RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6490
(398 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 121 bits (304), Expect = 1e-33
Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 3/170 (1%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
KLF+GGLS++T+ E LR +F +G +TD ++M+DP T+RSRGFGF+T+A E V+ +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 223 PIHTLDGKKIDPKHATPKNRPKIGN---RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEET 279
H +DG+ ++PK A + + KKIFVGG+ +DT ++ YF Q+GK+E
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 127
Query: 280 VMLMDQQTKRHRGFGFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPKE 329
++ D+ + + RGF FVTF++ + VD I +H + E +KA K+
Sbjct: 128 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 177
Score = 66.2 bits (160), Expect = 2e-13
Identities = 30/79 (37%), Positives = 50/79 (63%)
Query: 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE 309
+K+F+GG+S +T+ E ++++F Q+G + + V++ D TKR RGFGFVT+ E VD
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 310 IHFHMIKNKKVECKKAQPK 328
H + + VE K+A +
Sbjct: 67 ARPHKVDGRVVEPKRAVSR 85
Score = 65.8 bits (159), Expect = 3e-13
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETV 216
T K+FVGG+ T LR+YF +G + + IM D + + RGF F+TF + ++V
Sbjct: 93 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 152
Query: 217 EKVLKVPIHTLDGKKIDPKHATPKN 241
+K++ HT++G + + A K
Sbjct: 153 DKIVIQKYHTVNGHNCEVRKALSKQ 177
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 85.0 bits (210), Expect = 2e-21
Identities = 35/75 (46%), Positives = 46/75 (61%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
K+FVGGLS T EK+REYFG FG V + + D T + RGF FITF E E V+K+++
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 223 PIHTLDGKKIDPKHA 237
H + K + K A
Sbjct: 61 KYHNVGLSKCEIKVA 75
Score = 83.1 bits (205), Expect = 1e-20
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310
KIFVGG+S DT E+++ YF FG+VE + MD +T + RGF F+TF+ EE V I E
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 311 HFHMIKNKKVECKKA 325
+H + K E K A
Sbjct: 61 KYHNVGLSKCEIKVA 75
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 84.3 bits (208), Expect = 4e-21
Identities = 46/75 (61%), Positives = 57/75 (76%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
K+F+GGLSWQT+ E LREYFG FG V + L+M+DP+T+RSRGFGF+TF + V+KVL
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 223 PIHTLDGKKIDPKHA 237
H LD K IDPK A
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 79.3 bits (195), Expect = 3e-19
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310
K+F+GG+S T+ E ++ YF QFG+V+E +++ D TKR RGFGFVTF ++ VD +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 311 HFHMIKNKKVECKKA 325
H + +K ++ K A
Sbjct: 62 SRHELDSKTIDPKVA 76
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 83.5 bits (206), Expect = 9e-21
Identities = 41/75 (54%), Positives = 53/75 (70%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
K+F+GGLSW T+ + L++YF FG V D + DPIT RSRGFGF+ F E E+V+KV+
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 223 PIHTLDGKKIDPKHA 237
H L+GK IDPK A
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 76.2 bits (187), Expect = 4e-18
Identities = 31/75 (41%), Positives = 50/75 (66%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310
K+F+GG+S DT+ +++K YFS+FG+V + + +D T R RGFGFV F+ E VD + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 311 HFHMIKNKKVECKKA 325
H + K ++ K+A
Sbjct: 61 KEHKLNGKVIDPKRA 75
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 83.5 bits (206), Expect = 1e-20
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVL 220
++ L V GL W+T+ + L+EYF FG V V + KD T S+GFGF+ F E ET KV+
Sbjct: 8 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 67
Query: 221 KVPIHTLDGKKIDPKHATPK 240
H +DG+ D K K
Sbjct: 68 SQR-HMIDGRWCDCKLPNSK 86
Score = 80.4 bits (198), Expect = 2e-19
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHI 307
+T + V G+ T+ +++K YFS FG+V + D +T +GFGFV F E +
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66
Query: 308 CEIHFHMIKNKKVECKKAQPKE 329
HMI + +CK K+
Sbjct: 67 MS-QRHMIDGRWCDCKLPNSKQ 87
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 80.5 bits (198), Expect = 2e-19
Identities = 34/78 (43%), Positives = 56/78 (71%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
KLF+GGLS++T+ E LR Y+ +G +TD ++M+DP ++RSRGFGF+TF+ V+ +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 223 PIHTLDGKKIDPKHATPK 240
H++DG+ ++PK A +
Sbjct: 82 RPHSIDGRVVEPKRAVAR 99
Score = 80.5 bits (198), Expect = 2e-19
Identities = 32/91 (35%), Positives = 55/91 (60%)
Query: 239 PKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTF 298
+ + + + +K+F+GG+S +T+ E ++ Y+ Q+GK+ + V++ D +KR RGFGFVTF
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69
Query: 299 ENEEVVDHICEIHFHMIKNKKVECKKAQPKE 329
+ VD H I + VE K+A +E
Sbjct: 70 SSMAEVDAAMAARPHSIDGRVVEPKRAVARE 100
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 78.9 bits (194), Expect = 5e-19
Identities = 36/75 (48%), Positives = 55/75 (73%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
KLF+GGLS++T+ E LR +F +G +TD ++M+DP T+RSRGFGF+T+A E V+ +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 223 PIHTLDGKKIDPKHA 237
H +DG+ ++PK A
Sbjct: 68 RPHKVDGRVVEPKRA 82
Score = 77.4 bits (190), Expect = 2e-18
Identities = 30/77 (38%), Positives = 49/77 (63%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC 308
+K+F+GG+S +T+ E ++++F Q+G + + V++ D TKR RGFGFVT+ E VD
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 65
Query: 309 EIHFHMIKNKKVECKKA 325
H + + VE K+A
Sbjct: 66 NARPHKVDGRVVEPKRA 82
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 78.2 bits (192), Expect = 1e-18
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVE 217
D T K+FVGGL + T+ LR+YF FG + + +++ D T +SRG+GF+T A+ E
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 218 KVLKVPIHTLDGKKIDPKHATPKNRPK 244
+ K P +DG+K + A +P+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93
Score = 62.1 bits (150), Expect = 8e-13
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC 308
KIFVGG+ T+ ++ YF FG +EE V++ D+QT + RG+GFVT + + C
Sbjct: 10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 309 EIHFHMIKNKKVECKKAQPK 328
+ +I +K A
Sbjct: 70 KDPNPIIDGRKANVNLAYLG 89
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 78.1 bits (192), Expect = 1e-18
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 144 KSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSR 203
KS + ++ + +F L+ + L ++F G V DV I+ D ++RS+
Sbjct: 1 KSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 60
Query: 204 GFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATP-KNR 242
G ++ F E ++V + + L G I + + KNR
Sbjct: 61 GIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNR 100
Score = 73.1 bits (179), Expect = 8e-17
Identities = 15/96 (15%), Positives = 39/96 (40%)
Query: 234 PKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGF 293
P N + +F ++ +++ +FS GKV + ++ D+ ++R +G
Sbjct: 3 PVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 62
Query: 294 GFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPKE 329
+V F + V + + + + +Q ++
Sbjct: 63 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK 98
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 76.1 bits (187), Expect = 6e-18
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDP-ITQRSRGFGFITFAEPETV 216
T++K+ V + +Q + ++RE F FG + V + K T RGFGF+ F +
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 64
Query: 217 EKVLKVPIH--TLDGKKIDPKHATPKNRPK 244
+K H L G+++ + A + +
Sbjct: 65 KKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
Score = 72.7 bits (178), Expect = 9e-17
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQ-QTKRHRGFGFVTFENEEVVD 305
T KI V + + E++ FS FG+++ + T HRGFGFV F ++
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65
Query: 306 HICE--IHFHMIKNKKVECKKAQPKEAVQ 332
H + +++ + A + VQ
