RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6493
(1321 letters)
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 372 bits (956), Expect = e-112
Identities = 166/656 (25%), Positives = 307/656 (46%), Gaps = 39/656 (5%)
Query: 692 VPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVED 751
V +A + ++ + + + + WI L
Sbjct: 218 VSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRA 277
Query: 752 YGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAK------NHHADSITQRC 805
+TM A+Q L+ + + + ++ K S +
Sbjct: 278 PENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMV 337
Query: 806 QQLQLKLDNLMALATKRKTKLMD--------NSAYLQFMWKADVVESWIADKETHVKSEE 857
+ L + L++ + +F KA + ESW KE ++ ++
Sbjct: 338 SDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKD 397
Query: 858 Y-GRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVI 916
Y LS ++ LL K E F++ L A + + ++ I + +L ++ +P++ R +
Sbjct: 398 YETATLSEIKALLKKHEAFESDLAAHQ-DRVEQIAAIAQELNELDYYDSPSVNARCQKIC 456
Query: 917 ARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNSWFENAEEDLTDPVRCNS 976
+W L + R++ L R ++ I+ LYL +AK+A+ FN+W E A EDL D ++
Sbjct: 457 DQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHT 516
Query: 977 IEEIRALREAHAQFQASLSSAQADFEALAALDQQIKSF-------NVGPNPYTWFTMEAL 1029
IEEI+ L AH QF+A+L A + +A+ + ++ G NPYT T + +
Sbjct: 517 IEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEI 576
Query: 1030 EDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETR----TSMMEG 1085
W ++++++ RD L +E RQ +N+ LRK+F AN W+ +E
Sbjct: 577 NGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEM 636
Query: 1086 TGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHLILDNRYTEHSTVGLAQQWDQL 1145
G+LE QL +++ + + + + ++E ++E LI DN++T ++ + W+QL
Sbjct: 637 HGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQL 696
Query: 1146 DQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGY 1205
R + +E QI R+ G+S++ + EF F HFD+ K+G ++ +F++CL ++GY
Sbjct: 697 LTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGY 756
Query: 1206 DLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIA 1265
++ + EF I+ +VDPNR G V+ Q ++ FM S+ET + +++++ +F +A
Sbjct: 757 NM-------GEAEFARIMSIVDPNRMGVVTFQAFIDFM-SRETADTDTADQVMASFKILA 808
Query: 1266 ASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQN 1321
D+ Y+T +EL L + A+YC+ RM PY +PGALDY+ F+ L+
Sbjct: 809 G-DKNYITVDELRRELPPDQAEYCIARMAPYNGR---DAVPGALDYMSFSTALYGE 860
Score = 139 bits (351), Expect = 1e-33
Identities = 78/507 (15%), Positives = 179/507 (35%), Gaps = 42/507 (8%)
Query: 269 EIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVD 328
+A + + + ++ + + W+ +L +
Sbjct: 220 SFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPE 279
Query: 329 SKTDNVEALIKKHEDFDKA-----INAHEEKIGALQTLADQLIAADHYAAKP-------- 375
+ ++ ++ D+ + + + TL +L ++ A P
Sbjct: 280 NTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSD 339
Query: 376 IDDKRKQVLDRWRLLKEALIEKRSRLGESQTL-QQFSRDADEMENWIAEKLQLATEESYK 434
I++ + + +E L+ + RL L ++F + A E+W K + ++ Y+
Sbjct: 340 INNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYE 399
Query: 435 --DPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIAD 492
+ I++ +KH+AFE++LAA+ DR++ + A+ Q L + +V AR I D
Sbjct: 400 TATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELD--YYDSPSVNARCQKICD 457
Query: 493 QWEFLTQKTTEKSLKLKEANK--------QRTYIAAVKDLDFWLGEVESLLTSEDSGKDL 544
QW+ L T ++ L+ K Y + W+ L +
Sbjct: 458 QWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTI 517
Query: 545 ASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKR-------QSIN 597
+Q L H+ +A + D + + G + + Q ++ Q IN
Sbjct: 518 EEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEIN 577
Query: 598 ERYERIKNLAAHRQARLNEA--------NTLHQFFRDIADEESWIKEKKLLVGSDDYGRD 649
++E ++ L R L E QF WI+ K +G
Sbjct: 578 GKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMH 637
Query: 650 LTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSEL 709
T +++ ++ E + +++P I ++ +++ + ++ + W +L
Sbjct: 638 GT-LEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQL 696
Query: 710 KQLAANRGQKLDESLTYQHFLAKVEEE 736
A +++ + + +E+
Sbjct: 697 LTTIARTINEVENQILTRDAKGISQEQ 723
Score = 127 bits (319), Expect = 7e-30
Identities = 75/620 (12%), Positives = 198/620 (31%), Gaps = 59/620 (9%)
Query: 58 IQTQLQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGK 117
+ T+ ++ A + ++ + + + +WI+ L N
Sbjct: 221 FYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPEN 280
Query: 118 DLRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQT------HPETAEQTYAKQKEI 171
++++Q R + + E +QT P +I
Sbjct: 281 TMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDI 340
Query: 172 NEEWTQLTAKANTRKEKLLDS--------YDLQRFLSDYRDLMSWINSMMGLVSSDE-LA 222
N W L +E LL+ + ++F SW + ++ +
Sbjct: 341 NNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYET 400
Query: 223 NDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEARE 282
++ +ALL++H+ +++ A + Q+L + +Y S + + + + +
Sbjct: 401 ATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWD 460
Query: 283 DLEKAWIARRMQLDQCLELQ--------LFYRDCEQAENWMSAREAFLNAEEVDSKTDNV 334
+L RR L++ +L + + NWM L + + +
Sbjct: 461 NLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEI 520
Query: 335 EALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQ-------VLDRW 387
+ L HE F + +++ A+ + +++ + + +W
Sbjct: 521 QGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKW 580
Query: 388 RLLKEALIEKRSRLGES--------QTLQQFSRDADEMENWIAEKLQLATEESYKDPANI 439
+++ + + L E + +QF A+ + WI K++ S + +
Sbjct: 581 EHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTL 640
Query: 440 QSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQ 499
+ + + +E + +I + Q + + + + + I WE L
Sbjct: 641 EDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQE--ALIFDNKHTNYTMEHIRVGWEQLLT 698
Query: 500 KTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEA 559
+++ R ++ + E + D K
Sbjct: 699 TIARTINEVENQILTRDAKGISQE---QMNEFRASFNHFDRKKTGM-------------- 741
Query: 560 DIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANT 619
+D + ++ ++ SI + + ++ + + A + A+
Sbjct: 742 --MDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQ 799
Query: 620 LHQFFRDIADEESWIKEKKL 639
+ F+ +A ++++I +L
Sbjct: 800 VMASFKILAGDKNYITVDEL 819
Score = 125 bits (313), Expect = 4e-29
Identities = 70/489 (14%), Positives = 158/489 (32%), Gaps = 46/489 (9%)
Query: 4 QVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEM-----NEIAMQLMSLGQTEAALKI 58
+ + ++ ++ + F D++ K +V+ N + +L +
Sbjct: 274 ENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSE 333
Query: 59 QTQLQDLNQKWTSLQQLTAERATQLGSAHE--------VQRFHRDVDETKDWIQEKDEAL 110
+ D+N W L+Q L + ++F + + W K+ L
Sbjct: 334 GKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAML 393
Query: 111 -NNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQK 169
+ L ++AL +KHE E DLAA D++ Q+ A L + + A+ +
Sbjct: 394 QQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQ 453
Query: 170 EINEEWTQLTAKANTRKEKLLDSYDLQR--------FLSDYRDLMSWINSMMGLVSSDEL 221
+I ++W L A R+E L + L + +W+ M + +
Sbjct: 454 KICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFI 513
Query: 222 ANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAR 281
+ + + L H++ + + QA ++ + V +
Sbjct: 514 VHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITP 573
Query: 282 EDLEKAW---------------IARRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAEE 326
+++ W Q + F W+ + +
Sbjct: 574 QEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRIS 633
Query: 327 VDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDR 386
++ +E + ++K+I ++ KI L+ Q+ A + K + + +
Sbjct: 634 IEMHGT-LEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVG 692
Query: 387 WRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKH 446
W L + + + Q +RDA + + S+ ++
Sbjct: 693 WEQLLTTIARTINEVEN----QILTRDAKGISQEQMNEF----RASFNHFDRKKTGMMDC 744
Query: 447 QAFEAELAA 455
+ F A L +
Sbjct: 745 EDFRACLIS 753
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 247 bits (633), Expect = 7e-74
Identities = 204/321 (63%), Positives = 260/321 (80%)
Query: 511 ANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKD 570
ANKQ+ + +KD DFWL EVE+LL SED GKDLASV NL+KKHQL+EADI AH+DR+KD
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 571 MNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADE 630
+N QADSL+ S FD S +++KR++IN R++RIK++AA R+A+LNE++ LHQFFRD+ DE
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 631 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL 690
ESWIKEKKLLV S+DYGRDLTGVQNL+KKHKRLEAELA+H+PAIQ V +TG+KL D + +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 691 GVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVE 750
G EI+QRL W ELKQLAA RGQ+L+ESL YQ F+A VEEEEAWI+EK L++ E
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 241
Query: 751 DYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQL 810
DYGDT+AA+QGLLKKH+AFETDF+VH+DR D+C+ G LI+ NHH ++IT + + L+
Sbjct: 242 DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKG 301
Query: 811 KLDNLMALATKRKTKLMDNSA 831
K+ +L A +RK KL +NSA
Sbjct: 302 KVSDLEKAAAQRKAKLDENSA 322
Score = 202 bits (516), Expect = 4e-58
Identities = 87/319 (27%), Positives = 166/319 (52%)
Query: 86 AHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQ 145
A++ Q F+ + + W+ E + L + D GKDL SV L +KH+ LE D++A D+++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 146 LDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDL 205
L+ A+ LM + Q K++ IN + ++ + A R+ KL +S+ L +F D D
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 206 MSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHY 265
SWI LVSS++ D+TG + L ++H+ E+ A Q G++L
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 266 ASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAE 325
EIQ +L + ++L++ AR +L++ LE Q F + E+ E W++ + + +E
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 241
Query: 326 EVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLD 385
+ ++ L+KKHE F+ H++++ + + LI +++ + I K K +
Sbjct: 242 DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKG 301
Query: 386 RWRLLKEALIEKRSRLGES 404
+ L++A +++++L E+
Sbjct: 302 KVSDLEKAAAQRKAKLDEN 320
Score = 196 bits (499), Expect = 7e-56
Identities = 96/317 (30%), Positives = 159/317 (50%), Gaps = 1/317 (0%)
Query: 617 ANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQN 676
AN F I D + W+ E + L+ S+DYG+DL V NL KKH+ LEA++++H+ +++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 677 VQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEE 736
+ + LM S +++ + + +N + +K +AA R KL+ES F +++E
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 737 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNH 796
E+WI EK+ L+S EDYG + VQ L KKH E + + H + G KL +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 797 HADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSE 856
+ I QR Q L LA R +L ++ Y QF+ + E+WI +K T V SE
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 241
Query: 857 EYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVI 916
+YG L+ +Q LL K E F+ + + + ++ + L+ N+ I + +
Sbjct: 242 DYGDTLAAIQGLLKKHEAFETDFTVHK-DRVNDVCANGEDLIKKNNHHVENITAKMKGLK 300
Query: 917 ARWQKLLGDSNARKQRL 933
+ L + RK +L
Sbjct: 301 GKVSDLEKAAAQRKAKL 317
Score = 192 bits (488), Expect = 2e-54
Identities = 98/319 (30%), Positives = 171/319 (53%), Gaps = 3/319 (0%)
Query: 407 LQQFSRDADEMENWIAEKL-QLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLA 465
Q F+ + + W++E LA+E+ KD A++ + +KHQ EA+++A+ DR++ + +
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 466 MGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLD 525
+L+ V+ + +I +++ + + KL E+++ + + D +
Sbjct: 65 QADSLMTSSAF--DTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEE 122
Query: 526 FWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD 585
W+ E + L++SED G+DL VQNL KKH+ +EA++ AH+ I+ + L D
Sbjct: 123 SWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIG 182
Query: 586 ASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDD 645
IQ++ + ++ +K LAA R RL E+ QF ++ +EE+WI EK LV S+D
Sbjct: 183 KEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASED 242
Query: 646 YGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQA 705
YG L +Q L KKH+ E + H+ + +V GE L+ +N V I ++K L
Sbjct: 243 YGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGK 302
Query: 706 WSELKQLAANRGQKLDESL 724
S+L++ AA R KLDE+
Sbjct: 303 VSDLEKAAAQRKAKLDENS 321
Score = 191 bits (486), Expect = 4e-54
Identities = 104/321 (32%), Positives = 174/321 (54%), Gaps = 3/321 (0%)
Query: 298 CLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGA 357
+ Q F + + W+S EA L +E+ +V L+KKH+ + I+AHE+++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 358 LQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEM 417
L + AD L+ + + + DKR+ + R++ +K +R++L ES L QF RD D+
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 418 ENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQC 476
E+WI EK L + E Y +D +Q+ +KH+ EAELAA+ IQ VL G+ L D
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 477 VGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLT 536
+E +Q RLA D W+ L Q + +L+E+ + + ++A V++ + W+ E +L+
Sbjct: 182 --GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVA 239
Query: 537 SEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSI 596
SED G LA++Q L+KKH+ E D H DR+ D+ + LI +I K + +
Sbjct: 240 SEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGL 299
Query: 597 NERYERIKNLAAHRQARLNEA 617
+ ++ AA R+A+L+E
Sbjct: 300 KGKVSDLEKAAAQRKAKLDEN 320
Score = 179 bits (455), Expect = 5e-50
Identities = 81/320 (25%), Positives = 153/320 (47%), Gaps = 3/320 (0%)
Query: 193 YDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAF 252
Q F + +D W++ + L++S++ D+ LL++HQ +I A +
Sbjct: 3 NKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDL 62
Query: 253 DLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAE 312
+ L+ S + + +++DK + + ++ ARR +L++ L F+RD + E
Sbjct: 63 NSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEE 122
Query: 313 NWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYA 372
+W+ ++ +++E+ V+ L KKH+ + + AHE I + +L +
Sbjct: 123 SWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIG 182
Query: 373 AKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQ-LATEE 431
+ I + Q +D W+ LK+ + RL ES QQF + +E E WI EK+ +A+E+
Sbjct: 183 KEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASED 242
Query: 432 SYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIA 491
A IQ +KH+AFE + + DR+ V A G++LI K E + A++ +
Sbjct: 243 YGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNH--HVENITAKMKGLK 300
Query: 492 DQWEFLTQKTTEKSLKLKEA 511
+ L + ++ KL E
Sbjct: 301 GKVSDLEKAAAQRKAKLDEN 320
Score = 165 bits (419), Expect = 3e-45
Identities = 79/294 (26%), Positives = 157/294 (53%), Gaps = 1/294 (0%)
Query: 4 QVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQ 63
+D G+DL V + KK ++D+ A+E RL ++N A LM+ + + +++ + +
Sbjct: 27 ASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTS-QVKDKRE 85
Query: 64 DLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQ 123
+N ++ ++ + A R +L +H + +F RD+D+ + WI+EK +++ D G+DL VQ
Sbjct: 86 TINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQ 145
Query: 124 ALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKAN 183
L++KH+ LE +LAA I+ + +T +L + E+ + + + W +L A
Sbjct: 146 NLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAA 205
Query: 184 TRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEID 243
R ++L +S + Q+F+++ + +WIN M LV+S++ + + + LL++H+ T+
Sbjct: 206 ARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFT 265
Query: 244 ARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQ 297
G+ L++ ++ I K+ L DLEKA R+ +LD+
Sbjct: 266 VHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDE 319
Score = 116 bits (293), Expect = 1e-28
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 1/190 (0%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQL 62
+D G DL V+ ++KK +++L A+E + + + +L T +IQ +L
Sbjct: 132 VSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDN-TIGKEEIQQRL 190
Query: 63 QDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSV 122
W L+QL A R +L + E Q+F +V+E + WI EK + + D G L ++
Sbjct: 191 AQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAI 250
Query: 123 QALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKA 182
Q L +KHE E D D++ + L++ + E AK K + + + L A
Sbjct: 251 QGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAA 310
Query: 183 NTRKEKLLDS 192
RK KL ++
Sbjct: 311 AQRKAKLDEN 320
Score = 110 bits (277), Expect = 2e-26
Identities = 51/330 (15%), Positives = 127/330 (38%), Gaps = 22/330 (6%)
Query: 834 QFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTL 893
F + W+++ E + SE+YG+DL++V LL K + +A + A E + ++++ +
Sbjct: 7 NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHE-DRLKDLNSQ 65
Query: 894 KDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKK 953
D L+ S+ T + + + R+Q++ + AR+ +L + F +
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ--------FFRD 117
Query: 954 ASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKS 1013
SW + + ++ + ++ LR+ H + +A L++ + + + +++
Sbjct: 118 MDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD 177
Query: 1014 FNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQ 1073
N + D W+ L+++ R L + Q +F +
Sbjct: 178 DNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQ--------QFVANVEEEEA 229
Query: 1074 WLTETRTSMMEG-----TGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHLILDN 1128
W+ E T + +++ L+ + + + + + G L +
Sbjct: 230 WINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHV 289
Query: 1129 RYTEHSTVGLAQQWDQLDQLGMRMQHNLEQ 1158
GL + L++ + + L++
Sbjct: 290 ENITAKMKGLKGKVSDLEKAAAQRKAKLDE 319
Score = 58.0 bits (140), Expect = 8e-09
Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 13/219 (5%)
Query: 950 FAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQ 1009
F F+ W E L + + L + H +A +S+ + + L +
Sbjct: 8 FNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQAD 67
Query: 1010 QIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHAN 1069
+ + + E + ++ ++ + R +L +F + +
Sbjct: 68 SLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKL--------NESHRLHQFFRDMD 119
Query: 1070 AFHQWLTETRTSMMEG-----TGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHL 1124
W+ E + + ++ + KR AE+ + ++ + D G L +
Sbjct: 120 DEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDN 179
Query: 1125 ILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQAR 1163
+ + W +L QL LE+ ++ +
Sbjct: 180 TIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQ 218
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 202 bits (513), Expect = 5e-56
Identities = 113/464 (24%), Positives = 207/464 (44%), Gaps = 27/464 (5%)
Query: 727 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 786
+ + E WI L TM A+Q L+ + + +
Sbjct: 14 EEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEI 73
Query: 787 GNKLIEAK------NHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYL------- 833
++ K S + + L + L++ L
Sbjct: 74 NFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLA 133
Query: 834 -QFMWKADVVESWIADKETHVKSEEY-GRDLSTVQTLLTKQETFDAGLHAFEHEGIQNIT 891
+F KA E+W KE + ++Y L+ V+ LL K E F++ L A + ++ I
Sbjct: 134 EKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDR-VEQIA 192
Query: 892 TLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFA 951
+ +L ++ + R + +W +L + R++ L RM++ I+ L+L FA
Sbjct: 193 AIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFA 252
Query: 952 KKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQI 1011
K+A+ FN+W E A EDL D +SIEEI++L AH QF+A+L A + +++ A+ ++
Sbjct: 253 KRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEV 312
Query: 1012 -------KSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEF 1064
NPY+ TM+ L W +++++ RD L +E RQ N+ LR++F
Sbjct: 313 EKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQF 372
Query: 1065 AKHANAFHQWLTET----RTSMMEGTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAIL 1120
A ANA W+ S ++ TG+LE Q+ +K+ + + ++++ K+E ++
Sbjct: 373 AAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLI 432
Query: 1121 EEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARN 1164
+E L+ DN++T ++ + W+ L R + +E QI R+
Sbjct: 433 QEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRD 476
Score = 133 bits (335), Expect = 6e-33
Identities = 89/444 (20%), Positives = 169/444 (38%), Gaps = 25/444 (5%)
Query: 627 IADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMD 686
I W++ + + L ++ ++KHK + + N +T ++ +
Sbjct: 27 IRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISN 86
Query: 687 VSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLT--------YQHFLAKVEEEEA 738
+P + + + AW L+Q + L + + F K E
Sbjct: 87 RPAF-MPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHET 145
Query: 739 WISEKQQLLSVEDY-GDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHH 797
W K+Q+L +DY ++ V+ LL+KH+AFE+D + H+DR I + +L E H
Sbjct: 146 WAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHD 205
Query: 798 ADSITQRCQQLQLKLDNLMALATKRKTKLMDNSA--------YLQFMWKADVVESWIADK 849
A ++ RCQ++ + D L L KR+ L +L+F +A +W+
Sbjct: 206 AVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGA 265
Query: 850 ETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEG------IQNITTLKDQLVASNHD 903
++ + +Q+L+T E F A L + E + +
Sbjct: 266 MEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISS 325
Query: 904 QTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNSWFEN 963
P ++ +W K+ R Q L + E L FA +A++ W +N
Sbjct: 326 SNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQN 385
Query: 964 AEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKSFNVGPNPYTW 1023
E++ + Q++ ++ + + + + L Q I+ V N +T
Sbjct: 386 KMEEIARSSI-QITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTN 444
Query: 1024 FTMEALEDTWRNLQKIIKERDIEL 1047
+TME + W L I E+
Sbjct: 445 YTMEHIRVGWELLLTTIARTINEV 468
Score = 130 bits (327), Expect = 7e-32
Identities = 65/435 (14%), Positives = 148/435 (34%), Gaps = 38/435 (8%)
Query: 4 QVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRL-----AEMNEIAMQLMSLGQTEAALKI 58
+ + + ++ ++ + F D++ K +V+ N + +L +
Sbjct: 35 ENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSE 94
Query: 59 QTQLQDLNQKWTSLQQLTAERATQLGSA--------HEVQRFHRDVDETKDWIQEKDEAL 110
+ D+ W L+Q L + H ++F + + W K++ L
Sbjct: 95 GKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQIL 154
Query: 111 NNND-LGKDLRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQK 169
D L V+AL RKHE E DLAA D++ Q+ A L + A + +
Sbjct: 155 LQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQ 214
