BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6493
(1321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U4Q|A Chain A, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
Brain Alpha Spectrin
pdb|1U4Q|B Chain B, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
Brain Alpha Spectrin
Length = 322
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/321 (63%), Positives = 260/321 (80%)
Query: 511 ANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKD 570
ANKQ+ + +KD DFWL EVE+LL SED GKDLASV NL+KKHQL+EADI AH+DR+KD
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 571 MNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADE 630
+N QADSL+ S FD S +++KR++IN R++RIK++AA R+A+LNE++ LHQFFRD+ DE
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 631 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL 690
ESWIKEKKLLV S+DYGRDLTGVQNL+KKHKRLEAELA+H+PAIQ V +TG+KL D + +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 691 GVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVE 750
G EI+QRL W ELKQLAA RGQ+L+ESL YQ F+A VEEEEAWI+EK L++ E
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 241
Query: 751 DYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQL 810
DYGDT+AA+QGLLKKH+AFETDF+VH+DR D+C+ G LI+ NHH ++IT + + L+
Sbjct: 242 DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKG 301
Query: 811 KLDNLMALATKRKTKLMDNSA 831
K+ +L A +RK KL +NSA
Sbjct: 302 KVSDLEKAAAQRKAKLDENSA 322
Score = 153 bits (387), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 139/260 (53%)
Query: 617 ANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQN 676
AN F I D + W+ E + L+ S+DYG+DL V NL KKH+ LEA++++H+ +++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 677 VQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEE 736
+ + LM S +++ + + +N + +K +AA R KL+ES F +++E
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 737 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNH 796
E+WI EK+ L+S EDYG + VQ L KKH E + + H + G KL +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 797 HADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSE 856
+ I QR Q L LA R +L ++ Y QF+ + E+WI +K T V SE
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 241
Query: 857 EYGRDLSTVQTLLTKQETFD 876
+YG L+ +Q LL K E F+
Sbjct: 242 DYGDTLAAIQGLLKKHEAFE 261
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 174/317 (54%), Gaps = 3/317 (0%)
Query: 408 QQFSRDADEMENWIAE-KLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAM 466
Q F+ + + W++E + LA+E+ KD A++ + +KHQ EA+++A+ DR++ + +
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 467 GQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDF 526
+L+ S+ V+ + +I +++ + + KL E+++ + + D +
Sbjct: 66 ADSLMTSSAFDTSQ--VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEES 123
Query: 527 WLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDA 586
W+ E + L++SED G+DL VQNL KKH+ +EA++ AH+ I+ + L D
Sbjct: 124 WIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGK 183
Query: 587 SSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDY 646
IQ++ + ++ +K LAA R RL E+ QF ++ +EE+WI EK LV S+DY
Sbjct: 184 EEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDY 243
Query: 647 GRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAW 706
G L +Q L KKH+ E + H+ + +V GE L+ +N V I ++K L
Sbjct: 244 GDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKV 303
Query: 707 SELKQLAANRGQKLDES 723
S+L++ AA R KLDE+
Sbjct: 304 SDLEKAAAQRKAKLDEN 320
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 166/319 (52%)
Query: 86 AHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQ 145
A++ Q F+ + + W+ E + L + D GKDL SV L +KH+ LE D++A D+++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 146 LDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDL 205
L+ A+ LM + Q K++ IN + ++ + A R+ KL +S+ L +F D D
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 206 MSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHY 265
SWI LVSS++ D+TG + L ++H+ E+ A Q G++L
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 266 ASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAE 325
EIQ +L + ++L++ AR +L++ LE Q F + E+ E W++ + + +E
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 241
Query: 326 EVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLD 385
+ ++ L+KKHE F+ H++++ + + LI +++ + I K K +
Sbjct: 242 DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKG 301
Query: 386 RWRLLKEALIEKRSRLGES 404
+ L++A +++++L E+
Sbjct: 302 KVSDLEKAAAQRKAKLDEN 320
Score = 123 bits (308), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 157/292 (53%), Gaps = 1/292 (0%)
Query: 6 QDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDL 65
+D G+DL V + KK ++D+ A+E RL ++N A LM+ + + +++ + + +
Sbjct: 29 EDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTS-QVKDKRETI 87
Query: 66 NQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQAL 125
N ++ ++ + A R +L +H + +F RD+D+ + WI+EK +++ D G+DL VQ L
Sbjct: 88 NGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNL 147
Query: 126 QRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTR 185
++KH+ LE +LAA I+ + +T +L + E+ + + + W +L A R
Sbjct: 148 RKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAAR 207
Query: 186 KEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDAR 245
++L +S + Q+F+++ + +WIN M LV+S++ + + + LL++H+ T+
Sbjct: 208 GQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVH 267
Query: 246 TGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQ 297
G+ L++ ++ I K+ L DLEKA R+ +LD+
Sbjct: 268 KDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDE 319
Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 138/279 (49%), Gaps = 1/279 (0%)
Query: 196 QRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLF 255
Q F + +D W++ + L++S++ D+ LL++HQ +I A + +
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 256 GQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWM 315
L+ S + + +++DK + + ++ ARR +L++ L F+RD + E+W+
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWI 125
Query: 316 SAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKP 375
++ +++E+ V+ L KKH+ + + AHE I + +L + +
Sbjct: 126 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE 185
Query: 376 IDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKD 435
I + Q +D W+ LK+ + RL ES QQF + +E E WI EK+ L E Y D
Sbjct: 186 IQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGD 245
Query: 436 P-ANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDK 473
A IQ +KH+AFE + + DR+ V A G++LI K
Sbjct: 246 TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 284
>pdb|3FB2|A Chain A, Crystal Structure Of The Human Brain Alpha Spectrin
Repeats 15 And 16. Northeast Structural Genomics
Consortium Target Hr5563a.
pdb|3FB2|B Chain B, Crystal Structure Of The Human Brain Alpha Spectrin
Repeats 15 And 16. Northeast Structural Genomics
Consortium Target Hr5563a
Length = 218
Score = 302 bits (773), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/204 (74%), Positives = 163/204 (79%)
Query: 195 LQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDL 254
LQRFLSD+RDL SWIN + GLVSSDELA DVTGAEALLERHQEHRTEIDAR GTFQAF+
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 255 FGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENW 314
FGQQLL GHYAS EI+ KL L + R DLEKAW+ RR LDQCLELQLF+RDCEQAENW
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENW 134
Query: 315 MSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAK 374
+AREAFLN E+ D+VEALIKKHEDFDKAIN EEKI ALQ ADQLIAA HYA
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKG 194
Query: 375 PIDDKRKQVLDRWRLLKEALIEKR 398
I +R +VLDRWR LK IEKR
Sbjct: 195 DISSRRNEVLDRWRRLKAQXIEKR 218
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 103/185 (55%)
Query: 620 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQE 679
L +F D D SWI + LV SD+ +D+TG + L ++H+ E+ + Q ++
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 680 TGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAW 739
G++L+ + PEI+Q+L +L+Q ++L++ R LD+ L Q F E+ E W
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENW 134
Query: 740 ISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHAD 799
+ ++ L+ ED GD++ +V+ L+KKH+ F+ +V ++ A + + ++LI A ++
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKG 194
Query: 800 SITQR 804
I+ R
Sbjct: 195 DISSR 199
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 5/206 (2%)
Query: 301 LQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQT 360
LQ F D +W++ ++++E+ EAL+++H++ I+A A +
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 361 LADQLIAADHYAAKPIDDKRKQVLDRWRL-LKEALIEKRSRLGESQTLQQFSRDADEMEN 419
QL+A HYA+ I K +LD+ R L++A +++R L + LQ F RD ++ EN
Sbjct: 75 FGQQLLAHGHYASPEIKQK-LDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAEN 133
Query: 420 WIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVG 478
W A + L TE+ ++++ +KH+ F+ + ++I ++ A LI
Sbjct: 134 WXAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAK 193
Query: 479 SEEAVQARLASIADQWEFLTQKTTEK 504
+ + +R + D+W L + EK
Sbjct: 194 GD--ISSRRNEVLDRWRRLKAQXIEK 217
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 3/197 (1%)
Query: 727 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 786
Q FL+ + +WI+ + L+S ++ + + LL++H T+
Sbjct: 16 QRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQF 75
Query: 787 GNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQ-FMWKADVVESW 845
G +L+ ++ + I Q+ L + +L +R+ L D LQ F + E+W
Sbjct: 76 GQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXL-DQCLELQLFHRDCEQAENW 134
Query: 846 IADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQT 905
A +E + +E+ G L +V+ L+ K E FD ++ E E I + DQL+A+ H
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQE-EKIAALQAFADQLIAAGHYAK 193
Query: 906 PAIVKRHGDVIARWQKL 922
I R +V+ RW++L
Sbjct: 194 GDISSRRNEVLDRWRRL 210
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 88/194 (45%)
Query: 517 YIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQAD 576
+++ +DL W+ + L++S++ KD+ + L+++HQ +I A +
Sbjct: 18 FLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQ 77
Query: 577 SLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKE 636
L+ G + + I++K +++ ++ R+ L++ L F RD E+W
Sbjct: 78 QLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENWXAA 137
Query: 637 KKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIE 696
++ + ++D G L V+ L KKH+ + + + I +Q ++L+ + +I
Sbjct: 138 REAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDIS 197
Query: 697 QRLKLLNQAWSELK 710
R + W LK
Sbjct: 198 SRRNEVLDRWRRLK 211
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 89/175 (50%), Gaps = 1/175 (0%)
Query: 7 DVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDLN 66
++ +D+ E + ++ + ++++ A + QL++ G A+ +I+ +L L+
Sbjct: 40 ELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHY-ASPEIKQKLDILD 98
Query: 67 QKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQ 126
Q+ L++ +R L E+Q FHRD ++ ++W ++ LN D G L SV+AL
Sbjct: 99 QERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENWXAAREAFLNTEDKGDSLDSVEALI 158
Query: 127 RKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAK 181
+KHE ++ + +KI L A++L+ +++ E+ + W +L A+
Sbjct: 159 KKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQ 213
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 83/185 (44%)
Query: 89 VQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDE 148
+QRF D + WI +++++L KD+ +AL +H+ ++ A + ++
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 149 TANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSW 208
+L+ + + K +++E L R+ L +LQ F D +W
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENW 134
Query: 209 INSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASV 268
+ +++++ + + EAL+++H++ I+ + A F QL+ +GHYA
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKG 194
Query: 269 EIQDK 273
+I +
Sbjct: 195 DISSR 199
>pdb|1U5P|A Chain A, Crystal Structure Of Repeats 15 And 16 Of Chicken Brain
Alpha Spectrin
Length = 216
Score = 296 bits (757), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 143/214 (66%), Positives = 178/214 (83%)
Query: 511 ANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKD 570
ANKQ+ + +KD DFWL EVE+LL SED GKDLASV NL+KKHQL+EADI AH+DR+KD
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 571 MNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADE 630
+N QADSL+ S FD S +++KR++IN R++RIK++AA R+A+LNE++ LHQFFRD+ DE
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 631 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL 690
ESWIKEKKLLV S+DYGRDLTGVQNL+KKHKRLEAELA+H+PAIQ V +TG+KL D + +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 691 GVPEIEQRLKLLNQAWSELKQLAANRGQKLDESL 724
G EI+QRL W ELKQLAA RGQ+L+ESL
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESL 215
Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%)
Query: 617 ANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQN 676
AN F I D + W+ E + L+ S+DYG+DL V NL KKH+ LEA++++H+ +++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 677 VQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEE 736
+ + LM S +++ + + +N + +K +AA R KL+ES F +++E
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 737 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNH 796
E+WI EK+ L+S EDYG + VQ L KKH E + + H + G KL +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 797 HADSITQRCQQLQLKLDNLMALATKRKTKL 826
+ I QR Q L LA R +L
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRL 211
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 113/199 (56%), Gaps = 3/199 (1%)
Query: 314 WMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAA 373
W+S EA L +E+ +V L+KKH+ + I+AHE+++ L + AD L+ + +
Sbjct: 18 WLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDT 77
Query: 374 KPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESY 433
+ DKR+ + R++ +K +R++L ES L QF RD D+ E+WI EK L + E Y
Sbjct: 78 SQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDY 137
Query: 434 -KDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIAD 492
+D +Q+ +KH+ EAELAA+ IQ VL G+ L D +G EE +Q RLA D
Sbjct: 138 GRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDD-NTIGKEE-IQQRLAQFVD 195
Query: 493 QWEFLTQKTTEKSLKLKEA 511
W+ L Q + +L+E+
Sbjct: 196 HWKELKQLAAARGQRLEES 214
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 1/207 (0%)
Query: 727 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 786
Q+F +++ + W+SE + LL+ EDYG +A+V LLKKH E D S H DR D+ S
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 787 GNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWI 846
+ L+ + + + + + + + ++A R+ KL ++ QF D ESWI
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWI 125
Query: 847 ADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTP 906
+K+ V SE+YGRDL+ VQ L K + +A L A E IQ + +L N
Sbjct: 126 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE-PAIQGVLDTGKKLSDDNTIGKE 184
Query: 907 AIVKRHGDVIARWQKLLGDSNARKQRL 933
I +R + W++L + AR QRL
Sbjct: 185 EIQQRLAQFVDHWKELKQLAAARGQRL 211
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 112/215 (52%)
Query: 86 AHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQ 145
A++ Q F+ + + W+ E + L + D GKDL SV L +KH+ LE D++A D+++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 146 LDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDL 205
L+ A+ LM + Q K++ IN + ++ + A R+ KL +S+ L +F D D
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 206 MSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHY 265
SWI LVSS++ D+TG + L ++H+ E+ A Q G++L
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 266 ASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLE 300
EIQ +L + ++L++ AR +L++ LE
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE 216
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 115/211 (54%), Gaps = 3/211 (1%)
Query: 408 QQFSRDADEMENWIAE-KLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAM 466
Q F+ + + W++E + LA+E+ KD A++ + +KHQ EA+++A+ DR++ + +
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 467 GQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDF 526
+L+ S+ V+ + +I +++ + + KL E+++ + + D +
Sbjct: 66 ADSLMTSSAFDTSQ--VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEES 123
Query: 527 WLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDA 586
W+ E + L++SED G+DL VQNL KKH+ +EA++ AH+ I+ + L D
Sbjct: 124 WIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGK 183
Query: 587 SSIQEKRQSINERYERIKNLAAHRQARLNEA 617
IQ++ + ++ +K LAA R RL E+
Sbjct: 184 EEIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 105/187 (56%), Gaps = 1/187 (0%)
Query: 6 QDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDL 65
+D G+DL V + KK ++D+ A+E RL ++N A LM+ + + +++ + + +
Sbjct: 29 EDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTS-QVKDKRETI 87
Query: 66 NQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQAL 125
N ++ ++ + A R +L +H + +F RD+D+ + WI+EK +++ D G+DL VQ L
Sbjct: 88 NGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNL 147
Query: 126 QRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTR 185
++KH+ LE +LAA I+ + +T +L + E+ + + + W +L A R
Sbjct: 148 RKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAAR 207
Query: 186 KEKLLDS 192
++L +S
Sbjct: 208 GQRLEES 214
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 99/209 (47%)
Query: 196 QRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLF 255
Q F + +D W++ + L++S++ D+ LL++HQ +I A + +
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 256 GQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWM 315
L+ S + + +++DK + + ++ ARR +L++ L F+RD + E+W+
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWI 125
Query: 316 SAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKP 375
++ +++E+ V+ L KKH+ + + AHE I + +L + +
Sbjct: 126 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE 185
Query: 376 IDDKRKQVLDRWRLLKEALIEKRSRLGES 404
I + Q +D W+ LK+ + RL ES
Sbjct: 186 IQQRLAQFVDHWKELKQLAAARGQRLEES 214
>pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|B Chain B, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|C Chain C, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
Length = 213
Score = 282 bits (722), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 136/212 (64%), Positives = 171/212 (80%)
Query: 620 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQE 679
+HQFFRD+ DEESWIKEKKLLV S+DYGRDLTGVQNL+KKHKRLEAELA+H+PAIQ+V +
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 680 TGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAW 739
TG+KL D + +G EI+QRL W ELKQLAA RGQ+L+ESL YQ F+A VEEEEAW
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 740 ISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHAD 799
I+EK L++ EDYGDT+AA+QGLLKKH+AFETDF+VH+DR D+C+ G LI+ NHH +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 800 SITQRCQQLQLKLDNLMALATKRKTKLMDNSA 831
+IT + + L+ K+ +L A +RK KL +NSA
Sbjct: 182 NITAKMKGLKGKVSDLEKAAAQRKAKLDENSA 213
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 3/211 (1%)
Query: 407 LQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQSVLA 465
+ QF RD D+ E+WI EK L + E Y +D +Q+ +KH+ EAELAA+ IQSVL
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 466 MGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLD 525
G+ L D +G EE +Q RLA D W+ L Q + +L+E+ + + ++A V++ +
Sbjct: 62 TGKKLSDD-NTIGKEE-IQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEE 119
Query: 526 FWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD 585
W+ E +L+ SED G LA++Q L+KKH+ E D H DR+ D+ + LI
Sbjct: 120 AWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHH 179
Query: 586 ASSIQEKRQSINERYERIKNLAAHRQARLNE 616
+I K + + + ++ AA R+A+L+E
Sbjct: 180 VENITAKMKGLKGKVSDLEKAAAQRKAKLDE 210
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 113/201 (56%)
Query: 523 DLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSG 582
D + W+ E + L++SED G+DL VQNL KKH+ +EA++ AH+ I+ + L D
Sbjct: 11 DEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDN 70
Query: 583 QFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVG 642
IQ++ + ++ +K LAA R RL E+ QF ++ +EE+WI EK LV
Sbjct: 71 TIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVA 130
Query: 643 SDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLL 702
S+DYG L +Q L KKH+ E + H+ + +V GE L+ +N V I ++K L
Sbjct: 131 SEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGL 190
Query: 703 NQAWSELKQLAANRGQKLDES 723
S+L++ AA R KLDE+
Sbjct: 191 KGKVSDLEKAAAQRKAKLDEN 211
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 111/209 (53%)
Query: 89 VQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDE 148
V +F RD+D+ + WI+EK +++ D G+DL VQ L++KH+ LE +LAA I+ + +
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 149 TANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSW 208
T +L + E+ + + + W +L A R ++L +S + Q+F+++ + +W
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 209 INSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASV 268
IN M LV+S++ + + + LL++H+ T+ G+ L++ ++
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 269 EIQDKLGNLAEAREDLEKAWIARRMQLDQ 297
I K+ L DLEKA R+ +LD+
Sbjct: 182 NITAKMKGLKGKVSDLEKAAAQRKAKLDE 210
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Query: 304 FYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLAD 363
F+RD + E+W+ ++ +++E+ V+ L KKH+ + + AHE I ++
Sbjct: 5 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGK 64
Query: 364 QLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAE 423
+L + + I + Q +D W+ LK+ + RL ES QQF + +E E WI E
Sbjct: 65 KLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINE 124
Query: 424 KLQLATEESYKDP-ANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDK 473
K+ L E Y D A IQ +KH+AFE + + DR+ V A G++LI K
Sbjct: 125 KMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 175
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 76/148 (51%)
Query: 729 FLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGN 788
F +++EE+WI EK+ L+S EDYG + VQ L KKH E + + H + G
Sbjct: 5 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGK 64
Query: 789 KLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIAD 848
KL + + I QR Q L LA R +L ++ Y QF+ + E+WI +
Sbjct: 65 KLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINE 124
Query: 849 KETHVKSEEYGRDLSTVQTLLTKQETFD 876
K T V SE+YG L+ +Q LL K E F+
Sbjct: 125 KMTLVASEDYGDTLAAIQGLLKKHEAFE 152
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 106/210 (50%)
Query: 195 LQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDL 254
+ +F D D SWI LVSS++ D+TG + L ++H+ E+ A Q+
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 255 FGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENW 314
G++L EIQ +L + ++L++ AR +L++ LE Q F + E+ E W
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 315 MSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAK 374
++ + + +E+ ++ L+KKHE F+ H++++ + + LI +++ +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 375 PIDDKRKQVLDRWRLLKEALIEKRSRLGES 404
I K K + + L++A +++++L E+
Sbjct: 182 NITAKMKGLKGKVSDLEKAAAQRKAKLDEN 211
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 6 QDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLM---SLGQTEAALKIQTQL 62
+D G DL V+ ++KK +++L A+E + + + +L ++G+ E IQ +L
Sbjct: 26 EDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEE----IQQRL 81
Query: 63 QDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSV 122