Sbjct: 66 KAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 74.4 bits (182), Expect = 2e-17
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICE 309
KKIFVGG+ +DT ++ YF Q+GK+E ++ D+ + + RGF FVTF++ + VD I
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 62
Query: 310 IHFHMIKNKKVECKKA 325
+H + E +KA
Sbjct: 63 QKYHTVNGHNCEVRKA 78
Score = 72.8 bits (178), Expect = 7e-17
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKV 219
T K+FVGG+ T LR+YF +G + + IM D + + RGF F+TF + ++V+K+
Sbjct: 1 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 60
Query: 220 LKVPIHTLDGKKIDPKHA 237
+ HT++G + + A
Sbjct: 61 VIQKYHTVNGHNCEVRKA 78
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 72.8 bits (178), Expect = 6e-17
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
K+FVGGLS T+ E ++ YF FG V D ++M D T R RGFGF+TF + VEKV ++
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 223 PIHTLDGKKIDPKHA 237
H ++ K ++ K A
Sbjct: 61 HFHEINNKMVECKKA 75
Score = 72.1 bits (176), Expect = 1e-16
Identities = 48/75 (64%), Positives = 63/75 (84%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310
KIFVGG+S +T+ E+VK YF QFGKV++ +++ D+ T RHRGFGFVTFE+E++V+ +CEI
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
Query: 311 HFHMIKNKKVECKKA 325
HFH I NK VECKKA
Sbjct: 61 HFHEINNKMVECKKA 75
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 70.3 bits (172), Expect = 5e-16
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221
A L+VG L + L E F G + + + +D IT+RS G+ ++ F +P E+ L
Sbjct: 1 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 60
Query: 222 VPIHTLDGKKID 233
T++ I
Sbjct: 61 ----TMNFDVIK 68
Score = 66.9 bits (163), Expect = 8e-15
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICE 309
++VG + D + + FS G + + D T+R G+ +V F+ + +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 310 IHFHMIKNKKVECKKAQ 326
++F +IK K V +Q
Sbjct: 62 MNFDVIKGKPVRIMWSQ 78
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 70.1 bits (171), Expect = 8e-16
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 154 PTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEP 213
P + A ++VGGL + S L E F G V + + KD +T + +G+GF+ F
Sbjct: 2 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 61
Query: 214 ETVEKVLK-VPIHTLDGKKIDPKHATPKNR 242
E + +K + + L GK I A+ N+
Sbjct: 62 EDADYAIKIMDMIKLYGKPIRVNKASAHNK 91
Score = 67.0 bits (163), Expect = 1e-14
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH 306
N+ ++VGG+ + S + F Q G V T M D+ T +H+G+GFV F +EE D+
Sbjct: 7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 66
Query: 307 -ICEIHFHMIKNKKVECKKAQPKE 329
I + + K + KA
Sbjct: 67 AIKIMDMIKLYGKPIRVNKASAHN 90
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 70.3 bits (172), Expect = 1e-15
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
Query: 147 GDSGRSTPTGDDPTSAKLFVGGLS-WQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGF 205
G SG S T ++++F+G L+ + F +G + + +GF
Sbjct: 1 GSSGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGF 52
Query: 206 GFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRPKIG 246
F+ + + + G+ +D A + G
Sbjct: 53 AFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRSG 94
Score = 62.2 bits (151), Expect = 7e-13
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 241 NRPKIGNRTKKIFVGGVSQD-TSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFE 299
+ + ++F+G ++ +V+A FS++GK+ H+GF FV +
Sbjct: 7 GKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVG--------CSVHKGFAFVQYV 58
Query: 300 NEEVVDH-ICEIHFHMIKNKKVECKKAQPKE 329
NE + MI + ++ A +
Sbjct: 59 NERNARAAVAGEDGRMIAGQVLDINLAAEPK 89
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 69.2 bits (169), Expect = 2e-15
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 156 GDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPET 215
G+ L+V L + ++L FG +G++ I++D +T R RG F+ + + E
Sbjct: 1 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 60
Query: 216 VEKVLKVPIHTLDGKKID 233
++ I L+ +
Sbjct: 61 AQEA----ISALNNVIPE 74
Score = 60.7 bits (147), Expect = 1e-12
Identities = 14/81 (17%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH- 306
+ ++V + + + +++ F ++G + + +L D+ T R RG FV + E
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 307 ICEIHFHMIK--NKKVECKKA 325
I ++ + + ++ + + A
Sbjct: 65 ISALNNVIPEGGSQPLSVRLA 85
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 69.0 bits (168), Expect = 3e-15
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 145 SSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRG 204
SSG SG P P F+G L + + E ++E+F L + +R +G
Sbjct: 2 SSGSSGSRLP--KSPPY-TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKG 58
Query: 205 FGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATPKNRPKIGNRT 249
FG+ F + +++ L + +L K+I A G +
Sbjct: 59 FGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQDKDSGPSS 103
Score = 57.8 bits (139), Expect = 3e-11
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 237 ATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFV 296
++ PK T F+G + D + E +K +F + +R +GFG+
Sbjct: 5 SSGSRLPKSPPYT--AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYA 62
Query: 297 TFENEEVVDHICEIHFHMIKNKKVECKKAQPKE 329
FE+ + + ++ + NK++ A +
Sbjct: 63 EFEDLDSLLSALSLNEESLGNKRIRVDVADQAQ 95
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 68.1 bits (166), Expect = 4e-15
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-IC 308
+ ++VGG++++ + + A F FG + + + +D +T++HRGF FV FE E I
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 309 EIHFHMIKNKKVECKKAQPKE 329
++ + + + A+P
Sbjct: 66 NMNESELFGRTIRVNLAKPMR 86
Score = 66.2 bits (161), Expect = 2e-14
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEK 218
T L+VGGL+ + + L F FG +TD+ I D T++ RGF F+ F E
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 219 VLKVP-IHTLDGKKIDPKHATPKNRPK 244
+ L G+ I A P R K
Sbjct: 63 AIDNMNESELFGRTIRVNLAKPM-RIK 88
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 67.7 bits (165), Expect = 5e-15
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVL 220
+ KLF+GGL + ++++E FG + ++KD T S+G+ F + + ++ +
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 60
Query: 221 KVPI-HTLDGKKIDPKHATPKNR 242
L KK+ + A+ +
Sbjct: 61 AGLNGMQLGDKKLLVQRASVGAK 83
Score = 63.9 bits (155), Expect = 1e-13
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICE 309
K+F+GG+ + ++VK + FG ++ ++ D T +G+ F + + V D I
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 310 IHFHMIKNKKVECKKAQPK 328
++ + +KK+ ++A
Sbjct: 63 LNGMQLGDKKLLVQRASVG 81
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 67.5 bits (164), Expect = 6e-15
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 164 LFVGGLSWQTSSEKLREYFGMFGAV-TDVLIMKDPITQRSRGFGFITFAEPETVEKVLK- 221
+F+G L + + L + F FG + IM+DP T S+G+ FI FA + + ++
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 222 VPIHTLDGKKIDPKHATPKN 241
+ L + I +A K+
Sbjct: 61 MNGQYLCNRPITVSYAFKKD 80
Score = 66.7 bits (162), Expect = 1e-14
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 252 IFVGGVSQDTSAEEVKAYFSQFGKVEETVMLM-DQQTKRHRGFGFVTFENEEVVDH-ICE 309
IF+G + + + + FS FG + +T +M D T +G+ F+ F + + D I
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 310 IHFHMIKNKKVECKKAQPKE 329
++ + N+ + A K+
Sbjct: 61 MNGQYLCNRPITVSYAFKKD 80
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 67.7 bits (165), Expect = 7e-15
Identities = 17/87 (19%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 244 KIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEV 303
K+ ++ ++VG +S T+ E++ FS+ G +++ +M +D+ K GF FV + +
Sbjct: 2 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD 61
Query: 304 VDH-ICEIHFHMIKNKKVECKKAQPKE 329
++ + I+ + ++ + +
Sbjct: 62 AENAMRYINGTRLDDRIIRTDWDAGFK 88
Score = 64.6 bits (157), Expect = 8e-14
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVL 220
S L+VG LS+ T+ E++ E F G + +++ D + + + GF F+ + E +
Sbjct: 7 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 66