Query: 170 EINEEWTQLTAKANTRKEKLLDSYDLQR--------FLSDYRDLMSWINSMMGLVSSDEL 221
+I ++W +L R+E L L F +W+ M + +
Sbjct: 215 KICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFI 274
Query: 222 ANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQ-------SGHYASVEIQDKL 274
+ + ++L+ H++ + + G Q+ ++ + ++ +
Sbjct: 275 VHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTM 334
Query: 275 GNLAEAREDLEKAWIARRMQLDQCLELQL--------FYRDCEQAENWMSAREAFLNAEE 326
L + +++ R L + L Q F W+ + +
Sbjct: 335 DELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSS 394
Query: 327 VDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDR 386
+ +E + + + ++ I ++ I L+ + A + K + + +
Sbjct: 395 IQITGA-LEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVG 453
Query: 387 WRLLKEALIEKRSRL 401
W LL + + +
Sbjct: 454 WELLLTTIARTINEV 468
Score = 126 bits (317), Expect = 1e-30
Identities = 69/463 (14%), Positives = 160/463 (34%), Gaps = 42/463 (9%)
Query: 301 LQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGA--- 357
++ + R + W+ +L + ++ ++ D+ + + +
Sbjct: 13 MEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLE 72
Query: 358 --LQTLADQLIAADHYAAKP--------IDDKRKQVLDRWRLLKEALIEKRSRLGESQTL 407
TL +L ++ A P I +++ + +E L+ + RL + L
Sbjct: 73 INFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHL 132
Query: 408 -QQFSRDADEMENWIAEKLQLATEESY--KDPANIQSKHQKHQAFEAELAANADRIQSVL 464
++F + A E W K Q+ ++ Y +++ +KH+AFE++LAA+ DR++ +
Sbjct: 133 AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIA 192
Query: 465 AMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEA--------NKQRT 516
A+ Q L + V R I DQW+ L T ++ L+
Sbjct: 193 AIAQELNELDYH--DAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLE 250
Query: 517 YIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQAD 576
+ + W+ L + +Q+LI H+ +A + D + + +
Sbjct: 251 FAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQN 310
Query: 577 SLIDSGQFDASS-------IQEKRQSINERYERIKNLAAHRQARLNEA--------NTLH 621
+ Q + +++++K L R L E
Sbjct: 311 EVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRR 370
Query: 622 QFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETG 681
QF WI+ K + +++ + K+ E + +++ I ++
Sbjct: 371 QFAAQANAIGPWIQNKMEEIARSSIQ-ITGALEDQMNQLKQYEHNIINYKNNIDKLEGDH 429
Query: 682 EKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESL 724
+ + + ++ + W L A +++ +
Sbjct: 430 QLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQI 472
Score = 122 bits (307), Expect = 2e-29
Identities = 67/460 (14%), Positives = 154/460 (33%), Gaps = 40/460 (8%)
Query: 90 QRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDET 149
+ + R E +WI+ L N K ++++Q R + + E
Sbjct: 14 EEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEI 73
Query: 150 ANRLMQT------HPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYD--------L 195
+QT P +I W +L +E LL+
Sbjct: 74 NFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLA 133
Query: 196 QRFLSDYRDLMSWINSMM-GLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDL 254
++F +W L+ D + +T ALL +H+ +++ A +
Sbjct: 134 EKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAA 193
Query: 255 FGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQ--------LFYR 306
Q+L + ++ +V + D+ + + + L RR L++ +L F +
Sbjct: 194 IAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAK 253
Query: 307 DCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLI 366
NWM L + + +++LI HE F + + + ++ + +++
Sbjct: 254 RAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVE 313
Query: 367 A-------ADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGES--------QTLQQFS 411
+ ++ +W +K+ + + L E + +QF+
Sbjct: 314 KVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFA 373
Query: 412 RDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLI 471
A+ + WI K++ S + ++ + + + +E + + I + Q +
Sbjct: 374 AQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQ 433
Query: 472 DKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEA 511
+ V + + I WE L +++
Sbjct: 434 E--ALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQ 471
Score = 75.3 bits (184), Expect = 5e-14
Identities = 62/346 (17%), Positives = 134/346 (38%), Gaps = 18/346 (5%)
Query: 839 ADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLV 898
A + WI +++ + + +Q L + + + + + L
Sbjct: 20 ASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQ 79
Query: 899 A-----SNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKK 953
+ P+ K D+ WQ+L ++ LL + ++E L F +K
Sbjct: 80 TKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQK 139
Query: 954 ASSFNSWFENAEEDLTDP-VRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIK 1012
AS+ +W E+ L S+ E+RAL H F++ L++ Q E +AA+ Q++
Sbjct: 140 ASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELN 199
Query: 1013 SFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFH 1072
+ + + D W L + ++R L + + D L EFAK A F+
Sbjct: 200 ELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFN 259
Query: 1073 QWLTETRTSMMEGT-----GSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEE----- 1122
W+ + + ++ + A ++ A + + + I + +E+
Sbjct: 260 NWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSY 319
Query: 1123 --HLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNQS 1166
+ N Y+ + L +WD++ QL +L++++ ++ +
Sbjct: 320 NIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHAN 365
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 193 bits (492), Expect = 8e-55
Identities = 70/325 (21%), Positives = 136/325 (41%), Gaps = 2/325 (0%)
Query: 191 DSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQ 250
++ + Q++ D + +WI V SDE+ D GA +L+RH + ++ +
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 251 AFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQ 310
Q LL +GH +I G + + L+ R+ +L+ L R+ +
Sbjct: 62 QLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDD 121
Query: 311 AENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINA-HEEKIGALQTLADQLIAAD 369
E W+S +E ++ E+ D+V L K DF + A +E++ + ++LI A
Sbjct: 122 LEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAG 181
Query: 370 HYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLAT 429
H A I + + + + W L E + + L S L ++ E+ I EK +
Sbjct: 182 HSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP 241
Query: 430 EESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLAS 489
E+ D + +S H+ H AFE ++ ++Q + L +E +Q +
Sbjct: 242 EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEA-IQNKEQE 300
Query: 490 IADQWEFLTQKTTEKSLKLKEANKQ 514
++ W+ L + +L + +
Sbjct: 301 VSAAWQALLDACAGRRTQLVDTADK 325
Score = 191 bits (486), Expect = 4e-54
Identities = 80/325 (24%), Positives = 143/325 (44%), Gaps = 3/325 (0%)
Query: 510 EANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIK 569
AN+ + Y + + W+GE E + S++ KD ++K+H + ++ + IK
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 570 DMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIAD 629
+ +A L+ +G + I + +++ Y +K++A R+ +L L Q R+ D
Sbjct: 62 QLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDD 121
Query: 630 EESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAEL-ASHQPAIQNVQETGEKLMDVS 688
E WI EK+L+ S + G+D V L+ K + E A Q + NV E+L+D
Sbjct: 122 LEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAG 181
Query: 689 NLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLS 748
+ I + LN+ W++L +L R Q L S + E I EK + L
Sbjct: 182 HSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP 241
Query: 749 VEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNH-HADSITQRCQQ 807
ED G + + + H AFE D + + +L A A++I + Q+
Sbjct: 242 -EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQE 300
Query: 808 LQLKLDNLMALATKRKTKLMDNSAY 832
+ L+ R+T+L+D +
Sbjct: 301 VSAAWQALLDACAGRRTQLVDTADK 325
Score = 190 bits (485), Expect = 7e-54
Identities = 71/328 (21%), Positives = 147/328 (44%), Gaps = 4/328 (1%)
Query: 615 NEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAI 674
+ AN Q++ D + E+WI E++L V SD+ +D G + K+H R + + + I
Sbjct: 1 SNANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNI 60
Query: 675 QNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVE 734
+ + + L+ + +I + +++ ++ LK +A R +KL+ + +
Sbjct: 61 KQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETD 120
Query: 735 EEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETD-FSVHRDRCADICSAGNKLIEA 793
+ E WISEK+ + S + G V L K F + ++ ++R ++ + +LI+A
Sbjct: 121 DLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDA 180
Query: 794 KNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHV 853
+ A +I + L +L+ L R L + ++ + + I +K +
Sbjct: 181 GHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL 240
Query: 854 KSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNH-DQTPAIVKRH 912
E+ G D ST ++ F+ +H + +Q + +L + ++ AI +
Sbjct: 241 -PEDVGLDASTAESFHRVHTAFERDVHLLGVQ-VQQFQDVATRLQTAYAGEKAEAIQNKE 298
Query: 913 GDVIARWQKLLGDSNARKQRLLRMQEQF 940
+V A WQ LL R+ +L+ ++F
Sbjct: 299 QEVSAAWQALLDACAGRRTQLVDTADKF 326
Score = 185 bits (471), Expect = 5e-52
Identities = 72/325 (22%), Positives = 135/325 (41%), Gaps = 6/325 (1%)
Query: 403 ESQTLQQFSRDADEMENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQ 461
+ QQ+ DADE E WI E+ L + ++E KD ++H + + I+
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 462 SVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAV 521
+ + Q L+ E + + + L E+ KL+
Sbjct: 62 QLASRAQGLLSAGHP--EGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRET 119
Query: 522 KDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQA-HDDRIKDMNGQADSLID 580
DL+ W+ E E + +S + G+D V L K + + A +R+ ++N + LID
Sbjct: 120 DDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLID 179
Query: 581 SGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLL 640
+G +A++I E + +NE + + L R L + LH++F A+ I EK
Sbjct: 180 AGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRE 239
Query: 641 VGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPE-IEQRL 699
+ +D G D + ++ + H E ++ +Q Q+ +L E I+ +
Sbjct: 240 L-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKE 298
Query: 700 KLLNQAWSELKQLAANRGQKLDESL 724
+ ++ AW L A R +L ++
Sbjct: 299 QEVSAAWQALLDACAGRRTQLVDTA 323
Score = 177 bits (449), Expect = 4e-49
Identities = 72/328 (21%), Positives = 142/328 (43%), Gaps = 5/328 (1%)
Query: 85 SAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIR 144
+A+E Q+++ D DE + WI E++ + ++++ KD + ++H +R + G I+
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 145 QLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRD 204
QL A L+ EQ Q ++++ + L A RK KL + Y L + + D
Sbjct: 62 QLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDD 121
Query: 205 LMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDA-RTGTFQAFDLFGQQLLQSG 263
L WI+ + SS E+ D L ++ ++ E A + F ++L+ +G
Sbjct: 122 LEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAG 181
Query: 264 HYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAFLN 323
H + I + L E DL + R L +L ++ + + + L
Sbjct: 182 HSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP 241
Query: 324 AEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHY-AAKPIDDKRKQ 382
+ E+ + H F++ ++ ++ Q +A +L A A+ I +K ++
Sbjct: 242 EDVGLD-ASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQE 300
Query: 383 VLDRWRLLKEALIEKRSRLGESQTLQQF 410
V W+ L +A +R++L T +F
Sbjct: 301 VSAAWQALLDACAGRRTQL--VDTADKF 326
Score = 148 bits (376), Expect = 2e-39
Identities = 63/298 (21%), Positives = 128/298 (42%), Gaps = 4/298 (1%)
Query: 6 QDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDL 65
++ +D E VM K+ Q ++ + ++ A L+S G E +I +
Sbjct: 30 DEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGE-QIIRLQGQV 88
Query: 66 NQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQAL 125
++ + L+ + ER +L + + + + R+ D+ + WI EK+ ++ ++G+D V L
Sbjct: 89 DKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLL 148
Query: 126 QRKHEGLERDLAALG-DKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANT 184
+ K R+ A+G +++ ++ RL+ A + +NE W L +T
Sbjct: 149 RDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDT 208
Query: 185 RKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDA 244
R + L SYDL R+ +++ I+ + +++ D + AE+ H ++
Sbjct: 209 RMQLLAASYDLHRYFYTGAEILGLIDEKHREL-PEDVGLDASTAESFHRVHTAFERDVHL 267
Query: 245 RTGTFQAFDLFGQQLLQSGHY-ASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLEL 301
Q F +L + + IQ+K ++ A + L A RR QL +
Sbjct: 268 LGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADK 325
Score = 144 bits (365), Expect = 5e-38
Identities = 58/327 (17%), Positives = 113/327 (34%), Gaps = 10/327 (3%)
Query: 722 ESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCA 781
+ Q + +E EAWI E++ + ++ +LK+H + +
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 782 DICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADV 841
+ S L+ A + + I + Q+ L +A +RK KL + Q + D
Sbjct: 62 QLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDD 121
Query: 842 VESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASN 901
+E WI++KE S E G+D V L K F A E + N+ ++L+ +
Sbjct: 122 LEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAG 181
Query: 902 HDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNSWF 961
H + I + + W LL + R Q L + R + +
Sbjct: 182 HSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHR--------YFYTGAEILGLI 233
Query: 962 ENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKSFNVGPN-P 1020
+ +L + V + H F+ + + + ++++ G
Sbjct: 234 DEKHRELPEDV-GLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAE 292
Query: 1021 YTWFTMEALEDTWRNLQKIIKERDIEL 1047
+ + W+ L R +L
Sbjct: 293 AIQNKEQEVSAAWQALLDACAGRRTQL 319
Score = 123 bits (310), Expect = 8e-31
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 4/195 (2%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKA-NEVRLAEMNEIAMQLMSLGQTEAALKIQTQ 61
A ++G+D + V +++ KF DF + A + R+ +N +L+ G +EAA I
Sbjct: 133 ASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAA-TIAEW 191
Query: 62 LQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRS 121
LN+ W L +L R L +++++ R+ E I EK L D+G D +
Sbjct: 192 KDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL-PEDVGLDAST 250
Query: 122 VQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHP-ETAEQTYAKQKEINEEWTQLTA 180
++ R H ERD+ LG +++Q + A RL + E AE K++E++ W L
Sbjct: 251 AESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLD 310
Query: 181 KANTRKEKLLDSYDL 195
R+ +L+D+ D
Sbjct: 311 ACAGRRTQLVDTADK 325
Score = 101 bits (252), Expect = 4e-23
Identities = 49/334 (14%), Positives = 108/334 (32%), Gaps = 23/334 (6%)
Query: 834 QFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTL 893
Q+ AD E+WI ++E +V S+E +D +L + + + I+ + +
Sbjct: 8 QYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRN-IKQLASR 66
Query: 894 KDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKK 953
L+++ H + I++ G V + L + RK++L M F+ ++
Sbjct: 67 AQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQ--------LKRE 118
Query: 954 ASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQAD-FEALAALDQQIK 1012
W E + P + + LR+ F + + + + A +++
Sbjct: 119 TDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLI 178
Query: 1013 SFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFH 1072
+ L + W +L ++I R LA +
Sbjct: 179 DAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLH--------RYFYTGAEIL 230
Query: 1073 QWLTETRTSMMEGTGSLEQQLEAIKRK----AAEVRSRRSDLKKIEDLGAILEEHLILDN 1128
+ E + E G E+ R +V +++ +D+ L+ +
Sbjct: 231 GLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEK 290
Query: 1129 RYTEHSTVG-LAQQWDQLDQLGMRMQHNLEQQIQ 1161
+ ++ W L + L
Sbjct: 291 AEAIQNKEQEVSAAWQALLDACAGRRTQLVDTAD 324
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 192 bits (490), Expect = 1e-54
Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 4/295 (1%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKA-NEVRLAEMNEIAMQLMSLGQTEAALKIQTQ 61
A ++G+D E V ++Q++F +F D + R+ +N +A +L++ G ++AA I
Sbjct: 29 AGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAA-TIAEW 87
Query: 62 LQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRS 121
LN+ W L +L R L +++E+ +F+ D E IQ+K + L +LG+D +
Sbjct: 88 KDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPE-ELGRDQNT 146
Query: 122 VQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHP-ETAEQTYAKQKEINEEWTQLTA 180
V+ LQR H E D+ ALG ++RQL E A RL + + A+ ++ E+ E W L
Sbjct: 147 VETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLD 206
Query: 181 KANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRT 240
+R+ +L+D+ D RF S RDLM W+ ++ + + E DV+ E L+ HQ +
Sbjct: 207 ACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKA 266
Query: 241 EIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQL 295
EIDAR +F G+ LL HYAS EI++KL L E R+++ W R L
Sbjct: 267 EIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWL 321
Score = 185 bits (472), Expect = 3e-52
Identities = 68/321 (21%), Positives = 140/321 (43%), Gaps = 3/321 (0%)
Query: 508 LKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADI-QAHDD 566
++ V DL+ W+ E E + S + G+D V L ++ + D +
Sbjct: 2 SHMRHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQE 61
Query: 567 RIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRD 626
R+ +N AD LI+SG DA++I E + +NE + + L R L + LH+F+ D
Sbjct: 62 RVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHD 121
Query: 627 IADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMD 686
+ I++K + ++ GRD V+ L++ H E ++ + ++ +QE +L
Sbjct: 122 AKEIFGRIQDKHKKL-PEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQA 180
Query: 687 VS-NLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQ 745
+I++R + +AW L +R +L ++ F + V + W+ + +
Sbjct: 181 AYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIR 240
Query: 746 LLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRC 805
+ ++ +++V+ L+ H + + D G L+ K++ ++ I ++
Sbjct: 241 QIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKL 300
Query: 806 QQLQLKLDNLMALATKRKTKL 826
QL K ++ R L
Sbjct: 301 LQLTEKRKEMIDKWEDRWEWL 321
Score = 179 bits (456), Expect = 4e-50
Identities = 68/315 (21%), Positives = 144/315 (45%), Gaps = 2/315 (0%)
Query: 301 LQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAI-NAHEEKIGALQ 359
L R+ + E W++ RE + E+ ++V L ++ +F + N +E++ +
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 360 TLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMEN 419
LAD+LI + H A I + + + + W L E + + L S L +F DA E+
Sbjct: 68 HLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFG 127
Query: 420 WIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGS 479
I +K + EE +D +++ + H FE ++ A +++ + L
Sbjct: 128 RIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYA-GDK 186
Query: 480 EEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSED 539
+ +Q R + + W+ L + ++L + + + + V+DL W+ +V + +++
Sbjct: 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQE 246
Query: 540 SGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINER 599
+D++SV+ L+ HQ ++A+I A +D SL+ + + I+EK + E+
Sbjct: 247 KPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEK 306
Query: 600 YERIKNLAAHRQARL 614
+ + + R L
Sbjct: 307 RKEMIDKWEDRWEWL 321
Score = 178 bits (454), Expect = 8e-50
Identities = 69/316 (21%), Positives = 136/316 (43%), Gaps = 4/316 (1%)
Query: 620 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS-HQPAIQNVQ 678
L Q R++ D E WI E++++ GS + G+D V L+++ + + + Q + V
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 679 ETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEA 738
++L++ + I + LN+AW++L +L R Q L S F +E
Sbjct: 68 HLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFG 127
Query: 739 WISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHH- 797
I +K + L E+ G V+ L + H FE D + + +L A
Sbjct: 128 RIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDK 186
Query: 798 ADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEE 857
AD I +R ++ +L+ R+ +L+D +F + W+ D ++++E
Sbjct: 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQE 246
Query: 858 YGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIA 917
RD+S+V+ L+ + A + A + L L+A H + I ++ +
Sbjct: 247 KPRDVSSVELLMNNHQGIKAEIDARN-DSFTTCIELGKSLLARKHYASEEIKEKLLQLTE 305
Query: 918 RWQKLLGDSNARKQRL 933
+ ++++ R + L
Sbjct: 306 KRKEMIDKWEDRWEWL 321
Score = 172 bits (437), Expect = 1e-47
Identities = 71/318 (22%), Positives = 137/318 (43%), Gaps = 3/318 (0%)
Query: 86 AHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALG-DKIR 144
H + + +R+VD+ + WI E++ +++LG+D V LQ + RD +G +++
Sbjct: 5 RHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVD 64
Query: 145 QLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRD 204
++ A+ L+ + A + +NE W L +TR + L SY+L +F D ++
Sbjct: 65 TVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKE 124
Query: 205 LMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQS-G 263
+ I + +EL D E L H +I A + +L +
Sbjct: 125 IFGRIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYA 183
Query: 264 HYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAFLN 323
+ +IQ + + EA + L A +RR++L + F+ WM +
Sbjct: 184 GDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIE 243
Query: 324 AEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQV 383
A+E +VE L+ H+ I+A + L L+A HYA++ I +K Q+
Sbjct: 244 AQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQL 303
Query: 384 LDRWRLLKEALIEKRSRL 401
++ + + + ++ L
Sbjct: 304 TEKRKEMIDKWEDRWEWL 321
Score = 168 bits (428), Expect = 2e-46
Identities = 62/317 (19%), Positives = 139/317 (43%), Gaps = 6/317 (1%)
Query: 407 LQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAEL-AANADRIQSVL 464
L Q +R+ D++E WIAE+ +A +D ++ ++ + F + +R+ +V
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 465 AMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDL 524
+ LI+ + + + W L + ++ L + + + K++
Sbjct: 68 HLADELINSGHS--DAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEI 125
Query: 525 DFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDS-GQ 583
+ + L E+ G+D +V+ L + H E DIQA +++ + A L +
Sbjct: 126 FGRIQDKHKKL-PEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAG 184
Query: 584 FDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGS 643
A IQ++ + E ++ + + R+ RL + +FF + D W+++ + +
Sbjct: 185 DKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEA 244
Query: 644 DDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLN 703
+ RD++ V+ L H+ ++AE+ + + E G+ L+ + EI+++L L
Sbjct: 245 QEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLT 304
Query: 704 QAWSELKQLAANRGQKL 720
+ E+ +R + L
Sbjct: 305 EKRKEMIDKWEDRWEWL 321
Score = 160 bits (405), Expect = 3e-43
Identities = 73/320 (22%), Positives = 137/320 (42%), Gaps = 6/320 (1%)