W L+QL A R +L + E Q+F +V+E + WI EK + + D G L ++
Sbjct: 82 AQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAI 141
Query: 123 QALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKA 182
Q L +KHE E D D++ + L++ + E AK K + + + L A
Sbjct: 142 QGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAA 201
Query: 183 NTRKEKL 189
RK KL
Sbjct: 202 AQRKAKL 208
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 834 QFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTL 893
QF D ESWI +K+ V SE+YGRDL+ VQ L K + +A L A E IQ++
Sbjct: 4 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE-PAIQSVLDT 62
Query: 894 KDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRL 933
+L N I +R + W++L + AR QRL
Sbjct: 63 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 102
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 250 bits (638), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 148/498 (29%), Positives = 268/498 (53%), Gaps = 25/498 (5%)
Query: 834 QFMWKADVVESWIADKETHVKSEEY-GRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITT 892
+F KA + ESW KE ++ ++Y LS ++ LL K E F++ L A + + ++ I
Sbjct: 374 KFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQ-DRVEQIAA 432
Query: 893 LKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAK 952
+ +L ++ +P++ R + +W L + R++ L R ++ I+ LYL +AK
Sbjct: 433 IAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAK 492
Query: 953 KASSFNSWFENAEEDLTDPVRCNSIEEIRALREXXXXXXXXXXXXXXDFEALAALDQQI- 1011
+A+ FN+W E A EDL D ++IEEI+ L + +A+ + ++
Sbjct: 493 RAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVS 552
Query: 1012 ---KSFNV---GPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFA 1065
++++V G NPYT T + + W ++++++ RD L +E RQ +N+ LRK+F
Sbjct: 553 KIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFG 612
Query: 1066 KHANAFHQWLT----ETRTSMMEGTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILE 1121
AN W+ E +E G+LE QL +++ + + + + ++E ++
Sbjct: 613 AQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQ 672
Query: 1122 EHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFK 1181
E LI DN++T ++ + W+QL R + +E QI R+ G+S++ + EF F
Sbjct: 673 EALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFN 732
Query: 1182 HFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMA 1241
HFD+ K+G ++ +F++CL ++GY++ + EF I+ +VDPNR G V+ Q ++
Sbjct: 733 HFDRKKTGMMDCEDFRACLISMGYNM-------GEAEFARIMSIVDPNRMGVVTFQAFID 785
Query: 1242 FMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKT 1301
FM S+ET + +++++ +F I A D+ Y+T +EL L + A+YC+ RM PY
Sbjct: 786 FM-SRETADTDTADQVMASF-KILAGDKNYITVDELRRELPPDQAEYCIARMAPY---NG 840
Query: 1302 ERGIPGALDYIEFTRTLF 1319
+PGALDY+ F+ L+
Sbjct: 841 RDAVPGALDYMSFSTALY 858
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 128/292 (43%), Gaps = 27/292 (9%)
Query: 702 LNQAWSELKQLAAN----------RGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVED 751
+N AW L+Q R ++LD + F K E+W K+ +L +D
Sbjct: 340 INNAWGGLEQAEKGYEEWLLNEIRRLERLDH--LAEKFRQKASIHESWTDGKEAMLQQKD 397
Query: 752 Y-GDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQL 810
Y T++ ++ LLKKH+AFE+D + H+DR I + +L E + + S+ RCQ++
Sbjct: 398 YETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICD 457
Query: 811 KLDNLMALATKRK------TKLMD--NSAYLQFMWKADVVESWIADKETHVKSEEYGRDL 862
+ DNL AL KR+ KL++ + YL++ +A +W+ ++ +
Sbjct: 458 QWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTI 517
Query: 863 STVQTLLTKQETFDAGLHAFEHE-----GIQNITTLKDQLVASNHDQT-PAIVKRHGDVI 916
+Q L T E F A L + E GI N + Q N T P ++
Sbjct: 518 EEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEIN 577
Query: 917 ARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNSWFENAEEDL 968
+W+ + R Q L+ + +Q E L F +A+ W + E++
Sbjct: 578 GKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEI 629
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 105/213 (49%), Gaps = 19/213 (8%)
Query: 269 EIQDKLGNLAEAREDLEKAWI---ARRMQ-LDQCLELQLFYRDCEQAENWMSAREAFLNA 324
+I + G L +A + E+ W+ RR++ LD E F + E+W +EA L
Sbjct: 339 DINNAWGGLEQAEKGYEE-WLLNEIRRLERLDHLAEK--FRQKASIHESWTDGKEAMLQQ 395
Query: 325 EEVDSKT-DNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQV 383
++ ++ T ++AL+KKHE F+ + AH++++ + +A +L D+Y + ++ + +++
Sbjct: 396 KDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKI 455
Query: 384 LDRWRLL-------KEALIEKRSRLGES--QTLQQFSRDADEMENWIAEKLQ-LATEESY 433
D+W L +EAL E+ +L E+ Q ++++ A NW+ ++ L
Sbjct: 456 CDQWDNLGALTQKRREAL-ERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIV 514
Query: 434 KDPANIQSKHQKHQAFEAELAANADRIQSVLAM 466
IQ H+ F+A L Q++L +
Sbjct: 515 HTIEEIQGLTTAHEQFKATLPDADKERQAILGI 547
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 28/225 (12%)
Query: 15 VEVMQKKFDDFQ------SDLKANEVRLAEMNEIAMQL-MSLGQTEAALKIQTQL-QDLN 66
++ MQ+K +DF+ K E E+N +Q + L A + + ++ D+N
Sbjct: 282 MQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDIN 341
Query: 67 QKWTSLQQLTAERATQLGSAHEVQR----------FHRDVDETKDWIQEKDEALNNNDL- 115
W L+Q AE+ + +E++R F + + W K+ L D
Sbjct: 342 NAWGGLEQ--AEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYE 399
Query: 116 GKDLRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEW 175
L ++AL +KHE E DLAA D++ Q+ A L + + A+ ++I ++W
Sbjct: 400 TATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQW 459
Query: 176 TQLTA------KANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMG 214
L A +A R EKLL++ D Q +L + + N M G
Sbjct: 460 DNLGALTQKRREALERTEKLLETID-QLYLEYAKRAAPFNNWMEG 503
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 106/254 (41%), Gaps = 27/254 (10%)
Query: 527 WLGEVESLLTSED-SGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD 585
W E++L +D L+ ++ L+KKH+ E+D+ AH DR++ + A L + +D
Sbjct: 385 WTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYD 444
Query: 586 ASSIQEKRQSINERYERIKNLAAHRQARLNEA----NTLHQFFRDIADE----ESWIKEK 637
+ S+ + Q I ++++ + L R+ L T+ Q + + A +W++
Sbjct: 445 SPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGA 504
Query: 638 KLLVGSDDYGRDLTGVQNLKKKHKRLEAELA---SHQPAIQNVQETGEKLMDVSNLGV-- 692
+ + +Q L H++ +A L + AI + K++ ++ +
Sbjct: 505 MEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAG 564
Query: 693 --PEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQ--------HFLAKVEEEEAWISE 742
P + +N W ++QL R Q L E Q F A+ WI
Sbjct: 565 TNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQT 624
Query: 743 KQQ---LLSVEDYG 753
K + +S+E +G
Sbjct: 625 KMEEIGRISIEMHG 638
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 8/192 (4%)
Query: 889 NITTLKDQLVASNHDQTPAIVKRHGDVIA----RWQKLLGDSNARKQRLLRMQEQFRQIE 944
N TL+ +L SN PA + G +++ W L ++ LL + +++
Sbjct: 313 NFNTLQTKLRLSNR---PAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLD 369
Query: 945 DLYLTFAKKASSFNSWFENAEEDLTDP-VRCNSIEEIRALREXXXXXXXXXXXXXXDFEA 1003
L F +KAS SW + E L ++ EI+AL + E
Sbjct: 370 HLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQ 429
Query: 1004 LAALDQQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKE 1063
+AA+ Q++ + +P + + D W NL + ++R L + + D L E
Sbjct: 430 IAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLE 489
Query: 1064 FAKHANAFHQWL 1075
+AK A F+ W+
Sbjct: 490 YAKRAAPFNNWM 501
>pdb|2SPC|A Chain A, Crystal Structure Of The Repetitive Segments Of Spectrin
pdb|2SPC|B Chain B, Crystal Structure Of The Repetitive Segments Of Spectrin
Length = 107
Score = 159 bits (403), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/107 (72%), Positives = 92/107 (85%)
Query: 297 QCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIG 356
Q L+LQL+ RDCE AE+WMSAREAFLNA++ + NVEALIKKHEDFDKAIN HE+KI
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 357 ALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGE 403
ALQT+ADQLIA +HYA+ +D+KRKQVL+RWR LKE LIEKRSRLG+
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 835 FMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLK 894
+M ++ ESW++ +E + +++ V+ L+ K E FD ++ E + I + T+
Sbjct: 8 YMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQK-IAALQTVA 66
Query: 895 DQLVASNHDQTPAIVKRHGDVIARWQKL 922
DQL+A NH + + ++ V+ RW+ L
Sbjct: 67 DQLIAQNHYASNLVDEKRKQVLERWRHL 94
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 527 WLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDA 586
W+ E+ L ++D +V+ LIKKH+ + I H+ +I + AD LI + +
Sbjct: 18 WMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYAS 77
Query: 587 SSIQEKRQSINERYERIKNLAAHRQARLNE 616
+ + EKR+ + ER+ +K +++RL +
Sbjct: 78 NLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 722 ESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCA 781
++L Q ++ E E+W+S ++ L+ +D + V+ L+KKH+ F+ + H + A
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 782 DICSAGNKLIEAKNHHADSIT 802
+ + ++LI A+NH+A ++
Sbjct: 61 ALQTVADQLI-AQNHYASNLV 80
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%)
Query: 192 SYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQA 251
+ DLQ ++ D SW+++ +++D+ AN EAL+++H++ I+ A
Sbjct: 2 NLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAA 61
Query: 252 FDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQL 295
QL+ HYAS + +K + E L++ I +R +L
Sbjct: 62 LQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRL 105
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%)
Query: 88 EVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLD 147
++Q + RD + + W+ ++ LN +D +V+AL +KHE ++ + KI L
Sbjct: 4 DLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQ 63
Query: 148 ETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLD 191
A++L+ + + K+K++ E W L ++ +L D
Sbjct: 64 TVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%)
Query: 620 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQE 679
L + RD ESW+ ++ + +DD V+ L KKH+ + + H+ I +Q
Sbjct: 5 LQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQT 64
Query: 680 TGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQ 711
++L+ ++ ++++ K + + W LK+
Sbjct: 65 VADQLIAQNHYASNLVDEKRKQVLERWRHLKE 96
>pdb|1AJ3|A Chain A, Solution Structure Of The Spectrin Repeat, Nmr, 20
Structures
Length = 110
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 92/110 (83%)
Query: 612 ARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQ 671
A+LNE++ LHQFFRD+ DEESWIKEKKLLV S+DYGRDLTGVQNL+KKHKRLEAELA+H+
Sbjct: 1 AKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 60
Query: 672 PAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLD 721
PAIQ V +TG+KL D + +G EI+QRL W ELKQLAA RGQ+L+
Sbjct: 61 PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE 110
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 399 SRLGESQTLQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANA 457
++L ES L QF RD D+ E+WI EK L + E Y +D +Q+ +KH+ EAELAA+
Sbjct: 1 AKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 60
Query: 458 DRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKL 508
IQ VL G+ L D +G EE +Q RLA D W+ L Q + +L
Sbjct: 61 PAIQGVLDTGKKLSDD-NTIGKEE-IQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%)
Query: 719 KLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRD 778
KL+ES F +++EE+WI EK+ L+S EDYG + VQ L KKH E + + H
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 779 RCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKL 826
+ G KL + + I QR Q L LA R +L
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%)
Query: 507 KLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDD 566
KL E+++ + + D + W+ E + L++SED G+DL VQNL KKH+ +EA++ AH+
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 567 RIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARL 614
I+ + L D IQ++ + ++ +K LAA R RL
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 61/109 (55%)
Query: 81 TQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALG 140
+L +H + +F RD+D+ + WI+EK +++ D G+DL VQ L++KH+ LE +LAA
Sbjct: 1 AKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 60
Query: 141 DKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKL 189
I+ + +T +L + E+ + + + W +L A R ++L
Sbjct: 61 PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 824 TKLMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFE 883
KL ++ QF D ESWI +K+ V SE+YGRDL+ VQ L K + +A L A E
Sbjct: 1 AKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 60
Query: 884 HEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRL 933
IQ + +L N I +R + W++L + AR QRL
Sbjct: 61 -PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%)
Query: 188 KLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTG 247
KL +S+ L +F D D SWI LVSS++ D+TG + L ++H+ E+ A
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 248 TFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLD 296
Q G++L EIQ +L + ++L++ AR +L+
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE 110
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%)
Query: 294 QLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEE 353
+L++ L F+RD + E+W+ ++ +++E+ V+ L KKH+ + + AHE
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 354 KIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRL 401
I + +L + + I + Q +D W+ LK+ + RL
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 6 QDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLM---SLGQTEAALKIQTQL 62
+D G DL V+ ++KK +++L A+E + + + +L ++G+ E IQ +L
Sbjct: 33 EDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE----IQQRL 88
Query: 63 QDLNQKWTSLQQLTAERATQL 83
W L+QL A R +L
Sbjct: 89 AQFVDHWKELKQLAAARGQRL 109
>pdb|3EDV|A Chain A, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
pdb|3EDV|B Chain B, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
Length = 323
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 157/288 (54%), Gaps = 4/288 (1%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDL-KANEVRLAEMNEIAMQLMSLGQTEAALKIQTQ 61
A ++G+D E V ++Q++F +F D + R+ +N +A +L++ G ++AA I
Sbjct: 29 AGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAA-TIAEW 87
Query: 62 LQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRS 121
LN+ W L +L R L +++E+ +F+ D E IQ+K + L +LG+D +
Sbjct: 88 KDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPE-ELGRDQNT 146
Query: 122 VQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHP-ETAEQTYAKQKEINEEWTQLTA 180
V+ LQR H E D+ ALG ++RQL E A RL + + A+ ++ E+ E W L
Sbjct: 147 VETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLD 206
Query: 181 KANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRT 240
+R+ +L+D+ D RF S RDLM W+ ++ + + E DV+ E L+ HQ +
Sbjct: 207 ACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKA 266
Query: 241 EIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAW 288
EIDAR +F G+ LL HYAS EI++KL L E R+++ W
Sbjct: 267 EIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKW 314
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 145/298 (48%), Gaps = 8/298 (2%)
Query: 306 RDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAI-NAHEEKIGALQTLADQ 364
R+ + E W++ RE + E+ ++V L ++ +F + N +E++ + LAD+
Sbjct: 13 REVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADE 72
Query: 365 LIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSR-LGESQTLQQFSRDADEMENWIAE 423
LI + H A I + + + + W L E LI+ R++ L S L +F DA E+ I +
Sbjct: 73 LINSGHSDAATIAEWKDGLNEAWADLLE-LIDTRTQILAASYELHKFYHDAKEIFGRIQD 131
Query: 424 KLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEA- 482
K + EE +D +++ + H FE ++ A +++ + L + ++A
Sbjct: 132 KHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARL---QAAYAGDKAD 188
Query: 483 -VQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSG 541
+Q R + + W+ L + ++L + + + + V+DL W+ +V + +++
Sbjct: 189 DIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKP 248
Query: 542 KDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINER 599
+D++SV+ L+ HQ ++A+I A +D SL+ + + I+EK + E+
Sbjct: 249 RDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEK 306
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 142/313 (45%), Gaps = 16/313 (5%)
Query: 87 HEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALG-DKIRQ 145
H + + +R+VD+ + WI E++ +++LG+D V LQ + RD +G +++
Sbjct: 6 HRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDT 65
Query: 146 LDETANRLMQT-HPETAEQTYAKQKE-INEEWTQLTAKANTRKEKLLDSYDLQRFLSDYR 203
++ A+ L+ + H + A T A+ K+ +NE W L +TR + L SY+L +F D +
Sbjct: 66 VNHLADELINSGHSDAA--TIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAK 123
Query: 204 DLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAF--DLFGQQLLQ 261
++ I + +EL D E L H +I A + D Q
Sbjct: 124 EIFGRIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAY 182
Query: 262 SGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAF 321
+G A +IQ + + EA + L A +RR++L + F+ WM
Sbjct: 183 AGDKAD-DIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQ 241
Query: 322 LNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPID---- 377
+ A+E +VE L+ H+ I+A + L L+A HYA++ I
Sbjct: 242 IEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLL 301
Query: 378 ---DKRKQVLDRW 387
+KRK+++D+W
Sbjct: 302 QLTEKRKEMIDKW 314
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 7/292 (2%)
Query: 521 VKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADI-QAHDDRIKDMNGQADSLI 579
V DL+ W+ E E + S + G+D V L ++ + D +R+ +N AD LI
Sbjct: 15 VDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELI 74
Query: 580 DSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWI--KEK 637
+SG DA++I E + +NE + + L R L + LH+F+ D + I K K
Sbjct: 75 NSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHK 134
Query: 638 KLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDV-SNLGVPEIE 696
KL ++ GRD V+ L++ H E ++ + ++ +QE +L + +I+
Sbjct: 135 KL---PEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQ 191
Query: 697 QRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTM 756
+R + +AW L +R +L ++ F + V + W+ + + + ++ +
Sbjct: 192 KRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDV 251
Query: 757 AAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQL 808
++V+ L+ H + + D G L+ K++ ++ I ++ QL
Sbjct: 252 SSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQL 303
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 124/285 (43%), Gaps = 4/285 (1%)
Query: 620 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS-HQPAIQNVQ 678
L Q R++ D E WI E++++ GS + G+D V L+++ + + + Q + V
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 679 ETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEA 738
++L++ + I + LN+AW++L +L R Q L S F +E
Sbjct: 68 HLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFG 127
Query: 739 WISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEA-KNHH 797
I +K + L E+ G V+ L + H FE D + + +L A
Sbjct: 128 RIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDK 186
Query: 798 ADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEE 857
AD I +R ++ +L+ R+ +L+D +F + W+ D ++++E
Sbjct: 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQE 246
Query: 858 YGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNH 902
RD+S+V+ L+ + A + A ++ L L+A H
Sbjct: 247 KPRDVSSVELLMNNHQGIKAEIDA-RNDSFTTCIELGKSLLARKH 290
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 145/315 (46%), Gaps = 24/315 (7%)
Query: 407 LQQFSRDADEMENWIAEKLQLA-TEESYKDPANIQSKHQKHQAFEAELA-ANADRIQSVL 464
L Q +R+ D++E WIAE+ +A + E +D ++ ++ + F + +R+ +V
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 465 AMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDL 524
+ LI+ G +A A+IA +W+ + L+L + Q +AA +L
Sbjct: 68 HLADELINS----GHSDA-----ATIA-EWKDGLNEAWADLLELIDTRTQ--ILAASYEL 115
Query: 525 DFWLGEVESLLT---------SEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQA 575
+ + + + E+ G+D +V+ L + H E DIQA +++ + A
Sbjct: 116 HKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDA 175
Query: 576 DSLIDSGQFD-ASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWI 634
L + D A IQ++ + E ++ + + R+ RL + +FF + D W+
Sbjct: 176 ARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWM 235
Query: 635 KEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPE 694
++ + + + RD++ V+ L H+ ++AE+ + + E G+ L+ + E
Sbjct: 236 EDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEE 295
Query: 695 IEQRLKLLNQAWSEL 709
I+++L L + E+
Sbjct: 296 IKEKLLQLTEKRKEM 310
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 21/229 (9%)
Query: 732 KVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDF-SVHRDRCADICSAGNKL 790
+V++ E WI+E++ + + G V L ++ F D ++ ++R + ++L
Sbjct: 14 EVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADEL 73
Query: 791 IEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKE 850
I + + A +I + L +L+ L R L + +F A + I DK
Sbjct: 74 INSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKH 133
Query: 851 THVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQL--------VASNH 902
+ EE GRD +TV+TL TF EH+ IQ + T QL A
Sbjct: 134 KKL-PEELGRDQNTVETLQRMHTTF-------EHD-IQALGTQVRQLQEDAARLQAAYAG 184
Query: 903 DQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFR---QIEDLYL 948
D+ I KR +V+ W+ LL +R+ RL+ ++FR + DL L
Sbjct: 185 DKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLML 233
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 88/193 (45%), Gaps = 7/193 (3%)
Query: 6 QDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDL 65
+++G D VE +Q+ F+ D++A ++ ++ E A +L + + A IQ + ++
Sbjct: 138 EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEV 197
Query: 66 NQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQAL 125
+ W SL R +L + RF V + W+++ + + +D+ SV+ L
Sbjct: 198 LEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELL 257
Query: 126 QRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTR 185
H+G++ ++ A D E L+ A + YA + EI E+ QLT K
Sbjct: 258 MNNHQGIKAEIDARNDSFTTCIELGKSLL------ARKHYASE-EIKEKLLQLTEKRKEM 310
Query: 186 KEKLLDSYDLQRF 198
+K D ++ R
Sbjct: 311 IDKWEDRWEWLRL 323
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin
pdb|1HCI|B Chain B, Crystal Structure Of The Rod Domain Of Alpha-Actinin
Length = 476
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 177/343 (51%), Gaps = 13/343 (3%)
Query: 834 QFMWKADVVESWIADKETHVKSEEY-GRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITT 892
+F KA E+W KE + ++Y L+ V+ LL K E F++ L A + + ++ I
Sbjct: 135 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQ-DRVEQIAA 193
Query: 893 LKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAK 952
+ +L ++ + R + +W +L + R++ L RM++ I+ L+L FAK
Sbjct: 194 IAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAK 253
Query: 953 KASSFNSWFENAEEDLTDPVRCNSIEEIRALREXXXXXXXXXXXXXXDFEALAALDQQ-- 1010
+A+ FN+W E A EDL D +SIEEI++L + +++ A+ +
Sbjct: 254 RAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVE 313
Query: 1011 --IKSFNV---GPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFA 1065
I+S+N+ NPY+ TM+ L W +++++ RD L +E RQ N+ LR++FA
Sbjct: 314 KVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFA 373
Query: 1066 KHANAFHQW----LTETRTSMMEGTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILE 1121
ANA W + E S ++ TG+LE Q+ +K+ + + ++++ K+E +++
Sbjct: 374 AQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQ 433
Query: 1122 EHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARN 1164
E L+ DN++T ++ + W+ L R + +E QI R+
Sbjct: 434 EALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRD 476
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 27/261 (10%)
Query: 729 FLAKVEEEEAWISEKQQLLSVEDY-GDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAG 787
F K E W K+Q+L +DY ++ V+ LL+KH+AFE+D + H+DR I +
Sbjct: 136 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 195