Query: 221 KVPIHTLDGKKID 233
+ ++G ++D
Sbjct: 67 R----YINGTRLD 75
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 66.6 bits (162), Expect = 2e-14
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVE 217
S+ +FVG + + ++LRE+F +G V DV I + R F F+TFA+ + +
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP-----KPFRAFAFVTFADDQIAQ 56
Query: 218 KVLKVPIHTLDGKKIDPKHATPKN 241
+ + G + +A PK+
Sbjct: 57 SLCGED-LIIKGISVHISNAEPKH 79
Score = 62.0 bits (150), Expect = 5e-13
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC 308
+ +FVG + D + +E++ +FSQ+G V + + R F FVTF ++++ +C
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK-----PFRAFAFVTFADDQIAQSLC 59
Query: 309 EIHFHMIKNKKVECKKAQPKE 329
+IK V A+PK
Sbjct: 60 G-EDLIIKGISVHISNAEPKH 79
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 65.2 bits (158), Expect = 4e-14
Identities = 27/80 (33%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICE 309
K+FVGG+S DT+ + ++ FS++G++ E V++ D++T+R RGFGFVTFEN + +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 310 IHFHMIKNKKVECKKAQPKE 329
++ + +++ +A
Sbjct: 67 MNGKSVDGRQIRVDQAGKSS 86
Score = 63.6 bits (154), Expect = 1e-13
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVL 220
KLFVGGLS+ T+ + L + F +G +++V+++KD TQRSRGFGF+TF + + +
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 221 K-VPIHTLDGKKIDPKHATPKNRPK 244
+ ++DG++I A + +
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDNR 89
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 65.1 bits (158), Expect = 5e-14
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 164 LFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDP---ITQRSRGFGFITFAEPETVEKVL 220
LF+ L++ T+ E L+ F GA+ I K S GFGF+ + +PE +K L
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 221 KVPI-HTLDGKKIDPKHATPKNRP 243
K HT+DG K++ + + +P
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKP 84
Score = 64.3 bits (156), Expect = 9e-14
Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 252 IFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQ---QTKRHRGFGFVTFENEEVVDH-I 307
+F+ ++ T+ E +K FS+ G ++ + + GFGFV ++ E +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 308 CEIHFHMIKNKKVECKKAQPKE 329
++ H + K+E + ++
Sbjct: 61 KQLQGHTVDGHKLEVRISERAT 82
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 65.1 bits (158), Expect = 7e-14
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 145 SSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRG 204
+ G + + P A LF+ L + + L + F FG V + D T S+
Sbjct: 2 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 61
Query: 205 FGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRPK 244
FGF+++ P + + ++ + + K++ + KN K
Sbjct: 62 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 102
Score = 55.9 bits (134), Expect = 1e-10
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 235 KHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFG 294
+ K G +F+ + Q+ +++ F FG V + +D+QT + FG
Sbjct: 4 QSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFG 63
Query: 295 FVTFENEEVVDH-ICEIHFHMIKNKKVECKKAQPKE 329
FV+++N I ++ I K+++ + + K
Sbjct: 64 FVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 99
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 64.3 bits (156), Expect = 7e-14
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221
A L+V GL + ++L + F +G + I+ D +T SRG GFI F + E+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA-- 64
Query: 222 VPIHTLDGKKIDPKH 236
I L+G+K
Sbjct: 65 --IKGLNGQKPSGAT 77
Score = 62.0 bits (150), Expect = 6e-13
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH- 306
R ++V G+ + + +E++ FSQ+G++ + +L+DQ T RG GF+ F+ +
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Query: 307 ICEIHFHMI--KNKKVECKKA 325
I ++ + + K A
Sbjct: 65 IKGLNGQKPSGATEPITVKFA 85
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 64.3 bits (156), Expect = 1e-13
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 145 SSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRG 204
SSG+S T +L V + ++ LR+ FG FG + DV I+ + + S+G
Sbjct: 1 SSGNSE------SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKG 52
Query: 205 FGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNR 242
FGF+TF ++ + + ++G+KI+ +AT +
Sbjct: 53 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 91
Score = 58.5 bits (141), Expect = 1e-11
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-I 307
K++ V + +++ F QFGK+ + ++ +++ + FGFVTFEN D
Sbjct: 11 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG--FGFVTFENSADADRAR 68
Query: 308 CEIHFHMIKNKKVECKKAQPK 328
++H +++ +K+E A +
Sbjct: 69 EKLHGTVVEGRKIEVNNATAR 89
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 64.0 bits (155), Expect = 2e-13
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 145 SSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRG 204
SSG SG S +LFV LS+ +S E L + F +G ++++ D +T++ +G
Sbjct: 2 SSGSSG----------SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKG 51
Query: 205 FGFITFAEPETVEKVLK-VPIHTLDGKKIDPKHATPKNRPK 244
F F+TF PE K V G+ + +T K
Sbjct: 52 FAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92
Score = 57.0 bits (137), Expect = 4e-11
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-I 307
+ ++FV +S +S E+++ FS +G + E +D TK+ +GF FVTF E
Sbjct: 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67
Query: 308 CEIHFHMIKNKKVECKKAQPKE 329
E+ + + + + + K+
Sbjct: 68 AEVDGQVFQGRMLHVLPSTIKK 89
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 63.6 bits (154), Expect = 2e-13
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTD--VLIMKDPITQRSRGFGFITFAEPETVEKVL 220
+LF+GG+ E++ E ++ ++RGF F+ +
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 221 KV---PIHTLDGKKIDPKHATPKNRPK 244
+ L G +I A P+
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEIDVD 89
Score = 62.4 bits (151), Expect = 6e-13
Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETV--MLMDQQTKRHRGFGFVTFENEEVVDHIC 308
++F+GG+ + EE+ ++ + V ++RGF FV +E+
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 309 EI---HFHMIKNKKVECKKAQPKEAVQANLL 336
+ ++ A+P+ V +++
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEIDVDEDVM 93
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 62.8 bits (152), Expect = 3e-13
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETV 216
+ + L V GLS T+ LRE F +G + DV I+ D ++RSRGF F+ F +
Sbjct: 5 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 64
Query: 217 EKVLKVPIHTLDGKKIDPK 235
++ +G ++D +
Sbjct: 65 KEA----KERANGMELDGR 79
Score = 58.9 bits (142), Expect = 7e-12
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 246 GNR-----TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN 300
GNR + V G+S T+ +++ FS++G + + ++ DQQ++R RGF FV FEN
Sbjct: 1 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 60
Query: 301 EEVVDH-ICEIHFHMIKNKKVE 321
+ + + +++
Sbjct: 61 VDDAKEAKERANGMELDGRRIR 82
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 60.9 bits (147), Expect = 1e-12
Identities = 9/86 (10%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLI-----MKDPITQRSRGFGFITFAEPETVE 217
+L+VG + + + E + ++F + + + + + F F+ F +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 218 KVLKVPIHTLDGKKIDPKHATPKNRP 243
+ + G+ + +
Sbjct: 63 QAMAFDGIIFQGQSLKIRRPHDYQPL 88
Score = 59.4 bits (143), Expect = 5e-12
Identities = 9/85 (10%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 250 KKIFVGGVSQDTSAEEVKAYFSQFGKVEETV-----MLMDQQTKRHRGFGFVTFENEEVV 304
++++VG + + E + +F+ ++ ++ Q + + F F+ F + +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 305 DHICEIHFHMIKNKKVECKKAQPKE 329
+ + + ++ ++ P +
Sbjct: 62 TQAMAFDGIIFQGQSLKIRR--PHD 84
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 60.8 bits (147), Expect = 1e-12
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 243 PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE 302
+ K ++V + TS E ++ F+ ++ K+ R + FV F N E
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA------VERVKKIRDYAFVHFSNRE 55