Query: 193 YDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDA-RTGTFQA 251
+ L + + DL WI + S EL D L ER +E +
Sbjct: 6 HRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDT 65
Query: 252 FDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQA 311
+ +L+ SGH + I + L EA DL + R L EL FY D ++
Sbjct: 66 VNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEI 125
Query: 312 ENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAAD-H 370
+ + L EE+ + VE L + H F+ I A ++ LQ A +L AA
Sbjct: 126 FGRIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAG 184
Query: 371 YAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEK-LQLAT 429
A I + +VL+ W+ L +A +R RL ++ +F ++ W+ + Q+
Sbjct: 185 DKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEA 244
Query: 430 EESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLAS 489
+E +D ++++ HQ +AE+ A D + + +G++L+ + + E ++ +L
Sbjct: 245 QEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLAR--KHYASEEIKEKLLQ 302
Query: 490 IADQWEFLTQKTTEKSLKLK 509
+ ++ + + K ++ L+
Sbjct: 303 LTEKRKEMIDKWEDRWEWLR 322
Score = 98.5 bits (245), Expect = 3e-22
Identities = 52/329 (15%), Positives = 103/329 (31%), Gaps = 23/329 (6%)
Query: 834 QFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTL 893
Q + D +E WIA++E S E G+D V L + F E + + L
Sbjct: 10 QLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHL 69
Query: 894 KDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKK 953
D+L+ S H I + + W LL + R Q L E + F
Sbjct: 70 ADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHK--------FYHD 121
Query: 954 ASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKS 1013
A ++ + L + + + L+ H F+ + + L ++++
Sbjct: 122 AKEIFGRIQDKHKKLPEEL-GRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQA 180
Query: 1014 FNVGPNPYT-WFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFH 1072
G + + W++L + R + L + F
Sbjct: 181 AYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKF--------RFFSMVRDLM 232
Query: 1073 QWLTETRTSMM-----EGTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHLILD 1127
W+ + + S+E + + AE+ +R +LG L
Sbjct: 233 LWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYA 292
Query: 1128 NRYTEHSTVGLAQQWDQLDQLGMRMQHNL 1156
+ + + L ++ ++ L
Sbjct: 293 SEEIKEKLLQLTEKRKEMIDKWEDRWEWL 321
Score = 40.7 bits (95), Expect = 0.002
Identities = 24/218 (11%), Positives = 63/218 (28%), Gaps = 14/218 (6%)
Query: 950 FAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSA-QADFEALAALD 1008
++ W E E + L+E +F + Q + + L
Sbjct: 11 LNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLA 70
Query: 1009 QQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHA 1068
++ + + L + W +L ++I R LA +F A
Sbjct: 71 DELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELH--------KFYHDA 122
Query: 1069 NAFHQWLTETRTSMMEGTG----SLEQQLEAIKRKAAEVRSRRSDLKKIEDLGA-ILEEH 1123
+ + + E G ++E ++++ + ++++++ A + +
Sbjct: 123 KEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAY 182
Query: 1124 LILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQ 1161
+ + + W L + L
Sbjct: 183 AGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGD 220
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 182 bits (462), Expect = 3e-52
Identities = 157/217 (72%), Positives = 172/217 (79%)
Query: 182 ANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTE 241
+ DS+DLQRFLSD+RDLMSWIN + GLVSSDELA DVTGAEALLERHQEHRTE
Sbjct: 2 GHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTE 61
Query: 242 IDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLEL 301
IDAR GTFQAF+ FGQQLL GHYAS EI+ KL L + R DLEKAW+ RRM LDQCLEL
Sbjct: 62 IDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLEL 121
Query: 302 QLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTL 361
QLF+RDCEQAENWM+AREAFLN E+ D+VEALIKKHEDFDKAIN EEKI ALQ
Sbjct: 122 QLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAF 181
Query: 362 ADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKR 398
ADQLIAA HYA I +R +VLDRWR LK +IEKR
Sbjct: 182 ADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218
Score = 155 bits (392), Expect = 9e-43
Identities = 58/218 (26%), Positives = 118/218 (54%)
Query: 606 LAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEA 665
+ H ++++ L +F D D SWI + LV SD+ +D+TG + L ++H+
Sbjct: 1 MGHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRT 60
Query: 666 ELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLT 725
E+ + Q ++ G++L+ + PEI+Q+L +L+Q ++L++ R LD+ L
Sbjct: 61 EIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLE 120
Query: 726 YQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICS 785
Q F E+ E W++ ++ L+ ED GD++ +V+ L+KKH+ F+ +V ++ A + +
Sbjct: 121 LQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQA 180
Query: 786 AGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRK 823
++LI A ++ I+ R ++ + L A +++
Sbjct: 181 FADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218
Score = 130 bits (328), Expect = 3e-34
Identities = 40/214 (18%), Positives = 94/214 (43%)
Query: 503 EKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQ 562
+++ + +++ +DL W+ + L++S++ KD+ + L+++HQ +I
Sbjct: 4 HHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEID 63
Query: 563 AHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQ 622
A + L+ G + + I++K +++ ++ R+ L++ L
Sbjct: 64 ARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQL 123
Query: 623 FFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGE 682
F RD E+W+ ++ + ++D G L V+ L KKH+ + + + I +Q +
Sbjct: 124 FHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFAD 183
Query: 683 KLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANR 716
+L+ + +I R + W LK +
Sbjct: 184 QLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEK 217
Score = 125 bits (316), Expect = 1e-32
Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 1/219 (0%)
Query: 712 LAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFET 771
+ + +S Q FL+ + +WI+ + L+S ++ + + LL++H T
Sbjct: 1 MGHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRT 60
Query: 772 DFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSA 831
+ G +L+ ++ + I Q+ L + +L +R+ L
Sbjct: 61 EIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLE 120
Query: 832 YLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNIT 891
F + E+W+A +E + +E+ G L +V+ L+ K E FD ++ E E I +
Sbjct: 121 LQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQE-EKIAALQ 179
Query: 892 TLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARK 930
DQL+A+ H I R +V+ RW++L ++
Sbjct: 180 AFADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218
Score = 124 bits (313), Expect = 3e-32
Identities = 42/218 (19%), Positives = 95/218 (43%)
Query: 75 LTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLER 134
+ +H++QRF D + WI +++++L KD+ +AL +H+
Sbjct: 1 MGHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRT 60
Query: 135 DLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYD 194
++ A + ++ +L+ + + K +++E L R+ L +
Sbjct: 61 EIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLE 120
Query: 195 LQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDL 254
LQ F D +W+ + +++++ + + EAL+++H++ I+ + A
Sbjct: 121 LQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQA 180
Query: 255 FGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARR 292
F QL+ +GHYA +I + + + L+ I +R
Sbjct: 181 FADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218
Score = 122 bits (308), Expect = 1e-31
Identities = 50/218 (22%), Positives = 99/218 (45%), Gaps = 3/218 (1%)
Query: 288 WIARRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKA 347
+LQ F D +W++ ++++E+ EAL+++H++
Sbjct: 2 GHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTE 61
Query: 348 INAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTL 407
I+A A + QL+A HYA+ I K + L++A +++R L + L
Sbjct: 62 IDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLEL 121
Query: 408 QQFSRDADEMENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAM 466
Q F RD ++ ENW+A + L TE+ ++++ +KH+ F+ + ++I ++ A
Sbjct: 122 QLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAF 181
Query: 467 GQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEK 504
LI ++ + +R + D+W L + EK
Sbjct: 182 ADQLIAAGHY--AKGDISSRRNEVLDRWRRLKAQMIEK 217
Score = 121 bits (306), Expect = 3e-31
Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 3/216 (1%)
Query: 396 EKRSRLGESQTLQQFSRDADEMENWIAEKL-QLATEESYKDPANIQSKHQKHQAFEAELA 454
+S LQ+F D ++ +WI ++++E KD ++ ++HQ E+
Sbjct: 4 HHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEID 63
Query: 455 ANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQ 514
A A Q+ GQ L+ + ++ +L + + L + ++ + L + +
Sbjct: 64 ARAGTFQAFEQFGQQLLAHGH--YASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLEL 121
Query: 515 RTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQ 574
+ + + + W+ E+ L +ED G L SV+ LIKKH+ + I +++I +
Sbjct: 122 QLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAF 181
Query: 575 ADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHR 610
AD LI +G + I +R + +R+ R+K +
Sbjct: 182 ADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEK 217
Score = 105 bits (264), Expect = 1e-25
Identities = 42/184 (22%), Positives = 92/184 (50%), Gaps = 1/184 (0%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQL 62
++ +D+ E + ++ + ++++ A + QL++ G A+ +I+ +L
Sbjct: 36 VSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGH-YASPEIKQKL 94
Query: 63 QDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSV 122
L+Q+ L++ +R L E+Q FHRD ++ ++W+ ++ LN D G L SV
Sbjct: 95 DILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSV 154
Query: 123 QALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKA 182
+AL +KHE ++ + +KI L A++L+ +++ E+ + W +L A+
Sbjct: 155 EALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQM 214
Query: 183 NTRK 186
++
Sbjct: 215 IEKR 218
Score = 83.4 bits (206), Expect = 5e-18
Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 9/226 (3%)
Query: 818 LATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDA 877
+ D+ +F+ + SWI V S+E +D++ + LL + +
Sbjct: 1 MGHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRT 60
Query: 878 GLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQ 937
+ A Q QL+A H +P I ++ + L R+ L +
Sbjct: 61 EIDARA-GTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCL 119
Query: 938 EQFRQIEDLYLTFAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSA 997
E F + +W E L + +S++ + AL + H F +++
Sbjct: 120 E--------LQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQ 171
Query: 998 QADFEALAALDQQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKER 1043
+ AL A Q+ + + D WR L+ + E+
Sbjct: 172 EEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEK 217
Score = 29.5 bits (66), Expect = 6.7
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 1063 EFAKHANAFHQWLTETRTSMMEGT-----GSLEQQLEAIKRKAAEVRSRRSDLKKIEDLG 1117
F W+ R + E LE + E+ +R + E G
Sbjct: 17 RFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFG 76
Query: 1118 AILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQAR 1163
L H + + L Q+ L++ ++ + L+Q ++ +
Sbjct: 77 QQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQ 122
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 173 bits (441), Expect = 2e-49
Identities = 136/212 (64%), Positives = 171/212 (80%)
Query: 620 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQE 679
+HQFFRD+ DEESWIKEKKLLV S+DYGRDLTGVQNL+KKHKRLEAELA+H+PAIQ+V +
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 680 TGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAW 739
TG+KL D + +G EI+QRL W ELKQLAA RGQ+L+ESL YQ F+A VEEEEAW
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 740 ISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHAD 799
I+EK L++ EDYGDT+AA+QGLLKKH+AFETDF+VH+DR D+C+ G LI+ NHH +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 800 SITQRCQQLQLKLDNLMALATKRKTKLMDNSA 831
+IT + + L+ K+ +L A +RK KL +NSA
Sbjct: 182 NITAKMKGLKGKVSDLEKAAAQRKAKLDENSA 213
Score = 146 bits (370), Expect = 5e-40
Identities = 74/208 (35%), Positives = 115/208 (55%)
Query: 517 YIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQAD 576
+ + D + W+ E + L++SED G+DL VQNL KKH+ +EA++ AH+ I+ +
Sbjct: 5 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGK 64
Query: 577 SLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKE 636
L D IQ++ + ++ +K LAA R RL E+ QF ++ +EE+WI E
Sbjct: 65 KLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINE 124
Query: 637 KKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIE 696
K LV S+DYG L +Q L KKH+ E + H+ + +V GE L+ +N V I
Sbjct: 125 KMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENIT 184
Query: 697 QRLKLLNQAWSELKQLAANRGQKLDESL 724
++K L S+L++ AA R KLDE+
Sbjct: 185 AKMKGLKGKVSDLEKAAAQRKAKLDENS 212
Score = 141 bits (357), Expect = 3e-38
Identities = 52/210 (24%), Positives = 106/210 (50%)
Query: 195 LQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDL 254
+ +F D D SWI LVSS++ D+TG + L ++H+ E+ A Q+
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 255 FGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENW 314
G++L EIQ +L + ++L++ AR +L++ LE Q F + E+ E W
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 315 MSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAK 374
++ + + +E+ ++ L+KKHE F+ H++++ + + LI +++ +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 375 PIDDKRKQVLDRWRLLKEALIEKRSRLGES 404
I K K + + L++A +++++L E+
Sbjct: 182 NITAKMKGLKGKVSDLEKAAAQRKAKLDEN 211
Score = 129 bits (325), Expect = 7e-34
Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 3/212 (1%)
Query: 407 LQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQSVLA 465
+ QF RD D+ E+WI EK L + E Y +D +Q+ +KH+ EAELAA+ IQSVL
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 466 MGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLD 525
G+ L D +E +Q RLA D W+ L Q + +L+E+ + + ++A V++ +
Sbjct: 62 TGKKLSDDNTI--GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEE 119
Query: 526 FWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD 585
W+ E +L+ SED G LA++Q L+KKH+ E D H DR+ D+ + LI
Sbjct: 120 AWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHH 179
Query: 586 ASSIQEKRQSINERYERIKNLAAHRQARLNEA 617
+I K + + + ++ AA R+A+L+E
Sbjct: 180 VENITAKMKGLKGKVSDLEKAAAQRKAKLDEN 211
Score = 125 bits (316), Expect = 1e-32
Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 1/207 (0%)
Query: 727 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 786
F +++EE+WI EK+ L+S EDYG + VQ L KKH E + + H +
Sbjct: 3 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDT 62
Query: 787 GNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWI 846
G KL + + I QR Q L LA R +L ++ Y QF+ + E+WI
Sbjct: 63 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWI 122
Query: 847 ADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTP 906
+K T V SE+YG L+ +Q LL K E F+ + + + ++ + L+ N+
Sbjct: 123 NEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHK-DRVNDVCANGEDLIKKNNHHVE 181
Query: 907 AIVKRHGDVIARWQKLLGDSNARKQRL 933
I + + + L + RK +L
Sbjct: 182 NITAKMKGLKGKVSDLEKAAAQRKAKL 208
Score = 124 bits (312), Expect = 3e-32
Identities = 58/208 (27%), Positives = 110/208 (52%)
Query: 90 QRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDET 149
+F RD+D+ + WI+EK +++ D G+DL VQ L++KH+ LE +LAA I+ + +T
Sbjct: 3 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDT 62
Query: 150 ANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSWI 209
+L + E+ + + + W +L A R ++L +S + Q+F+++ + +WI
Sbjct: 63 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWI 122
Query: 210 NSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVE 269
N M LV+S++ + + + LL++H+ T+ G+ L++ ++
Sbjct: 123 NEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVEN 182
Query: 270 IQDKLGNLAEAREDLEKAWIARRMQLDQ 297
I K+ L DLEKA R+ +LD+
Sbjct: 183 ITAKMKGLKGKVSDLEKAAAQRKAKLDE 210
Score = 123 bits (309), Expect = 8e-32
Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 3/212 (1%)
Query: 301 LQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQT 360
+ F+RD + E+W+ ++ +++E+ V+ L KKH+ + + AHE I ++
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 361 LADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENW 420
+L + + I + Q +D W+ LK+ + RL ES QQF + +E E W
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 421 IAEKL-QLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGS 479
I EK+ +A+E+ A IQ +KH+AFE + + DR+ V A G++LI +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIK--KNNHH 179
Query: 480 EEAVQARLASIADQWEFLTQKTTEKSLKLKEA 511
E + A++ + + L + ++ KL E
Sbjct: 180 VENITAKMKGLKGKVSDLEKAAAQRKAKLDEN 211
Score = 116 bits (292), Expect = 1e-29
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 1/191 (0%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQL 62
+D G DL V+ ++KK +++L A+E + + + +L +IQ +L
Sbjct: 23 VSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNT-IGKEEIQQRL 81
Query: 63 QDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSV 122
W L+QL A R +L + E Q+F +V+E + WI EK + + D G L ++
Sbjct: 82 AQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAI 141
Query: 123 QALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKA 182
Q L +KHE E D D++ + L++ + E AK K + + + L A
Sbjct: 142 QGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAA 201
Query: 183 NTRKEKLLDSY 193
RK KL ++
Sbjct: 202 AQRKAKLDENS 212
Score = 86.5 bits (214), Expect = 4e-19
Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 9/214 (4%)
Query: 834 QFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTL 893
QF D ESWI +K+ V SE+YGRDL+ VQ L K + +A L A E IQ++
Sbjct: 4 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPA-IQSVLDT 62
Query: 894 KDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKK 953
+L N I +R + W++L + AR QRL E Y F
Sbjct: 63 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE--------YQQFVAN 114
Query: 954 ASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKS 1013
+W + +++ I+ L + H F+ + + + A + +
Sbjct: 115 VEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIK 174
Query: 1014 FNVGPNPYTWFTMEALEDTWRNLQKIIKERDIEL 1047
N M+ L+ +L+K +R +L
Sbjct: 175 KNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKL 208
Score = 48.4 bits (115), Expect = 4e-06
Identities = 28/214 (13%), Positives = 74/214 (34%), Gaps = 13/214 (6%)
Query: 950 FAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQ 1009
F + SW + + ++ + ++ LR+ H + +A L++ + +++ +
Sbjct: 5 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGK 64
Query: 1010 QIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHAN 1069
++ N + D W+ L+++ R L + Q +F +
Sbjct: 65 KLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQ--------QFVANVE 116
Query: 1070 AFHQWLTETRTSMM-EGTGSLEQQLEAIKRK----AAEVRSRRSDLKKIEDLGAILEEHL 1124
W+ E T + E G ++ + +K + + + + G L +
Sbjct: 117 EEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKN 176
Query: 1125 ILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQ 1158
GL + L++ + + L++
Sbjct: 177 NHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDE 210
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 168 bits (428), Expect = 1e-47
Identities = 143/214 (66%), Positives = 178/214 (83%)
Query: 511 ANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKD 570
ANKQ+ + +KD DFWL EVE+LL SED GKDLASV NL+KKHQL+EADI AH+DR+KD
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 571 MNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADE 630
+N QADSL+ S FD S +++KR++IN R++RIK++AA R+A+LNE++ LHQFFRD+ DE
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 631 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL 690
ESWIKEKKLLV S+DYGRDLTGVQNL+KKHKRLEAELA+H+PAIQ V +TG+KL D + +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 691 GVPEIEQRLKLLNQAWSELKQLAANRGQKLDESL 724
G EI+QRL W ELKQLAA RGQ+L+ESL
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESL 215
Score = 143 bits (363), Expect = 5e-39
Identities = 69/213 (32%), Positives = 111/213 (52%)
Query: 617 ANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQN 676
AN F I D + W+ E + L+ S+DYG+DL V NL KKH+ LEA++++H+ +++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 677 VQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEE 736
+ + LM S +++ + + +N + +K +AA R KL+ES F +++E
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 737 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNH 796
E+WI EK+ L+S EDYG + VQ L KKH E + + H + G KL +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 797 HADSITQRCQQLQLKLDNLMALATKRKTKLMDN 829
+ I QR Q L LA R +L ++
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 133 bits (335), Expect = 3e-35
Identities = 48/212 (22%), Positives = 99/212 (46%)
Query: 193 YDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAF 252
Q F + +D W++ + L++S++ D+ LL++HQ +I A +
Sbjct: 3 NKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDL 62
Query: 253 DLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAE 312
+ L+ S + + +++DK + + ++ ARR +L++ L F+RD + E
Sbjct: 63 NSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEE 122
Query: 313 NWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYA 372
+W+ ++ +++E+ V+ L KKH+ + + AHE I + +L +
Sbjct: 123 SWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIG 182
Query: 373 AKPIDDKRKQVLDRWRLLKEALIEKRSRLGES 404
+ I + Q +D W+ LK+ + RL ES
Sbjct: 183 KEEIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 130 bits (328), Expect = 3e-34
Identities = 65/215 (30%), Positives = 112/215 (52%)
Query: 86 AHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQ 145
A++ Q F+ + + W+ E + L + D GKDL SV L +KH+ LE D++A D+++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 146 LDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDL 205
L+ A+ LM + Q K++ IN + ++ + A R+ KL +S+ L +F D D
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 206 MSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHY 265
SWI LVSS++ D+TG + L ++H+ E+ A Q G++L
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 266 ASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLE 300
EIQ +L + ++L++ AR +L++ LE
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE 216
Score = 122 bits (308), Expect = 1e-31
Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 1/207 (0%)
Query: 727 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 786
Q+F +++ + W+SE + LL+ EDYG +A+V LLKKH E D S H DR D+ S
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 787 GNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWI 846
+ L+ + + + + + + + ++A R+ KL ++ QF D ESWI
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWI 125
Query: 847 ADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTP 906