Query: 788 NKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRK------TKLMD--NSAYLQFMWKA 839
+L E H A ++ RCQ++ + D L L KR+ KL++ + +L+F +A
Sbjct: 196 QELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRA 255
Query: 840 DVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHE-----GIQN----- 889
+W+ ++ + +Q+L+T E F A L + E IQN
Sbjct: 256 APFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKV 315
Query: 890 ITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQ--IEDLY 947
I + ++ +SN P ++ +W K+ R Q L +E RQ E L
Sbjct: 316 IQSYNIRISSSN----PYSTVTMDELRTKWDKVKQLVPIRDQSL--QEELARQHANERLR 369
Query: 948 LTFAKKASSFNSWFENAEEDL 968
FA +A++ W +N E++
Sbjct: 370 RQFAAQANAIGPWIQNKMEEI 390
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 91/389 (23%), Positives = 162/389 (41%), Gaps = 49/389 (12%)
Query: 392 EALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFE- 450
E L+E+ RL S+ L+ R +EN EK A ++ +D + + KH+ + E
Sbjct: 10 ERLMEEYERLA-SELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEK 68
Query: 451 AELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQ----------- 499
+L N + +Q+ L I R E ++ IA W+ L Q
Sbjct: 69 CQLEINFNTLQTKLR-----ISNRPAFMPSEG--KMVSDIAGAWQRLEQAEKGYEEWLLN 121
Query: 500 --KTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLV 557
+ E+ L E +Q+ A + G+ + LL + L V+ L++KH+
Sbjct: 122 EIRRLERLEHLAEKFRQK----ASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAF 177
Query: 558 EADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEA 617
E+D+ AH DR++ + A L + DA ++ ++ Q I ++++R+ L R+ L
Sbjct: 178 ESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERM 237
Query: 618 -------NTLH-QFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELA- 668
+ LH +F + A +W++ + + +Q+L H++ +A L
Sbjct: 238 EKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPE 297
Query: 669 --SHQPAIQNVQETGEKLMDVSNLGV----PEIEQRLKLLNQAWSELKQLAANRGQKLDE 722
+ +I +Q EK++ N+ + P + L W ++KQL R Q L E
Sbjct: 298 ADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQE 357
Query: 723 SLTYQH--------FLAKVEEEEAWISEK 743
L QH F A+ WI K
Sbjct: 358 ELARQHANERLRRQFAAQANAIGPWIQNK 386
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 153/323 (47%), Gaps = 38/323 (11%)
Query: 179 TAKANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEH 238
++ N E+L++ Y+ R S+ L+ WI + + + + + LE +++
Sbjct: 2 SSAVNQENERLMEEYE--RLASE---LLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDY 56
Query: 239 R-----TEIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKL-GNLAEAREDLEKA----- 287
R ++ + F+ +L S A + + K+ ++A A + LE+A
Sbjct: 57 RRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYE 116
Query: 288 -WIARRMQLDQCLE--LQLFYRDCEQAENWMSAREAFLNAEEVDSKT-DNVEALIKKHED 343
W+ ++ + LE + F + E W +E L ++ +S + V AL++KHE
Sbjct: 117 EWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEA 176
Query: 344 FDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLL-------KEALIE 396
F+ + AH++++ + +A +L D++ A ++D+ +++ D+W L +EAL E
Sbjct: 177 FESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREAL-E 235
Query: 397 KRSRLGES--QTLQQFSRDADEMENWI---AEKLQ-LATEESYKDPANIQSKHQKHQAFE 450
+ +L E+ Q +F++ A NW+ E LQ + S ++ IQS H+ F+
Sbjct: 236 RMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEE---IQSLITAHEQFK 292
Query: 451 AELAANADRIQSVLAMGQNLIDK 473
A L QS++A+ QN ++K
Sbjct: 293 ATLPEADGERQSIMAI-QNEVEK 314
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 9/175 (5%)
Query: 87 HEVQRFHRDVDETKDWIQEKDEALNNNDL-GKDLRSVQALQRKHEGLERDLAALGDKIRQ 145
H ++F + + W K++ L D L V+AL RKHE E DLAA D++ Q
Sbjct: 131 HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQ 190
Query: 146 LDETANRLMQTHPETAEQTYAKQKEINEEW------TQLTAKANTRKEKLLDSYDLQR-- 197
+ A L + A + ++I ++W TQ +A R EKLL++ D
Sbjct: 191 IAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLE 250
Query: 198 FLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAF 252
F +W+ M + + + + ++L+ H++ + + G Q+
Sbjct: 251 FAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSI 305
>pdb|3F31|A Chain A, Crystal Structure Of The N-Terminal Region Of
Alphaii-Spectr Tetramerization Domain
pdb|3F31|B Chain B, Crystal Structure Of The N-Terminal Region Of
Alphaii-Spectr Tetramerization Domain
Length = 149
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
Query: 372 AAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEE 431
A+ I ++R+QVLDR+ KE +R +L +S Q F RDA+E+E WI EKLQ+A++E
Sbjct: 13 TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDE 72
Query: 432 SYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIA 491
+YKDP N+Q K QKHQAFEAE+ AN+ I + G +I + + E ++ RL +
Sbjct: 73 NYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHF--ASETIRTRLMELH 130
Query: 492 DQWEFLTQKTTEKSLKL 508
QWE L +K EK +KL
Sbjct: 131 RQWELLLEKMREKGIKL 147
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 586 ASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDD 645
A IQE+RQ + +RY R K L+ R+ +L ++ F RD + E WI+EK L + SD+
Sbjct: 14 AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEK-LQIASDE 72
Query: 646 YGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQA 705
+D T +Q +KH+ EAE+ ++ AI + ETG ++ + I RL L++
Sbjct: 73 NYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQ 132
Query: 706 WSELKQLAANRGQKL 720
W L + +G KL
Sbjct: 133 WELLLEKMREKGIKL 147
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 685 MDVSNLGVPE----IEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWI 740
MD S + V E I++R + + + K+L+ R QKL++S +Q F EE E WI
Sbjct: 3 MDPSGVKVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWI 62
Query: 741 SEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADS 800
EK Q+ S E+Y D +QG L+KH AFE + + + GN +I + +++
Sbjct: 63 QEKLQIASDENYKDP-TNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASET 121
Query: 801 ITQRCQQLQLKLDNLMALATKRKTKLM 827
I R +L + + L+ ++ KL+
Sbjct: 122 IRTRLMELHRQWELLLEKMREKGIKLL 148
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 159 ETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSS 218
ETAE +++++ + + + + R++KL DSY Q F D +L WI + ++S
Sbjct: 12 ETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQ-IAS 70
Query: 219 DELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNL 277
DE D T + L++HQ E+ A +G D G ++ GH+AS I+ +L L
Sbjct: 71 DENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMEL 129
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Query: 53 EAALKIQTQLQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNN 112
E A IQ + Q + ++ ++L+ R +L ++ Q F RD +E + WIQEK + ++
Sbjct: 12 ETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASD 71
Query: 113 NDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEIN 172
+ KD ++Q +KH+ E ++ A I +LDET N ++ +E + E++
Sbjct: 72 ENY-KDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELH 130
Query: 173 EEWTQLTAKANTRKEKLL 190
+W L K + KLL
Sbjct: 131 RQWELLLEKMREKGIKLL 148
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 291 RRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINA 350
RR +L+ Q F RD E+ E W+ + + E T N++ ++KH+ F+ + A
Sbjct: 38 RRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDENYKDPT-NLQGKLQKHQAFEAEVQA 96
Query: 351 HEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRL 401
+ I L + +I+ H+A++ I + ++ +W LL E + EK +L
Sbjct: 97 NSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELLLEKMREKGIKL 147
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 475 QCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESL 534
+ + + E +Q R + D++ + +T + KL+++ + + + ++L+ W+ E +
Sbjct: 9 KVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQE-KLQ 67
Query: 535 LTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQ 594
+ S+++ KD ++Q ++KHQ EA++QA+ I ++ + +I G F + +I+ +
Sbjct: 68 IASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLM 127
Query: 595 SINERYE 601
++ ++E
Sbjct: 128 ELHRQWE 134
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 6/150 (4%)
Query: 785 SAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVES 844
+G K++E A+ I +R QQ+ + L+T R+ KL D+ + F A+ +E
Sbjct: 5 PSGVKVLET----AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEK 60
Query: 845 WIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQ 904
WI +K + S+E +D + +Q L K + F+A + A I + + +++ H
Sbjct: 61 WIQEK-LQIASDENYKDPTNLQGKLQKHQAFEAEVQA-NSGAIVKLDETGNLMISEGHFA 118
Query: 905 TPAIVKRHGDVIARWQKLLGDSNARKQRLL 934
+ I R ++ +W+ LL + +LL
Sbjct: 119 SETIRTRLMELHRQWELLLEKMREKGIKLL 148
>pdb|3LBX|B Chain B, Crystal Structure Of The Erythrocyte Spectrin
Tetramerization Domain Complex
Length = 185
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 94/163 (57%)
Query: 197 RFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFG 256
RF S RDL+SW+ S++ + + E DV+ E L++ HQ EI+ R+ F A G
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELG 67
Query: 257 QQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMS 316
+ LLQ H AS EI++KL + R+++ + W AR +L LE+ F RD AE W+
Sbjct: 68 ESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLI 127
Query: 317 AREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQ 359
A+E +L + + D+VE LIK+HE F+K+ + E+ AL+
Sbjct: 128 AQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALE 170
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%)
Query: 517 YIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQAD 576
+ + +DL W+ + + +++ +D++SV+ L+K HQ + A+I+ +
Sbjct: 9 FFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGE 68
Query: 577 SLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKE 636
SL+ + I+EK Q + R + + R RL + QF RD + E+W+
Sbjct: 69 SLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIA 128
Query: 637 KKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS 669
++ + S D+G + V+ L K+H+ E AS
Sbjct: 129 QEPYLASGDFGHTVDSVEKLIKRHEAFEKSTAS 161
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 78/162 (48%)
Query: 622 QFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETG 681
+FF D SW++ + + + RD++ V+ L K H+ + AE+ + E G
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELG 67
Query: 682 EKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWIS 741
E L+ + EI ++L+ + E+ + R ++L L F EAW+
Sbjct: 68 ESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLI 127
Query: 742 EKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADI 783
++ L+ D+G T+ +V+ L+K+H+AFE + +R A +
Sbjct: 128 AQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAAL 169
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 313 NWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYA 372
+WM + + +E +VE L+K H+ + I + A L + L+ H A
Sbjct: 18 SWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQA 77
Query: 373 AKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENW-IAEKLQLATEE 431
++ I +K +QV+ R + + E + RL + QFSRDA E W IA++ LA+ +
Sbjct: 78 SEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGD 137
Query: 432 SYKDPANIQSKHQKHQAFEAELAANADRIQSV 463
+++ ++H+AFE A+ A+R ++
Sbjct: 138 FGHTVDSVEKLIKRHEAFEKSTASWAERFAAL 169
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 4 QVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQ 63
+ Q+ D+ VE++ K ++++ + E+ L+ Q +A+ +I+ +LQ
Sbjct: 28 ETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQ-RQHQASEEIREKLQ 86
Query: 64 -------DLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLG 116
++N+KW + R +L EV +F RD + W+ ++ L + D G
Sbjct: 87 QVMSRRKEMNEKWEA-------RWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFG 139
Query: 117 KDLRSVQALQRKHEGLERDLAALGDKIRQLDETAN 151
+ SV+ L ++HE E+ A+ ++ L++
Sbjct: 140 HTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTT 174
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 409 QFSRDADEMENWIAEKL-QLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMG 467
+F A ++ +W+ + Q+ T+E +D ++++ + HQ AE+ + + L +G
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELG 67
Query: 468 QNLIDKRQCVGSEEA------VQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAV 521
++L+ +RQ SEE V +R + ++WE ++ L++ Q + A+V
Sbjct: 68 ESLL-QRQHQASEEIREKLQQVMSRRKEMNEKWEARWER-----LRMLLEVCQFSRDASV 121
Query: 522 KDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRI 568
+ WL E L S D G + SV+ LIK+H+ E + +R
Sbjct: 122 AEA--WLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERF 166
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 14/160 (8%)
Query: 84 GSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKI 143
GS + RF + W++ + + +D+ SV+ L + H+G+ ++
Sbjct: 1 GSTADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNF 60
Query: 144 RQLDETANRLMQTHPETAE-------QTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQ 196
E L+Q + +E Q +++KE+NE+W R E+L ++
Sbjct: 61 SACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKW-------EARWERLRMLLEVC 113
Query: 197 RFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQ 236
+F D +W+ + ++S + + V E L++RH+
Sbjct: 114 QFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHE 153
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/139 (17%), Positives = 63/139 (45%)
Query: 738 AWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHH 797
+W+ + + ++ +++V+ L+K H + + G L++ ++
Sbjct: 18 SWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQA 77
Query: 798 ADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEE 857
++ I ++ QQ+ + + R +L QF A V E+W+ +E ++ S +
Sbjct: 78 SEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGD 137
Query: 858 YGRDLSTVQTLLTKQETFD 876
+G + +V+ L+ + E F+
Sbjct: 138 FGHTVDSVEKLIKRHEAFE 156
>pdb|1QUU|A Chain A, Crystal Structure Of Two Central Spectrin-Like Repeats From
Alpha-Actinin
Length = 250
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 118/233 (50%), Gaps = 9/233 (3%)
Query: 834 QFMWKADVVESWIADKETHVKSEEY-GRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITT 892
+F KA E+W KE + ++Y L+ V+ LL K E F++ L A + + ++ I
Sbjct: 18 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQ-DRVEQIAA 76
Query: 893 LKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAK 952
+ +L ++ + R + +W +L + R++ L RM++ I+ L+L FAK
Sbjct: 77 IAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAK 136
Query: 953 KASSFNSWFENAEEDLTDPVRCNSIEEIRALREXXXXXXXXXXXXXXDFEALAALDQQ-- 1010
+A+ FN+W E A EDL D +SIEEI++L + +++ A+ +
Sbjct: 137 RAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVE 196
Query: 1011 --IKSFNV---GPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDEND 1058
I+S+N+ NPY+ TM+ L W +++++ RD L +E RQ N+
Sbjct: 197 KVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANE 249
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Query: 729 FLAKVEEEEAWISEKQQLLSVEDY-GDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAG 787
F K E W K+Q+L +DY ++ V+ LL+KH+AFE+D + H+DR I +
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 78
Query: 788 NKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRK------TKLMD--NSAYLQFMWKA 839
+L E H A ++ RCQ++ + D L L KR+ KL++ + +L+F +A
Sbjct: 79 QELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRA 138
Query: 840 DVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGL 879
+W+ ++ + +Q+L+T E F A L
Sbjct: 139 APFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATL 178
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 27/221 (12%)
Query: 529 GEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASS 588
G+ + LL + L V+ L++KH+ E+D+ AH DR++ + A L + DA +
Sbjct: 32 GKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVN 91
Query: 589 IQEKRQSINERYERIKNLAAHRQARLNEA-------NTLH-QFFRDIADEESWIK----- 635
+ ++ Q I ++++R+ L R+ L + LH +F + A +W++
Sbjct: 92 VNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMED 151
Query: 636 -EKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELA---SHQPAIQNVQETGEKLMDVSNLG 691
+ +V S + +Q+L H++ +A L + +I +Q EK++ N+
Sbjct: 152 LQDMFIVHS------IEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIR 205
Query: 692 V----PEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQH 728
+ P + L W ++KQL R Q L E L QH
Sbjct: 206 ISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQH 246
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 13/181 (7%)
Query: 304 FYRDCEQAENWMSAREAFLNAEEVDSKT-DNVEALIKKHEDFDKAINAHEEKIGALQTLA 362
F + E W +E L ++ +S + V AL++KHE F+ + AH++++ + +A
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 78
Query: 363 DQLIAADHYAAKPIDDKRKQVLDRWRLL-------KEALIEKRSRLGES--QTLQQFSRD 413
+L D++ A ++D+ +++ D+W L +EAL E+ +L E+ Q +F++
Sbjct: 79 QELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREAL-ERMEKLLETIDQLHLEFAKR 137
Query: 414 ADEMENWIAEKLQ-LATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLID 472
A NW+ ++ L IQS H+ F+A L QS++A+ QN ++
Sbjct: 138 AAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAI-QNEVE 196
Query: 473 K 473
K
Sbjct: 197 K 197
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 9/175 (5%)
Query: 87 HEVQRFHRDVDETKDWIQEKDEALNNNDL-GKDLRSVQALQRKHEGLERDLAALGDKIRQ 145
H ++F + + W K++ L D L V+AL RKHE E DLAA D++ Q
Sbjct: 14 HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQ 73
Query: 146 LDETANRLMQTHPETAEQTYAKQKEINEEW------TQLTAKANTRKEKLLDSYDLQR-- 197
+ A L + A + ++I ++W TQ +A R EKLL++ D
Sbjct: 74 IAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLE 133
Query: 198 FLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAF 252
F +W+ M + + + + ++L+ H++ + + G Q+
Sbjct: 134 FAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSI 188
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 25/240 (10%)
Query: 924 GDSNA--RKQRLLRMQEQFRQIEDLYLTFAKKASSFNSWFENAEEDLTDP-VRCNSIEEI 980
G SN R +RL + E+FRQ KAS+ +W E+ L S+ E+
Sbjct: 1 GSSNEIRRLERLEHLAEKFRQ----------KASTHETWAYGKEQILLQKDYESASLTEV 50
Query: 981 RALREXXXXXXXXXXXXXXDFEALAALDQQIKSFNVGPNPYTWFTMEALEDTWRNLQKII 1040
RAL E +AA+ Q++ + + + D W L +
Sbjct: 51 RALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLT 110
Query: 1041 KERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSM--------MEGTGSLEQQ 1092
++R L + + D L EFAK A F+ W+ + +E SL
Sbjct: 111 QKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITA 170
Query: 1093 LEAIKRKAAEVRSRRSDLKKIED-LGAILEEHLILDNRYTEHSTVG---LAQQWDQLDQL 1148
E K E R + I++ + +++ + I + +STV L +WD++ QL
Sbjct: 171 HEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQL 230
>pdb|3KBU|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
pdb|3KBU|B Chain B, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
Length = 326
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 3/322 (0%)
Query: 511 ANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKD 570
AN+ + Y + + W+GE E + S++ KD ++K+H + ++ + IK
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQ 62
Query: 571 MNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADE 630
+ +A L+ +G + I + +++ Y +K++A R+ +L L Q R+ D
Sbjct: 63 LASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDL 122
Query: 631 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS-HQPAIQNVQETGEKLMDVSN 689
E WI EK+L+ S + G+D V L+ K + E + Q + NV E+L+D +
Sbjct: 123 EQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGH 182
Query: 690 LGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSV 749
I + LN+ W++L +L R Q L S + E I EK + L
Sbjct: 183 SEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP- 241
Query: 750 EDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEA-KNHHADSITQRCQQL 808
ED G + + + H AFE D + + +L A A++I + Q++
Sbjct: 242 EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEV 301
Query: 809 QLKLDNLMALATKRKTKLMDNS 830
L+ R+T+L+D +
Sbjct: 302 SAAWQALLDACAGRRTQLVDTA 323
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKA-NEVRLAEMNEIAMQLMSLGQTEAALKIQTQ 61
A ++G+D + V +++ KF DF + A + R+ +N +L+ G +EAA I
Sbjct: 133 ASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAA-TIAEW 191
Query: 62 LQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRS 121
LN+ W L +L R L +++++ R+ E I EK L D+G D +
Sbjct: 192 KDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL-PEDVGLDAST 250
Query: 122 VQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHP-ETAEQTYAKQKEINEEWTQLTA 180
++ R H ERD+ LG +++Q + A RL + E AE K++E++ W L
Sbjct: 251 AESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLD 310
Query: 181 KANTRKEKLLDSYD 194
R+ +L+D+ D
Sbjct: 311 ACAGRRTQLVDTAD 324
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 152/332 (45%), Gaps = 16/332 (4%)
Query: 617 ANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQN 676
AN Q++ D + E+WI E++L V SD+ +D G + K+H R + + + +N
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYG---RN 59
Query: 677 VQETGEKLMDVSNLGVPEIEQRLKLLNQA---WSELKQLAANRGQKLDESLTYQHFLAKV 733
+++ + + + G PE EQ ++L Q ++ LK +A R +KL+ Y F K
Sbjct: 60 IKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVACERKRKLEN--MYHLFQLKR 117
Query: 734 EEE--EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDF-SVHRDRCADICSAGNKL 790
E + E WISEK+ + S + G V L K F + ++ ++R ++ + +L
Sbjct: 118 ETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERL 177
Query: 791 IEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKE 850
I+A + A +I + L +L+ L R L + ++ + + I +K
Sbjct: 178 IDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKH 237
Query: 851 THVKSEEYGRDLSTVQTLLTKQETFDAGLH--AFEHEGIQNITTLKDQLVASNHDQTPAI 908
+ E+ G D ST ++ F+ +H + + Q++ T A ++ AI
Sbjct: 238 REL-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAG--EKAEAI 294
Query: 909 VKRHGDVIARWQKLLGDSNARKQRLLRMQEQF 940
+ +V A WQ LL R+ +L+ ++F
Sbjct: 295 QNKEQEVSAAWQALLDACAGRRTQLVDTADKF 326
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 153/327 (46%), Gaps = 24/327 (7%)
Query: 300 ELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQ 359
E Q +Y D ++AE W+ +E ++ ++E+ + ++K+H +A+ + I L
Sbjct: 5 EAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLA 64
Query: 360 TLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMEN 419
+ A L++A H + I + QV + LK+ E++ +L L Q R+ D++E
Sbjct: 65 SRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDLEQ 124
Query: 420 WIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAA-NADRIQSVLAMGQNLIDKRQCV 477
WI+EK L ++ E +D ++ K + F E A +R+ +V A + LID
Sbjct: 125 WISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLID----A 180
Query: 478 GSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLD--FWLG-EVESL 534
G EA A+IA +W+ + L+L + Q +AA DL F+ G E+ L
Sbjct: 181 GHSEA-----ATIA-EWKDGLNEMWADLLELIDTRMQ--LLAASYDLHRYFYTGAEILGL 232
Query: 535 L------TSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD-AS 587
+ ED G D ++ ++ + H E D+ +++ A L + + A
Sbjct: 233 IDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAE 292
Query: 588 SIQEKRQSINERYERIKNLAAHRQARL 614
+IQ K Q ++ ++ + + A R+ +L
Sbjct: 293 AIQNKEQEVSAAWQALLDACAGRRTQL 319
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 147/325 (45%), Gaps = 15/325 (4%)
Query: 85 SAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIR 144
+A+E Q+++ D DE + WI E++ + ++++ KD + ++H +R + G I+
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 145 QLDETANRLMQT-HPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYR 203
QL A L+ HPE EQ Q ++++ + L A RK KL + Y L + +
Sbjct: 62 QLASRAQGLLSAGHPE-GEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETD 120
Query: 204 DLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDA----RTGTFQAFDLFGQQL 259
DL WI+ + SS E+ D L ++ ++ E A R AF ++L
Sbjct: 121 DLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFI---ERL 177
Query: 260 LQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSARE 319
+ +GH + I + L E DL + R L +L ++ + + +