Query: 303 VVDH-ICEIHFHMIKNKKVECKKAQPKE 329
+ ++ ++ +E A+P +
Sbjct: 56 DAVEAMKALNGKVLDGSPIEVTLAKPVD 83
Score = 50.4 bits (120), Expect = 6e-09
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK- 221
L+V L TS E + + F ++ R + F+ F+ E + +K
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPG------AVERVKKIRDYAFVHFSNREDAVEAMKA 63
Query: 222 VPIHTLDGKKIDPKHATPKNR 242
+ LDG I+ A P ++
Sbjct: 64 LNGKVLDGSPIEVTLAKPVDK 84
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 61.4 bits (148), Expect = 2e-12
Identities = 9/94 (9%), Positives = 31/94 (32%), Gaps = 1/94 (1%)
Query: 156 GD-DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPE 214
GD + + + + + + ++ + + + + G + F +
Sbjct: 2 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNED 61
Query: 215 TVEKVLKVPIHTLDGKKIDPKHATPKNRPKIGNR 248
K ++ L+G++ T ++ +I
Sbjct: 62 DARKSERLHRKKLNGREAFVHVVTLEDMREIEKN 95
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 61.4 bits (148), Expect = 2e-12
Identities = 18/108 (16%), Positives = 39/108 (36%)
Query: 144 KSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSR 203
KS RS +++ GL ++ ++ + ++F V D + + ++
Sbjct: 1 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 60
Query: 204 GFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATPKNRPKIGNRTKK 251
G GF+ F + L + + I T K + + +K
Sbjct: 61 GEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRK 108
Score = 58.4 bits (140), Expect = 2e-11
Identities = 18/108 (16%), Positives = 40/108 (37%)
Query: 234 PKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGF 293
P +++ G+ + + V +F + VE+++ + + G
Sbjct: 3 PSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE 62
Query: 294 GFVTFENEEVVDHICEIHFHMIKNKKVECKKAQPKEAVQANLLVGKRV 341
GFV F NE H + N+ ++ K ++ ++ KR+
Sbjct: 63 GFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRL 110
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 60.3 bits (146), Expect = 2e-12
Identities = 11/77 (14%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICE 309
K+ V + S +++ F++FG +++ + ++ R G V FE + + +
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKK-AAVHYDRSGRSLGTADVHFERKADALKAMKQ 60
Query: 310 IHFHMIKNKKVECKKAQ 326
+ + + + +
Sbjct: 61 YNGVPLDGRPMNIQLVT 77
Score = 59.9 bits (145), Expect = 2e-12
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
KL V L + S ++E F FG + + D + RS G + F K +K
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMK- 59
Query: 223 PIHTLDGKKID 233
+G +D
Sbjct: 60 ---QYNGVPLD 67
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 60.4 bits (146), Expect = 2e-12
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICE 309
+ V + QD + E+ A F G + ++ D +T G+ FV F +E I
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 310 IHFHMIKNKKVECKKAQP 327
++ ++NK+++ A+P
Sbjct: 64 LNGITVRNKRLKVSYARP 81
Score = 59.2 bits (143), Expect = 5e-12
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 160 TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKV 219
++ L V L + +L F G + IM+D T S G+ F+ F ++
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 220 LKVPI-HTLDGKKIDPKHATP 239
+KV T+ K++ +A P
Sbjct: 61 IKVLNGITVRNKRLKVSYARP 81
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 60.1 bits (145), Expect = 3e-12
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 154 PTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEP 213
P +A + V LS T L+E F FG+++ + + KD T +S+GF FI+F
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 214 ETVEKVLK-VPIHTLDGKKIDPKHATPKN 241
E + + V D ++ + A P
Sbjct: 61 EDAARAIAGVSGFGYDHLILNVEWAKPST 89
Score = 59.7 bits (144), Expect = 4e-12
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 241 NRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN 300
NR N T I V +S+DT +++ F FG + + D+ T + +GF F++F
Sbjct: 2 NRRADDNAT--IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 59
Query: 301 EEVVDH-ICEIHFHMIKNKKVECKKAQPKE 329
E I + + + + A+P
Sbjct: 60 REDAARAIAGVSGFGYDHLILNVEWAKPST 89
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 59.7 bits (144), Expect = 4e-12
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 145 SSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRG 204
S G R P G++ +++VG L ++ + + F +GA+ D+ + +
Sbjct: 1 SGGGVIRG-PAGNNDC--RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPP 54
Query: 205 FGFITFAEPETVEKVLKVPI-HTLDGKKIDPKHATPK 240
F F+ F +P E + + DG ++ +
Sbjct: 55 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 91
Score = 59.3 bits (143), Expect = 6e-12
Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 242 RPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENE 301
R GN +I+VG + D ++++ F ++G + + + + F FV FE+
Sbjct: 7 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG---GPPFAFVEFEDP 63
Query: 302 EVVDH-ICEIHFHMIKNKKVECKKAQPK 328
+ + + ++ + +
Sbjct: 64 RDAEDAVYGRDGYDYDGYRLRVEFPRSG 91
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 59.3 bits (143), Expect = 4e-12
Identities = 9/80 (11%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 154 PTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEP 213
+ P + V + + S +++ ++F + + + +K G + F
Sbjct: 2 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 61
Query: 214 ETVEKVLKVPIHTLDGKKID 233
+ + L+ + I
Sbjct: 62 DEATAAVI----DLNDRPIG 77
Score = 55.1 bits (132), Expect = 2e-10
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICE 309
I V + S +E+ +F + + +V L + G V FE+ + + +
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 70
Query: 310 IHFHMIKNKKVECKKA 325
++ I ++KV+
Sbjct: 71 LNDRPIGSRKVKLVLG 86
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 59.3 bits (143), Expect = 5e-12
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310
K+++G +S +A++++ F + Q G+ FV + ++ E
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLP------LAGQVLLKSGYAFVDYPDQNWAIRAIET 56
Query: 311 --HFHMIKNKKVECKKAQPKE 329
+ K +E + K+
Sbjct: 57 LSGKVELHGKIMEVDYSVSKK 77
Score = 58.2 bits (140), Expect = 1e-11
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
KL++G LS +++ LR+ FG ++ G+ F+ + + + ++
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK------SGYAFVDYPDQNWAIRAIET 56
Query: 223 --PIHTLDGKKIDPKHATPK 240
L GK ++ ++ K
Sbjct: 57 LSGKVELHGKIMEVDYSVSK 76
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 59.5 bits (143), Expect = 6e-12
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 241 NRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN 300
N P N + + G+ S EE+ +FS V + L R G FV F +
Sbjct: 8 NSPDTAN-DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFAS 66
Query: 301 EEVVDHICEIHFHMIKNKKVECKKAQPKEAVQA 333
+E+ + + H I ++ +E K+ E +
Sbjct: 67 QEIAEKALKKHKERIGHRYIEIFKSSRAEVRTS 99
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 59.4 bits (143), Expect = 6e-12
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETV 216
D +F+ LS+ + E L E FG + V ++ P T+ S+G F F E
Sbjct: 4 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAA 63
Query: 217 EKVLKVPIH-------TLDGKKIDPKHATPKNR 242
+K L LDG+++ A ++
Sbjct: 64 QKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 96
Score = 53.7 bits (128), Expect = 7e-10
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 243 PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE 302
P K +F+ +S D+ E + QFG ++ +++ T+ +G F F +E
Sbjct: 2 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 61
Query: 303 VVD-------HICEIHFHMIKNKKVECKKAQPKE 329
E + ++++ A ++
Sbjct: 62 AAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 95
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 59.0 bits (142), Expect = 9e-12
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLI--------MKDPITQRSRGFGFI 208
+D ++ ++V GL+ + + L ++F G V D T + +G +
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 209 TFAEPETVEKVLKVPI-HTLDGKKIDPKHATPK 240
++ +P T + ++ G K+ A K
Sbjct: 64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
Score = 56.7 bits (136), Expect = 6e-11
Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 243 PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVML--------MDQQTKRHRGFG 294
P + I+V G++ + +++ +F Q G V+ +D++T + +G
Sbjct: 2 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDA 61
Query: 295 FVTFENEEVVDH-ICEIHFHMIKNKKVECKKAQPKEAVQA 333
V++E+ + + K++ A+ K + +
Sbjct: 62 TVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNS 101
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 58.2 bits (140), Expect = 1e-11
Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH 306
++T + V + Q+ + EE ++ F G++E ++ D+ T + G+GFV + + + +
Sbjct: 1 SKTN-LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 59
Query: 307 -ICEIHFHMIKNKKVECKKAQP 327
I ++ ++ K ++ A+P
Sbjct: 60 AINTLNGLRLQTKTIKVSYARP 81
Score = 55.9 bits (134), Expect = 7e-11
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
L V L + E+ R FG G + +++D IT +S G+GF+ + +P+ EK +
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 223 PI-HTLDGKKIDPKHATP 239
L K I +A P
Sbjct: 64 LNGLRLQTKTIKVSYARP 81
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 58.5 bits (141), Expect = 1e-11
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 154 PTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEP 213
P+ +F+ L ++ L + F FG + ++ D S+G+GF+ F
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQ 58
Query: 214 ETVEKVLK-VPIHTLDGKKIDPKHATPK 240
E E+ ++ + L+ +K+ +
Sbjct: 59 EAAERAIEKMNGMLLNDRKVFVGRFKSR 86
Score = 54.7 bits (131), Expect = 2e-10
Identities = 16/84 (19%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH 306
+ IF+ + + + + FS FG + ++ D+ + +GFV FE +E +
Sbjct: 6 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQEAAER 63
Query: 307 -ICEIHFHMIKNKKVECKKAQPKE 329
I +++ ++ ++KV + + ++
Sbjct: 64 AIEKMNGMLLNDRKVFVGRFKSRK 87
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 57.9 bits (139), Expect = 1e-11
Identities = 8/78 (10%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICE 309
+++ + ++ V ++ L + R F ++ ++E + + +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 310 IHFHMIKNKKVECKKAQP 327
++ I+ + K + P
Sbjct: 63 LNGLKIEGYTLVTKVSNP 80
Score = 54.0 bits (129), Expect = 3e-10
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 162 AKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK 221
L++ + +R+ V + + SR F +I E ++
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 222 -VPIHTLDGKKIDPKHATP 239
+ ++G + K + P
Sbjct: 62 KLNGLKIEGYTLVTKVSNP 80
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 57.7 bits (139), Expect = 2e-11
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH 306
+ + ++VG +S+D + + FSQ G + M+ + + + FV F
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAA 63
Query: 307 -ICEIHFHMIKNKKVECKKAQPK 328
+ ++ I K+V+ A
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTP 86
Score = 56.6 bits (136), Expect = 5e-11
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETV 216
DD L+VG LS + + + F G ++ + + + F+ F E
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDA 61
Query: 217 EKVLK-VPIHTLDGKKIDPKHATPKNRPK 244
L + + GK++ AT + K
Sbjct: 62 AAALAAMNGRKILGKEVKVNWATTPSSQK 90
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 58.1 bits (140), Expect = 2e-11
Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-I 307
+ +++ + +AEE+ F ++G + + + RG +V +E+ +
Sbjct: 7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAC 63
Query: 308 CEIHFHMIKNKKVECKKAQPKEAVQ 332
+ + N+ + A Q
Sbjct: 64 DHLSGFNVCNRYLVVLYYNANRAFQ 88
Score = 56.6 bits (136), Expect = 9e-11
Identities = 14/117 (11%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEK 218
+ L++ L ++ ++E++ + FG +G + ++ T +RG ++ + + +
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDIFDAKN 61
Query: 219 VLK-VPIHTLDGKKIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFG 274
+ + + + + + + KK E++K ++G
Sbjct: 62 ACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKK-----------EEQLKLLKEKYG 107
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 56.8 bits (136), Expect = 3e-11
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
+ V L + K+ +YF G + V + F I FA + +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR--FARIEFARYDGALAAITK 59
Query: 223 PIHTLDGKKIDPKHAT 238
+ +I H T
Sbjct: 60 THKVVGQNEIIVSHLT 75
Score = 51.4 bits (122), Expect = 2e-09
Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310
+ V + + + +V YF G + + + F + F +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR--FARIEFARYDGALAAITK 59
Query: 311 HFHMIKNKKVECKKA 325
++ ++
Sbjct: 60 THKVVGQNEIIVSHL 74
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 56.3 bits (135), Expect = 1e-10
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 147 GDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFG 206
G SG S + T + + GL ++ + + +F + + + R G
Sbjct: 1 GSSGSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPD--GRVTGEA 58
Query: 207 FITFAEPETVEKVLKVPIHTLDGKKIDPKHATPKNRPKIGNRT 249
+ FA E + + + ++ + G +
Sbjct: 59 DVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGSGPSS 101
Score = 49.4 bits (117), Expect = 2e-08
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310
+ + G+ + ++ +FS V + R G V F E
Sbjct: 17 CVHMRGLPYRATENDIYNFFSPLNP--MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 74
Query: 311 HFHMIKNKKVECKKAQPKEAVQAN 334
++++ VE +
Sbjct: 75 DKANMQHRYVELFLNSTAGTSGSG 98
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 55.7 bits (133), Expect = 1e-10
Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 236 HATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGF 295
H + +F+G ++ + S E+K S+ + ++ +T +R FG+
Sbjct: 3 HMVEGSEST---TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV-RTGTNRKFGY 58
Query: 296 VTFENEEVVDHICEIHFHMIKNKKVECKKAQPK 328
V FE+ E ++ E+ + +++ +K + +
Sbjct: 59 VDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 91
Score = 54.6 bits (130), Expect = 2e-10
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 150 GRSTPTGDDP-TSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFI 208
G G + T LF+G L+ S +L+ A D+ ++ T +R FG++
Sbjct: 1 GSHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYV 59
Query: 209 TFAEPETVEKVLKVPIHTLDGKKIDPKHATPK 240
F E +EK L++ + G +I + +
Sbjct: 60 DFESAEDLEKALELTGLKVFGNEIKLEKPKGR 91
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 55.8 bits (134), Expect = 1e-10
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 157 DDPTSAK-------LFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFIT 209
+DP ++K L LS+ + ++L+E F I +S+G +I
Sbjct: 5 EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALE-----IRLVSQDGKSKGIAYIE 59
Query: 210 FAEPETVEKVLKVPI-HTLDGKKIDPKHATPK 240
F EK L+ +DG+ + + K
Sbjct: 60 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91
Score = 55.4 bits (133), Expect = 1e-10
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-I 307
+ + +S + + +E+K F + + Q + +G ++ F++E + +
Sbjct: 16 ARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKNL 70
Query: 308 CEIHFHMIKNKKVECKKAQPK 328
E I + V K
Sbjct: 71 EEKQGAEIDGRSVSLYYTGEK 91
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 55.1 bits (132), Expect = 1e-10
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 248 RTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHI 307
+ + +++ G D + +++K + G+V M K +G FV F++ E
Sbjct: 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTLHKAFKGSIFVVFDSIESAKKF 63
Query: 308 CEIHFHMIKNKKVECKKA 325
E K +
Sbjct: 64 VETPGQKYKETDLLILFK 81
Score = 53.6 bits (128), Expect = 5e-10
Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETV 216
+D + +++ G + + ++E+ G V ++ M+ + + +G F+ F E+
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNI-QMRRTLHKAFKGSIFVVFDSIESA 60
Query: 217 EKVLKVPIHTLDGKKIDPKHA 237
+K ++ P +
Sbjct: 61 KKFVETPGQKYKETDLLILFK 81
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 55.1 bits (132), Expect = 1e-10
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 161 SAKLFVGGLSWQTSSEK-LREYFGMFGAVTDVLIMKD-PITQRSRGFGFITFAEPETVEK 218