+K+ V SE+YGRDL+ VQ L K + +A L A E IQ + +L N
Sbjct: 126 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPA-IQGVLDTGKKLSDDNTIGKE 184
Query: 907 AIVKRHGDVIARWQKLLGDSNARKQRL 933
I +R + W++L + AR QRL
Sbjct: 185 EIQQRLAQFVDHWKELKQLAAARGQRL 211
Score = 122 bits (307), Expect = 2e-31
Identities = 72/213 (33%), Positives = 116/213 (54%), Gaps = 3/213 (1%)
Query: 300 ELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQ 359
+ Q F + + W+S EA L +E+ +V L+KKH+ + I+AHE+++ L
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 360 TLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMEN 419
+ AD L+ + + + DKR+ + R++ +K +R++L ES L QF RD D+ E+
Sbjct: 64 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEES 123
Query: 420 WIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVG 478
WI EK L + E Y +D +Q+ +KH+ EAELAA+ IQ VL G+ L D
Sbjct: 124 WIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD--DNTI 181
Query: 479 SEEAVQARLASIADQWEFLTQKTTEKSLKLKEA 511
+E +Q RLA D W+ L Q + +L+E+
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 118 bits (297), Expect = 4e-30
Identities = 58/212 (27%), Positives = 112/212 (52%), Gaps = 3/212 (1%)
Query: 407 LQQFSRDADEMENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLA 465
Q F+ + + W++E LA+E+ KD A++ + +KHQ EA+++A+ DR++ + +
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 466 MGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLD 525
+L+ V+ + +I +++ + + KL E+++ + + D +
Sbjct: 65 QADSLMTSSAF--DTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEE 122
Query: 526 FWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD 585
W+ E + L++SED G+DL VQNL KKH+ +EA++ AH+ I+ + L D
Sbjct: 123 SWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIG 182
Query: 586 ASSIQEKRQSINERYERIKNLAAHRQARLNEA 617
IQ++ + ++ +K LAA R RL E+
Sbjct: 183 KEEIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 112 bits (282), Expect = 3e-28
Identities = 53/192 (27%), Positives = 106/192 (55%), Gaps = 1/192 (0%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQL 62
+D G+DL V + KK ++D+ A+E RL ++N A LM+ + + +++ +
Sbjct: 26 LASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTS-QVKDKR 84
Query: 63 QDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSV 122
+ +N ++ ++ + A R +L +H + +F RD+D+ + WI+EK +++ D G+DL V
Sbjct: 85 ETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGV 144
Query: 123 QALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKA 182
Q L++KH+ LE +LAA I+ + +T +L + E+ + + + W +L A
Sbjct: 145 QNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLA 204
Query: 183 NTRKEKLLDSYD 194
R ++L +S +
Sbjct: 205 AARGQRLEESLE 216
Score = 86.9 bits (215), Expect = 3e-19
Identities = 39/217 (17%), Positives = 93/217 (42%), Gaps = 9/217 (4%)
Query: 834 QFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTL 893
F + W+++ E + SE+YG+DL++V LL K + +A + A E ++++ +
Sbjct: 7 NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDR-LKDLNSQ 65
Query: 894 KDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKK 953
D L+ S+ T + + + R+Q++ + AR+ +L + F +
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ--------FFRD 117
Query: 954 ASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKS 1013
SW + + ++ + ++ LR+ H + +A L++ + + + +++
Sbjct: 118 MDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD 177
Query: 1014 FNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKE 1050
N + D W+ L+++ R L +
Sbjct: 178 DNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 55.3 bits (133), Expect = 2e-08
Identities = 29/217 (13%), Positives = 70/217 (32%), Gaps = 13/217 (5%)
Query: 950 FAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQ 1009
F F+ W E L + + L + H +A +S+ + + L +
Sbjct: 8 FNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQAD 67
Query: 1010 QIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHAN 1069
+ + + E + ++ ++ + R +L +F + +
Sbjct: 68 SLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKL--------NESHRLHQFFRDMD 119
Query: 1070 AFHQWLTETRTSMMEG-----TGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHL 1124
W+ E + + ++ + KR AE+ + ++ + D G L +
Sbjct: 120 DEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDN 179
Query: 1125 ILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQ 1161
+ + W +L QL LE+ ++
Sbjct: 180 TIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE 216
Score = 52.2 bits (125), Expect = 2e-07
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 2 HAQVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQ 61
+D G DL V+ ++KK +++L A+E + + + +L T +IQ +
Sbjct: 131 LVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDN-TIGKEEIQQR 189
Query: 62 LQDLNQKWTSLQQLTAERATQLGSAHE 88
L W L+QL A R +L + E
Sbjct: 190 LAQFVDHWKELKQLAAARGQRLEESLE 216
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 168 bits (426), Expect = 7e-45
Identities = 44/292 (15%), Positives = 108/292 (36%), Gaps = 18/292 (6%)
Query: 521 VKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLID 580
+ W+ + + + G DLASV+ I H+ + I + ++ +
Sbjct: 11 TSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLR---- 66
Query: 581 SGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLL 640
+ + E YE + + R L + L + + E WI + +
Sbjct: 67 --------EKSAIYQLEEEYENLLKASFERMDHLRQ---LQNIIQATSREIMWINDCEEE 115
Query: 641 VGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLK 700
D+ T + ++ ++L + + +++ ++L+ + +IE +
Sbjct: 116 ELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMD 175
Query: 701 LLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQ 760
L WS + Q+ L E+ Y F + + EA++ Q + + D +Q
Sbjct: 176 TLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQ 235
Query: 761 GL---LKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQ 809
L +K+ + ++ + ++ + K+++ K + D + + L+
Sbjct: 236 HLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILR 287
Score = 153 bits (388), Expect = 7e-40
Identities = 37/301 (12%), Positives = 105/301 (34%), Gaps = 17/301 (5%)
Query: 622 QFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETG 681
++ W+++++ + +G DL V+ H+ + + ++ + ++
Sbjct: 6 FTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADL 65
Query: 682 EKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWIS 741
+ + + L + + L + + R L + Q+ + E WI+
Sbjct: 66 RE------------KSAIYQLEEEYENLLKASFERMDHLRQ---LQNIIQATSREIMWIN 110
Query: 742 EKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSI 801
+ ++ + D+ D + + + V + ++L+ ++ +D I
Sbjct: 111 DCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKI 170
Query: 802 TQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRD 861
LQ + ++ + L +N+AY QF +A E+++ + ++ +
Sbjct: 171 EAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDK 230
Query: 862 LSTVQTLLTKQETFDAGLHAFEHEG--IQNITTLKDQLVASNHDQTPAIVKRHGDVIARW 919
+Q LL + + + +QN+ ++V + + A
Sbjct: 231 NMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRALC 290
Query: 920 Q 920
Sbjct: 291 D 291
Score = 142 bits (360), Expect = 3e-36
Identities = 37/301 (12%), Positives = 100/301 (33%), Gaps = 18/301 (5%)
Query: 86 AHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQ 145
+ + E W++++ ++ G DL SV+ H G+ + ++ +
Sbjct: 1 SGWDEFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDK 60
Query: 146 LDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDL 205
+ + ++ EE+ L + R + L LQ +
Sbjct: 61 IKADLREKSAIY------------QLEEEYENLLKASFERMDHLRQ---LQNIIQATSRE 105
Query: 206 MSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHY 265
+ WIN + ++ T E ++++ + QL+ + H
Sbjct: 106 IMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHP 165
Query: 266 ASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAE 325
AS +I+ + L + + + L + F+ + + E ++ + + +
Sbjct: 166 ASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKK 225
Query: 326 EV---DSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQ 382
+ ++ IK+ E + I ++ ++ L + +++ +K
Sbjct: 226 YPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPII 285
Query: 383 V 383
+
Sbjct: 286 L 286
Score = 137 bits (346), Expect = 2e-34
Identities = 56/497 (11%), Positives = 158/497 (31%), Gaps = 61/497 (12%)
Query: 408 QQFSRDADEMENWIAEKL-QLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAM 466
+ E W+ ++ ++ D A+++ H+ + ++ + A
Sbjct: 5 EFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKA- 63
Query: 467 GQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDF 526
+ ++ + + +++E L + + E+ L++ + I A
Sbjct: 64 -------------DLREKSAIYQLEEEYENLLKASFERMDHLRQL---QNIIQATSREIM 107
Query: 527 WLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDA 586
W+ + E D ++ + + + ++ + + + ++D L+ + +
Sbjct: 108 WINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPAS 167
Query: 587 SSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDY 646
I+ ++ ++ I + L E QFF + E+++K + +
Sbjct: 168 DKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYP 227
Query: 647 GRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAW 706
+Q+L ++ K LE + I + + L++ S V + +
Sbjct: 228 CDKNMPLQHLLEQIKELEK----EREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKP 283
Query: 707 SELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKH 766
L+ L + + + L E W V G V +
Sbjct: 284 IILRALCDYKQDQKIVHKGDECILKDNNERSKW--------YVTGPGGVDMLVPSVG--- 332
Query: 767 DAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKL 826
+I N A ++ + ++ + ++AL + +
Sbjct: 333 ----------------------LIIPPPNPLAVDLSCK---IEQYYEAILALWNQLYINM 367
Query: 827 MDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEG 886
++ M + + + K ++ E+Y + ++ ++ + F E G
Sbjct: 368 KSLVSWHYCMIDIEKIRAMTIAKLKTMRQEDYMKTIADLE---LHYQEFIRNSQGSEMFG 424
Query: 887 IQNITTLKDQLVASNHD 903
+ ++ Q +
Sbjct: 425 DDDKRKIQSQFTDAQKH 441
Score = 134 bits (337), Expect = 2e-33
Identities = 59/481 (12%), Positives = 136/481 (28%), Gaps = 61/481 (12%)
Query: 192 SYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQA 251
S + + + W+ + D+ E + H+ I
Sbjct: 1 SGWDEFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGD------- 53
Query: 252 FDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQA 311
+ QL + A + + + L E E+L KA R L Q LQ + +
Sbjct: 54 ---YRWQLDKIK--ADLREKSAIYQLEEEYENLLKASFERMDHLRQ---LQNIIQATSRE 105
Query: 312 ENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHY 371
W++ E + K N+ + + E+++ L+ +DQL+ H
Sbjct: 106 IMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHP 165
Query: 372 AAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQ-LATE 430
A+ I+ + +W + + L E+ QF +A E ++ + +
Sbjct: 166 ASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKK 225
Query: 431 ESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASI 490
+Q ++ + E E + ++ ++
Sbjct: 226 YPCDKNMPLQHLLEQIKELEKEREK------------------------ILEYKRQVQNL 261
Query: 491 ADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNL 550
++ + + Q + K + + + + +++ + V
Sbjct: 262 VNKSKKIVQLKPRNPDYRSNKPIILRALCDYKQDQKIVHKGDECILKDNNERSKWYVTGP 321
Query: 551 IKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHR 610
LV + + I + YE I L
Sbjct: 322 GGVDMLVPSVGLIIPPPNPL------------------AVDLSCKIEQYYEAILALWNQL 363
Query: 611 QARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASH 670
+ + H DI + K + +DY + + +L+ ++
Sbjct: 364 YINMKSLVSWHYCMIDIEKIRAMTIAKLKTMRQEDYMKTI---ADLELHYQEFIRNSQGS 420
Query: 671 Q 671
+
Sbjct: 421 E 421
Score = 110 bits (277), Expect = 1e-25
Identities = 50/459 (10%), Positives = 129/459 (28%), Gaps = 64/459 (13%)
Query: 4 QVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQ 63
+ G DL VE + + +L ++ A L+ ++ +
Sbjct: 26 DMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIK-------------ADLREKSAIY 72
Query: 64 DLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQ 123
L +++ +L + + ER L + WI + +E D ++
Sbjct: 73 QLEEEYENLLKASFERMDHLRQLQN---IIQATSREIMWINDCEEEELLYDWSDKNTNIA 129
Query: 124 ALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKAN 183
Q L ++ +L + +++L+ +++ A + +W+ +
Sbjct: 130 QKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITK 189
Query: 184 TRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEH---RT 240
L ++ +F + + +++ + + + + LLE+ +E R
Sbjct: 190 CIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKERE 249
Query: 241 EIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLE 300
+I Q ++++Q + + + + A D + + + + E
Sbjct: 250 KILEYKRQVQNLVNKSKKIVQL-KPRNPDYRSNKPIILRALCD----YKQDQKIVHKGDE 304
Query: 301 LQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQT 360
L +D + W V ++ + KI
Sbjct: 305 CIL--KDNNERSKW--------YVTGPGGVDMLVPSVGLIIPPPNPLAVDLSCKIEQYY- 353
Query: 361 LADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENW 420
+ + + + D +++
Sbjct: 354 ---------------------------EAILALWNQLYINMKSLVSWHYCMIDIEKIRAM 386
Query: 421 IAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADR 459
KL+ +E Y I +Q F +
Sbjct: 387 TIAKLKTMRQEDYM--KTIADLELHYQEFIRNSQGSEMF 423
Score = 109 bits (273), Expect = 4e-25
Identities = 52/392 (13%), Positives = 118/392 (30%), Gaps = 30/392 (7%)
Query: 727 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 786
+ E W+ +++ + + +G +A+V+ + H +R + I +
Sbjct: 5 EFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKAD 64
Query: 787 GNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWI 846
+ QL+ + +NL+ + +R L + WI
Sbjct: 65 LREK------------SAIYQLEEEYENLLKASFERMDHLRQ---LQNIIQATSREIMWI 109
Query: 847 ADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTP 906
D E ++ + + + L E E + + DQLV + H +
Sbjct: 110 NDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKE-LNKLKQESDQLVLNQHPASD 168
Query: 907 AIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNSWFENAEE 966
I + +W +L + L F+ F ++A S ++ + ++
Sbjct: 169 KIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQ--------FFEEAQSTEAYLKGLQD 220
Query: 967 DLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKSF------NVGPNP 1020
+ C+ ++ L E + + + L + K N
Sbjct: 221 SIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRS 280
Query: 1021 YTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRT 1080
+ AL D ++ + + K + L R + +
Sbjct: 281 NKPIILRALCDYKQDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPNP 340
Query: 1081 SMMEGTGSLEQQLEAIKRKAAEVRSRRSDLKK 1112
++ + +EQ EAI ++ L
Sbjct: 341 LAVDLSCKIEQYYEAILALWNQLYINMKSLVS 372
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 159 bits (403), Expect = 9e-45
Identities = 63/183 (34%), Positives = 99/183 (54%)
Query: 192 SYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQA 251
+ D RF S RDL+SW+ S++ + + E DV+ E L++ HQ EI+ R+ F A
Sbjct: 3 TADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSA 62
Query: 252 FDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQA 311
G+ LLQ H AS EI++KL + R+++ + W AR +L LE+ F RD A
Sbjct: 63 CLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVA 122
Query: 312 ENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHY 371
E W+ A+E +L + + D+VE LIK+HE F+K+ + E+ AL+ +
Sbjct: 123 EAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELKERQI 182
Query: 372 AAK 374
A +
Sbjct: 183 AER 185
Score = 128 bits (323), Expect = 5e-34
Identities = 41/179 (22%), Positives = 81/179 (45%)
Query: 616 EANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQ 675
+FF D SW++ + + + RD++ V+ L K H+ + AE+ +
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 676 NVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEE 735
E GE L+ + EI ++L+ + E+ + R ++L L F
Sbjct: 62 ACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASV 121
Query: 736 EEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAK 794
EAW+ ++ L+ D+G T+ +V+ L+K+H+AFE + +R A + ++ +
Sbjct: 122 AEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELKER 180
Score = 120 bits (301), Expect = 4e-31
Identities = 38/177 (21%), Positives = 79/177 (44%)
Query: 510 EANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIK 569
+ + + +DL W+ + + +++ +D++SV+ L+K HQ + A+I+
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 570 DMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIAD 629
+SL+ + I+EK Q + R + + R RL + QF RD +
Sbjct: 62 ACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASV 121
Query: 630 EESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMD 686
E+W+ ++ + S D+G + V+ L K+H+ E AS +++ +
Sbjct: 122 AEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELK 178
Score = 113 bits (284), Expect = 9e-29
Identities = 33/184 (17%), Positives = 73/184 (39%)
Query: 84 GSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKI 143
GS + RF + W++ + + +D+ SV+ L + H+G+ ++
Sbjct: 1 GSTADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNF 60
Query: 144 RQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYR 203
E L+Q + +E+ K +++ ++ K R E+L ++ +F D
Sbjct: 61 SACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDAS 120
Query: 204 DLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSG 263
+W+ + ++S + + V E L++RH+ + F A + L+
Sbjct: 121 VAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELKER 180
Query: 264 HYAS 267
A
Sbjct: 181 QIAE 184
Score = 110 bits (277), Expect = 6e-28
Identities = 27/183 (14%), Positives = 72/183 (39%), Gaps = 1/183 (0%)
Query: 722 ESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCA 781
+ F + + +W+ + + ++ +++V+ L+K H + +
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 782 DICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADV 841
G L++ ++ ++ I ++ QQ+ + + R +L QF A V
Sbjct: 62 ACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASV 121
Query: 842 VESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASN 901
E+W+ +E ++ S ++G + +V+ L+ + E F+ ++ E + +
Sbjct: 122 AEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWA-ERFAALEKPTTLELKER 180
Query: 902 HDQ 904
Sbjct: 181 QIA 183
Score = 108 bits (272), Expect = 3e-27
Identities = 35/185 (18%), Positives = 81/185 (43%), Gaps = 3/185 (1%)
Query: 402 GESQTLQQFSRDADEMENWIAEKL-QLATEESYKDPANIQSKHQKHQAFEAELAANADRI 460
G + +F A ++ +W+ + Q+ T+E +D ++++ + HQ AE+ +
Sbjct: 1 GSTADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNF 60
Query: 461 QSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAA 520
+ L +G++L+ ++ E ++ +L + + + + +K + +L+ + +
Sbjct: 61 SACLELGESLLQRQHQASEE--IREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRD 118
Query: 521 VKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLID 580
+ WL E L S D G + SV+ LIK+H+ E + +R + +
Sbjct: 119 ASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELK 178
Query: 581 SGQFD 585
Q
Sbjct: 179 ERQIA 183
Score = 107 bits (268), Expect = 1e-26
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 1/180 (0%)
Query: 297 QCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIG 356
+ F+ +WM + + +E +VE L+K H+ + I +
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 357 ALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADE 416
A L + L+ H A++ I +K +QV+ R + + E + RL + QFSRDA
Sbjct: 62 ACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASV 121
Query: 417 MENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQ 475
E W+ + LA+ + +++ ++H+AFE A+ A+R ++ + +RQ
Sbjct: 122 AEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELKERQ 181
Score = 95.4 bits (237), Expect = 2e-22
Identities = 30/153 (19%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQL 62
+ Q+ D+ VE++ K ++++ + E+ L+ +A+ +I+ +L
Sbjct: 27 IETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQ-HQASEEIREKL 85
Query: 63 QDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSV 122
Q + + + + R +L EV +F RD + W+ ++ L + D G + SV
Sbjct: 86 QQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFGHTVDSV 145
Query: 123 QALQRKHEGLERDLAALGDKIRQLDETANRLMQ 155
+ L ++HE E+ A+ ++ L++ ++
Sbjct: 146 EKLIKRHEAFEKSTASWAERFAALEKPTTLELK 178
Score = 76.1 bits (187), Expect = 8e-16
Identities = 36/182 (19%), Positives = 74/182 (40%), Gaps = 9/182 (4%)
Query: 834 QFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTL 893
+F A + SW+ ++++E RD+S+V+ L+ + +A + L
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKN-FSACLEL 66
Query: 894 KDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKK 953
+ L+ H + I ++ V++R +++ AR +RL + E + F++
Sbjct: 67 GESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQ--------FSRD 118
Query: 954 ASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKS 1013
AS +W E L ++++ + L + H F+ S +S F AL
Sbjct: 119 ASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELK 178
Query: 1014 FN 1015
Sbjct: 179 ER 180
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 159 bits (403), Expect = 3e-44
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 9/230 (3%)
Query: 493 QWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIK 552
Q K++ L E + V+DL W+ E++ L + G DL SV++ ++
Sbjct: 4 QIRKPLLKSSLLDQNLTEEEV---NMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLE 60
Query: 553 KHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQA 612
H+ V I+ + +K+ + S +K + +Y ++ N + +++
Sbjct: 61 NHKNVHRAIEEFESSLKEAKISEIQMTAP---LKLSYTDKLHRLESQYAKLLNTSRNQER 117
Query: 613 RLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQP 672
L+ LH F +E W+ EK+ + D+ + V K H L EL +
Sbjct: 118 HLDT---LHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEE 174
Query: 673 AIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDE 722
+I+ VQE E+L+ ++ IE + WS + QL Q + E
Sbjct: 175 SIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQE 224
Score = 135 bits (341), Expect = 6e-36
Identities = 28/230 (12%), Positives = 86/230 (37%), Gaps = 6/230 (2%)
Query: 599 RYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKK 658
+ +I+ + + D +W+ E ++ + ++G DL V++ +
Sbjct: 1 KLMQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLE 60
Query: 659 KHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQ 718
HK + + + +++ + + ++ + +L L +++L + N+ +
Sbjct: 61 NHKNVHRAIEEFESSLKEAKISEIQM---TAPLKLSYTDKLHRLESQYAKLLNTSRNQER 117
Query: 719 KLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRD 778
LD +F+ + E W++EK++ D+ + ++V H + +
Sbjct: 118 HLDT---LHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEE 174
Query: 779 RCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMD 828
+ +L+ + +I +Q + ++ L + + +
Sbjct: 175 SIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQE 224
Score = 112 bits (281), Expect = 6e-28
Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 6/230 (2%)
Query: 174 EWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLE 233
+ Q+ + + + + +DL++W++ M + E +D+ E+ LE
Sbjct: 1 KLMQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLE 60
Query: 234 RHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRM 293
H+ I+ + + + Q+ DKL L L +
Sbjct: 61 NHKNVHRAIEEFESSLKEAKISEIQMTAPLKL---SYTDKLHRLESQYAKLLNTSRNQER 117