Sbjct: 178 IDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKH 237
Query: 320 AFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYA---AKPI 376
L E+V E+ + H F++ ++ ++ Q +A +L A YA A+ I
Sbjct: 238 REL-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTA--YAGEKAEAI 294
Query: 377 DDKRKQVLDRWRLLKEALIEKRSRL 401
+K ++V W+ L +A +R++L
Sbjct: 295 QNKEQEVSAAWQALLDACAGRRTQL 319
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 130/282 (46%), Gaps = 17/282 (6%)
Query: 19 QKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDLNQKWTSLQQLTAE 78
Q+ +D+ ++K ++ A L+S G E I+ Q Q +++ + L+ + E
Sbjct: 50 QRAVEDYGRNIK-------QLASRAQGLLSAGHPEGEQIIRLQGQ-VDKHYAGLKDVACE 101
Query: 79 RATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAA 138
R +L + + + + R+ D+ + WI EK+ ++ ++G+D V L+ K R+ A
Sbjct: 102 RKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGA 161
Query: 139 LG-DKIRQLDETANRLMQT-HPETAEQTYAKQKE-INEEWTQLTAKANTRKEKLLDSYDL 195
+G +++ ++ RL+ H E A T A+ K+ +NE W L +TR + L SYDL
Sbjct: 162 IGQERVDNVNAFIERLIDAGHSEAA--TIAEWKDGLNEMWADLLELIDTRMQLLAASYDL 219
Query: 196 QRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLF 255
R+ +++ I+ + D + D + AE+ H ++ Q F
Sbjct: 220 HRYFYTGAEILGLIDEKHRELPED-VGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDV 278
Query: 256 GQQL--LQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQL 295
+L +G A IQ+K ++ A + L A RR QL
Sbjct: 279 ATRLQTAYAGEKAEA-IQNKEQEVSAAWQALLDACAGRRTQL 319
>pdb|3KBT|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
pdb|3KBT|B Chain B, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
Length = 326
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 3/322 (0%)
Query: 511 ANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKD 570
AN+ + Y + + W+GE E + S++ KD ++K+H + ++ + IK
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQ 62
Query: 571 MNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADE 630
+ +A L+ +G + I + +++ Y +K++A R+ +L L Q R+ D
Sbjct: 63 LASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDL 122
Query: 631 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS-HQPAIQNVQETGEKLMDVSN 689
E WI EK+L+ S + G+D V L+ K + E + Q + NV E+L+D +
Sbjct: 123 EQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGH 182
Query: 690 LGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSV 749
I + LN+ W++L +L R Q L S + E I EK + L
Sbjct: 183 SEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP- 241
Query: 750 EDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEA-KNHHADSITQRCQQL 808
ED G + + + H AFE D + + +L A A++I + Q++
Sbjct: 242 EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEV 301
Query: 809 QLKLDNLMALATKRKTKLMDNS 830
L+ R+T+L+D +
Sbjct: 302 SAAWQALLDACAGRRTQLVDTA 323
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKA-NEVRLAEMNEIAMQLMSLGQTEAALKIQTQ 61
A ++G+D + V +++ KF DF + A + R+ +N +L+ G +EAA I
Sbjct: 133 ASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAA-TIAEW 191
Query: 62 LQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRS 121
LN+ W L +L R L +++++ R+ E I EK L D+G D +
Sbjct: 192 KDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL-PEDVGLDAST 250
Query: 122 VQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHP-ETAEQTYAKQKEINEEWTQLTA 180
++ R H ERD+ LG +++Q + A RL + E AE K++E++ W L
Sbjct: 251 AESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLD 310
Query: 181 KANTRKEKLLDSYD 194
R+ +L+D+ D
Sbjct: 311 ACAGRRTQLVDTAD 324
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 152/332 (45%), Gaps = 16/332 (4%)
Query: 617 ANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQN 676
AN Q++ D + E+WI E++L V SD+ +D G + K+H R + + + +N
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYG---RN 59
Query: 677 VQETGEKLMDVSNLGVPEIEQRLKLLNQA---WSELKQLAANRGQKLDESLTYQHFLAKV 733
+++ + + + G PE EQ ++L Q ++ LK +A R +KL+ Y F K
Sbjct: 60 IKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLEN--MYHLFQLKR 117
Query: 734 EEE--EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDF-SVHRDRCADICSAGNKL 790
E + E WISEK+ + S + G V L K F + ++ ++R ++ + +L
Sbjct: 118 ETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERL 177
Query: 791 IEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKE 850
I+A + A +I + L +L+ L R L + ++ + + I +K
Sbjct: 178 IDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKH 237
Query: 851 THVKSEEYGRDLSTVQTLLTKQETFDAGLH--AFEHEGIQNITTLKDQLVASNHDQTPAI 908
+ E+ G D ST ++ F+ +H + + Q++ T A ++ AI
Sbjct: 238 REL-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAG--EKAEAI 294
Query: 909 VKRHGDVIARWQKLLGDSNARKQRLLRMQEQF 940
+ +V A WQ LL R+ +L+ ++F
Sbjct: 295 QNKEQEVSAAWQALLDACAGRRTQLVDTADKF 326
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 151/332 (45%), Gaps = 29/332 (8%)
Query: 85 SAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIR 144
+A+E Q+++ D DE + WI E++ + ++++ KD + ++H +R + G I+
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 145 QLDETANRLMQT-HPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYR 203
QL A L+ HPE EQ Q ++++ + L A RK KL + Y L + +
Sbjct: 62 QLASRAQGLLSAGHPE-GEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETD 120
Query: 204 DLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDA----RTGTFQAFDLFGQQL 259
DL WI+ + SS E+ D L ++ ++ E A R AF ++L
Sbjct: 121 DLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFI---ERL 177
Query: 260 LQSGHYASVEIQDKLGNLAEAREDLEKAW------IARRMQ-LDQCLELQLFYRDCEQAE 312
+ +GH + I AE ++ L + W I RMQ L +L ++ +
Sbjct: 178 IDAGHSEAATI-------AEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEIL 230
Query: 313 NWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYA 372
+ + L E+V E+ + H F++ ++ ++ Q +A +L A YA
Sbjct: 231 GLIDEKHREL-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTA--YA 287
Query: 373 ---AKPIDDKRKQVLDRWRLLKEALIEKRSRL 401
A+ I +K ++V W+ L +A +R++L
Sbjct: 288 GEKAEAIQNKEQEVSAAWQALLDACAGRRTQL 319
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 153/327 (46%), Gaps = 24/327 (7%)
Query: 300 ELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQ 359
E Q +Y D ++AE W+ +E ++ ++E+ + ++K+H +A+ + I L
Sbjct: 5 EAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLA 64
Query: 360 TLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMEN 419
+ A L++A H + I + QV + LK+ E++ +L L Q R+ D++E
Sbjct: 65 SRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQ 124
Query: 420 WIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAA-NADRIQSVLAMGQNLIDKRQCV 477
WI+EK L ++ E +D ++ K + F E A +R+ +V A + LID
Sbjct: 125 WISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLID----A 180
Query: 478 GSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLD--FWLG-EVESL 534
G EA A+IA +W+ + L+L + Q +AA DL F+ G E+ L
Sbjct: 181 GHSEA-----ATIA-EWKDGLNEMWADLLELIDTRMQ--LLAASYDLHRYFYTGAEILGL 232
Query: 535 L------TSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD-AS 587
+ ED G D ++ ++ + H E D+ +++ A L + + A
Sbjct: 233 IDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAE 292
Query: 588 SIQEKRQSINERYERIKNLAAHRQARL 614
+IQ K Q ++ ++ + + A R+ +L
Sbjct: 293 AIQNKEQEVSAAWQALLDACAGRRTQL 319
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 130/282 (46%), Gaps = 17/282 (6%)
Query: 19 QKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDLNQKWTSLQQLTAE 78
Q+ +D+ ++K ++ A L+S G E I+ Q Q +++ + L+ + E
Sbjct: 50 QRAVEDYGRNIK-------QLASRAQGLLSAGHPEGEQIIRLQGQ-VDKHYAGLKDVAEE 101
Query: 79 RATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAA 138
R +L + + + + R+ D+ + WI EK+ ++ ++G+D V L+ K R+ A
Sbjct: 102 RKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGA 161
Query: 139 LG-DKIRQLDETANRLMQT-HPETAEQTYAKQKE-INEEWTQLTAKANTRKEKLLDSYDL 195
+G +++ ++ RL+ H E A T A+ K+ +NE W L +TR + L SYDL
Sbjct: 162 IGQERVDNVNAFIERLIDAGHSEAA--TIAEWKDGLNEMWADLLELIDTRMQLLAASYDL 219
Query: 196 QRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLF 255
R+ +++ I+ + D + D + AE+ H ++ Q F
Sbjct: 220 HRYFYTGAEILGLIDEKHRELPED-VGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDV 278
Query: 256 GQQL--LQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQL 295
+L +G A IQ+K ++ A + L A RR QL
Sbjct: 279 ATRLQTAYAGEKAEA-IQNKEQEVSAAWQALLDACAGRRTQL 319
>pdb|3LBX|A Chain A, Crystal Structure Of The Erythrocyte Spectrin
Tetramerization Domain Complex
Length = 161
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 372 AAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEE 431
A+ I ++R++VL R++ KE + E+ +L +S LQ F RDAD++ WI EK+ + T++
Sbjct: 23 TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDK 82
Query: 432 SYKDPANIQSKHQKHQAFEAELAANADRIQSVL 464
SY+DP NIQ K+QKHQ+ EAE+ + R+ S L
Sbjct: 83 SYEDPTNIQGKYQKHQSLEAEVQTKS-RLMSEL 114
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 586 ASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDD 645
A IQE+RQ + RY+ K A R +L ++ L F RD D WI EK ++
Sbjct: 24 AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKS 83
Query: 646 YGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGE 682
Y D T +Q +KH+ LEAE+ + + +++T E
Sbjct: 84 Y-EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTRE 119
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 53 EAALKIQTQLQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNN 112
E A +IQ + Q++ ++ S ++ AER +L ++ +Q F RD D+ WI EK L +
Sbjct: 22 ETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTD 81
Query: 113 NDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEIN 172
+D ++Q +KH+ LE ++ +T +RLM +T E+ + +
Sbjct: 82 KSY-EDPTNIQGKYQKHQSLEAEV-----------QTKSRLMSELEKTREERFTMGHSAH 129
Query: 173 EE 174
EE
Sbjct: 130 EE 131
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 159 ETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSS 218
ETAE+ +++E+ + + R +KL DSY LQ F D DL WI + ++ +
Sbjct: 22 ETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNIL-T 80
Query: 219 DELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNL 277
D+ D T + ++HQ E+ ++ + ++ GH A E + + L
Sbjct: 81 DKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEEL 139
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 672 PAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLA 731
P V+ +G K+++ + EI++R + + + K+ A RGQKL++S Q F
Sbjct: 8 PKETVVESSGPKVLETAE----EIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKR 63
Query: 732 KVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETD 772
++ WI EK +L+ + Y D +QG +KH + E +
Sbjct: 64 DADDLGKWIMEKVNILTDKSYEDP-TNIQGKYQKHQSLEAE 103
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 481 EAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDS 540
E +Q R + +++ ++ E+ KL+++ + + DL W+ E ++LT + S
Sbjct: 25 EEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILT-DKS 83
Query: 541 GKDLASVQNLIKKHQLVEADIQA 563
+D ++Q +KHQ +EA++Q
Sbjct: 84 YEDPTNIQGKYQKHQSLEAEVQT 106
>pdb|1OWA|A Chain A, Solution Structural Studies On Human Erythrocyte Alpha
Spectrin N Terminal Tetramerization Domain
Length = 156
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 372 AAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEE 431
A+ I ++R++VL R++ KE + E+ +L +S LQ F RDAD++ WI EK+ + T++
Sbjct: 20 TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDK 79
Query: 432 SYKDPANIQSKHQKHQAFEAELAANADRIQSVL 464
SY+DP NIQ K+QKHQ+ EAE+ + R+ S L
Sbjct: 80 SYEDPTNIQGKYQKHQSLEAEVQTKS-RLMSEL 111
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 586 ASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDD 645
A IQE+RQ + RY+ K A R +L ++ L F RD D WI EK ++
Sbjct: 21 AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKS 80
Query: 646 YGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGE 682
Y D T +Q +KH+ LEAE+ + + +++T E
Sbjct: 81 Y-EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTRE 116
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 53 EAALKIQTQLQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNN 112
E A +IQ + Q++ ++ S ++ AER +L ++ +Q F RD D+ WI EK L +
Sbjct: 19 ETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTD 78
Query: 113 NDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEIN 172
+D ++Q +KH+ LE ++ +T +RLM +T E+ + +
Sbjct: 79 KSY-EDPTNIQGKYQKHQSLEAEV-----------QTKSRLMSELEKTREERFTMGHSAH 126
Query: 173 EE 174
EE
Sbjct: 127 EE 128
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 159 ETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSS 218
ETAE+ +++E+ + + R +KL DSY LQ F D DL WI + ++ +
Sbjct: 19 ETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNIL-T 77
Query: 219 DELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNL 277
D+ D T + ++HQ E+ ++ + ++ GH A E + + L
Sbjct: 78 DKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEEL 136
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 672 PAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLA 731
P V+ +G K+++ + EI++R + + + K+ A RGQKL++S Q F
Sbjct: 5 PKETVVESSGPKVLETAE----EIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKR 60
Query: 732 KVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETD 772
++ WI EK +L+ + Y D +QG +KH + E +
Sbjct: 61 DADDLGKWIMEKVNILTDKSYEDP-TNIQGKYQKHQSLEAE 100
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 481 EAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDS 540
E +Q R + +++ ++ E+ KL+++ + + DL W+ E ++LT + S
Sbjct: 22 EEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILT-DKS 80
Query: 541 GKDLASVQNLIKKHQLVEADIQA 563
+D ++Q +KHQ +EA++Q
Sbjct: 81 YEDPTNIQGKYQKHQSLEAEVQT 103
>pdb|1S35|A Chain A, Crystal Structure Of Repeats 8 And 9 Of Human Erythroid
Spectrin
Length = 214
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 97/187 (51%), Gaps = 5/187 (2%)
Query: 623 FFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGE 682
F +D+ D ++W+ + V S+D L + L ++H ++ E+ HQ + Q V+E+GE
Sbjct: 5 FLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 64
Query: 683 KLMDVSNLGVPE---IEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAW 739
K+ + PE + QRL+ L+ W L ++ +R L + L +Q F ++ EA
Sbjct: 65 KV--IQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 740 ISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHAD 799
+S ++ L+ + D++ A + ++K + F +RD+ +GNKL+ N ++D
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD 182
Query: 800 SITQRCQ 806
I ++ Q
Sbjct: 183 KIKEKVQ 189
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 1/194 (0%)
Query: 196 QRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLF 255
Q FL D D +W++ V+S+++ + AE LL++H + EID ++Q
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 256 GQQLLQS-GHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENW 314
G++++Q + + +L L + L + W +R L QCL Q F +D +QAE
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 315 MSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAK 374
+S +E L E + EA I+K EDF ++ + +K+ + ++L+A + +
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD 182
Query: 375 PIDDKRKQVLDRWR 388
I +K + + DR R
Sbjct: 183 KIKEKVQLIEDRHR 196
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 1/150 (0%)
Query: 727 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 786
Q FL +++ +AW+S Q+ ++ ED +++ + LL++H + + H+D + +
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 787 GNKLIEAK-NHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESW 845
G K+I+ + + + QR + L D L + R L + +F A E+
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 846 IADKETHVKSEEYGRDLSTVQTLLTKQETF 875
++++E + E L + + K E F
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDF 152
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/191 (15%), Positives = 87/191 (45%), Gaps = 3/191 (1%)
Query: 514 QRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNG 573
++ ++ + D WL + + SED + L + L+++H ++ +I H D + +
Sbjct: 2 EQAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKE 61
Query: 574 QADSLIDSGQFDASS--IQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEE 631
+ +I GQ D + ++ + ++ ++ + + R L + +F +D E
Sbjct: 62 SGEKVI-QGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAE 120
Query: 632 SWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLG 691
+ + ++ + + L + +K + + +++ + + ++G KL+ NL
Sbjct: 121 AILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLY 180
Query: 692 VPEIEQRLKLL 702
+I+++++L+
Sbjct: 181 SDKIKEKVQLI 191
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/187 (18%), Positives = 86/187 (45%), Gaps = 3/187 (1%)
Query: 90 QRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDET 149
Q F +D+D+ + W+ +A+ + D+ + L + L ++H G++ ++ D +++ E+
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 150 ANRLMQTHPETAEQTYAKQKE-INEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSW 208
+++Q + ++ E ++ W L +R L Q F D + +
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 209 INSMMGLVSSDELANDVTGAEALLERHQEHRTEI-DARTGTFQAFDLFGQQLLQSGHYAS 267
+++ ++ E + + AEA + + ++ + + R D G +L+ G+ S
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVD-SGNKLVAEGNLYS 181
Query: 268 VEIQDKL 274
+I++K+
Sbjct: 182 DKIKEKV 188
>pdb|3F57|A Chain A, Crystal Structure Of Human Erythroid Beta Spectrin Repeats
14 And 15 (Ankyrin Binding Domain)
pdb|3F57|B Chain B, Crystal Structure Of Human Erythroid Beta Spectrin Repeats
14 And 15 (Ankyrin Binding Domain)
Length = 225
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKA-NEVRLAEMNEIAMQLMSLGQTEAALKIQTQ 61
A ++G+D + V +++ KF DF + A + R+ +N +L+ G +EAA I
Sbjct: 31 ASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAA-TIAEW 89
Query: 62 LQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRS 121
LN+ W L +L R L +++++ R+ E I EK L D+G D +
Sbjct: 90 KDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL-PEDVGLDAST 148
Query: 122 VQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHP-ETAEQTYAKQKEINEEWTQLTA 180
++ R H ERD+ LG +++Q + A RL + E AE K++E++ W L
Sbjct: 149 AESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLD 208
Query: 181 KANTRKEKLLDSYD 194
R+ +L+D+ D
Sbjct: 209 ACAGRRTQLVDTAD 222
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 3/213 (1%)
Query: 620 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAEL-ASHQPAIQNVQ 678
L Q R+ D E WI EK+L+ S + G+D V L+ K + E A Q + NV
Sbjct: 10 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 69
Query: 679 ETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEA 738
E+L+D + I + LN+ W++L +L R Q L S + E
Sbjct: 70 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILG 129
Query: 739 WISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEA-KNHH 797
I EK + L ED G + + + H AFE D + + +L A
Sbjct: 130 LIDEKHRELP-EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEK 188
Query: 798 ADSITQRCQQLQLKLDNLMALATKRKTKLMDNS 830
A++I + Q++ L+ R+T+L+D +
Sbjct: 189 AEAIQNKEQEVSAAWQALLDACAGRRTQLVDTA 221
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 9/207 (4%)
Query: 94 RDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALG-DKIRQLDETANR 152
R+ D+ + WI EK+ ++ ++G+D V L+ K R+ A+G +++ ++ R
Sbjct: 15 RETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIER 74
Query: 153 LMQT-HPETAEQTYAKQKE-INEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSWIN 210
L+ H E A T A+ K+ +NE W L +TR + L SYDL R+ +++ I+
Sbjct: 75 LIDAGHSEAA--TIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLID 132
Query: 211 SMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQL--LQSGHYASV 268
+ D + D + AE+ H ++ Q F +L +G A
Sbjct: 133 EKHRELPED-VGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEA 191
Query: 269 EIQDKLGNLAEAREDLEKAWIARRMQL 295
IQ+K ++ A + L A RR QL
Sbjct: 192 -IQNKEQEVSAAWQALLDACAGRRTQL 217
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 3/200 (1%)
Query: 523 DLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQA-HDDRIKDMNGQADSLIDS 581
DL+ W+ E E + +S + G+D V L K + + A +R+ ++N + LID+
Sbjct: 19 DLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDA 78
Query: 582 GQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLV 641
G +A++I E + +NE + + L R L + LH++F A+ I EK +
Sbjct: 79 GHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL 138
Query: 642 GSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDV-SNLGVPEIEQRLK 700
+D G D + ++ + H E ++ +Q Q+ +L + I+ + +
Sbjct: 139 -PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQ 197
Query: 701 LLNQAWSELKQLAANRGQKL 720
++ AW L A R +L
Sbjct: 198 EVSAAWQALLDACAGRRTQL 217
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 306 RDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINA-HEEKIGALQTLADQ 364
R+ + E W+S +E ++ E+ D+V L K DF + A +E++ + ++
Sbjct: 15 RETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIER 74
Query: 365 LIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEK 424
LI A H A I + + + + W L E + + L S L ++ E+ I EK
Sbjct: 75 LIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEK 134
Query: 425 LQLATEESYKDPANIQSKHQKHQAFE 450
+ E+ D + +S H+ H AFE
Sbjct: 135 HRELPEDVGLDASTAESFHRVHTAFE 160
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 8/209 (3%)
Query: 737 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAF--ETDFSVHRDRCADICSAGNKLIEAK 794
E WISEK+ + S + G V L K F ET ++ ++R ++ + +LI+A
Sbjct: 21 EQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETG-AIGQERVDNVNAFIERLIDAG 79
Query: 795 NHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVK 854
+ A +I + L +L+ L R L + ++ + + I +K +
Sbjct: 80 HSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL- 138
Query: 855 SEEYGRDLSTVQTLLTKQETFDAGLH--AFEHEGIQNITTLKDQLVASNHDQTPAIVKRH 912
E+ G D ST ++ F+ +H + + Q++ T A ++ AI +
Sbjct: 139 PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAG--EKAEAIQNKE 196
Query: 913 GDVIARWQKLLGDSNARKQRLLRMQEQFR 941
+V A WQ LL R+ +L+ ++FR
Sbjct: 197 QEVSAAWQALLDACAGRRTQLVDTADKFR 225
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 833 LQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITT 892
Q + D +E WI++KE S E G+D V L K F A E + N+
Sbjct: 11 FQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNA 70
Query: 893 LKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRL 933
++L+ + H + I + + W LL + R Q L
Sbjct: 71 FIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLL 111
>pdb|3EDU|A Chain A, Crystal Structure Of The Ankyrin-Binding Domain Of Human
Erythroid Spectrin
Length = 218
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKA-NEVRLAEMNEIAMQLMSLGQTEAALKIQTQ 61
A ++G+D + V +++ KF DF + A + R+ +N +L+ G +EAA I
Sbjct: 24 ASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAA-TIAEW 82
Query: 62 LQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRS 121
LN+ W L +L R L +++++ R+ E I EK L D+G D +
Sbjct: 83 KDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL-PEDVGLDAST 141
Query: 122 VQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHP-ETAEQTYAKQKEINEEWTQLTA 180
++ R H ER+L LG +++Q + A RL + E AE K++E++ W L
Sbjct: 142 AESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLD 201
Query: 181 KANTRKEKLLDSYD 194
R+ +L+D+ D
Sbjct: 202 ACAGRRTQLVDTAD 215
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 3/215 (1%)
Query: 618 NTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAEL-ASHQPAIQN 676
+L Q R+ D E WI EK+L+ S + G+D V L+ K + E A Q + N
Sbjct: 1 GSLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDN 60
Query: 677 VQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEE 736
V E+L+D + I + LN+ W++L +L R Q L S + E
Sbjct: 61 VNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEI 120
Query: 737 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEA-KN 795
I EK + L ED G + + + H AFE + + + +L A