++ + LS + E LRE F FG++ + I + F+ F ++ E+
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 219 VLKVPIHTLDGKKIDPKHATPK 240
L++ L ++I A K
Sbjct: 64 ALQMNRSLLGNREISVSLADKK 85
Score = 54.8 bits (131), Expect = 2e-10
Identities = 15/81 (18%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 250 KKIFVGGVSQDTSAEE-VKAYFSQFGKVEETVMLMDQ-QTKRHRGFGFVTFENEEVVDHI 307
++I + +S + E ++ F FG +E+ + Q + + F+ FEN++ +
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 308 CEIHFHMIKNKKVECKKAQPK 328
+++ ++ N+++ A K
Sbjct: 65 LQMNRSLLGNREISVSLADKK 85
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 54.6 bits (131), Expect = 2e-10
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICE 309
++FVG + D + EE++ F ++GK E + +GFGF+ E + + E
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVE 63
Query: 310 IHFHMIKNKKVECKKAQPKEAV 331
+ ++ K++ + A ++
Sbjct: 64 LDNMPLRGKQLRVRFACHSASL 85
Score = 53.0 bits (127), Expect = 9e-10
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLK- 221
+LFVG L + E++R+ F +G +V I KD FGFI E
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAKVE 63
Query: 222 VPIHTLDGKKIDPKHATPK 240
+ L GK++ + A
Sbjct: 64 LDNMPLRGKQLRVRFACHS 82
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 54.4 bits (130), Expect = 5e-10
Identities = 17/88 (19%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 243 PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE 302
P + + +FVG + + + E++K FS+ G V ++ D++T + +G+GF ++++E
Sbjct: 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61
Query: 303 VVDH-ICEIHFHMIKNKKVECKKAQPKE 329
+ ++ + + A ++
Sbjct: 62 TALSAMRNLNGREFSGRALRVDNAASEK 89
Score = 52.1 bits (124), Expect = 3e-09
Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVE 217
D + +FVG + ++ + E+L++ F G V ++ D T + +G+GF + + ET
Sbjct: 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 64
Query: 218 KVLK-VPIHTLDGKKIDPKHATPKNRPKIGNRTKKIFVG 255
++ + G+ + +A + + K + G
Sbjct: 65 SAMRNLNGREFSGRALRVDNAASEKNKE---ELKSLGTG 100
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 54.0 bits (129), Expect = 6e-10
Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 246 GNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVD 305
G K +++ +S + ++ + F++F + + + T R RG F+TF N+E+
Sbjct: 15 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAW 74
Query: 306 H-ICEIHFHMIKNKKVECKKAQPKE 329
+ ++ + + K + + + K+
Sbjct: 75 QALHLVNGYKLYGKILVIEFGKNKK 99
Score = 53.6 bits (128), Expect = 7e-10
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETV 216
+P L++ LS + + L F F I +T R RG FITF E
Sbjct: 15 GEPNK-VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIA 73
Query: 217 EKVLKVPI-HTLDGKKIDPKHATPK 240
+ L + + L GK + + K
Sbjct: 74 WQALHLVNGYKLYGKILVIEFGKNK 98
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 53.5 bits (128), Expect = 6e-10
Identities = 12/89 (13%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 249 TKKIFVGGVSQDTSAEEVK-AYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH- 306
I++ +++ +E+K + + F + + + ++ ++ + RG FV F+ +
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 307 ICEIHFHMIKNKKVECKKAQPKEAVQANL 335
+ + +K + + A+ + A +
Sbjct: 63 LRSMQGFPFYDKPMRIQYAKTDSDIIAKM 91
Score = 53.1 bits (127), Expect = 8e-10
Identities = 12/83 (14%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 161 SAKLFVGGLSWQTSSEKLRE-YFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKV 219
+ +++ L+ + ++L++ +F +L + + + RG F+ F E +
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 220 LK-VPIHTLDGKKIDPKHATPKN 241
L+ + K + ++A +
Sbjct: 63 LRSMQGFPFYDKPMRIQYAKTDS 85
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 52.7 bits (126), Expect = 1e-09
Identities = 12/76 (15%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVE 217
P + ++ GG++ + + +R+ F FG + ++ + + + F+ F+ E+
Sbjct: 15 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAA 68
Query: 218 KVLKVPIHTLDGKKID 233
+ +++G I+
Sbjct: 69 HAIV----SVNGTTIE 80
Score = 51.9 bits (124), Expect = 2e-09
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 228 DGKKIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQT 287
+ K++ + ++ PK ++ GG++ + + ++ FS FG++ E +
Sbjct: 1 NTKQLRFEDVVNQSSPK----NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF----- 51
Query: 288 KRHRGFGFVTFENEEVVDH-ICEIHFHMIKNKKVECKKAQPK 328
+G+ FV F E H I ++ I+ V+C +
Sbjct: 52 -PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 52.4 bits (125), Expect = 2e-09
Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVL 220
LFV + + ++++E F +G + ++ + D T S+G+ + + +
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 66
Query: 221 K-VPIHTLDGKKIDPKHATPK 240
+ + + G+ I K
Sbjct: 67 EALNGAEIMGQTIQVDWCFVK 87
Score = 50.5 bits (120), Expect = 7e-09
Identities = 12/78 (15%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 252 IFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICEI 310
+FV + ++ +E++ F +G+++ + +D++T +G+ V +E + +
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 69
Query: 311 HFHMIKNKKVECKKAQPK 328
+ I + ++ K
Sbjct: 70 NGAEIMGQTIQVDWCFVK 87
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 50.7 bits (121), Expect = 4e-09
Identities = 7/83 (8%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310
+ V G Q ++ + F+Q+ ++ + + ++++
Sbjct: 6 WVTVFGFPQASA-SYILLQFAQY------GNILKHVMSNTGNWMHIRYQSKLQARKALSK 58
Query: 311 HFHMIKNK-KVECKKAQPKEAVQ 332
+ + K K ++
Sbjct: 59 DGRIFGESIMIGVKPCIDKNVME 81
Score = 49.2 bits (117), Expect = 1e-08
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 8/82 (9%)
Query: 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVL 220
+ V G ++S L + F +G + ++ + I + K L
Sbjct: 4 DTWVTVFGFPQASASYILLQ-FAQYGNILKHVMSNT------GNWMHIRYQSKLQARKAL 56
Query: 221 KVPIHTLDGK-KIDPKHATPKN 241
I K KN
Sbjct: 57 SKDGRIFGESIMIGVKPCIDKN 78
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 49.8 bits (118), Expect = 9e-09
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 164 LFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVP 223
L++ GL T+ + L + +G + + D T + +G+GF+ F P +K
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKA---- 56
Query: 224 IHTLDGKKIDPKHA 237
+ L + + A
Sbjct: 57 VTALKASGVQAQMA 70
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 49.1 bits (116), Expect = 7e-08
Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 230 KKIDPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKR 289
++ +H P + + + V + +++ F ++G +E ++ D++T++
Sbjct: 23 QQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQ 82
Query: 290 HRGFGFVTFENEEVVDH-ICEIHFHMIKNKKVECKKAQPKE 329
RG+GFV F++ I ++ I NK+++ A
Sbjct: 83 SRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123
Score = 45.3 bits (106), Expect = 1e-06
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETV 216
+ L V + +LR+ F +G + V I+ D T++SRG+GF+ F +
Sbjct: 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSA 97
Query: 217 EKVLKVPI-HTLDGKKIDPKHATPKN-RPKIGNRTK 250
++ + + K++ A + RP I
Sbjct: 98 QQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVG 133
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 47.5 bits (112), Expect = 7e-08
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 163 KLFVGGLSWQTSSE---KLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKV 219
+FV GLS + + K EYFG FG + V+I S+G + E
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 220 LKVPIHTLDGKKIDPK 235
L+ I ++ +D +
Sbjct: 70 LRA-IQCVNNVVVDGR 84
Score = 41.7 bits (97), Expect = 8e-06
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 251 KIFVGGVSQDTSAEEVKAYF---SQFGKVEETVMLMDQQTKRHRGFGFVTFEN----EEV 303
+FV G+SQ + EV +FGK+ + V+ +G + E+
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 304 VDHICEIHFHMIKNKKVEC 322
+ I ++ ++ + ++
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 47.2 bits (112), Expect = 1e-07
Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 264 EEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHIC-EIHFHMIKNKKVEC 322
E+++ S+FG++ + + + G V+F + E D+ + +++