Query: 294 QLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEE 353
LD L F W++ +E A + + +V H + + + EE
Sbjct: 118 HLDT---LHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEE 174
Query: 354 KIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGE 403
I A+Q +A+QL+ +H A I+ R + +W + + + E
Sbjct: 175 SIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQE 224
Score = 109 bits (274), Expect = 6e-27
Identities = 30/230 (13%), Positives = 84/230 (36%), Gaps = 6/230 (2%)
Query: 68 KWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQR 127
K +++ + + + E + + V + +W+ E L+ + G DL SV++
Sbjct: 1 KLMQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLE 60
Query: 128 KHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKE 187
H+ + R + +++ + ++ + K + ++ +L + ++
Sbjct: 61 NHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTD---KLHRLESQYAKLLNTSRNQER 117
Query: 188 KLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTG 247
L L F++ + + W+N + + + + H E E++ +
Sbjct: 118 HL---DTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEE 174
Query: 248 TFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQ 297
+ +A +QLL H A + I+ + + + + +
Sbjct: 175 SIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQE 224
Score = 106 bits (267), Expect = 5e-26
Identities = 33/228 (14%), Positives = 79/228 (34%), Gaps = 7/228 (3%)
Query: 706 WSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKK 765
++++ + + V++ W+ E Q L ++G + +V+ L+
Sbjct: 2 LMQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLEN 61
Query: 766 HDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTK 825
H + + ++ S T + +L+ + L+ + ++
Sbjct: 62 HKNVHRAIEEFESSLKEAKISEIQMTAPL---KLSYTDKLHRLESQYAKLLNTSRNQERH 118
Query: 826 LMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHE 885
L F+ +A W+ +KE + ++ S+V + L E E
Sbjct: 119 L---DTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKE-E 174
Query: 886 GIQNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRL 933
I+ + + +QL+ NH I + +W +L +Q +
Sbjct: 175 SIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHI 222
Score = 105 bits (264), Expect = 1e-25
Identities = 39/228 (17%), Positives = 88/228 (38%), Gaps = 9/228 (3%)
Query: 284 LEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHED 343
+ K + + E ++ + + NW+ + L+ E S +VE+ ++ H++
Sbjct: 5 IRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKN 64
Query: 344 FDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGE 403
+AI E + + Q+ A + DK ++ ++ L + L
Sbjct: 65 VHRAIEEFESSLKEAKISEIQMTAPLKLS---YTDKLHRLESQYAKLLNTSRNQERHL-- 119
Query: 404 SQTLQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQS 462
TL F A W+ EK + + + +++ K H EL + I++
Sbjct: 120 -DTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKA 178
Query: 463 VLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKE 510
V + + L+ + + ++A A++ QW ++ Q ++E
Sbjct: 179 VQEIAEQLLLENH--PARLTIEAYRAAMQTQWSWILQLCQCVEQHIQE 224
Score = 105 bits (263), Expect = 2e-25
Identities = 31/232 (13%), Positives = 81/232 (34%), Gaps = 9/232 (3%)
Query: 386 RWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKL-QLATEESYKDPANIQSKHQ 444
+ +++ L++ + + ++ NW+ E QL E D +++S +
Sbjct: 1 KLMQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLE 60
Query: 445 KHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEK 504
H+ + ++ + + + +L + Q+ L + +
Sbjct: 61 NHKNVHRAIEEFESSLKEAKISEIQMTAP-----LKLSYTDKLHRLESQYAKLLNTSRNQ 115
Query: 505 SLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAH 564
L ++ + WL E E + D + +SV H + +++
Sbjct: 116 ERHLDTL---HNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQK 172
Query: 565 DDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNE 616
++ IK + A+ L+ +I+ R ++ ++ I L + + E
Sbjct: 173 EESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQE 224
Score = 96.2 bits (239), Expect = 2e-22
Identities = 33/186 (17%), Positives = 68/186 (36%), Gaps = 7/186 (3%)
Query: 6 QDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDL 65
+ G DL VE + + ++ E L E +Q+ + L +L L
Sbjct: 46 TEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTA----PLKLSYTDKLHRL 101
Query: 66 NQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQAL 125
++ L + + L + H F W+ EK+E+ D + SV
Sbjct: 102 ESQYAKLLNTSRNQERHLDTLHN---FVTRATNELIWLNEKEESEVAYDWSERNSSVARK 158
Query: 126 QRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTR 185
+ H L R+L + I+ + E A +L+ + A + + +W+ +
Sbjct: 159 KSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCV 218
Query: 186 KEKLLD 191
++ + +
Sbjct: 219 EQHIQE 224
Score = 66.5 bits (162), Expect = 3e-12
Identities = 30/237 (12%), Positives = 77/237 (32%), Gaps = 15/237 (6%)
Query: 811 KLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLT 870
KL + K + + M + +W+ + + + E+G DL +V++ L
Sbjct: 1 KLMQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLE 60
Query: 871 KQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARK 930
+ + FE ++ K + + + + +++ KLL S ++
Sbjct: 61 NHKNVHRAIEEFE----SSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQE 116
Query: 931 QRLLRMQEQFRQIEDLYLTFAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQF 990
+ L + + + W EE + + HA+
Sbjct: 117 RHLDTLHNFVTRATNEL-----------IWLNEKEESEVAYDWSERNSSVARKKSYHAEL 165
Query: 991 QASLSSAQADFEALAALDQQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIEL 1047
L + +A+ + +Q+ N A++ W + ++ + + +
Sbjct: 166 MRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHI 222
Score = 41.1 bits (96), Expect = 0.001
Identities = 33/247 (13%), Positives = 77/247 (31%), Gaps = 30/247 (12%)
Query: 917 ARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNSWFENAEEDLTDPVRCNS 976
+ +K L S+ Q L + + ++DL +W + + L +
Sbjct: 3 MQIRKPLLKSSLLDQNLTEEEVNMKFVQDL-----------LNWVDEMQVQLDRTEWGSD 51
Query: 977 IEEIRALREAHAQFQASLSSAQADFEALAALDQQIKSFNVGPNPYTWFTMEALEDTWRNL 1036
+ + + E H ++ ++ + + Q T L
Sbjct: 52 LPSVESHLENHKNVHRAIEEFESSLKEAKISEIQ-------------MTAPLKLSYTDKL 98
Query: 1037 QKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMM-----EGTGSLEQ 1091
++ + L ++ D L F A WL E S + E S+ +
Sbjct: 99 HRLESQYAKLLNTSRNQERHLDTLHN-FVTRATNELIWLNEKEESEVAYDWSERNSSVAR 157
Query: 1092 QLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMR 1151
+ E+ + +K ++++ L E + QW + QL
Sbjct: 158 KKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQC 217
Query: 1152 MQHNLEQ 1158
++ ++++
Sbjct: 218 VEQHIQE 224
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 158 bits (401), Expect = 4e-44
Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 1/210 (0%)
Query: 196 QRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLF 255
Q FL D D +W++ V+S+++ + AE LL++H + EID ++Q
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 256 GQQLLQSGHYASV-EIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENW 314
G++++Q + +L L + L + W +R L QCL Q F +D +QAE
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 315 MSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAK 374
+S +E L E + EA I+K EDF ++ + +K+ + ++L+A + +
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD 182
Query: 375 PIDDKRKQVLDRWRLLKEALIEKRSRLGES 404
I +K + + DR R E E L ++
Sbjct: 183 KIKEKVQLIEDRHRKNNEKAQEASVLLRDN 212
Score = 151 bits (384), Expect = 7e-42
Identities = 52/210 (24%), Positives = 104/210 (49%), Gaps = 1/210 (0%)
Query: 621 HQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQET 680
F +D+ D ++W+ + V S+D L + L ++H ++ E+ HQ + Q V+E+
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 681 GEKLMDVS-NLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAW 739
GEK++ + + QRL+ L+ W L ++ +R L + L +Q F ++ EA
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 740 ISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHAD 799
+S ++ L+ + D++ A + ++K + F +RD+ +GNKL+ N ++D
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD 182
Query: 800 SITQRCQQLQLKLDNLMALATKRKTKLMDN 829
I ++ Q ++ + A + L DN
Sbjct: 183 KIKEKVQLIEDRHRKNNEKAQEASVLLRDN 212
Score = 131 bits (331), Expect = 1e-34
Identities = 30/212 (14%), Positives = 92/212 (43%), Gaps = 1/212 (0%)
Query: 514 QRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNG 573
++ ++ + D WL + + SED + L + L+++H ++ +I H D + +
Sbjct: 2 EQAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKE 61
Query: 574 QADSLID-SGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEES 632
+ +I + + ++ + ++ ++ + + R L + +F +D E+
Sbjct: 62 SGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEA 121
Query: 633 WIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGV 692
+ ++ + + L + +K + + +++ + + ++G KL+ NL
Sbjct: 122 ILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYS 181
Query: 693 PEIEQRLKLLNQAWSELKQLAANRGQKLDESL 724
+I+++++L+ + + A L ++L
Sbjct: 182 DKIKEKVQLIEDRHRKNNEKAQEASVLLRDNL 213
Score = 124 bits (313), Expect = 2e-32
Identities = 34/212 (16%), Positives = 92/212 (43%), Gaps = 1/212 (0%)
Query: 90 QRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDET 149
Q F +D+D+ + W+ +A+ + D+ + L + L ++H G++ ++ D +++ E+
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 150 ANRLMQTHPETAEQTYAKQ-KEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSW 208
+++Q + ++ + ++ W L +R L Q F D + +
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 209 INSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASV 268
+++ ++ E + + AEA + + ++ ++ + G +L+ G+ S
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD 182
Query: 269 EIQDKLGNLAEAREDLEKAWIARRMQLDQCLE 300
+I++K+ + + + + L LE
Sbjct: 183 KIKEKVQLIEDRHRKNNEKAQEASVLLRDNLE 214
Score = 121 bits (306), Expect = 2e-31
Identities = 39/211 (18%), Positives = 83/211 (39%), Gaps = 2/211 (0%)
Query: 408 QQFSRDADEMENWIAEKL-QLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAM 466
Q F +D D+ + W++ +A+E+ + + Q+H + E+ + D Q V
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 467 GQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDF 526
G+ +I + + RL + W+ L + +S L + + + K +
Sbjct: 63 GEKVIQGQT-DPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEA 121
Query: 527 WLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDA 586
L E L + L + + I+K + ++ + D++ + L+ G +
Sbjct: 122 ILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYS 181
Query: 587 SSIQEKRQSINERYERIKNLAAHRQARLNEA 617
I+EK Q I +R+ + A L +
Sbjct: 182 DKIKEKVQLIEDRHRKNNEKAQEASVLLRDN 212
Score = 116 bits (291), Expect = 2e-29
Identities = 31/192 (16%), Positives = 78/192 (40%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQL 62
+D+ E L + E + ++ + ++ ++ + E +++ L + +L
Sbjct: 23 VASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRL 82
Query: 63 QDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSV 122
+ L+ W +L ++ R+ L Q F +D + + + ++ L + + L +
Sbjct: 83 EGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAA 142
Query: 123 QALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKA 182
+A RK E + DK+ ++ N+L+ +++ K + I + + KA
Sbjct: 143 EAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKA 202
Query: 183 NTRKEKLLDSYD 194
L D+ +
Sbjct: 203 QEASVLLRDNLE 214
Score = 110 bits (277), Expect = 1e-27
Identities = 36/212 (16%), Positives = 88/212 (41%), Gaps = 4/212 (1%)
Query: 302 QLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTL 361
Q F +D + + W+S + + +E++ E L+++H I+ H++ ++
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 362 ADQLIAADHYAAKP-IDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENW 420
+++I + + + + W L + L + Q+F +DA + E
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 421 IAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGS 479
++ + LA E ++ +K + F + N D++ S + G L+ +
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVA--EGNLY 180
Query: 480 EEAVQARLASIADQWEFLTQKTTEKSLKLKEA 511
+ ++ ++ I D+ +K E S+ L++
Sbjct: 181 SDKIKEKVQLIEDRHRKNNEKAQEASVLLRDN 212
Score = 107 bits (269), Expect = 2e-26
Identities = 40/208 (19%), Positives = 88/208 (42%), Gaps = 2/208 (0%)
Query: 727 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 786
Q FL +++ +AW+S Q+ ++ ED +++ + LL++H + + H+D + +
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 787 GNKLIEAKNHHA-DSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESW 845
G K+I+ + + QR + L D L + R L + +F A E+
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 846 IADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQT 905
++++E + E L + + K E F + + + + ++LVA + +
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNR-DKVLSPVDSGNKLVAEGNLYS 181
Query: 906 PAIVKRHGDVIARWQKLLGDSNARKQRL 933
I ++ + R +K + L
Sbjct: 182 DKIKEKVQLIEDRHRKNNEKAQEASVLL 209
Score = 50.3 bits (120), Expect = 1e-06
Identities = 31/218 (14%), Positives = 68/218 (31%), Gaps = 14/218 (6%)
Query: 950 FAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQ 1009
F + F +W ++ + S+ E L + HA + + Q ++ + +
Sbjct: 5 FLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 64
Query: 1010 QIKSFNVGPN-PYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHA 1068
++ P +E L+ W L ++ + R L +EF K A
Sbjct: 65 KVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTL--------AQCLGFQEFQKDA 116
Query: 1069 NAFHQWLTETRTSM-MEGTGSLEQQLEAIKRK----AAEVRSRRSDLKKIEDLGAILEEH 1123
L+ ++ + EA RK + + R + D G L
Sbjct: 117 KQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAE 176
Query: 1124 LILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQ 1161
L + + + + + ++ L ++
Sbjct: 177 GNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRDNLE 214
Score = 31.8 bits (72), Expect = 0.98
Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 14/114 (12%)
Query: 1060 LRKEFAKHANAFHQWLTETRTSMMEGT-----GSLEQQLEAIKRKAAEVRSRRSDLKKIE 1114
+ + F + + F WL+ T+ ++ EQ L+ E+ + ++++
Sbjct: 1 MEQAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVK 60
Query: 1115 DLGAILEEHLILDNRYTEHSTVG-----LAQQWDQLDQLGMRMQHNLEQQIQAR 1163
+ G E +I E+ +G L WD L ++ H L Q + +
Sbjct: 61 ESG----EKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQ 110
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 147 bits (372), Expect = 3e-40
Identities = 45/210 (21%), Positives = 83/210 (39%), Gaps = 6/210 (2%)
Query: 514 QRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNG 573
+ + + ++DL W+ E + + + G DL SV+ + H+ + I+ +I+
Sbjct: 7 EDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARS 66
Query: 574 QADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESW 633
GQ ++ R + + L +ARL +LH F E W
Sbjct: 67 D------EGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKELMW 120
Query: 634 IKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVP 693
+ EK+ D+ T + K+ + L EL + I+ +Q G++L+ + P
Sbjct: 121 LNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARP 180
Query: 694 EIEQRLKLLNQAWSELKQLAANRGQKLDES 723
+E L WS + QL L E+
Sbjct: 181 TVESFQAALQTQWSWMLQLCCCIEAHLKEN 210
Score = 132 bits (332), Expect = 6e-35
Identities = 35/208 (16%), Positives = 83/208 (39%), Gaps = 6/208 (2%)
Query: 622 QFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETG 681
R + D +W++E + V ++G DL V+ H+ L + + I+ +
Sbjct: 9 STLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDE 68
Query: 682 EKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWIS 741
+L L L+ +++L + R + L+ F+A +E W++
Sbjct: 69 GQLSPA---TRGAYRDCLGRLDLQYAKLLNSSKARLRSLES---LHSFVAAATKELMWLN 122
Query: 742 EKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSI 801
EK++ D+ D + + + A + + + ++ +AG++L+ + ++
Sbjct: 123 EKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTV 182
Query: 802 TQRCQQLQLKLDNLMALATKRKTKLMDN 829
LQ + ++ L + L +N
Sbjct: 183 ESFQAALQTQWSWMLQLCCCIEAHLKEN 210
Score = 115 bits (288), Expect = 4e-29
Identities = 41/209 (19%), Positives = 76/209 (36%), Gaps = 6/209 (2%)
Query: 196 QRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLF 255
L +DL++W+ V E D+ EA L H+ I+ +
Sbjct: 8 DSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSD 67
Query: 256 GQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWM 315
QL + +D LG L L + AR L+ L F + W+
Sbjct: 68 EGQLSPATRG---AYRDCLGRLDLQYAKLLNSSKARLRSLES---LHSFVAAATKELMWL 121
Query: 316 SAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKP 375
+ +E + + N+ A + + + + E+KI LQ D+L+ DH A
Sbjct: 122 NEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPT 181
Query: 376 IDDKRKQVLDRWRLLKEALIEKRSRLGES 404
++ + + +W + + + L E+
Sbjct: 182 VESFQAALQTQWSWMLQLCCCIEAHLKEN 210
Score = 104 bits (260), Expect = 2e-25
Identities = 33/208 (15%), Positives = 69/208 (33%), Gaps = 7/208 (3%)
Query: 726 YQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICS 785
L +++ AW+ E Q + ++G + +V+ L H R + S
Sbjct: 7 EDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARS 66
Query: 786 AGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESW 845
+L A + +L L+ L+ + R L + F+ A W
Sbjct: 67 DEGQLSPAT---RGAYRDCLGRLDLQYAKLLNSSKARLRSLE---SLHSFVAAATKELMW 120
Query: 846 IADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQT 905
+ +KE ++ + + L E + I+ + D+L+ +H
Sbjct: 121 LNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKK-IKELQNAGDRLLREDHPAR 179
Query: 906 PAIVKRHGDVIARWQKLLGDSNARKQRL 933
P + + +W +L + L
Sbjct: 180 PTVESFQAALQTQWSWMLQLCCCIEAHL 207
Score = 104 bits (260), Expect = 3e-25
Identities = 33/208 (15%), Positives = 70/208 (33%), Gaps = 6/208 (2%)
Query: 90 QRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDET 149
R + + W++E ++ + G DL SV+A H GL + + KI +
Sbjct: 8 DSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSD 67
Query: 150 ANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSWI 209
+L ++ ++ +L + R L L F++ + W+
Sbjct: 68 EGQLSPATRGAYRD---CLGRLDLQYAKLLNSSKARLRSLES---LHSFVAAATKELMWL 121
Query: 210 NSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVE 269
N + ++ T A E + E++ + + G +LL+ H A
Sbjct: 122 NEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPT 181
Query: 270 IQDKLGNLAEAREDLEKAWIARRMQLDQ 297
++ L + + L +
Sbjct: 182 VESFQAALQTQWSWMLQLCCCIEAHLKE 209
Score = 103 bits (257), Expect = 6e-25
Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 14/222 (6%)
Query: 290 ARRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAIN 349
M+L+ R + W+ + ++ E +VEA + H ++I
Sbjct: 1 GSHMELED-----STLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIE 55
Query: 350 AHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQ 409
KI ++ QL A A + D ++ ++ L + ++RL ++L
Sbjct: 56 EFRAKIERARSDEGQLSPATRGAYR---DCLGRLDLQYAKLLNS---SKARLRSLESLHS 109
Query: 410 FSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQ 468
F A + W+ EK + + N+ +K + + A EL +I+ + G
Sbjct: 110 FVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGD 169
Query: 469 NLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKE 510
L+ + + V++ A++ QW ++ Q LKE
Sbjct: 170 RLLREDH--PARPTVESFQAALQTQWSWMLQLCCCIEAHLKE 209
Score = 102 bits (256), Expect = 9e-25
Identities = 27/213 (12%), Positives = 75/213 (35%), Gaps = 9/213 (4%)
Query: 405 QTLQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQSV 463
+ R ++ W+ E + D +++++ H+ + +I+
Sbjct: 5 ELEDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERA 64
Query: 464 LAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKD 523
+ L + A + L + Q+ L + + L+ +++AA
Sbjct: 65 RSDEGQLSPATR-----GAYRDCLGRLDLQYAKLLNSSKAR---LRSLESLHSFVAAATK 116
Query: 524 LDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQ 583
WL E E D ++ + + + +++ + +IK++ D L+
Sbjct: 117 ELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDH 176
Query: 584 FDASSIQEKRQSINERYERIKNLAAHRQARLNE 616
+++ + ++ ++ + L +A L E
Sbjct: 177 PARPTVESFQAALQTQWSWMLQLCCCIEAHLKE 209
Score = 100 bits (249), Expect = 7e-24
Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 7/187 (3%)
Query: 6 QDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDL 65
+ G DL VE ++ ++ QL + L L
Sbjct: 31 AEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSP----ATRGAYRDCLGRL 86
Query: 66 NQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQAL 125
+ ++ L + R L S H F + W+ EK+E D ++ A
Sbjct: 87 DLQYAKLLNSSKARLRSLESLHS---FVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAK 143
Query: 126 QRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTR 185
+ + L R+L KI++L +RL++ + Q + +W+ +
Sbjct: 144 KESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCI 203
Query: 186 KEKLLDS 192
+ L ++
Sbjct: 204 EAHLKEN 210
Score = 64.6 bits (157), Expect = 1e-11
Identities = 33/206 (16%), Positives = 68/206 (33%), Gaps = 15/206 (7%)
Query: 842 VESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASN 901
+ +W+ + + V E+G DL +V+ L + F + I + +
Sbjct: 17 LLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAK----IERARSDEGQLS 72
Query: 902 HDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNSWF 961
A G + ++ KLL S AR + L + F A+ W
Sbjct: 73 PATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHS-----------FVAAATKELMWL 121
Query: 962 ENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKSFNVGPNPY 1021
EE+ + + A +E+++ L + + L ++ + P
Sbjct: 122 NEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPT 181
Query: 1022 TWFTMEALEDTWRNLQKIIKERDIEL 1047
AL+ W + ++ + L
Sbjct: 182 VESFQAALQTQWSWMLQLCCCIEAHL 207
Score = 38.8 bits (90), Expect = 0.006
Identities = 30/220 (13%), Positives = 68/220 (30%), Gaps = 19/220 (8%)
Query: 944 EDLYLTFAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEA 1003
+L + + +W E + + + + A +H S+ +A E
Sbjct: 4 MELEDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIER 63
Query: 1004 LAALDQQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKE 1063
+ + Q + L ++ + L R ++L
Sbjct: 64 ARSDEGQ-------------LSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHS- 109
Query: 1064 FAKHANAFHQWLTETRTSMM-----EGTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGA 1118
F A WL E + + ++ + E+ E+ + +K++++ G
Sbjct: 110 FVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGD 169
Query: 1119 ILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQ 1158
L E L QW + QL ++ +L++
Sbjct: 170 RLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKE 209
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 146 bits (370), Expect = 4e-39
Identities = 44/225 (19%), Positives = 84/225 (37%), Gaps = 6/225 (2%)
Query: 612 ARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQ 671
+ + +LH F E W+ EK+ D+ T + K+ + L EL +
Sbjct: 2 SHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKE 61
Query: 672 PAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLA 731
I+ +Q G++L+ + P +E L WS + QL L E+ Y F +
Sbjct: 62 KKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFS 121
Query: 732 KVEEEEAWISEKQQLL---SVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGN 788
V E E + + Q+ L D T+ ++ LL+ + + ++ + +
Sbjct: 122 DVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAK 181
Query: 789 KLIEAKNHHADSITQRCQQLQLKLDNLMALATKRK---TKLMDNS 830
