|...+.+.++.++..+...+.++.
T Consensus 15 ~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~~~~~f~~rp 79 (494)
T 3swz_A 15 SLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIKKGKDFSGRP 79 (494)
T ss_dssp CCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTTTTTTTBBCC
T ss_pred CCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 344688876432 135677888899999888772 2456778899999999875555555443
No 442
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=21.52 E-value=56 Score=16.86 Aligned_cols=13 Identities=15% Similarity=0.606 Sum_probs=10.5
Q ss_pred CHHHHHHHHhhcC
Q psy6490 262 SAEEVKAYFSQFG 274 (398)
Q Consensus 262 tee~L~~~F~~~G 274 (398)
+|.+|+++.++|-
T Consensus 14 nekelrdfiekfk 26 (28)
T 1fme_A 14 NEKELRDFIEKFK 26 (28)
T ss_dssp CHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHhc
Confidence 5889999988873
No 443
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.28 E-value=43 Score=22.30 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=8.8
Q ss_pred ceEEEEEeCC
Q psy6490 291 RGFGFVTFEN 300 (398)
Q Consensus 291 kg~afV~F~~ 300 (398)
+|.|+|+|+|
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 6799999987
No 444
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=21.12 E-value=1.9e+02 Score=21.53 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=35.7
Q ss_pred EEEEcChHhHHHHHhCCCcccCCcccCCCCCCCCCCCccCccccceeecCC----CC--CCCHHHHHHHHhhcCCeeEEE
Q psy6490 207 FITFAEPETVEKVLKVPIHTLDGKKIDPKHATPKNRPKIGNRTKKIFVGGV----SQ--DTSAEEVKAYFSQFGKVEETV 280 (398)
Q Consensus 207 fV~f~~~e~a~~al~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~V~nL----p~--~~tee~L~~~F~~~G~i~~v~ 280 (398)
||.+--.++...++. .+.|..+.+.+..-+-. ....++|--| +. -.+.+||.++|++ |.|.-.+
T Consensus 41 ~iSaIGH~sTA~lls----~Llg~~ip~NR~~i~~~-----~GD~alv~~L~~Rl~EG~vl~~eEi~k~~e~-g~i~~~~ 110 (114)
T 2x4i_A 41 IINSIGHDSTIQLIN----SLCGTTFQKNRVEIKLE-----KEDKLYVVQISQRLEEGKILTLEEILKLYES-GKVQFFE 110 (114)
T ss_dssp EEECCCCHHHHHHHH----HHHCCCCCCCCCCCCBC-----TTCEEEEEEEC-------CCCHHHHHHHHHH-TCEEEEE
T ss_pred eEEeeccHHHHHHHH----HHhCCCccccceeEEec-----CCCEEEEEEecccCCCCccCCHHHHHHHHHc-CceEEEE
Confidence 666666677777765 23333333333222211 1222333223 32 2467999999988 8888666
Q ss_pred Eee
Q psy6490 281 MLM 283 (398)
Q Consensus 281 i~~ 283 (398)
++.
T Consensus 111 ~~~ 113 (114)
T 2x4i_A 111 IIV 113 (114)
T ss_dssp EEC
T ss_pred Eee
Confidence 543
No 445
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.11 E-value=52 Score=26.70 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=5.5
Q ss_pred CCHHHHHHHHh
Q psy6490 173 TSSEKLREYFG 183 (398)
Q Consensus 173 ~t~~~L~~~f~ 183 (398)
.|.++|+.+..
T Consensus 35 ~sR~~IRkLIk 45 (176)
T 3jyw_P 35 NSRNAIRKLVK 45 (176)
T ss_dssp CSHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 44455555554
No 446
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=21.09 E-value=32 Score=23.56 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=8.4
Q ss_pred ceEEEEEeCC
Q psy6490 291 RGFGFVTFEN 300 (398)
Q Consensus 291 kg~afV~F~~ 300 (398)
++.|||+|+|
T Consensus 54 ~e~ClV~F~D 63 (79)
T 2m0o_A 54 REVCLVQFED 63 (79)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEEEcC
Confidence 5589999987
No 447
>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4
Probab=20.07 E-value=2.3e+02 Score=20.52 Aligned_cols=70 Identities=21% Similarity=0.212 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHh----hcCCeeEEEEeecC-CC-CCcceE---EEEEeCCHHHHHHHHH--H------CCceeCCEE
Q psy6490 257 VSQDTSAEEVKAYFS----QFGKVEETVMLMDQ-QT-KRHRGF---GFVTFENEEVVDHICE--I------HFHMIKNKK 319 (398)
Q Consensus 257 Lp~~~tee~L~~~F~----~~G~i~~v~i~~~~-~~-~~~kg~---afV~F~~~eaa~a~~~--l------~~~~i~g~~ 319 (398)
|..++..+++.+.+. +...|+++.+-++. .. +..+|| .+++|+|.++.++-.. . .-..+..+.
T Consensus 14 lk~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~~~~~~~~ 93 (111)
T 1rjj_A 14 FKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKI 93 (111)
T ss_dssp CSSCCCHHHHHHHHHHHHGGGGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHHHHHHHHHHHTCSEE
T ss_pred ECCcchHHHHHHHHHHHHhcCCceEEEEEcCCCCCccccCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHHhcce
Confidence 444445555555544 35567888877764 32 344554 3568999887765432 0 012344566
Q ss_pred EEEEecC
Q psy6490 320 VECKKAQ 326 (398)
Q Consensus 320 i~v~~a~ 326 (398)
+.+.|..
T Consensus 94 ~v~D~~~ 100 (111)
T 1rjj_A 94 VLLDFPV 100 (111)
T ss_dssp EEEEEEE
T ss_pred EEEEeEc
Confidence 7777743
Done!