Sbjct: 34 EDLRVECSKFGQIRK----LLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 89
Query: 323 KKAQPKE 329
+
Sbjct: 90 QAWDGTT 96
Score = 43.4 bits (102), Expect = 2e-06
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 171 WQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVPIHT-LDG 229
E LR FG + +L+ G ++F +PE + ++ G
Sbjct: 29 LNEIREDLRVECSKFGQIRKLLLFDR----HPDGVASVSFRDPEEADYCIQTLDGRWFGG 84
Query: 230 KKIDPKHATPKNR 242
++I +
Sbjct: 85 RQITAQAWDGTTD 97
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 46.9 bits (111), Expect = 2e-07
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
++ V L + + + L + F FG V ++ + ++ + +A+P + +
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT----KNNQFQALLQYADPVSAQHA--- 61
Query: 223 PIHTLDGKKI 232
+LDG+ I
Sbjct: 62 -KLSLDGQNI 70
Score = 39.6 bits (92), Expect = 6e-05
Identities = 9/86 (10%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 247 NRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH 306
+ +I V + + + + FS+FG V + + ++ + + + H
Sbjct: 5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQH 60
Query: 307 -ICEIHFHMI--KNKKVECKKAQPKE 329
+ I + ++
Sbjct: 61 AKLSLDGQNIYNACCTLRIDFSKLTS 86
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 45.9 bits (108), Expect = 4e-07
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 147 GDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFG 206
G SG S S + V GL L E FG + V++M
Sbjct: 1 GSSGSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QA 54
Query: 207 FITFAEPETVEKVLK---VPIHTLDGKKIDPKHATPKNRPKIGNR 248
+ F ++ ++ + + G++ ++T K + GN
Sbjct: 55 LVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNS 99
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 45.1 bits (106), Expect = 7e-07
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 145 SSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRG 204
SSG SG+ G + +L+VGGL TS L F FG++ + +K
Sbjct: 2 SSGSSGKIGY-GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------ 54
Query: 205 FGFITFAEPETVEKVLKVPIHTLDGKKID 233
F +I + + + + G +
Sbjct: 55 FAYIQYESLDAAQAACA----KMRGFPLG 79
Score = 35.8 bits (82), Expect = 0.001
Identities = 11/83 (13%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-I 307
T +++VGG+ +TS + F +F + + F ++ +E+ +
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRF------GSIRTIDHVKGDSFAYIQYESLDAAQAAC 70
Query: 308 CEIHFHMI--KNKKVECKKAQPK 328
++ + ++++ A+
Sbjct: 71 AKMRGFPLGGPDRRLRVDFAKSG 93
Score = 25.8 bits (56), Expect = 4.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 105 SSGDSGRSTPTGDDPTSAKLFVGGLN 130
SSG SG+ G + +L+VGGL
Sbjct: 2 SSGSSGKIGY-GKANPTTRLWVGGLG 26
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 44.3 bits (104), Expect = 1e-06
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 14/98 (14%)
Query: 144 KSSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSR 203
+ G S T S + GGL S +L G V +L+ +
Sbjct: 7 RHEGIETVSYAT----QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP----- 57
Query: 204 GFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATPKN 241
+ F + E ++ TL+GK++
Sbjct: 58 -YSFARYRTTEESKRA----YVTLNGKEVVDDLGQKIT 90
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 42.9 bits (100), Expect = 4e-06
Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 144 KSSGDSGR-STPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRS 202
K+SG + + DPT L++ L ++L FG + + S
Sbjct: 2 KASGVQAQMAKQQEQDPT--NLYISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTS 58
Query: 203 RGFGFITFAEPETVEKVLKVPIHTLDGKKIDPKHATPK 240
RG GF E E V I +GK I
Sbjct: 59 RGVGFARMESTEKCEAV----IGHFNGKFIKTPPGVSA 92
Score = 42.5 bits (99), Expect = 7e-06
Identities = 12/77 (15%), Positives = 24/77 (31%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHICEI 310
+++ + +E++ FG+V T +L D E+ I
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 79
Query: 311 HFHMIKNKKVECKKAQP 327
+ IK +P
Sbjct: 80 NGKFIKTPPGVSAPTEP 96
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 41.3 bits (96), Expect = 1e-05
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENE-EVVDHI 307
+ I V + QD++ +EV + R++ FVT N + + I
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDL-------KYCYVDRNKRTAFVTLLNGEQAQNAI 57
Query: 308 CEIHFHMIKNKKVECKKAQPK 328
H + + K + +
Sbjct: 58 QMFHQYSFRGKDLIVQLQPTD 78
Score = 39.7 bits (92), Expect = 4e-05
Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 158 DPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVE 217
S+ + V L ++ +++ + + +K R++ F+T E +
Sbjct: 2 SSGSSGILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQ 54
Query: 218 KVLKVPIHT-LDGKKIDPKHATPKNRPKIG 246
+++ GK + + G
Sbjct: 55 NAIQMFHQYSFRGKDLIVQLQPTDALLCSG 84
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 41.7 bits (97), Expect = 1e-05
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 8/103 (7%)
Query: 147 GDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFG 206
G SG S + ++ V GL S + L+++ + G G
Sbjct: 1 GSSGSSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA-------GDVCYADVQKDGMG 53
Query: 207 FITFAEPETVEKVLKVPIHT-LDGKKIDPKHATPKNRPKIGNR 248
+ + E +E L+ T + + + G
Sbjct: 54 MVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSSGPS 96
Score = 40.5 bits (94), Expect = 3e-05
Identities = 10/88 (11%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 243 PKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEE 302
P ++ V G+ S +++K + + + + G G V + +E
Sbjct: 9 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREA-------GDVCYADVQKDGMGMVEYLRKE 61
Query: 303 VVDH-ICEIHFHMIKNKKVECKKAQPKE 329
+++ + ++ ++ + E +
Sbjct: 62 DMEYALRKLDDTKFRSHEGETSYIRVYP 89
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 40.4 bits (94), Expect = 2e-05
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 161 SAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVL 220
L+V G + LR F FG + D+ + F+T+ + E+ ++ +
Sbjct: 5 GNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQAV 56
Query: 221 KVP-IHTLDGKKIDPKHATPK 240
++ ++ A +
Sbjct: 57 AELNGTQVESVQLKVNIARKQ 77
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 40.9 bits (95), Expect = 2e-05
Identities = 10/93 (10%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 249 TKKIFVGGV-----SQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEV 303
+ + S+ + + ++ F + K + F N
Sbjct: 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK------SFKRVRINFSNPLS 58
Query: 304 VDH-ICEIHFHMIKNKKVECKKAQPKEAVQANL 335
+H K+++ AQ ++L
Sbjct: 59 AADARLRLHKTEFLGKEMKLYFAQTLHIGSSHL 91
Score = 38.2 bits (88), Expect = 2e-04
Identities = 14/93 (15%), Positives = 22/93 (23%), Gaps = 12/93 (12%)
Query: 158 DPTSAKLFVGGL-----SWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAE 212
S+ L S + K F + T K I F+
Sbjct: 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSN 55
Query: 213 PETVEKVLKVPIHT-LDGKKIDPKHATPKNRPK 244
P + T GK++ A +
Sbjct: 56 PLSAADARLRLHKTEFLGKEMKLYFAQTLHIGS 88
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.8 bits (95), Expect = 3e-05
Identities = 12/92 (13%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 233 DPKHATPKNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRG 292
+P++++ + + + + + E ++G+VEE + + D G
Sbjct: 12 NPQNSSQSADG-LRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEE-MNVCDNLGDHLVG 69
Query: 293 FGFVTFENEEVVDH-ICEIHFHMIKNKKVECK 323
+V F EE + + +++ + + +
Sbjct: 70 NVYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 40.1 bits (93), Expect = 3e-05
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 6/76 (7%)
Query: 159 PTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEK 218
P SA L + + S E L+ F G V + Q+ R I E +
Sbjct: 8 PPSATLHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQMGSVEEAVQ 63
Query: 219 VLKVPIHT--LDGKKI 232
L + + +
Sbjct: 64 ALIDLHNHDLGENHHL 79
Score = 37.4 bits (86), Expect = 3e-04
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 240 KNRPKIGNRTKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFE 299