+++ K H + L D T K +L+ +
Sbjct: 182 AVVQLKPRHPAHPMRGRLPLLAVCDYKQVEVTVHKGDECQLVGPA 226
Score = 115 bits (290), Expect = 2e-28
Identities = 29/206 (14%), Positives = 79/206 (38%), Gaps = 4/206 (1%)
Query: 717 GQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVH 776
G + + F+A +E W++EK++ D+ D + + + A + +
Sbjct: 1 GSHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELK 60
Query: 777 RDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFM 836
+ ++ +AG++L+ + ++ LQ + ++ L + L +N+AY QF
Sbjct: 61 EKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFF 120
Query: 837 WKADVVESWIADKETHVK---SEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTL 893
E + + ++ S + ++ ++ LL + L+ ++ + +
Sbjct: 121 SDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGH-LSGLAKR 179
Query: 894 KDQLVASNHDQTPAIVKRHGDVIARW 919
+V ++ ++A
Sbjct: 180 AKAVVQLKPRHPAHPMRGRLPLLAVC 205
Score = 114 bits (285), Expect = 7e-28
Identities = 25/195 (12%), Positives = 78/195 (40%), Gaps = 3/195 (1%)
Query: 507 KLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDD 566
++ +++AA WL E E D ++ + + + +++ +
Sbjct: 3 HMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEK 62
Query: 567 RIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRD 626
+IK++ D L+ +++ + ++ ++ + L +A L E QFF D
Sbjct: 63 KIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSD 122
Query: 627 IADEESWIKEKKLLVG---SDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEK 683
+ + E +++ + + S D +T +++L + + + +L ++ + + + +
Sbjct: 123 VREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKA 182
Query: 684 LMDVSNLGVPEIEQR 698
++ + +
Sbjct: 183 VVQLKPRHPAHPMRG 197
Score = 113 bits (284), Expect = 1e-27
Identities = 27/186 (14%), Positives = 66/186 (35%), Gaps = 4/186 (2%)
Query: 294 QLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEE 353
+ L F + W++ +E + + N+ A + + + + E+
Sbjct: 3 HMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEK 62
Query: 354 KIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRD 413
KI LQ D+L+ DH A ++ + + +W + + + L E+ QF D
Sbjct: 63 KIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSD 122
Query: 414 ADEMENWIAEKL----QLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQN 469
E E + + + + + ++ Q Q + +L + + +
Sbjct: 123 VREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKA 182
Query: 470 LIDKRQ 475
++ +
Sbjct: 183 VVQLKP 188
Score = 112 bits (280), Expect = 3e-27
Identities = 27/200 (13%), Positives = 65/200 (32%), Gaps = 3/200 (1%)
Query: 187 EKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDART 246
+ L F++ + W+N + ++ T A E + E++ +
Sbjct: 2 SHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKE 61
Query: 247 GTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYR 306
+ G +LL+ H A ++ L + + L + F+
Sbjct: 62 KKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFS 121
Query: 307 DCEQAENWMSAREAFLNA---EEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLAD 363
D +AE + + L + + +E L++ +D + +N ++ + L A
Sbjct: 122 DVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAK 181
Query: 364 QLIAADHYAAKPIDDKRKQV 383
++ R +
Sbjct: 182 AVVQLKPRHPAHPMRGRLPL 201
Score = 108 bits (271), Expect = 6e-26
Identities = 32/206 (15%), Positives = 80/206 (38%), Gaps = 6/206 (2%)
Query: 399 SRLGESQTLQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANA 457
S + ++L F A + W+ EK + + N+ +K + + A EL
Sbjct: 2 SHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKE 61
Query: 458 DRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTY 517
+I+ + G L+ + + V++ A++ QW ++ Q LKE +
Sbjct: 62 KKIKELQNAGDRLLREDH--PARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQF 119
Query: 518 IAAVKDLDFWLGEVESLL---TSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQ 574
+ V++ + L +++ L S D + +++L++ Q + + + + + +
Sbjct: 120 FSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKR 179
Query: 575 ADSLIDSGQFDASSIQEKRQSINERY 600
A +++ + R +
Sbjct: 180 AKAVVQLKPRHPAHPMRGRLPLLAVC 205
Score = 102 bits (256), Expect = 5e-24
Identities = 32/197 (16%), Positives = 72/197 (36%), Gaps = 3/197 (1%)
Query: 80 ATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAAL 139
+ + S + F + W+ EK+E D ++ A + + L R+L
Sbjct: 1 GSHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELK 60
Query: 140 GDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFL 199
KI++L +RL++ + Q + +W+ + + L ++ +F
Sbjct: 61 EKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFF 120
Query: 200 SDYRDLMSWINSM---MGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFG 256
SD R+ + + + S + + VT E LL+ Q+ + +++ G
Sbjct: 121 SDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRA 180
Query: 257 QQLLQSGHYASVEIQDK 273
+ ++Q
Sbjct: 181 KAVVQLKPRHPAHPMRG 197
Score = 95.9 bits (238), Expect = 1e-21
Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 4/172 (2%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQL 62
D + + ++ + +L+ E ++ E+ +L+ A +++
Sbjct: 31 EVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDH-PARPTVESFQ 89
Query: 63 QDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNN---DLGKDL 119
L +W+ + QL L +F DV E + +Q+ EAL D +
Sbjct: 90 AALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRSATV 149
Query: 120 RSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEI 171
++ L + + + L + L + A ++Q P + +
Sbjct: 150 TRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKPRHPAHPMRGRLPL 201
Score = 79.0 bits (194), Expect = 6e-16
Identities = 24/191 (12%), Positives = 56/191 (29%), Gaps = 12/191 (6%)
Query: 824 TKLMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFE 883
+ + + F+ A W+ +KE ++ + + L E
Sbjct: 2 SHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKE 61
Query: 884 HEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQI 943
+ I+ + D+L+ +H P + + +W +L + L
Sbjct: 62 KK-IKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAA----- 115
Query: 944 EDLYLTFAKKASSFNSWFENAEEDLTDPVRC---NSIEEIRALREAHAQFQASLSSAQAD 1000
Y F + +E L C ++ + L + + L+ +
Sbjct: 116 ---YFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGH 172
Query: 1001 FEALAALDQQI 1011
LA + +
Sbjct: 173 LSGLAKRAKAV 183
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo
sapiens}
Length = 129
Score = 140 bits (355), Expect = 4e-39
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 7/126 (5%)
Query: 936 MQEQFRQIEDLYLTFAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLS 995
++Q I+ L+L +AK+A+ FN+W E+A EDL D ++IEEI L AH QF+++L
Sbjct: 3 TEKQLEAIDQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLP 62
Query: 996 SAQADFEALAALDQQIKSFN-------VGPNPYTWFTMEALEDTWRNLQKIIKERDIELA 1048
A + EA+ A+ ++ + G NPYT T + + W +Q+++ +RD L
Sbjct: 63 DADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHALL 122
Query: 1049 KEATRQ 1054
+E ++Q
Sbjct: 123 EEQSKQ 128
Score = 34.6 bits (79), Expect = 0.057
Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 8/126 (6%)
Query: 611 QARLNEANTLHQFFRDIADE-ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS 669
+ +L + LH + A +W++ + + ++ L H + ++ L
Sbjct: 4 EKQLEAIDQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPD 63
Query: 670 HQPA-------IQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDE 722
+ Q E + P +++N W +++QL R L E
Sbjct: 64 ADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHALLE 123
Query: 723 SLTYQH 728
+ Q
Sbjct: 124 EQSKQQ 129
Score = 33.9 bits (77), Expect = 0.11
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 10 EDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQ------LQ 63
+E++E + D F+S L + + I + + ++ + Q
Sbjct: 42 HTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQ 101
Query: 64 DLNQKWTSLQQLTAERATQL 83
+N KW +QQL +R L
Sbjct: 102 IINSKWEKVQQLVPKRDHAL 121
Score = 33.1 bits (75), Expect = 0.21
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 9/118 (7%)
Query: 716 RGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSV 775
+ + +D+ + + + W+ + L T+ ++GL+ HD F++
Sbjct: 6 QLEAIDQL--HLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPD 63
Query: 776 H---RDRCADICSAGNKLIEAKNHHADSI----TQRCQQLQLKLDNLMALATKRKTKL 826
R+ I ++ E+ + T Q + K + + L KR L
Sbjct: 64 ADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHAL 121
Score = 31.2 bits (70), Expect = 0.92
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 1048 AKEATRQDENDALRKEFAKHANAFHQWLTET--------RTSMMEGTGSLEQQLEAIKRK 1099
+ + D L E+AK A F+ W+ +E L + K
Sbjct: 1 GSTEKQLEAIDQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKST 60
Query: 1100 AAEVRSRRSDL----KKIEDLGAILEEHLILDNRYTEHSTVGLAQQWDQLDQL 1148
+ R + K+ + + L N YT + + +W+++ QL
Sbjct: 61 LPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQL 113
Score = 28.9 bits (64), Expect = 4.9
Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 304 FYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLAD 363
+ + NWM + L + + +E LI H+ F + + + A+ +
Sbjct: 17 YAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIHK 76
Query: 364 QLIAADHYAAKPIDDK-------RKQVLDRWRLLKEALIEKRSRLGESQTLQQ 409
+ + + + +W +++ + ++ L E Q+ QQ
Sbjct: 77 EAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHALLEEQSKQQ 129
Score = 28.9 bits (64), Expect = 6.1
Identities = 15/117 (12%), Positives = 42/117 (35%), Gaps = 8/117 (6%)
Query: 832 YLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEG----- 886
+L++ +A +W+ ++ + ++ L++ + F + L + E
Sbjct: 14 HLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILA 73
Query: 887 -IQNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQ 942
+ + + P + ++W+K+ R L ++EQ +Q
Sbjct: 74 IHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHAL--LEEQSKQ 128
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 142 bits (358), Expect = 6e-38
Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 9/233 (3%)
Query: 834 QFMWKADVVESWIADKETHVKSEEY-GRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITT 892
+F KA E+W KE + ++Y L+ V+ LL K E F++ L A + + ++ I
Sbjct: 18 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQ-DRVEQIAA 76
Query: 893 LKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAK 952
+ +L ++ + R + +W +L + R++ L RM++ I+ L+L FAK
Sbjct: 77 IAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAK 136
Query: 953 KASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIK 1012
+A+ FN+W E A EDL D +SIEEI++L AH QF+A+L A + +++ A+ +++
Sbjct: 137 RAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVE 196
Query: 1013 SF-------NVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDEND 1058
NPY+ TM+ L W +++++ RD L +E RQ N+
Sbjct: 197 KVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANE 249
Score = 115 bits (289), Expect = 9e-29
Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 16/229 (6%)
Query: 517 YIAAVKDLDFWLGEVESLLTSED-SGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQA 575
+ + W E +L +D L V+ L++KH+ E+D+ AH DR++ + A
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 78
Query: 576 DSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQ--------FFRDI 627
L + DA ++ ++ Q I ++++R+ L R+ L L + F +
Sbjct: 79 QELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRA 138
Query: 628 ADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDV 687
A +W++ + + +Q+L H++ +A L Q++ ++ V
Sbjct: 139 APFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKV 198
Query: 688 -------SNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHF 729
+ P + L W ++KQL R Q L E L QH
Sbjct: 199 IQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHA 247
Score = 108 bits (271), Expect = 2e-26
Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 17/244 (6%)
Query: 289 IARRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKT-DNVEALIKKHEDFDKA 347
I R +L+ + F + E W +E L ++ +S + V AL++KHE F+
Sbjct: 6 IRRLERLEHLA--EKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESD 63
Query: 348 INAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTL 407
+ AH++++ + +A +L D++ A ++D+ +++ D+W L ++R L + L
Sbjct: 64 LAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKL 123
Query: 408 QQ--------FSRDADEMENWIAEKL-QLATEESYKDPANIQSKHQKHQAFEAELAANAD 458
+ F++ A NW+ + L IQS H+ F+A L
Sbjct: 124 LETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADG 183
Query: 459 RIQSVLAMGQNLIDKRQCVGSEEA-----VQARLASIADQWEFLTQKTTEKSLKLKEANK 513
QS++A+ + Q + + + +W+ + Q + L+E
Sbjct: 184 ERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELA 243
Query: 514 QRTY 517
++
Sbjct: 244 RQHA 247
Score = 106 bits (266), Expect = 1e-25
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 18/243 (7%)
Query: 609 HRQARLNEANTLHQFFRDIADEESWIKEK-KLLVGSDDYGRDLTGVQNLKKKHKRLEAEL 667
R RL +F + + E+W K ++L+ D LT V+ L +KH+ E++L
Sbjct: 7 RRLERLEHL--AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDL 64
Query: 668 ASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLT-- 725
A+HQ ++ + ++L ++ + R + + W L L R + L+
Sbjct: 65 AAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLL 124
Query: 726 ------YQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDR 779
+ F + W+ + L ++ +Q L+ H+ F+
Sbjct: 125 ETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGE 184
Query: 780 CADICSAGNKLIEAKNHHADS-------ITQRCQQLQLKLDNLMALATKRKTKLMDNSAY 832
I + N++ + + T +L+ K D + L R L + A
Sbjct: 185 RQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELAR 244
Query: 833 LQF 835
Sbjct: 245 QHA 247
Score = 102 bits (254), Expect = 4e-24
Identities = 43/235 (18%), Positives = 86/235 (36%), Gaps = 16/235 (6%)
Query: 87 HEVQRFHRDVDETKDWIQEKDEALNNND-LGKDLRSVQALQRKHEGLERDLAALGDKIRQ 145
H ++F + + W K++ L D L V+AL RKHE E DLAA D++ Q
Sbjct: 14 HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQ 73
Query: 146 LDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQR-------- 197
+ A L + A + ++I ++W +L R+E L L
Sbjct: 74 IAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLE 133
Query: 198 FLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQ 257
F +W+ M + + + + ++L+ H++ + + G Q+
Sbjct: 134 FAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQN 193
Query: 258 QLLQ-------SGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFY 305
++ + ++ + L + +++ R L + L Q
Sbjct: 194 EVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHAN 248
Score = 101 bits (252), Expect = 7e-24
Identities = 44/237 (18%), Positives = 86/237 (36%), Gaps = 19/237 (8%)
Query: 405 QTLQQFSRDADEMENWIAEKLQLATEESY--KDPANIQSKHQKHQAFEAELAANADRIQS 462
++F + A E W K Q+ ++ Y +++ +KH+AFE++LAA+ DR++
Sbjct: 14 HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQ 73
Query: 463 VLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQ-------- 514
+ A+ Q L + V R I DQW+ L T ++ L+ K
Sbjct: 74 IAAIAQELNELDYH--DAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLH 131
Query: 515 RTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQ 574
+ + W+ L + +Q+LI H+ +A + D + +
Sbjct: 132 LEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAI 191
Query: 575 ADSLIDSGQFDASS-------IQEKRQSINERYERIKNLAAHRQARLNEANTLHQFF 624
+ + Q + +++++K L R L E
Sbjct: 192 QNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHAN 248
Score = 94.7 bits (235), Expect = 1e-21
Identities = 37/242 (15%), Positives = 86/242 (35%), Gaps = 18/242 (7%)
Query: 185 RKEKLLDSYDLQRFLSDYRDLMSWINSMMG-LVSSDELANDVTGAEALLERHQEHRTEID 243
R E+L ++F +W L+ D + +T ALL +H+ +++
Sbjct: 8 RLERLEHL--AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLA 65
Query: 244 ARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQ- 302
A + Q+L + ++ +V + D+ + + + L RR L++ +L
Sbjct: 66 AHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLE 125
Query: 303 -------LFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKI 355
F + NWM L + + +++LI HE F + + +
Sbjct: 126 TIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGER 185
Query: 356 GALQTLADQLIA-------ADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQ 408
++ + +++ + ++ +W +K+ + + L E Q
Sbjct: 186 QSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQ 245
Query: 409 QF 410
Sbjct: 246 HA 247
Score = 89.0 bits (220), Expect = 1e-19
Identities = 36/207 (17%), Positives = 78/207 (37%), Gaps = 16/207 (7%)
Query: 7 DVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDLN 66
L +V + +K + F+SDL A++ R+ ++ IA +L L +A + + Q +
Sbjct: 42 YESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAV-NVNDRCQKIC 100
Query: 67 QKWTSLQQLTAERATQLGSAHEVQR--------FHRDVDETKDWIQEKDEALNNNDLGKD 118
+W L LT +R L ++ F + +W++ E L + +
Sbjct: 101 DQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHS 160
Query: 119 LRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQ-------THPETAEQTYAKQKEI 171
+ +Q+L HE + L + + + N + + + + E+
Sbjct: 161 IEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDEL 220
Query: 172 NEEWTQLTAKANTRKEKLLDSYDLQRF 198
+W ++ R + L + Q
Sbjct: 221 RTKWDKVKQLVPIRDQSLQEELARQHA 247
Score = 77.0 bits (189), Expect = 1e-15
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 13/242 (5%)
Query: 937 QEQFRQIEDLYLTFAKKASSFNSWFENAEEDLTDP-VRCNSIEEIRALREAHAQFQASLS 995
+ ++E L F +KAS+ +W E+ L S+ E+RAL H F++ L+
Sbjct: 6 IRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLA 65
Query: 996 SAQADFEALAALDQQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQD 1055
+ Q E +AA+ Q++ + + + D W L + ++R L + +
Sbjct: 66 AHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLE 125
Query: 1056 ENDALRKEFAKHANAFHQWLTETRTSM--------MEGTGSLEQQLEAIKRKAAEVRSRR 1107
D L EFAK A F+ W+ + +E SL E K E R
Sbjct: 126 TIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGER 185
Query: 1108 SDL----KKIEDLGAILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQAR 1163
+ ++E + + N Y+ + L +WD++ QL +L++++ +
Sbjct: 186 QSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQ 245
Query: 1164 NQ 1165
+
Sbjct: 246 HA 247
Score = 44.7 bits (105), Expect = 8e-05
Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 6 QDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALK------IQ 59
+ +E+++ + + F++ L + + I ++ + Q+
Sbjct: 155 MFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYST 214
Query: 60 TQLQDLNQKWTSLQQLTAERATQLGSAHEVQRFH 93
+ +L KW ++QL R L Q +
Sbjct: 215 VTMDELRTKWDKVKQLVPIRDQSLQEELARQHAN 248
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 138 bits (348), Expect = 6e-37
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 3/218 (1%)
Query: 619 TLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAEL-ASHQPAIQNV 677
+L Q R+ D E WI EK+L+ S + G+D V L+ K + E A Q + NV
Sbjct: 2 SLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNV 61
Query: 678 QETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEE 737
E+L+D + I + LN+ W++L +L R Q L S + E
Sbjct: 62 NAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEIL 121
Query: 738 AWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNH- 796
I EK + L ED G + + + H AFE + + + +L A
Sbjct: 122 GLIDEKHRELP-EDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGE 180
Query: 797 HADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQ 834
A++I + Q++ L+ R+T+L+D + +
Sbjct: 181 KAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKFR 218
Score = 136 bits (343), Expect = 3e-36
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 3 AQVQDVGEDLEQVEVMQKKFDDFQSDLKAN-EVRLAEMNEIAMQLMSLGQTEAALKIQTQ 61
A ++G+D + V +++ KF DF + A + R+ +N +L+ G +EAA I
Sbjct: 24 ASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAA-TIAEW 82
Query: 62 LQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRS 121
LN+ W L +L R L +++++ R+ E I EK L D+G D +
Sbjct: 83 KDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL-PEDVGLDAST 141
Query: 122 VQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHP-ETAEQTYAKQKEINEEWTQLTA 180
++ R H ER+L LG +++Q + A RL + E AE K++E++ W L
Sbjct: 142 AESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLD 201
Query: 181 KANTRKEKLLDSYDLQR 197
R+ +L+D+ D R
Sbjct: 202 ACAGRRTQLVDTADKFR 218
Score = 132 bits (334), Expect = 4e-35
Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 3/213 (1%)
Query: 517 YIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQA-HDDRIKDMNGQA 575
DL+ W+ E E + +S + G+D V L K + + A +R+ ++N
Sbjct: 6 LKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFI 65
Query: 576 DSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIK 635
+ LID+G +A++I E + +NE + + L R L + LH++F A+ I
Sbjct: 66 ERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLID 125
Query: 636 EKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDV-SNLGVPE 694
EK + +D G D + ++ + H E EL +Q Q+ +L +
Sbjct: 126 EKHREL-PEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEA 184
Query: 695 IEQRLKLLNQAWSELKQLAANRGQKLDESLTYQ 727
I+ + + ++ AW L A R +L ++
Sbjct: 185 IQNKEQEVSAAWQALLDACAGRRTQLVDTADKF 217
Score = 123 bits (311), Expect = 5e-32
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 2/215 (0%)
Query: 301 LQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINA-HEEKIGALQ 359
L R+ + E W+S +E ++ E+ D+V L K DF + A +E++ +
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 360 TLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMEN 419
++LI A H A I + + + + W L E + + L S L ++ E+
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILG 122
Query: 420 WIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGS 479
I EK + E+ D + +S H+ H AFE EL ++Q + L +
Sbjct: 123 LIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKA 182
Query: 480 EEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQ 514
E +Q + ++ W+ L + +L + +
Sbjct: 183 EA-IQNKEQEVSAAWQALLDACAGRRTQLVDTADK 216
Score = 119 bits (299), Expect = 2e-30
Identities = 43/217 (19%), Positives = 89/217 (41%), Gaps = 3/217 (1%)
Query: 195 LQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDA-RTGTFQAFD 253
L + + DL WI+ + SS E+ D L ++ ++ E A +
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 254 LFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAEN 313
F ++L+ +GH + I + L E DL + R L +L ++ +
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILG 122
Query: 314 WMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHY-A 372
+ + L E+V E+ + H F++ ++ ++ Q +A +L A
Sbjct: 123 LIDEKHRELP-EDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEK 181
Query: 373 AKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQ 409
A+ I +K ++V W+ L +A +R++L ++ +
Sbjct: 182 AEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKFR 218
Score = 117 bits (295), Expect = 6e-30
Identities = 47/217 (21%), Positives = 92/217 (42%), Gaps = 4/217 (1%)
Query: 727 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDF-SVHRDRCADICS 785
+ ++ E WISEK+ + S + G V L K F + ++ ++R ++ +
Sbjct: 4 FQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNA 63
Query: 786 AGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESW 845
+LI+A + A +I + L +L+ L R L + ++ + +