Sbjct: 121 LGLIDEKHRELP-EDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAG 179
Query: 796 HHADSITQRCQQLQLKLDNLMALATKRKTKLMDNS 830
A++I + Q++ L+ R+T+L+D +
Sbjct: 180 EKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTA 214
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 3/200 (1%)
Query: 523 DLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQA-HDDRIKDMNGQADSLIDS 581
DL+ W+ E E + +S + G+D V L K + + A +R+ ++N + LID+
Sbjct: 12 DLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDA 71
Query: 582 GQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLV 641
G +A++I E + +NE + + L R L + LH++F A+ I EK +
Sbjct: 72 GHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL 131
Query: 642 GSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDV-SNLGVPEIEQRLK 700
+D G D + ++ + H E EL +Q Q+ +L + I+ + +
Sbjct: 132 -PEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQ 190
Query: 701 LLNQAWSELKQLAANRGQKL 720
++ AW L A R +L
Sbjct: 191 EVSAAWQALLDACAGRRTQL 210
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 9/207 (4%)
Query: 94 RDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALG-DKIRQLDETANR 152
R+ D+ + WI EK+ ++ ++G+D V L+ K R+ A+G +++ ++ R
Sbjct: 8 RETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIER 67
Query: 153 LMQT-HPETAEQTYAKQKE-INEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSWIN 210
L+ H E A T A+ K+ +NE W L +TR + L SYDL R+ +++ I+
Sbjct: 68 LIDAGHSEAA--TIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLID 125
Query: 211 SMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQL--LQSGHYASV 268
+ D + D + AE+ H E+ Q F +L +G A
Sbjct: 126 EKHRELPED-VGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEA 184
Query: 269 EIQDKLGNLAEAREDLEKAWIARRMQL 295
IQ+K ++ A + L A RR QL
Sbjct: 185 -IQNKEQEVSAAWQALLDACAGRRTQL 210
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 306 RDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINA-HEEKIGALQTLADQ 364
R+ + E W+S +E ++ E+ D+V L K DF + A +E++ + ++
Sbjct: 8 RETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIER 67
Query: 365 LIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEK 424
LI A H A I + + + + W L E + + L S L ++ E+ I EK
Sbjct: 68 LIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEK 127
Query: 425 LQLATEESYKDPANIQSKHQKHQAFEAEL 453
+ E+ D + +S H+ H AFE EL
Sbjct: 128 HRELPEDVGLDASTAESFHRVHTAFEREL 156
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 6/208 (2%)
Query: 737 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAF--ETDFSVHRDRCADICSAGNKLIEAK 794
E WISEK+ + S + G V L K F ET ++ ++R ++ + +LI+A
Sbjct: 14 EQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETG-AIGQERVDNVNAFIERLIDAG 72
Query: 795 NHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVK 854
+ A +I + L +L+ L R L + ++ + + I +K +
Sbjct: 73 HSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL- 131
Query: 855 SEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQL-VASNHDQTPAIVKRHG 913
E+ G D ST ++ F+ LH + +Q + +L A ++ AI +
Sbjct: 132 PEDVGLDASTAESFHRVHTAFERELHLLGVQ-VQQFQDVATRLQTAYAGEKAEAIQNKEQ 190
Query: 914 DVIARWQKLLGDSNARKQRLLRMQEQFR 941
+V A WQ LL R+ +L+ ++FR
Sbjct: 191 EVSAAWQALLDACAGRRTQLVDTADKFR 218
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%)
Query: 830 SAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQN 889
+ Q + D +E WI++KE S E G+D V L K F A E + N
Sbjct: 1 GSLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDN 60
Query: 890 ITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRL 933
+ ++L+ + H + I + + W LL + R Q L
Sbjct: 61 VNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLL 104
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 406 TLQQFSRDADEMENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAA-NADRIQSV 463
+L Q R+ D++E WI+EK L ++ E +D ++ K + F E A +R+ +V
Sbjct: 2 SLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNV 61
Query: 464 LAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKD 523
A + LID G EA A+IA +W+ + L+L + Q +AA D
Sbjct: 62 NAFIERLID----AGHSEA-----ATIA-EWKDGLNEMWADLLELIDTRMQ--LLAASYD 109
Query: 524 LD--FWLG-EVESLL------TSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQ 574
L F+ G E+ L+ ED G D ++ ++ + H E ++ +++
Sbjct: 110 LHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDV 169
Query: 575 ADSL--IDSGQFDASSIQEKRQSINERYERIKNLAAHRQARL 614
A L +G+ A +IQ K Q ++ ++ + + A R+ +L
Sbjct: 170 ATRLQTAYAGE-KAEAIQNKEQEVSAAWQALLDACAGRRTQL 210
>pdb|1WLX|A Chain A, Solution Structure Of The Third Spectrin Repeat Of Alpha-
Actinin-4
Length = 129
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 937 QEQFRQIEDLYLTFAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREXXXXXXXXXXX 996
++Q I+ L+L +AK+A+ FN+W E+A EDL D ++IEEI L
Sbjct: 4 EKQLEAIDQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPD 63
Query: 997 XXXDFEALAALD---QQIKSFN----VGPNPYTWFTMEALEDTWRNLQKIIKERDIELAK 1049
+ EA+ A+ Q+I N G NPYT T + + W +Q+++ +RD L +
Sbjct: 64 ADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHALLE 123
Query: 1050 EATRQ 1054
E ++Q
Sbjct: 124 EQSKQ 128
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 17/173 (9%)
Query: 1149 GMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLP 1208
G MQ + R+Q ++E+ + EF F FDKD G + E + +R+LG
Sbjct: 279 GAVMQKKTKGWEPTRDQ--LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG---- 332
Query: 1209 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASD 1268
+ + E + +++ VD + DG + E++ M++++ ++ S EEI AF
Sbjct: 333 ---QNPTEAELQDMINEVDADGDGTIDFPEFL-IMMARKMKDTDSEEEIREAFRVFDKDG 388
Query: 1269 RPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 389 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 437
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 114/273 (41%), Gaps = 51/273 (18%)
Query: 707 SELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKH 766
+L ++ R Q+L T +L + E WI++KQ L D+GD++ +VQ + H
Sbjct: 749 GQLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAH 808
Query: 767 ----------------------DAFETDFSVHRDRCADICSAG----------NKLIEAK 794
++ +T + + R + AG + L +A+
Sbjct: 809 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIK-REPFVAPAGLTPNEIDSTWSALEKAE 867
Query: 795 NHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVK 854
HA+++ +++LK +A+ ++ +++ +E+W K ++
Sbjct: 868 QEHAEAL-----RIELKRQKKIAVLLQKYNRILKK------------LENWATTKSVYLG 910
Query: 855 SEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGD 914
S E G ++ VQ L E FD + E + ++ ++ QL N++ P + +R
Sbjct: 911 SNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDT 970
Query: 915 VIA-RWQKLLGDSNARKQRLLRMQEQFRQIEDL 946
A +W + + K LL E+ ++IEDL
Sbjct: 971 FFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 1003
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 610 RQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNL-------KKKHKR 662
R+ RL T + + + WI +K+ + S D+G + VQ+ KK K
Sbjct: 758 REQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP 817
Query: 663 LEAELASHQPAIQNVQETGEKLMDVSNLGVP------EIEQRLKLLNQA---WSELKQLA 713
+ + S AI N +T +L+ P EI+ L +A +E ++
Sbjct: 818 PKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIE 877
Query: 714 ANRGQKLDESL-TYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETD 772
R +K+ L Y L K+E W + K L + GD++ AVQ LK +AF+ +
Sbjct: 878 LKRQKKIAVLLQKYNRILKKLEN---WATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 934
Query: 773 F-SVHRDRCADICSAGNKLIEAKNHHADSITQR 804
S+ +D+ S +L E + +T+R
Sbjct: 935 CQSLEGQSNSDLLSILAQLTELNYNGVPELTER 967
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 18/178 (10%)
Query: 72 LQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEG 131
L ++ R +LGS + + +E WI +K +L + D G + SVQ+ H+
Sbjct: 751 LARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKE 810
Query: 132 LER-DLAALGDKIRQLDETAN------RLMQTHPETAEQTYAKQKEINEEWTQL------ 178
++ + G ++ +L+ N RL++ P A EI+ W+ L
Sbjct: 811 YKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPN-EIDSTWSALEKAEQE 869
Query: 179 ---TAKANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLE 233
+ +++K + + LQ++ + L +W + + S+E + +T +A L+
Sbjct: 870 HAEALRIELKRQKKI-AVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLK 926
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 200 SDY----RDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHR-----------TEIDA 244
SDY +L+ WIN + S + + + ++ + H+E++ +E++A
Sbjct: 769 SDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEA 828
Query: 245 RTGTFQA-FDLFGQQ-LLQSGHYASVEIQDKLGNLAEA-REDLEKAWIARRMQLDQCLEL 301
+ Q L ++ + EI L +A +E E I + Q + L
Sbjct: 829 IYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLL 888
Query: 302 QLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFD 345
Q + R ++ ENW + + +L + E V+A +K E FD
Sbjct: 889 QKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFD 932
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 42/292 (14%)
Query: 457 ADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASI---ADQWEFLTQKTTEKS---LKLKE 510
AD ++ + N+ R S++A A L + +Q+ F K ++ +++E
Sbjct: 699 ADFVKRYYLLAPNV--PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEE 756
Query: 511 ANKQRT--------YIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKH-------- 554
A +QR Y+ +L W+ + ++ L S D G + SVQ+ + H
Sbjct: 757 AREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEK 816
Query: 555 ----------QLVEADIQAHDDRIKDMNGQADSLIDSGQFDAS-SIQEKRQSINERYERI 603
+ + +Q IK A + + + D++ S EK + + RI
Sbjct: 817 PPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRI 876
Query: 604 KNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRL 663
+ RQ ++ A L ++ R + E+W K + +GS++ G +T VQ K +
Sbjct: 877 E---LKRQKKI--AVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAF 931
Query: 664 EAELASHQP-AIQNVQETGEKLMDVSNLGVPEIEQRL-KLLNQAWSELKQLA 713
+ E S + + ++ +L +++ GVPE+ +R Q W+ +K A
Sbjct: 932 DGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSA 983
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 20/191 (10%)
Query: 400 RLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPA-NIQSKHQKHQAF-EAELAANA 457
RLG QT + + A+E+ WI +K + D ++QS H+ + + E
Sbjct: 761 RLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKG 820
Query: 458 DRIQSVLAMGQNLIDKRQCVGSEEAV-QARLAS--IADQWEFLTQKTTEKSLKLKEANKQ 514
+ + A+ +L K + + E V A L I W L + E + L+ K+
Sbjct: 821 QEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKR 880
Query: 515 RTYIAA--------VKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDD 566
+ IA +K L+ W L S ++G + +VQ +K +++A D
Sbjct: 881 QKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLK-------NLEAFDG 933
Query: 567 RIKDMNGQADS 577
+ + GQ++S
Sbjct: 934 ECQSLEGQSNS 944
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++NL Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 292 LGHKLEYNLPDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 340
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + DG + E++ M++++ + S EEI AF
Sbjct: 341 ----QNPTEAELQDMINEVDADGDGTIDFPEFLT-MMARKMKYTDSEEEIREAFRVFDKD 395
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 396 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 445
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++NL Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 292 LGHKLEYNLPDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 340
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + DG + E++ M++++ + S EEI AF
Sbjct: 341 ----QNPTEAELQDMINEVDADGDGTIDFPEFLT-MMARKMKYTDSEEEIREAFRVFDKD 395
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERM 1293
Y++ EL NL +++ D V+ M
Sbjct: 396 GNGYISAAELRHVMTNLGEKLTDEEVDEM 424
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal Muscle
Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal Muscle
Troponin C
Length = 162
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 12/164 (7%)
Query: 1157 EQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPD 1216
+QQ +AR + +SE+ + EF F FD D G ++ E + +R LG + P E
Sbjct: 5 DQQAEAR--AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE----- 56
Query: 1217 PEFEAILDLVDPNRDGHVSLQEYMAFMIS--KETENVQSSEEIENAFHAIAASDRPYVTK 1274
E +AI++ VD + G + +E++ M+ KE +S EE+ N F + ++
Sbjct: 57 -ELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDI 115
Query: 1275 EELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
EEL + + ++ +E + +++ G +D+ EF + +
Sbjct: 116 EEL-GEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158
>pdb|1H8B|A Chain A, Ef-Hands 3,4 From Alpha-Actinin Z-Repeat 7 From Titin
Length = 75
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 1250 NVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGAL 1309
+ ++E++ +F I ASD+PY+ EEL L + A YC++RM Y P + +PGAL
Sbjct: 5 DTDTAEQVIASFR-ILASDKPYILAEELRRELPPDQAQYCIKRMPAYSGPGS---VPGAL 60
Query: 1310 DYIEFTRTLF 1319
DY F+ L+
Sbjct: 61 DYAAFSSALY 70
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 292 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 340
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + DG + E++ M++++ ++ S EEI AF
Sbjct: 341 ----QNPTEAELQDMINEVDADGDGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKD 395
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 396 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 445
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ DG + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 57 ADGDGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 116 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 145
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey Skeletal
Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Query: 1161 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1220
QA ++ +SE+ + EF F FD D G ++ E + +R LG + P E E +
Sbjct: 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE------ELD 59
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMIS--KETENVQSSEEIENAFHAIAASDRPYVTKEELY 1278
AI++ VD + G + +E++ M+ KE +S EE+E+ F + ++ EEL
Sbjct: 60 AIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELEDCFRIFDKNADGFIDIEEL- 118
Query: 1279 ANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ + ++ E + +++ G +D+ EF + +
Sbjct: 119 GEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
Length = 159
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 1157 EQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPD 1216
+QQ +AR + +SE+ + EF F FD D G ++ E + +R LG + P E
Sbjct: 2 DQQAEAR--AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE----- 53
Query: 1217 PEFEAILDLVDPNRDGHVSLQEYMAFMIS--KETENVQSSEEIENAFHAIAASDRPYVTK 1274
E +AI++ VD + G + +E++ M+ KE +S EE+ N F + ++
Sbjct: 54 -ELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDI 112
Query: 1275 EELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
EEL + + ++ E + +++ G +D+ EF + +
Sbjct: 113 EEL-GEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 155
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 341
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + DG + E++ M++++ + S EEI AF
Sbjct: 342 ----QNPTEAELQDMINEVDADGDGTIDFPEFLT-MMARKMKYTDSEEEIREAFRVFDKD 396
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 397 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 446
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 106/255 (41%), Gaps = 51/255 (20%)
Query: 725 TYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKH------------------ 766
T +L + E WI++KQ L D+GD++ +VQ + H
Sbjct: 759 TKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSEL 818
Query: 767 ----DAFETDFSVHRDRCADICSAG----------NKLIEAKNHHADSITQRCQQLQLKL 812
++ +T + + R + AG + L +A+ HA+++ +++LK
Sbjct: 819 EAIYNSLQTKLRLIK-REPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL-----RIELKR 872
Query: 813 DNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQ 872
+A+ ++ +++ +E+W K ++ S E G ++ VQ L
Sbjct: 873 QKKIAVLLQKYNRILKK------------LENWATTKSVYLGSNETGDSITAVQAKLKNL 920
Query: 873 ETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIA-RWQKLLGDSNARKQ 931
E FD + E + ++ ++ QL N++ P + +R A +W + + K
Sbjct: 921 EAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKN 980
Query: 932 RLLRMQEQFRQIEDL 946
LL E+ ++IEDL
Sbjct: 981 TLLAELERLQKIEDL 995
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 21/190 (11%)
Query: 633 WIKEKKLLVGSDDYGRDLTGVQNL-------KKKHKRLEAELASHQPAIQNVQETGEKLM 685
WI +K+ + S D+G + VQ+ KK K + + S AI N +T +L+
Sbjct: 773 WINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLI 832
Query: 686 DVSNLGVP------EIEQRLKLLNQA---WSELKQLAANRGQKLDESL-TYQHFLAKVEE 735
P EI+ L +A +E ++ R +K+ L Y L K+E
Sbjct: 833 KREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLEN 892
Query: 736 EEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDF-SVHRDRCADICSAGNKLIEAK 794
W + K L + GD++ AVQ LK +AF+ + S+ +D+ S +L E
Sbjct: 893 ---WATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELN 949
Query: 795 NHHADSITQR 804
+ +T+R
Sbjct: 950 YNGVPELTER 959
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 22/178 (12%)
Query: 72 LQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEG 131
L QL ERA++ + ++R +E WI +K +L + D G + SVQ+ H+
Sbjct: 747 LAQLEEERASEQTKSDYLKR----ANELVQWINDKQASLESRDFGDSIESVQSFMNAHKE 802
Query: 132 LER-DLAALGDKIRQLDETAN------RLMQTHPETAEQTYAKQKEINEEWTQL------ 178
++ + G ++ +L+ N RL++ P A EI+ W+ L
Sbjct: 803 YKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPN-EIDSTWSALEKAEQE 861
Query: 179 ---TAKANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLE 233
+ +++K + + LQ++ + L +W + + S+E + +T +A L+
Sbjct: 862 HAEALRIELKRQKKI-AVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLK 918
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 93/218 (42%), Gaps = 26/218 (11%)
Query: 517 YIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKH------------------QLVE 558
Y+ +L W+ + ++ L S D G + SVQ+ + H + +
Sbjct: 763 YLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIY 822
Query: 559 ADIQAHDDRIKDMNGQADSLIDSGQFDAS-SIQEKRQSINERYERIKNLAAHRQARLNEA 617
+Q IK A + + + D++ S EK + + RI+ RQ ++ A
Sbjct: 823 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIE---LKRQKKI--A 877
Query: 618 NTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQP-AIQN 676
L ++ R + E+W K + +GS++ G +T VQ K + + E S + + +
Sbjct: 878 VLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSD 937
Query: 677 VQETGEKLMDVSNLGVPEIEQRL-KLLNQAWSELKQLA 713
+ +L +++ GVPE+ +R Q W+ +K A
Sbjct: 938 LLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSA 975
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 74/156 (47%), Gaps = 19/156 (12%)
Query: 314 WMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKA--------INAHEEKIGALQTLADQL 365
W++ ++A L + + ++V++ + H+++ K ++ E +LQT +L
Sbjct: 773 WINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQT-KLRL 831
Query: 366 IAADHYAAKPIDDKRKQVLDRWRLLK-------EAL-IEKRSRLGESQTLQQFSRDADEM 417
I + + A P ++ W L+ EAL IE + + + LQ+++R ++
Sbjct: 832 IKREPFVA-PAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKL 890
Query: 418 ENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAE 452
ENW K + L + E+ +Q+K + +AF+ E
Sbjct: 891 ENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 926
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 1157 EQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPD 1216
+QQ +AR + +SE+ + EF F FD D G ++ E + +R LG + P E
Sbjct: 5 DQQAEAR--AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE----- 56
Query: 1217 PEFEAILDLVDPNRDGHVSLQEYMAFMIS--KETENVQSSEEIENAFHAIAASDRPYVTK 1274
E +AI++ VD + G + +E++ M+ KE +S EE+ N F + ++
Sbjct: 57 -ELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDI 115
Query: 1275 EELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
EEL + + ++ E + +++ G +D+ EF + +
Sbjct: 116 EEL-GEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 58 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V++M D + G ++Y EF + +
Sbjct: 117 LTDEEVDQMIREADIDGD----GQVNYEEFVQMM 146
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 341
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + +G + E++ M++++ ++ S EEI AF
Sbjct: 342 ----QNPTEAELQDMINEVDADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKD 396
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 397 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 446
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 58 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 117 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 146
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 341
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + +G + E++ M++++ ++ S EEI AF
Sbjct: 342 ----QNPTEAELQDMINEVDADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKD 396
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 397 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 446
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 294 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 342
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + +G + E++ M++++ ++ S EEI AF
Sbjct: 343 ----QNPTEAELQDMINEVDADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKD 397
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 398 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 447
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 256 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 304
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + +G + E++ M++++ ++ S EEI AF
Sbjct: 305 ----QNPTEAELQDMINEVDADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKD 359
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 360 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 409
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 259 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 307
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + +G + E++ M++++ ++ S EEI AF
Sbjct: 308 ----QNPTEAELQDMINEVDADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKD 362
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 363 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 412
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 6 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 58
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 59 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 117
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 118 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 147
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human Drp-1
Kinase
Length = 150
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 58 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 117 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 146
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 10 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 62
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 63 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 121
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 122 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 151
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 3'
Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 3'
Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 3'
Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin, 3',5'
Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin, 3',5'
Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin, 3',5'
Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A Ryanodine
Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1) Iq
Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1) Iq
Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3) Iq
Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2 C-Terminal
Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2 C-Terminal
Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2 C-Terminal
Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2 C-Terminal
Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin Interaction:
A Novel 1-26 Calmodulin Binding Motif With A Bipartite
Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First Endogenous
Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With The
Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam Binding
Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 57 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 116 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 145
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 2'
Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 2'
Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 2'
Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between Calmodulin
And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between Calmodulin
And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between Calmodulin
And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between Calmodulin
And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A Dap
Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated Sodium
Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A Trpv1
C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 58 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 117 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 146
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM COMPLEX
Length = 152
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 8 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 60
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 61 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 119
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 120 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 149
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 57 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 116 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 145
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 58 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 117 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 146
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin V
Length = 145
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 3 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 55
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 56 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 114
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 115 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 144
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 54
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 55 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 113
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 114 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 143
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 54
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 55 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 113
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 114 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 143
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 1156 LEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQP 1215
++QQ +AR + +SE+ + EF F FD D G ++ E + +R LG + P E
Sbjct: 4 MDQQAEAR--AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE---- 56
Query: 1216 DPEFEAILDLVDPNRDGHVSLQEYMAFMIS--KETENVQSSEEIENAFHAIAASDRPYVT 1273
E +AI++ VD + G + +E++ M+ KE +S EE+ + F + ++
Sbjct: 57 --ELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELADCFRIFDKNADGFID 114
Query: 1274 KEELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
EEL + + ++ E + +++ G +D+ EF + +
Sbjct: 115 IEEL-GEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 23/174 (13%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++N +R+Q ++E+ + EF F FDKD G + E + +R+LG
Sbjct: 259 LGHKLEYN------SRDQ--LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 307
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + +G + E++ M++++ ++ S EEI AF
Sbjct: 308 ----QNPTEAELQDMINEVDADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKD 362
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 363 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 412
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL +
Sbjct: 58 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEX 116
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 117 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 146
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL +
Sbjct: 57 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEX 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 116 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 145
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular Recognition
On The Basis Of X-Ray Structures
Length = 144
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 1 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 53
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 54 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 112
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 113 LTDEEVDEMIREADIDGD----GQVNYEEFVQMM 142
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++ED + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M +++ ++ S EE++ AF +++ EL NL ++
Sbjct: 58 ADGNGTIDFPEFLNLM-ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK 116
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 117 LTDEEVDEMIREADVDGD----GQINYDEFVKVM 146
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 15/153 (9%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 3 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVDA 55
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKEM 1285
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL +++
Sbjct: 56 DGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL 114
Query: 1286 ADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
D V+ M D + G ++Y EF + +
Sbjct: 115 TDEEVDEMIREADIDGD----GQVNYEEFVQMM 143
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 15/153 (9%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 1 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVDA 53
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKEM 1285
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL +++
Sbjct: 54 DGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL 112
Query: 1286 ADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
D V+ M D + G ++Y EF + +
Sbjct: 113 TDEEVDEMIREADIDGD----GQVNYEEFVQMM 141
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 341
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + +G + E++ M++++ + S EEI AF
Sbjct: 342 ----QNPTEAELQDMINEVDADGNGTIDFPEFLT-MMARKMKYTDSEEEIREAFRVFDKD 396
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 397 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 446
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 1161 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1220
QA +S +SE+ + EF F FD D G ++ E + +R LG P E E +
Sbjct: 4 QAEARSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQ-TPTKE------ELD 56
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMIS--KETENVQSSEEIENAFHAIAASDRPYVTKEELY 1278
AI++ VD + G + +E++ M+ KE +S EE+ F + Y+ EEL
Sbjct: 57 AIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEEL- 115
Query: 1279 ANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
A + + ++ + + ++ G +D+ EF + +
Sbjct: 116 AEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 155
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms Resolution
Length = 148
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF Y++ EL NL ++
Sbjct: 57 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 115
Query: 1285 MADYCVERM 1293
+ D V+ M
Sbjct: 116 LTDEEVDEM 124
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 341
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ VD + +G + E++ M+++ ++ S EEI AF
Sbjct: 342 ----QNPTEAELQDMINEVDADGNGTIDFPEFLT-MMARWMKDTDSEEEIREAFRVFDKD 396
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
Y++ EL NL +++ D V+ M D + G ++Y EF + +
Sbjct: 397 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD----GQVNYEEFVQMM 446
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 1161 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1220
QA +S +SE+ + EF F FD D G ++ E + +R LG P E E +
Sbjct: 4 QAEARSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQ-TPTKE------ELD 56
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMIS--KETENVQSSEEIENAFHAIAASDRPYVTKEELY 1278
AI++ VD + G + +E++ M+ KE +S EE+ F + Y+ EEL
Sbjct: 57 AIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAELFRIFDRNADGYIDAEEL- 115
Query: 1279 ANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
A + + ++ + + ++ G +D+ EF + +
Sbjct: 116 AEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 155
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+++D + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M +++ ++ S EE++ AF +++ EL NL ++
Sbjct: 58 ADGNGTIDFPEFLNLM-ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK 116
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 117 LTDEEVDEMIREADVDGD----GQINYEEFVKVM 146
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle Myosin
Light Chain Kinase From Combination Of Nmr And Aqueous
And Contrast-matched Saxs Data
Length = 148
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF +++ EL NL ++
Sbjct: 57 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF +
Sbjct: 116 LTDEEVDEMIREADIDGD----GQVNYEEFVTMM 145
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex By
Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex By
Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF +++ EL NL ++
Sbjct: 57 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF +
Sbjct: 116 LTDEEVDEMIREADIDGD----GQVNYEEFVTMM 145
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF +++ EL NL ++
Sbjct: 58 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 116
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF +
Sbjct: 117 LTDEEVDEMIREADIDGD----GQVNYEEFVTMM 146
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF +++ EL NL ++
Sbjct: 58 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 116
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF +
Sbjct: 117 LTDEEVDEMIREADIDGD----GQVNYEEFVTMM 146
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State (
Crystal Form 2)
Length = 149
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M++++ ++ S EEI AF +++ EL NL ++
Sbjct: 58 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 116
Query: 1285 MADYCVERM 1293
+ D V+ M
Sbjct: 117 LTDEEVDEM 125
>pdb|2IAK|A Chain A, Crystal Structure Of A Protease Resistant Fragment Of The
Plakin Domain Of Bullous Pemphigoid Antigen1 (Bpag1)
Length = 224
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 12/205 (5%)
Query: 521 VKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLID 580
V+DL W+ E++ L + G DL SV++ ++ H+ V I+ + +K+ I
Sbjct: 29 VQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAK------IS 82
Query: 581 SGQFDAS---SIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEK 637
Q A S +K + +Y ++ N + +++ L+ TLH F +E W+ EK
Sbjct: 83 EIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLD---TLHNFVTRATNELIWLNEK 139
Query: 638 KLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQ 697
+ + D+ + V K H L EL + +I+ VQE E+L+ ++ IE
Sbjct: 140 EESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEA 199
Query: 698 RLKLLNQAWSELKQLAANRGQKLDE 722
+ WS + QL Q + E
Sbjct: 200 YRAAMQTQWSWILQLCQCVEQHIQE 224
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 6/185 (3%)
Query: 203 RDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQS 262
+DL++W++ M + E +D+ E+ LE H+ I+ + + + Q+
Sbjct: 30 QDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAP 89
Query: 263 GHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAFL 322
+ DKL L L + LD L F W++ +E
Sbjct: 90 ---LKLSYTDKLHRLESQYAKLLNTSRNQERHLDT---LHNFVTRATNELIWLNEKEESE 143
Query: 323 NAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQ 382
A + + +V H + + + EE I A+Q +A+QL+ +H A I+ R
Sbjct: 144 VAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAA 203
Query: 383 VLDRW 387
+ +W
Sbjct: 204 MQTQW 208
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 622 QFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRL-----EAELASHQPAIQN 676
+F +D+ + W+ E ++ + ++G DL V++ + HK + E E + + I
Sbjct: 27 KFVQDLLN---WVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISE 83
Query: 677 VQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEE 736
+Q T + ++ +L L +++L + N+ + LD T +F+ + E
Sbjct: 84 IQMTAPLKLSYTD--------KLHRLESQYAKLLNTSRNQERHLD---TLHNFVTRATNE 132
Query: 737 EAWISEKQQLLSVEDYGDTMAAV 759
W++EK++ D+ + ++V
Sbjct: 133 LIWLNEKEESEVAYDWSERNSSV 155
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp) From
Human Epithelial Cells
Length = 148
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E ++ +D
Sbjct: 4 LTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLG-------QNPTEAELRDMMSEID 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK---E 1284
+ +G V E++ M++++ ++ + EEI AF +V+ EL +T+ +
Sbjct: 57 RDGNGTVDFPEFLG-MMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEK 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
++D V+ M D + G ++Y EF R L
Sbjct: 116 LSDEEVDEMIRAADTDGD----GQVNYEEFVRVL 145
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
F+ FDKD +G ++ E + + LG L D E + ++ D + DG V+ +E+
Sbjct: 89 FRVFDKDGNGFVSAAELRHVMTRLGEKLS-------DEEVDEMIRAADTDGDGQVNYEEF 141
Query: 1240 MAFMISK 1246
+ ++SK
Sbjct: 142 VRVLVSK 148
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 1161 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1220
Q + + G++E+ +E F FD D SG ++ E K +RALG++ P E E +
Sbjct: 15 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE-PKKE------EIK 67
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFH--------AIAASDRPYV 1272
++ +D + G + +E++ M +K E S EEI AF I D V
Sbjct: 68 KMISEIDKDGSGTIDFEEFLTMMTAKMGER-DSREEILKAFRLFDDDNSGTITIKDLRRV 126
Query: 1273 TKEELYANLTKE 1284
K EL NLT+E
Sbjct: 127 AK-ELGENLTEE 137
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++++ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTDEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M +++ ++ S EE++ AF +++ EL NL ++
Sbjct: 57 ADGNGTIDFPEFLNLM-ARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEK 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 116 LTDEEVDEMIREADVDGD----GQVNYEEFVQVM 145
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+SE+ + +F F FDKD G + E + +R+L ++ + E + ++ VD
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSL-------DQNPTEEELQDMISEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E+++ M +K+ ++ + EE++ AF Y++ EL NL ++
Sbjct: 57 ADGNGTIEFDEFLSLM-AKKVKDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEK 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D VE+M D + G ++Y EF + +
Sbjct: 116 LTDEEVEQMIKEADLDGD----GQVNYEEFVKMM 145
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 1 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVDA 53
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKEM 1285
+ +G + E++ M K + SEEI AF Y++ EL NL +++
Sbjct: 54 DGNGTIDFPEFLTMMARKMKDT--DSEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL 111
Query: 1286 ADYCVERM 1293
D V+ M
Sbjct: 112 TDEEVDEM 119
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++++ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 1 LTDEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 53
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M +++ ++ S EE++ AF +++ EL NL ++
Sbjct: 54 ADGNGTIDFPEFLNLM-ARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEK 112
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 113 LTDEEVDEMIREADVDGD----GQVNYEEFVQVM 142
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTE----FKSCLRALGYDLPMVEEGQPDPEFEAILD 1224
S+D KE + +F DK+ G+L++ E +K +R G D M++ + E + +LD
Sbjct: 354 SQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLD 413
Query: 1225 LVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
VD +++G++ E++ + ++T + S E +E AF + + ++ EL
Sbjct: 414 AVDFDKNGYIEYSEFVTVAMDRKT--LLSRERLERAFRMFDSDNSGKISSTEL 464
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTE----FKSCLRALGYDLPMVEEGQPDPEFEAILD 1224
S+D KE + +F DK+ G+L++ E +K +R G D M++ + E + +LD
Sbjct: 353 SQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLD 412
Query: 1225 LVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
VD +++G++ E++ + ++T + S E +E AF + + ++ EL
Sbjct: 413 AVDFDKNGYIEYSEFVTVAMDRKT--LLSRERLERAFRMFDSDNSGKISSTEL 463
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTE----FKSCLRALGYDLPMVEEGQPDPEFEAILD 1224
S+D KE + +F DK+ G+L++ E +K +R G D M++ + E + +LD
Sbjct: 330 SQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLD 389
Query: 1225 LVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
VD +++G++ E++ + ++T + S E +E AF + + ++ EL
Sbjct: 390 AVDFDKNGYIEYSEFVTVAMDRKT--LLSRERLERAFRMFDSDNSGKISSTEL 440
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E+++ M K E S EE+ AF ++ EL NL ++
Sbjct: 57 ADGNGTIDFPEFLSLMARKMKEQ-DSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEK 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF R +
Sbjct: 116 LTDDEVDEMIREADIDGD----GHINYEEFVRMM 145
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
+D+ +E FK FD+D +G ++ E + + LG L D E + ++ D +
Sbjct: 79 QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLT-------DDEVDEMIREADID 131
Query: 1230 RDGHVSLQEYMAFMISK 1246
DGH++ +E++ M+SK
Sbjct: 132 GDGHINYEEFVRMMVSK 148
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E+++ M K E S EE+ AF ++ EL NL ++
Sbjct: 57 ADGNGTIDFPEFLSLMARKMKEQ-DSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEK 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF R +
Sbjct: 116 LTDDEVDEMIREADIDGD----GHINYEEFVRMM 145
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
+D+ +E FK FD+D +G ++ E + + LG L D E + ++ D +
Sbjct: 79 QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLT-------DDEVDEMIREADID 131
Query: 1230 RDGHVSLQEYMAFMISK 1246
DGH++ +E++ M+SK
Sbjct: 132 GDGHINYEEFVRMMVSK 148
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Query: 1148 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
LG ++++N Q+ +E+ + EF F FDKD G + + + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGGITTKQLGTVMRSLG--- 341
Query: 1208 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 1267
+ + E + +++ V + +G + +++ M++++ ++ S EEI AF
Sbjct: 342 ----QNPTEAELQDMINEVGADGNGTIDFPQFLT-MMARKMKDTDSEEEIREAFRVFGKD 396
Query: 1268 DRPYVTKEEL---YANLTKEMADYCVERM 1293
Y++ +L NL +++ D V+ M
Sbjct: 397 GNGYISAAQLRHVMTNLGEKLTDEEVDEM 425
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The Central
Helix
Length = 146
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M K + S EEI AF +++ EL NL ++
Sbjct: 57 ADGNGTIDFPEFLTMMARKMKD---SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 113
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF +
Sbjct: 114 LTDEEVDEMIREADIDGD----GQVNYEEFVTMM 143
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++++ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTDEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ M +++ ++ S E+++ AF +++ EL NL ++
Sbjct: 57 ADGNGTIDFPEFLNLM-ARKMKDTDSEEKLKEAFRVFDKDGNGFISAAELRHVMTNLGEK 115
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ D V+ M D + G ++Y EF + +
Sbjct: 116 LTDEEVDEMIREADVDGD----GQVNYEEFVQVM 145
>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc
pdb|2LAP|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain With Rdc
Length = 167
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 16/163 (9%)
Query: 1162 ARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGY---DLPMVEEGQPDPE 1218
+R + + ++E F+ FDKDK G +N + +C+R +GY ++ ++E Q
Sbjct: 13 SRKDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ--- 69
Query: 1219 FEAILDLVDPNRDGHVSLQEYMAFMISK---ETENVQSSEEIENAFHAIAASDRPYVTKE 1275
++ N GHV +++ M K ET ++ +E+ +AF + ++
Sbjct: 70 -------INMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTS 122
Query: 1276 ELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
EL + K + R + + G +D+ EF R +
Sbjct: 123 ELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 165
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+ ED L+E FK FD+D +G +++ E + +R+LGY +P + E E I+ +D
Sbjct: 30 IPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGY-MP------NEVELEVIIQRLD 82
Query: 1228 PNRDGHVSLQEYMAFM 1243
+ DG V +E++ +
Sbjct: 83 MDGDGQVDFEEFVTLL 98
>pdb|1AVS|A Chain A, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1AVS|B Chain B, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1BLQ|A Chain A, Structure And Interaction Site Of The Regulatory Domain Of
Troponin-C When Complexed With The 96-148 Region Of
Troponin-I, Nmr, 29 Structures
pdb|1SKT|A Chain A, Solution Structure Of Apo N-Domain Of Troponin C, Nmr, 40
Structures
pdb|1TNP|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1TNQ|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1ZAC|A Chain A, N-Domain Of Troponin C From Chicken Skeletal Muscle, Nmr,
Minimized Average Structure
Length = 90
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 1161 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1220
QA ++ +SE+ + EF F FD D G ++ E + +R LG + P E E +
Sbjct: 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE------ELD 59
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMISKETEN 1250
AI++ VD + G + +E++ M+ + E+
Sbjct: 60 AIIEEVDEDGSGTIDFEEFLVMMVRQMKED 89
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + R+LG + + E + ++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVXRSLG-------QNPTEAELQDXINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ +++ ++ S EEI AF Y++ EL NL ++
Sbjct: 58 ADGNGTIDFPEFLT-XXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEK 116
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTR 1316
+ D V++ D + G ++Y EF +
Sbjct: 117 LTDEEVDQXIREADIDGD----GQVNYEEFVQ 144
>pdb|3IFK|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin N-Terminal
Domain Fragment, Residues 1-90
pdb|3IFK|B Chain B, Crystal Structure Of Calcium-Saturated Calmodulin N-Terminal
Domain Fragment, Residues 1-90
Length = 90
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFH 1262
+ +G + E++ M++++ ++ S EEI AF
Sbjct: 57 ADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFR 90
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + R+LG + + E + ++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVXRSLG-------QNPTEAELQDXINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G + E++ +++ ++ S EEI AF Y++ EL NL ++
Sbjct: 57 ADGNGTIDFPEFLT-XXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEK 115
Query: 1285 MADYCVE 1291
+ D V+
Sbjct: 116 LTDEEVD 122
>pdb|3PDY|A Chain A, Structure Of The Third And Fourth Spectrin Repeats Of The
Plakin Domain Of Plectin
pdb|3PDY|B Chain B, Structure Of The Third And Fourth Spectrin Repeats Of The
Plakin Domain Of Plectin
Length = 210