KN I + + + + S E++K FS G V + + K +
Sbjct: 1 KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA----LIQMG 56
Query: 300 NEEVVDHICEIH--FHMIKNKKVECKKAQPK 328
+ E + +N + ++
Sbjct: 57 SVEEAVQALIDLHNHDLGENHHLRVSFSKST 87
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 38.6 bits (89), Expect = 2e-04
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 10/96 (10%)
Query: 157 DDPTSAKL-FVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPET 215
++ L F G L QT E L F G + + ++ G I F E
Sbjct: 6 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAK 59
Query: 216 VEKVLKVPIHTLDGKKIDPKHATPKNRPKIGNRTKK 251
+ + ++ G K+
Sbjct: 60 EA---LGKAKDANNGNLQLRNKEVTWEVLEGEVEKE 92
Score = 37.5 bits (86), Expect = 4e-04
Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFEN--EEVVDH 306
F G + T E++ FS G+++ + G + F+ +E +
Sbjct: 11 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR------GAKEGIILFKEKAKEALGK 64
Query: 307 ICEIHFHMIKNKKVECKKAQPK 328
+ + ++ + E +
Sbjct: 65 AKDANNGNLQLRNKEVTWEVLE 86
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 37.4 bits (86), Expect = 2e-04
Identities = 8/88 (9%), Positives = 24/88 (27%), Gaps = 10/88 (11%)
Query: 249 TKKIFVGGV-SQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDHI 307
+ + + ++ FG + ++L F+ E
Sbjct: 8 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN------KINEAFIEMATTEDAQAA 61
Query: 308 CEI---HFHMIKNKKVECKKAQPKEAVQ 332
+ ++ K V +Q + ++
Sbjct: 62 VDYYTTTPALVFGKPVRVHLSQKYKRIK 89
Score = 31.6 bits (71), Expect = 0.030
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Query: 156 GDDPTSAKLFVGGL-SWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPE 214
G T + + + +L + FG +++ LI+ FI A E
Sbjct: 3 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTE 56
Query: 215 TVEKVL---KVPIHTLDGKKIDPKHATPKNRPK 244
+ + + GK + + R K
Sbjct: 57 DAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIK 89
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.9 bits (85), Expect = 5e-04
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 169 LSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGF--ITFAEPETVEKVLKVPIHT 226
++ E +R+ +G V + I + G G + F +K +
Sbjct: 22 EEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKA----MQG 77
Query: 227 LDGKKID 233
L G+K
Sbjct: 78 LTGRKFA 84
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 36.0 bits (82), Expect = 8e-04
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 21/97 (21%)
Query: 163 KLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKV 222
++ V GL S + L+++ G G + F E +
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREA-------GDVCYADVYRDGTGVVEFVRKEDMTYA--- 51
Query: 223 PIHTLDGKKID----------PKHATPKNRPKIGNRT 249
+ LD K K P++ +R+
Sbjct: 52 -VRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRS 87
Score = 34.5 bits (78), Expect = 0.003
Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 251 KIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-ICE 309
++ V G+ S +++K + + + G G V F +E + + + +
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREA-------GDVCYADVYRDGTGVVEFVRKEDMTYAVRK 54
Query: 310 IHFHMIKNKKVECKKAQPKEA 330
+ ++ + E + K
Sbjct: 55 LDNTKFRSHEGETAYIRVKVD 75
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 35.2 bits (80), Expect = 0.002
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETV 216
+ P + LF+ L +T+ L F F +V ++ + F+ F
Sbjct: 4 EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIA-----FVEFTTELQS 58
Query: 217 EKVLKVPIHTLDGKKIDPKH 236
L G KI P H
Sbjct: 59 NA----AKEALQGFKITPTH 74
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.2 bits (80), Expect = 0.002
Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVD--- 305
++ + + + + + EV A F + + + + F+ EE
Sbjct: 8 SRVLHIRKLPGEVTETEVIALGLPF------GKVTNILMLKGKNQAFLELATEEAAITMV 61
Query: 306 HICEIHFHMIKNKKVECKKAQPKE 329
+ ++N+ + + + KE
Sbjct: 62 NYYSAVTPHLRNQPIYIQYSNHKE 85
Score = 34.1 bits (77), Expect = 0.004
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 157 DDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETV 216
D S L + L + + ++ FG + + + + + F+ A E
Sbjct: 4 DGAPSRVLHIRKLPGEVTETEVIALGLPFG------KVTNILMLKGKNQAFLELATEEAA 57
Query: 217 EKVLKVPI---HTLDGKKIDPKHATPK 240
++ L + I +++ K
Sbjct: 58 ITMVNYYSAVTPHLRNQPIYIQYSNHK 84
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 34.2 bits (77), Expect = 0.006
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 18/91 (19%)
Query: 145 SSGDSGRSTPTGDDPTSAKLFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRG 204
SSG SGRS + L T + +++E F FG++ VL+ +
Sbjct: 2 SSGSSGRS--------KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG------I 47
Query: 205 FGFITFAEPETVEKVLKVPIHTLDGKKIDPK 235
+ F EP K + L K
Sbjct: 48 TAIVEFLEPLEARKAFR----HLAYSKFHHV 74
Score = 26.8 bits (58), Expect = 1.8
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 7/81 (8%)
Query: 249 TKKIFVGGVSQDTSAEEVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEEVVDH-I 307
I + T A E++ FS+FG + ++ V F
Sbjct: 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAF 63
Query: 308 CEIHFHMIKNKKVECKKAQPK 328
+ + + + + A
Sbjct: 64 RHLAYSKFHHVPLYLEWAPIG 84
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 33.6 bits (76), Expect = 0.010
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 161 SAKLFVGGLSWQ-TSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKV 219
++ L V L+ + + + L FG++G V V I+ + + A+ +
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-----NALVQMADGNQAQLA 56
Query: 220 LKVPI-HTLDGKKIDPKHATPKNRPK 244
+ H L GK I + +N
Sbjct: 57 MSHLNGHKLHGKPIRITLSKHQNVQL 82
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 30.3 bits (67), Expect = 0.067
Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 164 LFVGGLSWQTSSEKLREYFGMFGAVTDVLIMKDPITQRSRGFGFITFAEPETVEKVLKVP 223
+ + GL +++++ + + +K + +G F+T E E +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 224 IHT-LDGKKI 232
+ L +++
Sbjct: 54 HQSRLREREL 63
>d1kmoa_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia
coli [TaxId: 562]}
Length = 661
Score = 28.4 bits (61), Expect = 1.8
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 111 RSTPTGDDPTSAKLFVGGLNVVREAHQLVLVNGKSSGDSGRSTPTGD 157
+ TG + + GLN + VL++G + P
Sbjct: 54 ENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLS 100
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 177
Score = 26.7 bits (59), Expect = 4.0
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 17 NGLIPTMNGLVQIPHHPGLVHLNGPPPP--PHQLVKLNGAPQVNTSP 61
N L P + L ++P P + L PPPP L + N SP
Sbjct: 4 NQLYPI-DLLTELP--PPITDLTLPPPPLVIPPERMLVPSELSNASP 47
>d2g38b1 a.25.4.2 (B:2-174) PPE41 {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 173
Score = 26.3 bits (58), Expect = 4.4
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 344 GPLGLRM-AAPAPITPATQLAALQSQAQAQVQAAAAAVAAQNAAA 387
GP+ +++ A P +Q Q A + A
Sbjct: 57 GPVVMQLMEAAKPFVRWLTDLCVQLSEVE-RQIHEIVRAYEWAHH 100
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli
[TaxId: 562]}
Length = 145
Score = 25.8 bits (56), Expect = 5.5
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 49 VKLNGAPQVNTSPPQNAILHQQPTPQPQQQQQQPPQPQ 86
+++ G Q +P QPQ QP QPQ
Sbjct: 109 MQMLGGRQGGGAPAGG----NIGGGQPQGGWGQPQQPQ 142
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 25.7 bits (56), Expect = 7.3
Identities = 10/48 (20%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 40 GPPPPPHQLVKLNGAPQVNTSPPQNAILHQQPTPQPQQQQQQPPQPQP 87
G V+ + +N Q QPQ QQP
Sbjct: 4 GSAAAATPAVR-TVPQYKYAAGVRNP--QQHLNAQPQVTMQQPAVHVQ 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.386
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,428,332
Number of extensions: 66709
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 176
Length of query: 398
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,213,086
Effective search space: 377269746
Effective search space used: 377269746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.2 bits)