Sbjct: 64 FIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGL 123
Query: 846 IADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNH-DQ 904
I +K + E+ G D ST ++ F+ LH +Q + +L + ++
Sbjct: 124 IDEKHREL-PEDVGLDASTAESFHRVHTAFERELHLLG-VQVQQFQDVATRLQTAYAGEK 181
Query: 905 TPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFR 941
AI + +V A WQ LL R+ +L+ ++FR
Sbjct: 182 AEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKFR 218
Score = 112 bits (280), Expect = 6e-28
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 3/215 (1%)
Query: 90 QRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALG-DKIRQLDE 148
+ R+ D+ + WI EK+ ++ ++G+D V L+ K R+ A+G +++ ++
Sbjct: 4 FQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNA 63
Query: 149 TANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSW 208
RL+ A + +NE W L +TR + L SYDL R+ +++
Sbjct: 64 FIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGL 123
Query: 209 INSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHY-AS 267
I+ + +++ D + AE+ H E+ Q F +L + +
Sbjct: 124 IDEKHREL-PEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKA 182
Query: 268 VEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQ 302
IQ+K ++ A + L A RR QL +
Sbjct: 183 EAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKF 217
Score = 111 bits (279), Expect = 1e-27
Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 6/220 (2%)
Query: 406 TLQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANA-DRIQSV 463
+L Q R+ D++E WI+EK +A+ +D ++ K + F E A +R+ +V
Sbjct: 2 SLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNV 61
Query: 464 LAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKD 523
A + LID + + + W L + + L + Y +
Sbjct: 62 NAFIERLIDAGHS--EAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAE 119
Query: 524 LDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQ 583
+ + E L ED G D ++ ++ + H E ++ +++ A L +
Sbjct: 120 ILGLIDEKHREL-PEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYA 178
Query: 584 FD-ASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQ 622
+ A +IQ K Q ++ ++ + + A R+ +L + +
Sbjct: 179 GEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKFR 218
Score = 88.1 bits (218), Expect = 1e-19
Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 10/226 (4%)
Query: 830 SAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQN 889
+ Q + D +E WI++KE S E G+D V L K F A E + N
Sbjct: 1 GSLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDN 60
Query: 890 ITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLT 949
+ ++L+ + H + I + + W LL + R Q L + R
Sbjct: 61 VNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHR-------- 112
Query: 950 FAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQ 1009
+ + + +L + V + H F+ L + +
Sbjct: 113 YFYTGAEILGLIDEKHRELPEDV-GLDASTAESFHRVHTAFERELHLLGVQVQQFQDVAT 171
Query: 1010 QIKSFNVGPNPYT-WFTMEALEDTWRNLQKIIKERDIELAKEATRQ 1054
++++ G + + W+ L R +L A +
Sbjct: 172 RLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKF 217
Score = 37.3 bits (86), Expect = 0.021
Identities = 23/219 (10%), Positives = 58/219 (26%), Gaps = 14/219 (6%)
Query: 950 FAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQAD-FEALAALD 1008
++ W E + P + + LR+ F + + + + A
Sbjct: 6 LKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFI 65
Query: 1009 QQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHA 1068
+++ + L + W +L ++I R L +
Sbjct: 66 ERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLL--------AASYDLHRYFYTG 117
Query: 1069 NAFHQWLTETRTSMMEGTGSLEQQLEAIKRK----AAEVRSRRSDLKKIEDLGA-ILEEH 1123
+ E + E G E+ R E+ +++ +D+ + +
Sbjct: 118 AEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAY 177
Query: 1124 LILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQA 1162
++ ++ W L + L
Sbjct: 178 AGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADK 216
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP:
a.7.1.1
Length = 107
Score = 114 bits (288), Expect = 2e-30
Identities = 78/107 (72%), Positives = 92/107 (85%)
Query: 297 QCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIG 356
Q L+LQL+ RDCE AE+WMSAREAFLNA++ + NVEALIKKHEDFDKAIN HE+KI
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 357 ALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGE 403
ALQT+ADQLIA +HYA+ +D+KRKQVL+RWR LKE LIEKRSRLG+
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 90.3 bits (224), Expect = 1e-21
Identities = 22/107 (20%), Positives = 59/107 (55%)
Query: 722 ESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCA 781
++L Q ++ E E+W+S ++ L+ +D + V+ L+KKH+ F+ + H + A
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 782 DICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMD 828
+ + ++LI ++ ++ + ++ +Q+ + +L +++++L D
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 84.1 bits (208), Expect = 2e-19
Identities = 25/106 (23%), Positives = 51/106 (48%)
Query: 86 AHEVQRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQ 145
++Q + RD + + W+ ++ LN +D +V+AL +KHE ++ + KI
Sbjct: 2 NLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAA 61
Query: 146 LDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLD 191
L A++L+ + + K+K++ E W L ++ +L D
Sbjct: 62 LQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 83.0 bits (205), Expect = 4e-19
Identities = 22/103 (21%), Positives = 49/103 (47%)
Query: 620 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQE 679
L + RD ESW+ ++ + +DD V+ L KKH+ + + H+ I +Q
Sbjct: 5 LQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQT 64
Query: 680 TGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDE 722
++L+ ++ ++++ K + + W LK+ + +L +
Sbjct: 65 VADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 80.3 bits (198), Expect = 4e-18
Identities = 26/102 (25%), Positives = 53/102 (51%)
Query: 515 RTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQ 574
+ Y+ + + W+ E+ L ++D +V+ LIKKH+ + I H+ +I +
Sbjct: 6 QLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTV 65
Query: 575 ADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNE 616
AD LI + ++ + EKR+ + ER+ +K +++RL +
Sbjct: 66 ADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 72.9 bits (179), Expect = 1e-15
Identities = 27/105 (25%), Positives = 51/105 (48%)
Query: 192 SYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQA 251
+ DLQ ++ D SW+++ +++D+ AN EAL+++H++ I+ A
Sbjct: 2 NLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAA 61
Query: 252 FDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLD 296
QL+ HYAS + +K + E L++ I +R +L
Sbjct: 62 LQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLG 106
Score = 67.2 bits (164), Expect = 1e-13
Identities = 20/109 (18%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 403 ESQTLQQFSRDADEMENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQ 461
++ LQ + RD + E+W++ + L ++ N+++ +KH+ F+ + + +I
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 462 SVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKE 510
++ + LI + + V + + ++W L + EK +L +
Sbjct: 61 ALQTVADQLIAQNHY--ASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 66.4 bits (162), Expect = 3e-13
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 834 QFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTL 893
+M ++ ESW++ +E + +++ V+ L+ K E FD ++ E + I + T+
Sbjct: 7 LYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHE-QKIAALQTV 65
Query: 894 KDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRL 933
DQL+A NH + + ++ V+ RW+ L ++ RL
Sbjct: 66 ADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRL 105
Score = 50.2 bits (120), Expect = 1e-07
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 6 QDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDL 65
D VE + KK +DF + +E ++A + +A QL++ + + + + +
Sbjct: 29 DDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASN-LVDEKRKQV 87
Query: 66 NQKWTSLQQLTAERATQLG 84
++W L++ E+ ++LG
Sbjct: 88 LERWRHLKEGLIEKRSRLG 106
Score = 31.0 bits (70), Expect = 0.65
Identities = 17/94 (18%), Positives = 38/94 (40%)
Query: 950 FAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQ 1009
+ + SW E L N+ + AL + H F +++ + AL +
Sbjct: 8 YMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVAD 67
Query: 1010 QIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKER 1043
Q+ + N + + + + WR+L++ + E+
Sbjct: 68 QLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEK 101
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 106 bits (265), Expect = 1e-26
Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 351 HEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQF 410
K +++ +++ A+ I ++R++VL R++ KE + E+ +L +S LQ F
Sbjct: 6 QFPKETVVESSGPKVLET----AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVF 61
Query: 411 SRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNL 470
RDAD++ WI EK+ + T++SY+DP NIQ K+QKHQ+ EAE+ + + + +
Sbjct: 62 KRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREER 121
Query: 471 IDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEA 511
+ E +A + + W+ L + T EK +L A
Sbjct: 122 FTMGHS--AHEETKAHIEELRHLWDLLLELTLEKGDQLLRA 160
Score = 105 bits (264), Expect = 2e-26
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 5/161 (3%)
Query: 564 HDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQF 623
+ + +++ A IQE+RQ + RY+ K A R +L ++ L F
Sbjct: 6 QFPKETVVESSGPKVLE----TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVF 61
Query: 624 FRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEK 683
RD D WI EK ++ Y D T +Q +KH+ LEAE+ + + +++T E+
Sbjct: 62 KRDADDLGKWIMEKVNILTDKSY-EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREE 120
Query: 684 LMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESL 724
+ + E + ++ L W L +L +G +L +L
Sbjct: 121 RFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRAL 161
Score = 101 bits (253), Expect = 6e-25
Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 670 HQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHF 729
P V+ +G K+++ + EI++R + + + K+ A RGQKL++S Q F
Sbjct: 6 QFPKETVVESSGPKVLETAE----EIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVF 61
Query: 730 LAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNK 789
++ WI EK +L+ + Y D +QG +KH + E + +++ +
Sbjct: 62 KRDADDLGKWIMEKVNILTDKSYEDP-TNIQGKYQKHQSLEAEVQTKSRLMSELEKTREE 120
Query: 790 LIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMD 828
+ + ++L+ D L+ L ++ +L+
Sbjct: 121 RFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLR 159
Score = 90.4 bits (224), Expect = 4e-21
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 1/155 (0%)
Query: 38 EMNEIAMQLMSLGQTEAALKIQTQLQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVD 97
E ++ E A +IQ + Q++ ++ S ++ AER +L ++ +Q F RD D
Sbjct: 7 FPKETVVESSGPKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDAD 66
Query: 98 ETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTH 157
+ WI EK L + +D ++Q +KH+ LE ++ + +L++T
Sbjct: 67 DLGKWIMEKVNILTDKS-YEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMG 125
Query: 158 PETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDS 192
E+T A +E+ W L + ++LL +
Sbjct: 126 HSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRA 160
Score = 85.0 bits (210), Expect = 4e-19
Identities = 28/155 (18%), Positives = 65/155 (41%), Gaps = 5/155 (3%)
Query: 250 QAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCE 309
+ G ++L++ + EIQ++ + + ++ R +L+ LQ+F RD +
Sbjct: 11 TVVESSGPKVLET----AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDAD 66
Query: 310 QAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAAD 369
W+ + L + + T N++ +KH+ + + + L+ ++
Sbjct: 67 DLGKWIMEKVNILTDKSYEDPT-NIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMG 125
Query: 370 HYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGES 404
H A + +++ W LL E +EK +L +
Sbjct: 126 HSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRA 160
Score = 81.5 bits (201), Expect = 5e-18
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Query: 142 KIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSD 201
K ++ + +++ ETAE+ +++E+ + + R +KL DSY LQ F D
Sbjct: 9 KETVVESSGPKVL----ETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRD 64
Query: 202 YRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQ 261
DL WI + + +D+ D T + ++HQ E+ ++ + ++
Sbjct: 65 ADDLGKWIMEKV-NILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFT 123
Query: 262 SGHYASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCL 299
GH A E + + L + L + + + QL + L
Sbjct: 124 MGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRAL 161
Score = 75.0 bits (184), Expect = 1e-15
Identities = 24/137 (17%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 481 EAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDS 540
E +Q R + +++ ++ E+ KL+++ + + DL W+ E ++LT +
Sbjct: 25 EEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKS- 83
Query: 541 GKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERY 600
+D ++Q +KHQ +EA++Q + ++ + G + + + +
Sbjct: 84 YEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLW 143
Query: 601 ERIKNLAAHRQARLNEA 617
+ + L + +L A
Sbjct: 144 DLLLELTLEKGDQLLRA 160
Score = 68.8 bits (168), Expect = 2e-13
Identities = 28/158 (17%), Positives = 61/158 (38%), Gaps = 6/158 (3%)
Query: 776 HRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQF 835
+ + S+G K++E A+ I +R Q++ + + +R KL D+ F
Sbjct: 6 QFPKETVVESSGPKVLE----TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVF 61
Query: 836 MWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKD 895
AD + WI +K + + Y D + +Q K ++ +A + + + ++
Sbjct: 62 KRDADDLGKWIMEKVNILTDKSY-EDPTNIQGKYQKHQSLEAEVQTKS-RLMSELEKTRE 119
Query: 896 QLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRL 933
+ H ++ W LL + + +L
Sbjct: 120 ERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQL 157
Score = 50.3 bits (120), Expect = 3e-07
Identities = 15/86 (17%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 1 MHAQVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQT 60
++ ED ++ +K +++++ ++E+ + + ++G A + +
Sbjct: 76 VNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMG-HSAHEETKA 134
Query: 61 QLQDLNQKWTSLQQLTAERATQLGSA 86
+++L W L +LT E+ QL A
Sbjct: 135 HIEELRHLWDLLLELTLEKGDQLLRA 160
Score = 31.4 bits (71), Expect = 1.0
Identities = 20/137 (14%), Positives = 52/137 (37%), Gaps = 12/137 (8%)
Query: 1026 MEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMMEG 1085
+ + +++ ++ + ER +L E+ + F + A+ +W+ E + +
Sbjct: 31 RQEVLTRYQSFKERVAERGQKL--------EDSYHLQVFKRDADDLGKWIMEKVNILTDK 82
Query: 1086 TGSLEQQLEAIKRK----AAEVRSRRSDLKKIEDLGAILEEHLILDNRYTEHSTVGLAQQ 1141
+ ++ +K AEV+++ + ++E + T+ L
Sbjct: 83 SYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHL 142
Query: 1142 WDQLDQLGMRMQHNLEQ 1158
WD L +L + L +
Sbjct: 143 WDLLLELTLEKGDQLLR 159
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 101 bits (253), Expect = 4e-25
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Query: 585 DASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSD 644
A IQE+RQ + +RY R K L+ R+ +L ++ F RD + E WI+EK + +
Sbjct: 13 TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDE 72
Query: 645 DYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQ 704
+Y D T +Q +KH+ EAE+ ++ AI + ETG ++ + I RL L++
Sbjct: 73 NYK-DPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHR 131
Query: 705 AWSELKQLAANRGQKLDE 722
W L + +G KL +
Sbjct: 132 QWELLLEKMREKGIKLLQ 149
Score = 99.6 bits (248), Expect = 2e-24
Identities = 62/155 (40%), Positives = 94/155 (60%), Gaps = 6/155 (3%)
Query: 356 GALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDAD 415
G++ +++ A+ I ++R+QVLDR+ KE +R +L +S Q F RDA+
Sbjct: 1 GSMDPSGVKVLET----AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAE 56
Query: 416 EMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQ 475
E+E WI EKLQ+A++E+YKDP N+Q K QKHQAFEAE+ AN+ I + G +I +
Sbjct: 57 ELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGH 116
Query: 476 CVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKE 510
+ E ++ RL + QWE L +K EK +KL +
Sbjct: 117 F--ASETIRTRLMELHRQWELLLEKMREKGIKLLQ 149
Score = 98.4 bits (245), Expect = 6e-24
Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Query: 677 VQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEE 736
+ +G K+++ + +I++R + + + K+L+ R QKL++S +Q F EE
Sbjct: 3 MDPSGVKVLETA----EDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEEL 58
Query: 737 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNH 796
E WI EK Q+ S E+Y D +QG L+KH AFE + + + GN +I +
Sbjct: 59 EKWIQEKLQIASDENYKDP-TNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHF 117
Query: 797 HADSITQRCQQLQLKLDNLMALATKRKTKL 826
+++I R +L + + L+ ++ KL
Sbjct: 118 ASETIRTRLMELHRQWELLLEKMREKGIKL 147
Score = 88.8 bits (220), Expect = 1e-20
Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 269 EIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVD 328
+IQ++ + + ++ RR +L+ Q F RD E+ E W+ + + E
Sbjct: 16 DIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDENYK 75
Query: 329 SKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWR 388
N++ ++KH+ F+ + A+ I L + +I+ H+A++ I + ++ +W
Sbjct: 76 D-PTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWE 134
Query: 389 LLKEALIEKRSRLGE 403
LL E + EK +L +
Sbjct: 135 LLLEKMREKGIKLLQ 149
Score = 88.0 bits (218), Expect = 2e-20
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Query: 43 AMQLMSLGQTEAALKIQTQLQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDW 102
+M + E A IQ + Q + ++ ++L+ R +L ++ Q F RD +E + W
Sbjct: 2 SMDPSGVKVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKW 61
Query: 103 IQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAE 162
IQEK + ++ + KD ++Q +KH+ E ++ A I +LDET N ++ +E
Sbjct: 62 IQEKLQIASDEN-YKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASE 120
Query: 163 QTYAKQKEINEEWTQLTAKANTRKEKL 189
+ E++ +W L K + KL
Sbjct: 121 TIRTRLMELHRQWELLLEKMREKGIKL 147
Score = 81.8 bits (202), Expect = 4e-18
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 1/140 (0%)
Query: 158 PETAEQTYAKQKEINEEWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVS 217
ETAE +++++ + + + + R++KL DSY Q F D +L WI + ++
Sbjct: 11 LETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKL-QIA 69
Query: 218 SDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNL 277
SDE D T + L++HQ E+ A +G D G ++ GH+AS I+ +L L
Sbjct: 70 SDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMEL 129
Query: 278 AEAREDLEKAWIARRMQLDQ 297
E L + + ++L Q
Sbjct: 130 HRQWELLLEKMREKGIKLLQ 149
Score = 76.8 bits (189), Expect = 2e-16
Identities = 28/136 (20%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 481 EAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDS 540
E +Q R + D++ + +T + KL+++ + + + ++L+ W+ E + + E+
Sbjct: 15 EDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDEN- 73
Query: 541 GKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERY 600
KD ++Q ++KHQ EA++QA+ I ++ + +I G F + +I+ + ++ ++
Sbjct: 74 YKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQW 133
Query: 601 ERIKNLAAHRQARLNE 616
E + + +L +
Sbjct: 134 ELLLEKMREKGIKLLQ 149
Score = 65.7 bits (160), Expect = 2e-12
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 798 ADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEE 857
A+ I +R QQ+ + L+T R+ KL D+ + F A+ +E WI +K E
Sbjct: 14 AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDEN 73
Query: 858 YGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIA 917
Y D + +Q L K + F+A + A I + + +++ H + I R ++
Sbjct: 74 YK-DPTNLQGKLQKHQAFEAEVQANS-GAIVKLDETGNLMISEGHFASETIRTRLMELHR 131
Query: 918 RWQKLLGDSNARKQRLLR 935
+W+ LL + +LL+
Sbjct: 132 QWELLLEKMREKGIKLLQ 149
Score = 49.1 bits (117), Expect = 9e-07
Identities = 17/83 (20%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 1 MHAQVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQT 60
+ + +D ++ +K F+++++AN + +++E ++S G A+ I+T
Sbjct: 66 LQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGH-FASETIRT 124
Query: 61 QLQDLNQKWTSLQQLTAERATQL 83
+L +L+++W L + E+ +L
Sbjct: 125 RLMELHRQWELLLEKMREKGIKL 147
Score = 31.8 bits (72), Expect = 0.68
Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 12/138 (8%)
Query: 1025 TMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMME 1084
+ + D + +++ R +L E+ + F + A +W+ E +
Sbjct: 20 RRQQVLDRYHRFKELSTLRRQKL--------EDSYRFQFFQRDAEELEKWIQEKLQIASD 71
Query: 1085 GTGSLEQQLEAIKRK----AAEVRSRRSDLKKIEDLGAILEEHLILDNRYTEHSTVGLAQ 1140
L+ +K AEV++ + K+++ G ++ + + L +
Sbjct: 72 ENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHR 131
Query: 1141 QWDQLDQLGMRMQHNLEQ 1158
QW+ L + L Q
Sbjct: 132 QWELLLEKMREKGIKLLQ 149
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural
protein, Z-DISK structural complex; NMR {Homo sapiens}
SCOP: a.39.1.7
Length = 75
Score = 92.2 bits (229), Expect = 1e-22
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 1248 TENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPG 1307
+ ++E++ +F +A+ D+PY+ EEL L + A YC++RM Y P +PG
Sbjct: 3 MADTDTAEQVIASFRILAS-DKPYILAEELRRELPPDQAQYCIKRMPAYSGP---GSVPG 58
Query: 1308 ALDYIEFTRTLF 1319
ALDY F+ L+
Sbjct: 59 ALDYAAFSSALY 70
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 95.6 bits (237), Expect = 5e-22
Identities = 30/238 (12%), Positives = 78/238 (32%), Gaps = 21/238 (8%)
Query: 188 KLLDSYDLQRFLSDYR----DLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRT--- 240
+ + +LQ +YR L+ W+ + E L + + +
Sbjct: 2 SHMRANELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMEL 61
Query: 241 --------EIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARR 292
+ + GQ + G++ +++ + G L A + EK +
Sbjct: 62 PAKEADKNRSKGIYQSLEGAVQAGQLKVPPGYHPL-DVEKEWGKLHVAILEREKQLRSEF 120
Query: 293 MQLDQCLEL-QLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAH 351
+L+ + + AE ++ +A L + D + + ++ + ++ ++
Sbjct: 121 ERLEALQRIVTKLQMEAGLAEEQLNQADALLQS---DVRLLAAGKVPQRAGEVERDLDKA 177
Query: 352 EEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQ 409
+ I L L H + + + ++ R ++ R + G + Q
Sbjct: 178 DSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEY-NLRLKAGVAAPATQ 234
Score = 80.2 bits (197), Expect = 8e-17
Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 17/202 (8%)
Query: 1 MHAQVQDVGEDLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSL----GQTEAAL 56
+ + E++E++ +F F+ + A+ N SL + +
Sbjct: 32 AAFEERRFPSSFEEIEILWSQFLKFKEMELP--AKEADKNRSKGIYQSLEGAVQAGQLKV 89
Query: 57 KIQTQLQDLNQKWTSLQQLTAERATQLGSAHEVQ--------RFHRDVDETKDWIQEKDE 108
D+ ++W L ER QL S E + + ++ + + D
Sbjct: 90 PPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADA 149
Query: 109 ALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQ 168
L ++ L + + ++ +ERDL IR L L EQ Y +