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 6/194 (3%)
Query: 521 VKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLID 580
++DL W+ E + + + G DL SV+ + H+ + I+ +I+ D
Sbjct: 14 LQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARS------D 67
Query: 581 SGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLL 640
GQ ++ R + + L +ARL +LH F E W+ EK+
Sbjct: 68 EGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKELMWLNEKEEE 127
Query: 641 VGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLK 700
D+ T + K+ + L EL + I+ +Q G++L+ + P +E
Sbjct: 128 EVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQA 187
Query: 701 LLNQAWSELKQLAA 714
L WS + QL
Sbjct: 188 ALQTQWSWMLQLCC 201
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 844 SWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHD 903
+W+ + + V E+G DL +V+ L G H H+ I+ ++ +
Sbjct: 19 AWVEENQHRVDGAEWGVDLPSVEAQL--------GSHRGLHQSIEEFRAKIERARSDEGQ 70
Query: 904 QTPAIVKRHGDVIAR----WQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNS 959
+PA + D + R + KLL S AR R +E L+ +F A+
Sbjct: 71 LSPATRGAYRDCLGRLDLQYAKLLNSSKAR----------LRSLESLH-SFVAAATKELM 119
Query: 960 WFENAEED 967
W EE+
Sbjct: 120 WLNEKEEE 127
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 18/212 (8%)
Query: 624 FRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEK 683
R + D +W++E + V ++G DL V+ H+ L + + I+ + +
Sbjct: 11 LRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQ 70
Query: 684 LMDVSNLGVPEIEQRL-----KLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEA 738
L + + RL KLLN + + L+ L ESL F+A +E
Sbjct: 71 LSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSL---------ESL--HSFVAAATKELM 119
Query: 739 WISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHA 798
W++EK++ D+ D + + + A + + + ++ +AG++L+ ++H A
Sbjct: 120 WLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLR-EDHPA 178
Query: 799 DSITQRCQ-QLQLKLDNLMALATKRKTKLMDN 829
+ Q LQ + ++ L + L +N
Sbjct: 179 RPTVESFQAALQTQWSWMLQLCCCIEAHLKEN 210
>pdb|3OX5|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 16/154 (10%)
Query: 1171 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGY---DLPMVEEGQPDPEFEAILDLVD 1227
+ ++E F+ FDKDK G +N + +C+R +GY ++ ++E Q ++
Sbjct: 8 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ----------IN 57
Query: 1228 PNRDGHVSLQEYMAFMISK---ETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 1284
N GHV +++ M K ET ++ +E+ +AF + ++ EL + K
Sbjct: 58 MNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKL 117
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ R + + G +D+ EF R +
Sbjct: 118 LGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor Whi-P180
Length = 484
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTE----FKSCLRALGYDLPMVEEGQPDPEFEAILD 1224
S+D KE + +F DK+ G+L++ E +K R G D ++ + E + +LD
Sbjct: 330 SQDETKELTAIFHKXDKNGDGQLDRAELIEGYKELXRXKGQDASXLDASAVEHEVDQVLD 389
Query: 1225 LVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
VD +++G++ E++ ++ + + + S E +E AF + + ++ EL
Sbjct: 390 AVDFDKNGYIEYSEFVT--VAXDRKTLLSRERLERAFRXFDSDNSGKISSTEL 440
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 13/116 (11%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALG------YDLPMVEEGQPDPEFEA 1221
S++ KE + +F+H DK+ G+L++ E L +DLP +E E +A
Sbjct: 57 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIE-----SEVDA 111
Query: 1222 ILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
IL D +R+G++ E++ ++ + +++ S +++E+AF ++ +EL
Sbjct: 112 ILGAADFDRNGYIDYSEFVT--VAMDRKSLLSKDKLESAFQKFDQDGNGKISVDEL 165
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + R+LG + P + E + ++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVXRSLGCN-PT------EAELQDXINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLTKE 1284
+ +G ++ E++ ++ ++ S EEI AF Y++ EL NL ++
Sbjct: 57 ADGNGTINFPEFLT-XXARCXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEK 115
Query: 1285 MAD 1287
+ D
Sbjct: 116 LTD 118
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 13/115 (11%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALG------YDLPMVEEGQPDPEFEAI 1222
S++ KE + +F+H DK+ G+L++ E L +DLP +E E +AI
Sbjct: 341 SQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIES-----EVDAI 395
Query: 1223 LDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
L D +R+G++ E++ ++ + +++ S +++E+AF ++ +EL
Sbjct: 396 LGAADFDRNGYIDYSEFVT--VAMDRKSLLSKDKLESAFQKFDQDGNGKISVDEL 448
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1226
G++E+ +E F FD D SG ++ E K +RALG++ P E E + ++ +
Sbjct: 1 GLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE-PKKE------EIKKMIADI 53
Query: 1227 DPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFH 1262
D + G + +E++ M +K E S EEI AF
Sbjct: 54 DKDGSGTIDFEEFLQMMTAKMGER-DSREEIMKAFR 88
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 1171 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNR 1230
D+ +E F+ FD D++GK++ K + LG E D E + ++D D +
Sbjct: 78 DSREEIMKAFRLFDDDETGKISFKNLKRVAKELG-------ENMTDEELQEMIDEADRDG 130
Query: 1231 DGHVSLQEYMAFMISKET 1248
DG V+ +E+ F I K+T
Sbjct: 131 DGEVNEEEF--FRIMKKT 146
>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor
Domain Of Centrin
Length = 96
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 1161 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1220
Q + + G++E+ +E F FD D SG ++ E K +RALG++ P E E +
Sbjct: 17 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE-PKKE------EIK 69
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMISK 1246
++ +D + G + +E++ M +K
Sbjct: 70 KMISEIDKDGSGTIDFEEFLTMMTAK 95
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 1166 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1225
S ++E+ + EF F FDKD +G ++ +E + +R+LG P + E +++
Sbjct: 3 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLS-P------SEAEVNDLMNE 55
Query: 1226 VDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLT 1282
+D + + + E++A M S++ ++ S +E+ AF + ++ EL LT
Sbjct: 56 IDVDGNHQIEFSEFLALM-SRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLT 111
>pdb|1SMG|A Chain A, Calcium-Bound E41a Mutant Of The N-Domain Of Chicken
Troponin C, Nmr, 40 Structures
Length = 90
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 1161 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1220
QA ++ +SE+ + EF F FD D G ++ + +R LG + P E E +
Sbjct: 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKALGTVMRMLGQN-PTKE------ELD 59
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMISKETEN 1250
AI++ VD + G + +E++ M+ + E+
Sbjct: 60 AIIEEVDEDGSGTIDFEEFLVMMVRQMKED 89
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 1166 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1225
S ++E+ + EF F FDKD +G ++ +E + +R+LG + E +++
Sbjct: 2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGL-------SPSEAEVNDLMNE 54
Query: 1226 VDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLT 1282
+D + + + E++A M S++ ++ S +E+ AF + ++ EL LT
Sbjct: 55 IDVDGNHQIEFSEFLALM-SRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLT 110
>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 1171 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGY---DLPMVEEGQPDPEFEAILDLVD 1227
+ ++E F+ FDKDK G +N + +C+R +GY ++ ++E Q ++
Sbjct: 8 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ----------IN 57
Query: 1228 PNRDGHVSLQEYMAFMISK---ETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 1284
N GHV +++ M K ET ++ +E+ +AF + ++ EL +
Sbjct: 58 MNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRAL 117
Query: 1285 MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ R + + G +D+ EF R +
Sbjct: 118 LGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 1166 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1225
S ++E+ + EF F FDK+ +GK+ E + +R LG + + E + ++
Sbjct: 2 SELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLG-------QNPTEAELQDLIAE 54
Query: 1226 VDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL---YANLT 1282
+ N +G ++ E+ M +K+ + EE+ AF +++ EL NL
Sbjct: 55 AENNNNGQLNFTEFCGIM-AKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLG 113
Query: 1283 KEMADYCVERMKPYVDPKTERGIPGALDYIEFT 1315
+++ D ++ M D + G ++Y EF
Sbjct: 114 EKVTDEEIDEMIREADFDGD----GMINYEEFV 142
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 1166 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1225
S ++E+ + EF F FDKD +G ++ +E + +R+LG + E +++
Sbjct: 2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGL-------SPSEAEVNDLMNE 54
Query: 1226 VDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLT 1282
+D + + + E++A M S++ ++ S +E+ AF + ++ EL LT
Sbjct: 55 IDVDGNHQIEFSEFLALM-SRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLT 110
>pdb|1NPQ|A Chain A, Structure Of A Rhodamine-Labeled N-Domain Troponin C Mutant
(Ca2+ Saturated) In Complex With Skeletal Troponin I 115-
131
Length = 90
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 1161 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1220
QA ++ +SE+ + EF F FD D G ++ E + +R LG + E +
Sbjct: 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG-------QNPTKCELD 59
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMISKETEN 1250
AI+ VD + G + +E++ M+ + E+
Sbjct: 60 AIICEVDEDGSGTIDFEEFLVMMVRQMKED 89
>pdb|1TRF|A Chain A, Solution Structure Of The Tr1c Fragment Of Skeletal Muscle
Troponin-C
Length = 76
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+SE+ + EF F FD D G ++ E + +R LG + P E E +AI++ VD
Sbjct: 3 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE------ELDAIIEEVD 55
Query: 1228 PNRDGHVSLQEYMAFMI 1244
+ G + +E++ M+
Sbjct: 56 EDGSGTIDFEEFLVMMV 72
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD SG ++ +E + +R+LG + E +++ +D
Sbjct: 5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGL-------SPSEAEVADLMNEID 57
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLT 1282
+ + + E++A M S++ + S +E+ AF + ++ EL LT
Sbjct: 58 VDGNHAIEFSEFLALM-SRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLT 111
>pdb|1SW8|A Chain A, Solution Structure Of The N-Terminal Domain Of Human N60d
Calmodulin Refined With Paramagnetism Based Strategy
Length = 79
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ DG + E++ M K
Sbjct: 57 ADGDGTIDFPEFLTMMARK 75
>pdb|3PE0|A Chain A, Structure Of The Central Region Of The Plakin Domain Of
Plectin
pdb|3PE0|B Chain B, Structure Of The Central Region Of The Plakin Domain Of
Plectin
Length = 283
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%)
Query: 619 TLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQ 678
+LH F E W+ EK+ D+ T + K+ + L EL + I+ +Q
Sbjct: 9 SLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQ 68
Query: 679 ETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEA 738
G++L+ + P +E L WS + QL L E+ Y F + V E E
Sbjct: 69 NAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEG 128
Query: 739 WISEKQQLLSVEDYGDTMAAVQGL 762
+ + Q+ L + D A V L
Sbjct: 129 QLQKLQEALRRKYSCDRSATVTRL 152
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 729 FLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGN 788
F+A +E W++EK++ D+ D + + + A + + + ++ +AG+
Sbjct: 13 FVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGD 72
Query: 789 KLIEAKNHHADSITQRCQQ-LQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVES 844
+L+ ++H A + Q LQ + ++ L + L +N+AY QF +DV E+
Sbjct: 73 RLLR-EDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFF--SDVREA 126
>pdb|2KXW|A Chain A, Structure Of The C-Domain Fragment Of Apo Calmodulin Bound
To The Iq Motif Of Nav1.2
Length = 73
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
+D+ +E FK FD+D +G ++ E + + LG L D E + ++ D +
Sbjct: 4 QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLT-------DDEVDEMIREADID 56
Query: 1230 RDGHVSLQEYMAFMISK 1246
DGH++ +E++ M+SK
Sbjct: 57 GDGHINYEEFVRMMVSK 73
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues Peptide
(P1-Xpc) From Xeroderma Pigmentosum Group C Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 1171 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNR 1230
D +E FK FD D++GK++ K + LG +L D E + ++D D +
Sbjct: 8 DTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENL-------TDEELQEMIDEADRDG 60
Query: 1231 DGHVSLQEYMAFM 1243
DG VS QE++ M
Sbjct: 61 DGEVSEQEFLRIM 73
>pdb|3UUL|A Chain A, Crystal Structure Of First N-Terminal Utrophin Spectrin
Repeat
pdb|3UUL|B Chain B, Crystal Structure Of First N-Terminal Utrophin Spectrin
Repeat
Length = 118
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 644 DDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVP---EIEQRLK 700
DD D+ V+ H+ EL++HQ ++ +V + G +LM L EI++++
Sbjct: 29 DDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMT 88
Query: 701 LLNQAWSELKQLAANRGQKLDESL 724
LLN W L+ + R +L ++L
Sbjct: 89 LLNARWEALRVESMERQSRLHDAL 112
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 308 CEQAENWM-SAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLI 366
E+ W+ SA + F +++ ++V+ HE F ++AH+ +G++ +QL+
Sbjct: 11 LEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLM 70
Query: 367 AADHYAAK---PIDDKRKQVLDRWRLLKEALIEKRSRL 401
+ + I ++ + RW L+ +E++SRL
Sbjct: 71 TQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRL 108
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 516 TYIAAVKDLDFWLGEVESLLTSEDS-GKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQ 574
+Y A++++ WL E +D D+ V+ H+ ++ AH + +
Sbjct: 6 SYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQA 65
Query: 575 ADSLIDSGQF---DASSIQEKRQSINERYERIKNLAAHRQARLNEA 617
+ L+ G + IQE+ +N R+E ++ + RQ+RL++A
Sbjct: 66 GNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDA 111
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 7 DVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQT--EAALKIQTQLQD 64
D+ +D+E V+ + F +L A++ + + + QLM+ G E +IQ Q+
Sbjct: 30 DISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTL 89
Query: 65 LNQKWTSLQQLTAERATQLGSA 86
LN +W +L+ + ER ++L A
Sbjct: 90 LNARWEALRVESMERQSRLHDA 111
>pdb|1F54|A Chain A, Solution Structure Of The Apo N-Terminal Domain Of Yeast
Calmodulin
pdb|1F55|A Chain A, Solution Structure Of The Calcium Bound N-Terminal Domain Of
Yeast Calmodulin
Length = 77
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 1166 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1225
S ++E+ + EF F FDKD +G ++ +E + +R+LG + E +++
Sbjct: 2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGL-------SPSEAEVNDLMNE 54
Query: 1226 VDPNRDGHVSLQEYMAFM 1243
+D + + + E++A M
Sbjct: 55 IDVDGNHQIEFSEFLALM 72
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
FK FD D++GK++ K + LG +L D E + ++D D + DG VS QE+
Sbjct: 85 FKLFDDDETGKISFKNLKRVAKELGENL-------TDEELQEMIDEADRDGDGEVSEQEF 137
Query: 1240 MAFM 1243
+ M
Sbjct: 138 LRIM 141
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
F FD D +G ++ E K +RALG++ P E E + ++ +D G ++ ++
Sbjct: 12 FDLFDADGTGTIDVKELKVAMRALGFE-PKKE------EIKKMISEIDKEGTGKMNFGDF 64
Query: 1240 MAFMISKETENVQSSEEIENAFH--------AIAASDRPYVTKEELYANLTKE 1284
+ M K +E + EEI AF I+ + V K EL NLT E
Sbjct: 65 LTVMTQKMSEK-DTKEEILKAFKLFDDDETGKISFKNLKRVAK-ELGENLTDE 115
>pdb|3B32|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin N-Terminal
Domain Fragment, Residues 1-75
Length = 75
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|1AK8|A Chain A, Nmr Solution Structure Of Cerium-Loaded Calmodulin Amino-
Terminal Domain (Ce2-Tr1c), 23 Structures
Length = 76
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLTMMARK 76
>pdb|2LLO|A Chain A, Solution Nmr-Derived Structure Of Calmodulin N-Lobe Bound
With Er Alpha Peptide
Length = 80
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|3UUM|A Chain A, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Utrophin
pdb|3UUM|B Chain B, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Utrophin
Length = 123
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 644 DDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVP---EIEQRLK 700
DD D+ V+ H+ EL++HQ ++ +V + G +LM L EI++++
Sbjct: 29 DDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMT 88
Query: 701 LLNQAWSELKQLAANRGQKLDESL 724
LLN W L+ + R +L ++L
Sbjct: 89 LLNARWEALRVESMERQSRLHDAL 112
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 308 CEQAENWM-SAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLI 366
E+ W+ SA + F +++ ++V+ HE F ++AH+ +G++ +QL+
Sbjct: 11 LEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLM 70
Query: 367 AADHYAAK---PIDDKRKQVLDRWRLLKEALIEKRSRL 401
+ + I ++ + RW L+ +E++SRL
Sbjct: 71 TQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRL 108
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 516 TYIAAVKDLDFWLGEVESLLTSEDS-GKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQ 574
+Y A++++ WL E +D D+ V+ H+ ++ AH + +
Sbjct: 6 SYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQA 65
Query: 575 ADSLIDSGQF---DASSIQEKRQSINERYERIKNLAAHRQARLNEA 617
+ L+ G + IQE+ +N R+E ++ + RQ+RL++A
Sbjct: 66 GNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDA 111
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 7 DVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQT--EAALKIQTQLQD 64
D+ +D+E V+ + F +L A++ + + + QLM+ G E +IQ Q+
Sbjct: 30 DISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTL 89
Query: 65 LNQKWTSLQQLTAERATQLGSA 86
LN +W +L+ + ER ++L A
Sbjct: 90 LNARWEALRVESMERQSRLHDA 111
>pdb|3UCT|A Chain A, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCT|B Chain B, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCW|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|B Chain B, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|C Chain C, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|D Chain D, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCY|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
Length = 79
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|1F70|A Chain A, Refined Solution Structure Of Calmodulin N-Terminal Domain
pdb|2PQ3|A Chain A, N-Terminal Calmodulin Zn-Trapped Intermediate
pdb|2KUG|A Chain A, Halothane Binds To Druggable Sites In Calcium-Calmodulin:
Solution Structure Of Halothane-Cam N-Terminal Domain
Length = 76
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|2LQC|A Chain A, Nmr Solution Structure Of A Ca2+-Calmodulin With A Binding
Motif (Nscate) Peptide From The N-Terminal Cytoplasmic
Domain Of The L-Type Voltage-Cated Calcium Channel
Alpha1c Subunit
Length = 77
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|1J7O|A Chain A, Solution Structure Of Calcium-calmodulin N-terminal Domain
Length = 76
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRAL-GYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
KE + +FK DK+ G+L++ E L + + E + E + IL VD +++G
Sbjct: 355 KELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNG 414
Query: 1233 HVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANL 1281
++ E+++ + K+ + S E + AF+ +TKEEL ANL
Sbjct: 415 YIEYSEFISVCMDKQI--LFSEERLRRAFNLFDTDKSGKITKEEL-ANL 460
>pdb|2JOJ|A Chain A, Nmr Solution Structure Of N-Terminal Domain Of Euplotes
Octocarinatus Centrin
Length = 77
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+SE+ +E F FD +K+G ++ E K +RALG+D+ PE +++ D
Sbjct: 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDV-------KKPEILELMNEYD 53
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+G++ +++ M K
Sbjct: 54 REGNGYIGFDDFLDIMTEK 72
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165) Of
The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
FK FD D++GK++ K + LG +L D E + ++D D + DG VS QE+
Sbjct: 27 FKLFDDDETGKISFKNLKRVAKELGENL-------TDEELQEMIDEADRDGDGEVSEQEF 79
Query: 1240 MAFM 1243
+ M
Sbjct: 80 LRIM 83
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean Calcium-Dependent
Protein Kinase-Alpha (Cdpk) In The Presence Of Ca2+ And
The Junction Domain (Jd)
Length = 188
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+SE+ + +FK D D SG + E K L+ +G +L + E + ++D D
Sbjct: 4 LSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSEL-------MESEIKDLMDAAD 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL-YANLTKEMA 1286
++ G + E++A + ++ E + +AF Y+T +E+ A +
Sbjct: 57 IDKSGTIDYGEFIAATV--HLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLD 114
Query: 1287 DYCVERMKPYVDPKTERGIPGALDYIEF 1314
D ++ M +D + G +DY EF
Sbjct: 115 DIHIDDMIKEIDQDND----GQIDYGEF 138
>pdb|2K7B|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 N-Domain
Length = 76
Score = 37.4 bits (85), Expect = 0.059, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 1171 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGY---DLPMVEEGQPDPEFEAILDLVD 1227
+ ++E F+ FDKDK G +N + +C+R +GY ++ ++E Q ++
Sbjct: 7 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ----------IN 56
Query: 1228 PNRDGHVSLQEYMAFM 1243
N GHV +++ M
Sbjct: 57 MNLGGHVDFDDFVELM 72
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 1172 ALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRD 1231
L++ + F+ FD+D G + E + + LG LP E +A++ D ++D
Sbjct: 4 GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQ-------EELDAMIREADVDQD 56
Query: 1232 GHVSLQEYMAFMISKE 1247
G V+ +E+ A M+++E
Sbjct: 57 GRVNYEEF-ARMLAQE 71
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
Length = 134
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 1178 MMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV---DPNRDGHV 1234
+++K D D GKL + E + + GY E ++D + D N DG++
Sbjct: 79 ILYKLMDADGDGKLTKEEVTTFFKKFGY--------------EKVVDQIMKADANGDGYI 124
Query: 1235 SLQEYMAF 1242
+L+E++AF
Sbjct: 125 TLEEFLAF 132
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 17/144 (11%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
F H D++ G + + + + L G LP P F+ +LD +D + G++ E+
Sbjct: 61 FLHLDEEGKGNITKLQLRKGLERSGLMLP--------PNFDLLLDQIDSDGSGNIDYTEF 112
Query: 1240 MAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELY-----ANLTKEMADYCVERMK 1294
+A I + S + I AF + +T EL N + + V ++K
Sbjct: 113 LAAAIDRRQ---LSKKLIYCAFRVFDVDNDGEITTAELAHVLFNGNKRGNITERDVNQVK 169
Query: 1295 PYVDPKTERGIPGALDYIEFTRTL 1318
+ + G G +D+ EF+ +
Sbjct: 170 KMIREVDKNG-DGKIDFYEFSEMM 192
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 1174 KEFSMM-FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
KE ++ FK FD D +GK++ E K R G D +E D +++L VD N DG
Sbjct: 128 KEVCLIPFKFFDIDGNGKISVEELK---RIFGRD--DIENPLIDKAIDSLLQEVDLNGDG 182
Query: 1233 HVSLQEYMAFMISKE 1247
+ E+M M K+
Sbjct: 183 EIDFHEFMLMMSKKK 197
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 1179 MFKHFDKDKSGKLNQTEFKSCLRALGY-DLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1237
+F D D SG L+ E L+ +GY +P P+ +L +D N G +
Sbjct: 62 IFIALDVDNSGTLSSQEILDGLKKIGYQKIP--------PDIHQVLRDIDSNASGQIHYT 113
Query: 1238 EYMAFMISKET 1248
+++A I K+T
Sbjct: 114 DFLAATIDKQT 124
>pdb|2I08|A Chain A, Solvation Effect In Conformational Changes Of Ef-Hand
Proteins: X-Ray Structure Of Ca2+-Saturated Double Mutant
Q41l-K75i Of N-Domain Of Calmodulin
Length = 78
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + EF F +DKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLYDKDGDGTITTKELGTVMRSLGLN-------PTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFM 1243
+ +G + E++ M
Sbjct: 57 ADGNGTIDFPEFLTMM 72
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
F +D +K G +N+ E ++A+ Y P++ E P + +D N+DG V
Sbjct: 95 FNLYDINKDGYINKEEMMDIVKAIYDMMGAYTYPVLAEDTPRQHVDVFFQKMDKNKDGIV 154
Query: 1235 SLQEYM 1240
+L E++
Sbjct: 155 TLDEFL 160
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
F +D +K G +N+ E ++A+ Y P+++E P + +D N+DG V
Sbjct: 98 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 157
Query: 1235 SLQEYM 1240
+L E++
Sbjct: 158 TLDEFL 163
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 1153 QHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEE 1212
+ N + Q +D +E FK FD D++GK++ K + LG +L
Sbjct: 83 KXNFGDFLTVXTQKXSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENL----- 137
Query: 1213 GQPDPEFEAILDLVDPNRDGHVSLQEYM 1240
D E + +D D + DG VS QE++
Sbjct: 138 --TDEELQEXIDEADRDGDGEVSEQEFL 163
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
FK FDKD SGK++ E + M E E+I++ VD N+DG V E+
Sbjct: 423 FKMFDKDGSGKISTKELFKLFSQADSSIQM-------EELESIIEQVDNNKDGEVDFNEF 475
Query: 1240 MAFM 1243
+ +
Sbjct: 476 VEML 479
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex With
Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex With
Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
F +D +K G +N+ E ++A+ Y P+++E P + +D N+DG V
Sbjct: 95 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 154
Query: 1235 SLQEYM 1240
+L E++
Sbjct: 155 TLDEFL 160
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
F +D +K G +N+ E ++A+ Y P+++E P + +D N+DG V
Sbjct: 131 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 190
Query: 1235 SLQEYM 1240
+L E++
Sbjct: 191 TLDEFL 196
>pdb|2RO8|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 N-Terminal Domain
Length = 79
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++++ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTDEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLNLMARK 75
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 1179 MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1238
+FK FD + GK++ E L+ LG P E + ++ +D + DG +S QE
Sbjct: 14 IFKRFDANGDGKISAAELGEALKTLGSITP--------DEVKHMMAEIDTDGDGFISFQE 65
Query: 1239 YMAF 1242
+ F
Sbjct: 66 FTDF 69
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 5 EELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 57
Query: 1234 VSLQEYMAFM 1243
+ E++ FM
Sbjct: 58 IDYDEFLEFM 67
>pdb|2HQ8|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
pdb|2HQ8|B Chain B, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
Length = 186
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 1178 MMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1237
+M+ D DK G ++ EFK+ L+A+G DL D + + +D N++G +S
Sbjct: 106 IMYDCIDTDKDGYVSLPEFKAFLQAVGPDL-------TDDKAITCFNTLDFNKNGQISRD 158
Query: 1238 EYMA 1241
E++
Sbjct: 159 EFLV 162
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 1175 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG +
Sbjct: 11 ELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGRI 63
Query: 1235 SLQEYMAFM 1243
E++ FM
Sbjct: 64 DYDEFLEFM 72
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The Cardiac
Regulatory Protein Troponin C
Length = 72
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 6 EELSDLFRMFDKNADGYIDLDELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 58
Query: 1234 VSLQEYMAFM 1243
+ E++ FM
Sbjct: 59 IDYDEFLEFM 68
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin C
Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin C
Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 1175 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG +
Sbjct: 16 ELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGRI 68
Query: 1235 SLQEYMAFM 1243
E++ FM
Sbjct: 69 DYDEFLEFM 77
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 1175 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG +
Sbjct: 8 ELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGRI 60
Query: 1235 SLQEYMAFM 1243
E++ FM
Sbjct: 61 DYDEFLEFM 69
>pdb|3UUN|A Chain A, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Dystrophin
pdb|3UUN|B Chain B, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Dystrophin
Length = 119
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 510 EANKQRTYIAAVKDLDFWLGEVESLLTSE-DSGKDLASVQNLIKKHQLVEADIQAHDDRI 568
E N R Y A++++ WL E L ++ + D+ V++ H+ D+ AH R+
Sbjct: 1 EVNLDR-YQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRV 59
Query: 569 KDMNGQADSLIDSGQF---DASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFR 625
++ LI +G+ + + +QE+ +N R+E + R A + + + LH+
Sbjct: 60 GNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECL------RVASMEKQSNLHRVLM 113
Query: 626 DIADE 630
D+ ++
Sbjct: 114 DLQNQ 118
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 309 EQAENWMSAREAFLNAE-EVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIA 367
E+ +W+ + E L A+ E+ + + V+ HE + + AH+ ++G + L +LI
Sbjct: 12 EEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71
Query: 368 ADHYA---AKPIDDKRKQVLDRWRLLKEALIEKRSRL 401
+ + ++ + RW L+ A +EK+S L
Sbjct: 72 TGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNL 108
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1234 VSLQEYMAFM 1243
+ E++ FM
Sbjct: 148 IDYDEFLEFM 157
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer Bepridil
At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1234 VSLQEYMAFM 1243
+ E++ FM
Sbjct: 148 IDYDEFLEFM 157
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1234 VSLQEYMAFM 1243
+ E++ FM
Sbjct: 148 IDYDEFLEFM 157
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMFDKNADGYIDLDELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1234 VSLQEYMAFM 1243
+ E++ FM
Sbjct: 148 IDYDEWLEFM 157
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL-- 1225
+SE+ + F D DKSG++ E K+ L+ +G +L E ILDL
Sbjct: 21 LSEEEIAGLKEXFNXIDADKSGQITFEELKAGLKRVGANLKESE----------ILDLXQ 70
Query: 1226 -VDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK- 1283
D + G + +E++A + ++ + + AF Y+T +EL +
Sbjct: 71 AADVDNSGTIDYKEFIAATL--HLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEF 128
Query: 1284 EMADYCVERMKPYVDPKTERGIPGALDYIEFT 1315
+ D +E + VD + G +DY EF
Sbjct: 129 GVEDVRIEELXRDVDQDND----GRIDYNEFV 156
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+SE+ + +F F FDKD G + E + +R+L ++ + E + ++ VD
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSL-------DQNPTEEELQDMISEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ +G + E+++ M K
Sbjct: 57 ADGNGTIEFDEFLSLMAKK 75
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLP 1208
++ + +F+ FD DKSG ++ E + + A G+ LP
Sbjct: 606 IRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLP 641
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean Calmod
Isoform 4 N-Domain
Length = 76
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+SE+ + +F F FDKD G + E + +R+L ++ + E + ++ VD
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSL-------DQNPTEEELQDMISEVD 56
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ +G + E+++ M K
Sbjct: 57 ADGNGTIEFDEFLSLMAKK 75
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 1162 ARNQSGVSEDAL-----------KEFSMMFKHFDKD-KSGKLNQTEFKSCLRALGYDLPM 1209
++QS +S+D L KE +K F KD SG LN++EF+ + P
Sbjct: 2 GKSQSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQF---FPF 58
Query: 1210 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYM 1240
G P E + ++ D +++G++ +E++
Sbjct: 59 ---GDPSAFAEYVFNVFDADKNGYIDFKEFI 86
>pdb|1SL8|A Chain A, Calcium-Loaded Apo-Aequorin From Aequorea Victoria
Length = 191
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 1220 EAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
+A+ D++D +++G +SL E+ A+ +K +QSSE+ E F
Sbjct: 112 DALFDIIDKDQNGAISLDEWKAY--TKSAGIIQSSEDCEETF 151
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDL------PMVEEGQPDPEFEAILDLVDPNRDGH 1233
F +D +K G + + E ++A+ YD+ P+++E P E +D N+DG
Sbjct: 144 FNLYDINKDGYITKEEMLDIMKAI-YDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGV 202
Query: 1234 VSLQEYM 1240
V++ E++
Sbjct: 203 VTIDEFI 209
>pdb|2HPS|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri
Length = 186
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 1178 MMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1237
+ + D DK G ++ EFK+ L+A+G DL D + + +D N++G +S
Sbjct: 106 IXYDCIDTDKDGYVSLPEFKAFLQAVGPDL-------TDDKAITCFNTLDFNKNGQISRD 158
Query: 1238 EYMA 1241
E++
Sbjct: 159 EFLV 162
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMFDKNADGYIDLDELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1234 VSLQEYMAFM 1243
+ E + FM
Sbjct: 148 IDYDEXLEFM 157
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 1179 MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1238
+FK FD + GK++ +E LR LG E + ++ +D + DG + E
Sbjct: 7 IFKRFDTNGDGKISLSELTDALRTLG--------STSADEVQRMMAEIDTDGDGFIDFNE 58
Query: 1239 YMAF 1242
+++F
Sbjct: 59 FISF 62
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen Phl
P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen Phl
P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 1179 MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1238
+FK FD + GK++ +E LR LG E + ++ +D + DG + E
Sbjct: 8 IFKRFDTNGDGKISLSELTDALRTLG--------STSADEVQRMMAEIDTDGDGFIDFNE 59
Query: 1239 YMAF 1242
+++F
Sbjct: 60 FISF 63
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
F FD + G L+ E K ++ALG++LP E ILDL+D L +Y
Sbjct: 29 FSLFDMNNDGFLDYHELKVAMKALGFELPKRE----------ILDLIDEYDSEGRHLMKY 78
Query: 1240 MAFMI 1244
F I
Sbjct: 79 DDFYI 83
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 1171 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNR 1230
D L E F+ FD D +GK++ + + LG E D E A+++ D +
Sbjct: 93 DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELG-------ETLTDEELRAMIEEFDLDG 145
Query: 1231 DGHVSLQEYMA 1241
DG ++ E++A
Sbjct: 146 DGEINENEFIA 156
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEF-EAILDLVDPNRDGHVSLQE 1238
FK +D D +G +++ E + ++A+ + E EF + D +D N DG +SL+E
Sbjct: 94 FKLYDVDGNGCIDRGELLNIIKAI-RAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEE 152
Query: 1239 YM 1240
+M
Sbjct: 153 FM 154
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+E S +F+ +DK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMWDKNADGYIDLDELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1234 VSLQEYMAFM 1243
+ E++ FM
Sbjct: 148 IDYDEFLEFM 157
>pdb|1S6J|A Chain A, N-Terminal Region Of The Ca2+-Saturated Calcium Regulatory
Domain (Cld) From Soybean Calcium-Dependent Protein
Kinase- Alpha (Cdpk)
Length = 87
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+SE+ + +FK D D SG + E K L+ +G +L + E + ++D D
Sbjct: 17 LSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSEL-------MESEIKDLMDAAD 69
Query: 1228 PNRDGHVSLQEYMA 1241
++ G + E++A
Sbjct: 70 IDKSGTIDYGEFIA 83
>pdb|2BL0|C Chain C, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 142
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+D + EF F+ FD +++G + + ++ L+ G + +P F + + D
Sbjct: 1 GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRV------EP-AAFNEMFNEADA 53
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADY 1288
+G + E+++ M+ + + S + + AF Y+ K L L
Sbjct: 54 TGNGKIQFPEFLS-MMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLN----- 107
Query: 1289 CVERMKPY 1296
+R+KP+
Sbjct: 108 LGDRLKPH 115
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCL-------RALGYDLPMVEEGQ---PDPEFEAILDLVDPN 1229
FK +DKD++G +++ E + +A ++ ++G+ P+ + I LVD N
Sbjct: 101 FKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDEN 160
Query: 1230 RDGHVSLQEYM 1240
DG +SL E++
Sbjct: 161 GDGQLSLNEFV 171
>pdb|2GV5|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|D Chain D, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|E Chain E, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|C Chain C, Crystal Structure Of Sfi1pCDC31P COMPLEX
Length = 161
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
F FD + G L+ E K +ALG++LP E ILDL+D L +Y
Sbjct: 29 FSLFDXNNDGFLDYHELKVAXKALGFELPKRE----------ILDLIDEYDSEGRHLXKY 78
Query: 1240 MAFMI 1244
F I
Sbjct: 79 DDFYI 83
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 1171 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNR 1230
D L E F+ FD D +GK++ + + LG E D E A ++ D +
Sbjct: 93 DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELG-------ETLTDEELRAXIEEFDLDG 145
Query: 1231 DGHVSLQEYMA 1241
DG ++ E++A
Sbjct: 146 DGEINENEFIA 156
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen Che
A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen Che
A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen Che
A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen Che
A 3
Length = 86
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 1179 MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1238
+FK FD + GK++ +E L+ LG P E ++ +D + DG +S E
Sbjct: 16 IFKRFDTNGDGKISSSELGDALKTLGSVTP--------DEVRRMMAEIDTDGDGFISFDE 67
Query: 1239 YMAF 1242
+ F
Sbjct: 68 FTDF 71
>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of
Human Centrin 2
Length = 98
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
F FD D +G ++ E K +RALG++ P E E + ++ +D G ++ ++
Sbjct: 37 FDLFDADGTGTIDVKELKVAMRALGFE-PKKE------EIKKMISEIDKEGTGKMNFGDF 89
Query: 1240 MAFMISK 1246
+ M K
Sbjct: 90 LTVMTQK 96
>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
Length = 204
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 20/125 (16%)
Query: 1156 LEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQP 1215
L Q +R SG+ + + F+ D+D S L+ EF+ L LG L E
Sbjct: 24 LRAQCLSRGASGI-----QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEA--- 75
Query: 1216 DPEFEAILDLVDPNRDGHVSLQEYMAFM---ISKETENVQSSEEIENAFHAIAASDRPYV 1272
E + D N G + L+E++ + +S+ E V I AF + S V
Sbjct: 76 ----EGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAV-----IAAAFAKLDRSGDGVV 126
Query: 1273 TKEEL 1277
T ++L
Sbjct: 127 TVDDL 131
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+E S +F+ DK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMXDKNADGYIDLDELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1234 VSLQEYMAFM 1243
+ E++ FM
Sbjct: 148 IDYDEFLEFM 157
>pdb|3PAT|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|2PAS|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|1PVA|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
pdb|1PVA|B Chain B, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
Length = 110
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 1179 MFKHFDKDKSGKLNQTEFKSCLRAL---GYDLPMVEEGQPDPEFEAILDLVDPNRDGHVS 1235
+FK D D SG + + E K L++ G DL D E +A L D + DG +
Sbjct: 47 VFKAIDADASGFIEEEELKFVLKSFAADGRDL-------TDAETKAFLKAADKDGDGKIG 99
Query: 1236 LQEY 1239
+ E+
Sbjct: 100 IDEF 103
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta At
2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta At
2.4 Angstroms
Length = 193
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMV-----EEGQPDPEFEAILDLVDPNRDGHV 1234
F +D D +G +++ E ++A+ + V +E P+ E I +D NRDG +
Sbjct: 105 FSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKL 164
Query: 1235 SLQEYM 1240
SL+E++
Sbjct: 165 SLEEFI 170
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
F+ FD D SGK+ E LG + E D + +L D N DG V +E+
Sbjct: 129 FQQFDSDGSGKITNEE-------LGRLFGVTE--VDDETWHQVLQECDKNNDGEVDFEEF 179
Query: 1240 MAFM 1243
+ M
Sbjct: 180 VEMM 183
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRAL------GYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
FK +D D G + + E + A+ +LP EE P+ + I ++D N DG
Sbjct: 105 FKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPE-EENTPEKRVDRIFAMMDKNADGK 163
Query: 1234 VSLQEY 1239
++LQE+
Sbjct: 164 LTLQEF 169
>pdb|2LVV|A Chain A, Nmr Structure Of Tb24
Length = 226
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 22/181 (12%)
Query: 1095 AIKR-KAAEVRSRRSDLKKIEDLGAI--LEEHLILD--------NRYTEHSTVGLAQQWD 1143
AI R K AE +SRR +L K D L +LD + +T H + + +D
Sbjct: 40 AIPRDKDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFD 99
Query: 1144 QLDQLGMRM----QHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSC 1199
+ LG ++ + +L + ++ R D E ++MF DKD S L EFK
Sbjct: 100 KAKDLGNKVKGVGEEDLVEFLEFRLMLCYIYDIF-ELTVMFDTMDKDGSLLLELQEFKEA 158
Query: 1200 LRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIEN 1259
L L E G + + + +D N G V+ E+ + ++K+ + + EN
Sbjct: 159 LPKLK------EWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAVTKKLQVCGDPDGEEN 212
Query: 1260 A 1260
Sbjct: 213 G 213
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 25/140 (17%)
Query: 1152 MQHNLEQQIQARNQSGVSEDALKEF-------------SMMFKHFDKDKSGKLNQTEFKS 1198
M L ++I VS + +K F ++FK D D +G+++Q EF
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
Query: 1199 CLRAL-GYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEI 1257
++ G DL + G + + L+D + DG ++ +E +F E V +E++
Sbjct: 61 FYGSIQGQDLSDDKIG-----LKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKV--AEQV 113
Query: 1258 ENAFHAIAASDRPYVTKEEL 1277
A A+ Y+T EE
Sbjct: 114 MKA----DANGDGYITLEEF 129
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40 Of
Troponin I
Length = 76
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+E + F+ FDK+ G ++ E LRA G ++EE + E ++ D N DG
Sbjct: 10 EELANCFRIFDKNADGFIDIEELGEILRATGE--HVIEE-----DIEDLMKDSDKNNDGR 62
Query: 1234 VSLQEYMAFM 1243
+ E++ M
Sbjct: 63 IDFDEFLKMM 72
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B,
Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 30.4 bits (67), Expect = 7.7, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 1155 NLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQ 1214
+ ++ I+ +Q V D ++ F+ +D DK G ++ E L+ MV
Sbjct: 70 DFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM------MVGNNL 123
Query: 1215 PDPEFEAILDLV----DPNRDGHVSLQEYMA 1241
D + + I+D D + DG +S +E+ A
Sbjct: 124 KDTQLQQIVDKTIINADKDGDGRISFEEFCA 154
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 1155 NLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQ 1214
+ ++ I+ +Q V D ++ F+ +D DK G ++ E L+ MV
Sbjct: 71 DFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM------MVGNNL 124
Query: 1215 PDPEFEAILDLV----DPNRDGHVSLQEYMA 1241
D + + I+D D + DG +S +E+ A
Sbjct: 125 KDTQLQQIVDKTIINADKDGDGRISFEEFCA 155
>pdb|2HF5|A Chain A, The Structure And Function Of A Novel Two-Site Calcium-
Binding Fragment Of Calmodulin
Length = 68
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1218 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
E + +++ VD + +G + E++ M++++ ++ S EEI AF Y++ EL
Sbjct: 2 ELQDMINEVDADGNGTIDFPEFLT-MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAEL 60
>pdb|2K7C|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 C-Domain
pdb|2K7D|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain
Length = 72
Score = 30.0 bits (66), Expect = 8.0, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 1172 ALKEFSMMFKHFDKDKSGKLNQTEFKSCLRA-LGYDLPMVEEGQPDPEFEAILDLVDPNR 1230
+KE F+ FD + G+++ +E + +R LG+ + G D E I+ VD N
Sbjct: 5 GVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQV-----GHRD--IEEIIRDVDLNG 57
Query: 1231 DGHVSLQEYMAFM 1243
DG V +E++ M
Sbjct: 58 DGRVDFEEFVRMM 70
>pdb|2BL0|B Chain B, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 145
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALG 1204
F+ FDKD GK++ E S LR+LG
Sbjct: 11 FQIFDKDNDGKVSIEELGSALRSLG 35
>pdb|4ETO|A Chain A, Structure Of S100a4 In Complex With Non-Muscle Myosin-Iia
Peptide
pdb|4ETO|B Chain B, Structure Of S100a4 In Complex With Non-Muscle Myosin-Iia
Peptide
pdb|4HSZ|A Chain A, Structure Of Truncated (delta8c) S100a4
pdb|4HSZ|B Chain B, Structure Of Truncated (delta8c) S100a4
pdb|4HSZ|C Chain C, Structure Of Truncated (delta8c) S100a4
pdb|4HSZ|D Chain D, Structure Of Truncated (delta8c) S100a4
Length = 93
Score = 30.0 bits (66), Expect = 8.6, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 1190 KLNQTEFKSCLRALGYDLPMVEEGQPD-PEFEAILDLVDPNRDGHVSLQEYMAFM 1243
KLN++E K L +LP + D F+ ++ +D NRD V QEY F+
Sbjct: 28 KLNKSELKELLTR---ELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 79
>pdb|1M46|A Chain A, Crystal Structure Of Mlc1p Bound To Iq4 Of Myo2p, A Class V
Myosin
pdb|1M45|A Chain A, Crystal Structure Of Mlc1p Bound To Iq2 Of Myo2p, A Class V
Myosin
pdb|1N2D|A Chain A, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
pdb|1N2D|B Chain B, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
Length = 148
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 1145 LDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALG 1204
LDQ+ ++ N E+++ A ++ +ED +K F + FDK+ +GK++ + + L LG
Sbjct: 60 LDQITGLIEVN-EKELDATTKAK-TEDFVKAFQV----FDKESTGKVSVGDLRYMLTGLG 113
Query: 1205 YDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYM 1240
E D E + +L V+ + +G + ++++
Sbjct: 114 -------EKLTDAEVDELLKGVEVDSNGEIDYKKFI 142
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 1214 QPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
+PDP F+A++ + P+RD + + QE + I+K S IE
Sbjct: 107 RPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGL 154
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 30.0 bits (66), Expect = 9.1, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
+ ++ +F+ +D+D SG +++ E K L GY L
Sbjct: 92 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRL 126
>pdb|3C1V|A Chain A, The 1.5 A Crystal Structure Of Ca2+-Bound S100a4
pdb|3C1V|B Chain B, The 1.5 A Crystal Structure Of Ca2+-Bound S100a4
pdb|3C1V|C Chain C, The 1.5 A Crystal Structure Of Ca2+-Bound S100a4
pdb|3C1V|D Chain D, The 1.5 A Crystal Structure Of Ca2+-Bound S100a4
pdb|2LNK|A Chain A, Solution Structure Of Ca-Bound S100a4 In Complex With
Non-Muscle Myosin Iia
pdb|2LNK|B Chain B, Solution Structure Of Ca-Bound S100a4 In Complex With
Non-Muscle Myosin Iia
Length = 113
Score = 30.0 bits (66), Expect = 9.2, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 1190 KLNQTEFKSCLRALGYDLPMVEEGQPD-PEFEAILDLVDPNRDGHVSLQEYMAFM 1243
KLN++E K L +LP + D F+ ++ +D NRD V QEY F+
Sbjct: 40 KLNKSELKELLTR---ELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 91
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding Protein
From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 1178 MMFKHFDKDKSGKLNQTEFKSCLRAL-GYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSL 1236
++FK D D +G+++Q EF ++ G DL + G + + L+D + DG ++
Sbjct: 40 LIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIG-----LKVLYKLMDVDGDGKLTK 94
Query: 1237 QEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
+E +F E V +E++ A A+ Y+T EE
Sbjct: 95 EEVTSFFKKHGIEKV--AEQVMKA----DANGDGYITLEEF 129
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 30.0 bits (66), Expect = 9.7, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
+ ++ +F+ +D+D SG +++ E K L GY L
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRL 107
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 30.0 bits (66), Expect = 10.0, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 1155 NLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQ 1214
+ ++ I+ +Q V D ++ F+ +D DK G ++ E L+ MV
Sbjct: 57 DFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM------MVGNNL 110
Query: 1215 PDPEFEAILDLV----DPNRDGHVSLQEYMA 1241
D + + I+D D + DG +S +E+ A
Sbjct: 111 KDTQLQQIVDKTIINADKDGDGRISFEEFCA 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,239,798
Number of Sequences: 62578
Number of extensions: 1426574
Number of successful extensions: 4603
Number of sequences better than 100.0: 256
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 3968
Number of HSP's gapped (non-prelim): 526
length of query: 1321
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1211
effective length of database: 8,089,757
effective search space: 9796695727
effective search space used: 9796695727
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)