Sbjct: 150 LLQSDV---RLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRV 206
Query: 169 KEINEEWTQLTAKANTRKEKLL 190
+++ + + N R + +
Sbjct: 207 YRLHKRLVAIRTEYNLRLKAGV 228
Score = 74.8 bits (183), Expect = 7e-15
Identities = 25/228 (10%), Positives = 68/228 (29%), Gaps = 17/228 (7%)
Query: 613 RLNEANTLHQFFRDIADE-ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAEL---- 667
R NE Q +R++ W++ + ++ L + + +
Sbjct: 5 RANELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAK 64
Query: 668 ASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQ 727
+ + + + ++ E + L VP + + W +L R ++L
Sbjct: 65 EADKNRSKGIYQSLEGAVQAGQLKVPP-GYHPLDVEKEWGKLHVAILEREKQLRSEFERL 123
Query: 728 H--------FLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDR 779
+ E +++ LL + + ++ E D
Sbjct: 124 EALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLAAGK---VPQRAGEVERDLDKADSM 180
Query: 780 CADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLM 827
+ + L + ++ + + +R +L +L + R +
Sbjct: 181 IRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGV 228
Score = 66.3 bits (161), Expect = 5e-12
Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 14/228 (6%)
Query: 405 QTLQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAF-EAELAANADRIQS 462
Q++ + W+ E + I+ + F E EL A
Sbjct: 11 LRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNR 70
Query: 463 VLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAV- 521
+ Q+L Q + + +W L E+ +L+ ++ + +
Sbjct: 71 SKGIYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIV 130
Query: 522 -------KDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQ 574
+ L + ++LL S+ L + + ++ VE D+ D I+ +
Sbjct: 131 TKLQMEAGLAEEQLNQADALLQSDV---RLLAAGKVPQRAGEVERDLDKADSMIRLLFND 187
Query: 575 ADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQ 622
+L D + + +++R I+ R + A Q
Sbjct: 188 VQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRL-KAGVAAPATQ 234
Score = 55.5 bits (133), Expect = 2e-08
Identities = 24/228 (10%), Positives = 67/228 (29%), Gaps = 15/228 (6%)
Query: 718 QKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHR 777
+ + L +Q + V W+ + + ++ L + F+ +
Sbjct: 5 RANELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAK 64
Query: 778 DRCADICSAGNKLIEAK---NHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQ 834
+ + + +E ++ + L +R+ +L L+
Sbjct: 65 EADKNRSKGIYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLE 124
Query: 835 --------FMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEG 886
+A + E + + ++S+ L + + + L +
Sbjct: 125 ALQRIVTKLQMEAGLAEEQLNQADALLQSDV---RLLAAGKVPQRAGEVERDLDKAD-SM 180
Query: 887 IQNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLL 934
I+ + L H Q + +R + R + + N R + +
Sbjct: 181 IRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGV 228
Score = 55.5 bits (133), Expect = 2e-08
Identities = 23/216 (10%), Positives = 64/216 (29%), Gaps = 14/216 (6%)
Query: 90 QRFHRDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDET 149
Q + V W++ A ++ L + + + + +
Sbjct: 14 QEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKG 73
Query: 150 ANRLMQTHPETAEQTYAKQK---EINEEWTQLTAKANTRKEKLLDSYDLQ--------RF 198
+ ++ + + ++ +EW +L R+++L ++ +
Sbjct: 74 IYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKL 133
Query: 199 LSDYRDLMSWINSMMGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQ 258
+ +N L+ SD + A + +R E ++D + Q
Sbjct: 134 QMEAGLAEEQLNQADALLQSDV---RLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQT 190
Query: 259 LLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQ 294
L H ++ ++ L + + + R
Sbjct: 191 LKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKA 226
Score = 53.6 bits (128), Expect = 8e-08
Identities = 30/220 (13%), Positives = 68/220 (30%), Gaps = 4/220 (1%)
Query: 942 QIEDLYLTFAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQAS-LSSAQAD 1000
+++ + + + W + + +S EEI L +F+ L + +AD
Sbjct: 8 ELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEAD 67
Query: 1001 FEALAALDQQIKSF--NVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDEND 1058
+ Q ++ + +E W L I ER+ +L E R +
Sbjct: 68 KNRSKGIYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQ 127
Query: 1059 ALRKEFAKHANAFHQWLTETRTSMMEGTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGA 1118
+ + A + L + +++ L + +R R I L
Sbjct: 128 RIVTKLQMEAGLAEEQLNQADA-LLQSDVRLLAAGKVPQRAGEVERDLDKADSMIRLLFN 186
Query: 1119 ILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQ 1158
++ + E + + +L + L+
Sbjct: 187 DVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKA 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.4 bits (187), Expect = 5e-14
Identities = 93/733 (12%), Positives = 208/733 (28%), Gaps = 203/733 (27%)
Query: 551 IKKHQLVEADIQAH--DDRIKDMNGQADSLIDSGQFDASSIQEKRQSI--NERYERIKNL 606
+HQ DI + D + + FD +Q+ +SI E + I
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDN-------------FDCKDVQDMPKSILSKEEIDHIIM- 56
Query: 607 AAHRQARL---------NEANTLHQFFRDIADEE-SWIKEKKLLVGSDDYGRDLTGVQNL 656
+ + + + +F ++ ++ +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP------------------I 98
Query: 657 KKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSEL------- 709
K + ++ + + + + V ++ LKL QA EL
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKL-RQALLELRPAKNVL 154
Query: 710 --------KQ-LAAN--RGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAA 758
K +A + K+ + ++ F W++ K +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---------WLNLKN----CNSPETVLEM 201
Query: 759 VQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMAL 818
+Q LL + D +++ H+ +I R +Q +L L+
Sbjct: 202 LQKLLYQID---------------------PNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 819 ATKRKTKL-MDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDA 877
L + N + A ++ +LS + LLT T
Sbjct: 241 KPYENCLLVLLN------VQNAKAWNAF---------------NLS-CKILLT---TRFK 275
Query: 878 GLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQ 937
+ F +L + D+ ++ + ++ + R Q L
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSL-------LLKY------LDCRPQDL---P 319
Query: 938 EQFRQIEDLYLT-FAKKASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSS 996
+ L+ A+ + ++N + V C+ + I L
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKH-----VNCDKLTTIIES------SLNVLEP 368
Query: 997 A--QADFEALAALDQQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQ 1054
A + F+ L+ + F L W ++ + D+
Sbjct: 369 AEYRKMFDRLS-----V--FPPS----AHIPTILLSLIWFDV----IKSDVM-------V 406
Query: 1055 DENDALRKEFAKHANAFHQWLTETRTSMMEGTGSLEQQLEAIKRKAAEVRSRRSDLKKIE 1114
N + + + E+ S+ L+ +LE + + K
Sbjct: 407 VVNKLHKYSLVE------KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF- 459
Query: 1115 DLGAILEEHLILDNRYTEH-----STVGLAQQWDQLDQ--LGMR-MQHNLEQQIQARNQS 1166
D ++ + LD + H + ++ L R ++ + A N S
Sbjct: 460 DSDDLIPPY--LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1226
G + L++ + N +++ + A+ LP +EE ++ +L +
Sbjct: 518 GSILNTLQQLKFYKPYICD------NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 1227 DPNRDGHVSLQEY 1239
D + + +
Sbjct: 572 LMAEDEAIFEEAH 584
Score = 64.9 bits (157), Expect = 2e-10
Identities = 95/762 (12%), Positives = 210/762 (27%), Gaps = 255/762 (33%)
Query: 7 DVGE-DLEQVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDL 65
+ GE + +++ D F + +V+ ++ ++S + + + + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-----DMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 66 NQK-WTSLQQLTAERATQLGSAHEVQRFHRDVDETK-DWIQEKDEALNNNDLGKDLRSVQ 123
+ WT L + VQ+F +V ++ + + +
Sbjct: 65 LRLFWTLLSK----------QEEMVQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTRM 111
Query: 124 ALQRKHEGLERDLAALGD----KIRQLDETANRLMQTHPETAEQTY-----AKQKEINEE 174
++ + + L D +++ + L++ P K
Sbjct: 112 YIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT------ 164
Query: 175 WTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLER 234
W + SY +Q + + W+N + +S E +LE
Sbjct: 165 W--VALDV-------CLSYKVQCKMDFK---IFWLN--LKNCNSP---------ETVLEM 201
Query: 235 HQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRMQ 294
Q+ +ID S S I+ ++ ++ L K+
Sbjct: 202 LQKLLYQID--------------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-----P 242
Query: 295 LDQCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEK 354
+ CL L + + A+ W AF + K L+ K +
Sbjct: 243 YENCL---LVLLNVQNAKAW----NAF----NLSCKI-----LLTTR---FKQV------ 277
Query: 355 IGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDA 414
D L AA + +L L +
Sbjct: 278 -------TDFLSAA----------TTTHI---------SLDHHSMTLTPDEVKSLLL--- 308
Query: 415 DEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKR 474
++ + Q +L + + +I
Sbjct: 309 ----KYLDCRPQ-------------------------DLPREVLTT-NPRRLS--II--- 333
Query: 475 QCVGSEEAVQARLASIADQWEFLTQ-------KTTEKSLK-LKEANKQRTYIA-AV--KD 523
+ W+ E SL L+ A ++ + +V
Sbjct: 334 ---------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 524 LD--------FWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQA 575
W ++S L +L++K E+ I ++ +
Sbjct: 385 AHIPTILLSLIWFDVIKS--DVMVVVNKLHK-YSLVEKQP-KESTISIP-SIYLELKVKL 439
Query: 576 DSLIDSGQFDASSIQEKRQSINERYERIKN------------------LAAH-RQARLNE 616
++ +SI + Y K + H + E
Sbjct: 440 ENE-----------YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 617 ANTLHQFFRDIADEESWIKEKKLLVGS--DDYGRDLTGVQNLK--KKHKRLEAELASHQP 672
TL FR + + ++++K + + G L +Q LK K +
Sbjct: 489 RMTL---FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY------------ 533
Query: 673 AIQNVQETGEKLM-DVSNLGVPEIEQRLKLLNQAWSELKQLA 713
I + E+L+ + + +P+IE+ L+ +++L ++A
Sbjct: 534 -ICDNDPKYERLVNAILDF-LPKIEE--NLICSKYTDLLRIA 571
Score = 57.2 bits (137), Expect = 4e-08
Identities = 65/458 (14%), Positives = 130/458 (28%), Gaps = 147/458 (32%)
Query: 47 MSLGQTEAALKIQTQLQDL----NQKWTSLQQLTAERATQLGSAHEVQRFH--------- 93
++L + + LQ L + WTS ++ ++ S R
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 94 ----RDVDETKDWIQEKDEALNN--------------NDLGKDLRSVQALQRKHEGLERD 135
+V K W A N + L + +L L D
Sbjct: 247 LLVLLNVQNAKAW-----NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 136 -----LA-ALGDKIRQLDETANRLMQTHPETAEQTYAKQKE---INEEWTQLTAKA--NT 184
L L + + L + T+P ++ + W +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 185 RKEKL--LDSYDLQRFLSDYRDL---------------MSWINS----MMGLVSSDELAN 223
+ L L+ + ++ + L + W + +M +V ++L
Sbjct: 359 IESSLNVLEPAEYRKM---FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHK 413
Query: 224 DVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEA-RE 282
+L+E+ + T + L E++ KL N R
Sbjct: 414 -----YSLVEKQPKEST-----------ISIPSIYL---------ELKVKLENEYALHRS 448
Query: 283 DLEKAWIARRMQLDQCLELQL---FY-------RDCEQAENWMSAREAFLNAEEVDSK-- 330
++ I + D + L FY ++ E E R FL+ ++ K
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 331 -----------TDNVEALIKKHEDF-DKAINAHEEKIGA----LQTLADQLIAADHYAAK 374
N +K ++ + +E + A L + + LI + +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT--- 565
Query: 375 PIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSR 412
LL+ AL+ + + E + +Q R
Sbjct: 566 -------------DLLRIALMAEDEAIFE-EAHKQVQR 589
Score = 52.2 bits (124), Expect = 1e-06
Identities = 52/418 (12%), Positives = 113/418 (27%), Gaps = 131/418 (31%)
Query: 965 EEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQAD--FEALAALDQQIKSFNV----GP 1018
E+ D C ++++ + LS + D + A+ ++ F
Sbjct: 26 EDAFVDNFDCKDVQDM--PKSI-------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 1019 NPYTWFTMEALEDTWRNLQKIIKERDIELAKEATR--------QDENDALRKEF---AKH 1067
F E L ++ L IK + + ++N K +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 1068 ANAFHQWLTETRTSM------MEGTG--SLEQQLEAIKRKAAEVRSRRSDLKKIED---- 1115
Q L E R + + G+G + A +V K++
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWV----------ALDVCLSYKVQCKMDFKIFW 186
Query: 1116 --LGAILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQI-QARNQSGVSEDA 1172
L +L+ L +L ++ N + + N
Sbjct: 187 LNLKNCNSPETVLE----------------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE----FE-------- 1220
E + K +++CL L + V+ + + F
Sbjct: 231 QAELRRLLKS-----------KPYENCLLVLL-N---VQ----NAKAWNAFNLSCKILLT 271
Query: 1221 ----AILDLVDPNRDGHVSLQEYMAFMISKETENVQSS----------EEIEN----AFH 1262
+ D + H+SL + + E +++ E+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 1263 AIAASDRPYVTKEELYANLT----KEMADYCVERMKP------YVD----PKTERGIP 1306
IA S R + + + ++ + + + ++P + P + IP
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IP 388
Score = 32.9 bits (74), Expect = 0.90
Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 30/154 (19%)
Query: 1153 QHNLE---QQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPM 1209
H+++ + Q + + D L F F + K Q KS L D +
Sbjct: 4 HHHMDFETGEHQYQYK-----DILSVFEDAFV---DNFDCKDVQDMPKSILSKEEID-HI 54
Query: 1210 VEEGQPDPEFEAILDLVDPNRDGHV------SLQEYMAFMISK-ETENVQSSEEIENAFH 1262
+ + + ++ V L+ F++S +TE Q S
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM--- 111
Query: 1263 AIAASDRPYVTKEELYANLTKEMADYCVERMKPY 1296
Y+ + + N + A Y V R++PY
Sbjct: 112 --------YIEQRDRLYNDNQVFAKYNVSRLQPY 137
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 69.7 bits (171), Expect = 2e-13
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 14/127 (11%)
Query: 1151 RMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMV 1210
L Q +R SG+ L F+ D+D S L+ EF+ L LG L
Sbjct: 19 ATMEKLRAQCLSRGASGIQG--LAR---FFRQLDRDGSRSLDADEFRQGLAKLGLVL--- 70
Query: 1211 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRP 1270
E E + D N G + L+E++ + ++ I AF + S
Sbjct: 71 ----DQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQA--REAVIAAAFAKLDRSGDG 124
Query: 1271 YVTKEEL 1277
VT ++L
Sbjct: 125 VVTVDDL 131
Score = 53.1 bits (128), Expect = 8e-08
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
S+ + F D+ G + + + + E D LD D
Sbjct: 104 SQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDS 163
Query: 1229 N-RDGHVSLQEYMAFM--ISKETENVQSSEE-IENAFH 1262
+ +DG V+L E+ + +S + + +A+
Sbjct: 164 SEKDGQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQ 201
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 66.2 bits (162), Expect = 2e-12
Identities = 27/158 (17%), Positives = 63/158 (39%), Gaps = 17/158 (10%)
Query: 1164 NQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAIL 1223
++ V + +K + +F D + +G L+ E + L ++ G + IL
Sbjct: 29 HELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASV---------GIKKWDINRIL 79
Query: 1224 DLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 1283
+D N G+++ E+MA + S ++ AF+ I + Y++K ++ + +
Sbjct: 80 QALDINDRGNITYTEFMAGCYRWKNI---ESTFLKAAFNKIDKDEDGYISKSDIVSLVHD 136
Query: 1284 E-MADYCVERMKPYVDP----KTERGIPGALDYIEFTR 1316
+ + + ++ V I + + EF
Sbjct: 137 KVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKD 174
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and
4 calmodulin...; transferase, calcium dependent protein
kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB:
3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 69.3 bits (170), Expect = 4e-12
Identities = 32/153 (20%), Positives = 75/153 (49%), Gaps = 8/153 (5%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYD-LPMVEEGQPDPEFEAILDLV 1226
S++ KE + +F+H DK+ G+L++ E L + + + + Q + E +AIL
Sbjct: 340 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA 399
Query: 1227 DPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE-M 1285
D +R+G++ E++ + + +++ S +++E+AF ++ +EL + + +
Sbjct: 400 DFDRNGYIDYSEFVTVAMDR--KSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHL 457
Query: 1286 ADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
+ M +D + G +D+ EF + +
Sbjct: 458 ESKTWKEMISGIDSNND----GDVDFEEFCKMI 486
Score = 30.1 bits (68), Expect = 5.9
Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 22/133 (16%)
Query: 1085 GTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHLILDNR---YTE--------- 1132
G ++ ++ + + E + + ++ AIL N Y+E
Sbjct: 361 GQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRK 420
Query: 1133 --HSTVGLAQQWDQLDQLGMR--MQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKS 1188
S L + + DQ G L + KE M D +
Sbjct: 421 SLLSKDKLESAFQKFDQDGNGKISVDELASVF---GLDHLESKTWKE---MISGIDSNND 474
Query: 1189 GKLNQTEFKSCLR 1201
G ++ EF ++
Sbjct: 475 GDVDFEEFCKMIQ 487
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 64.5 bits (158), Expect = 4e-12
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 1161 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1220
QA ++ +SE+ + EF F FD D G ++ E + +R LG + E +
Sbjct: 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNP-------TKEELD 59
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMISK--ETENVQSSEEIENAF 1261
AI++ VD + G + +E++ M+ + E +S EE+ N F
Sbjct: 60 AIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCF 102
Score = 51.8 bits (125), Expect = 1e-07
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+ +E + F+ FDK+ G ++ E LRA G E + + E ++ D
Sbjct: 91 KGKSEEELANCFRIFDKNADGFIDIEELGEILRATG-------EHVTEEDIEDLMKDSDK 143
Query: 1229 NRDGHVSLQEYMAFM 1243
N DG + E++ M
Sbjct: 144 NNDGRIDFDEFLKMM 158
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 63.7 bits (156), Expect = 7e-12
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+ ++E F+ FDKDK G +N + +C+R +GY + E + ++
Sbjct: 6 RPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMP-------TEMELIELSQQINM 58
Query: 1229 NRDGHVSLQEYMAFMISK---ETENVQSSEEIENAF 1261
N GHV +++ M K ET ++ +E+ +AF
Sbjct: 59 NLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAF 94
Score = 48.3 bits (116), Expect = 2e-06
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 1158 QQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRA-LGYDLPMVEEGQPD 1216
++ A + L++ F+ FD + G+++ +E + +RA LG+ +
Sbjct: 75 PKLLAETADMIGVKELRD---AFREFDTNGDGEISTSELREAMRALLGHQVG-------H 124
Query: 1217 PEFEAILDLVDPNRDGHVSLQEYMAFM 1243
+ E I+ VD N DG V +E++ M
Sbjct: 125 RDIEEIIRDVDLNGDGRVDFEEFVRMM 151
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME
binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 64.1 bits (157), Expect = 7e-12
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 1158 QQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDP 1217
++ Q + + G++E+ +E F FD D SG ++ E K +RALG++
Sbjct: 12 RRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEP-------KKE 64
Query: 1218 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
E + ++ +D + G + +E++ M +K E S EEI AF
Sbjct: 65 EIKKMISEIDKDGSGTIDFEEFLTMMTAKMGER-DSREEILKAF 107
Score = 53.0 bits (128), Expect = 5e-08
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
D+ +E F+ FD D SG + + + + LG E + E + ++ D N
Sbjct: 97 RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELG-------ENLTEEELQEMIAEADRN 149
Query: 1230 RDGHVSLQEYMAFM 1243
D + E++ M
Sbjct: 150 DDNEIDEDEFIRIM 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 9e-12
Identities = 102/620 (16%), Positives = 192/620 (30%), Gaps = 222/620 (35%)
Query: 39 MNEIAMQLMSL--GQTEAALKIQT-------QLQDLNQKWTSLQQLTAERAT--QLGSAH 87
M+ + + ++L G E L + T QLQ+ K L + T A + +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK--ILPEPTEGFAADDEPTTPA 58
Query: 88 E-VQRF--H--RDVDETKDWIQEKDEALNN--NDL------GKDLRSVQA-LQRKHEGLE 133
E V +F + V+ +K + + D+ LN + G D+ ++ A L ++++
Sbjct: 59 ELVGKFLGYVSSLVEPSK--VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT-- 114
Query: 134 RDLAALGDKIR---QLDETANRLMQTHPETA---------EQTYAK---Q-------KEI 171
L + I+ A R +A Q A Q +E+
Sbjct: 115 -TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 172 NEEWT-------QLTAKANTRKEKLL-DSYDLQRFLSDYRDLMSWIN------------- 210
+ + L + +L+ + D ++ + +++ W+
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 211 ---SM--MGLVSSDELANDVTGAEALLERHQEHRTEIDARTGTFQAFDLFGQQLLQSGHY 265
S +G++ LA+ V A+ L E R+ + TG Q L+
Sbjct: 234 IPISCPLIGVIQ---LAHYVVTAKLLGFTPGELRSYLKGATGH-------SQGLV----- 278
Query: 266 ASVEIQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAR--EAF-- 321
+V I ++ E + + + + + LF ++ R EA+
Sbjct: 279 TAVAIA-----ETDSWESFFVS-------VRKAITV-LF---------FIGVRCYEAYPN 316
Query: 322 --LNAEEVDSKTDN----------VEALIKKH-EDFDKAINAH---EEKIG-ALQTLADQ 364
L ++ +N + L ++ +D+ N+H +++ +L A
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 365 LIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEK 424
L+ + P L L L + ++ G Q+ FS K
Sbjct: 377 LVVSGP----PQS------LYG---LNLTLRKAKAPSGLDQSRIPFSE----------RK 413
Query: 425 LQLATE---------ESYKDPANIQSKHQKHQAFEAELAANADRIQSV-LAM-------G 467
L+ + PA+ +L N + + + G
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPAS--------DLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 468 QNLIDKRQCVGSEEAVQARLASIADQ-------WEFLTQKTTEKSLKLKEANKQRTYIAA 520
+L R GS I D WE TQ T+I
Sbjct: 466 SDL---RVLSGSI------SERIVDCIIRLPVKWETTTQFKA-------------THI-- 501
Query: 521 VKDLDFWLGEVESL--LTSE 538
LDF G L LT
Sbjct: 502 ---LDFGPGGASGLGVLTHR 518
Score = 56.6 bits (136), Expect = 6e-08
Identities = 47/230 (20%), Positives = 81/230 (35%), Gaps = 76/230 (33%)
Query: 1100 AAEVRSRRSDLKKIEDLG-AILEEHLILDN--RYTEHSTVGLAQQWDQLDQLGMRMQHNL 1156
A +V R+D + G +IL+ ++++N T H + G R++ N
Sbjct: 1642 AQDVW-NRADNHFKDTYGFSILD--IVINNPVNLTIHFG----------GEKGKRIRENY 1688
Query: 1157 EQQIQARNQSG--VSEDALKEF-----SMMFKHFDKDKSGKLNQTEF---------KSCL 1200
I G +E KE S F+ +K G L+ T+F K+
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS---EK-GLLSATQFTQPALTLMEKAAF 1744
Query: 1201 RALGYDLPMVEEG-QPDPEFEAILDLVDPNRDGHVSLQEY-----MAFMISKET------ 1248
L +G P A GH SL EY +A ++S E+
Sbjct: 1745 EDLK------SKGLIPADATFA----------GH-SLGEYAALASLADVMSIESLVEVVF 1787
Query: 1249 ------ENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVER 1292
+ +E+ + + + A + + A+ ++E Y VER
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIA-----INPGRVAASFSQEALQYVVER 1832
Score = 53.1 bits (127), Expect = 7e-07
Identities = 64/344 (18%), Positives = 108/344 (31%), Gaps = 122/344 (35%)
Query: 541 GKDLASVQNLIKKHQLV--EADIQAHDDRIKDMNGQADSLIDSGQFDASSIQ-----EKR 593
G DL + V AD H KD G S++D + ++ EK
Sbjct: 1632 GMDLYKTSKAAQD---VWNRAD--NH---FKDTYGF--SILDIVINNPVNLTIHFGGEKG 1681
Query: 594 QSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEES----WIKEKKLLVGSDDYGRD 649
+ I E Y + + ++ + F++I +E S + EK LL
Sbjct: 1682 KRIRENYSAMI-----FETIVDGKLKTEKIFKEI-NEHSTSYTFRSEKGLL--------S 1727
Query: 650 LTGVQNLKKKHKRLEAELASHQPAI--------QNVQETGEKLMDV-----SNLG----- 691
T Q QPA+ ++++ G D S LG
Sbjct: 1728 AT--QFT--------------QPALTLMEKAAFEDLKSKGLIPADATFAGHS-LGEYAAL 1770
Query: 692 -----VPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQL 746
V IE ++++ RG + + V +E S
Sbjct: 1771 ASLADVMSIESLVEVVFY-----------RGMTMQVA---------VPRDELGRS----- 1805
Query: 747 LSVEDYGDTMAAVQ-GLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRC 805
+YG M A+ G + + E V + L+E N++ ++
Sbjct: 1806 ----NYG--MIAINPGRVAASFSQEALQYV----VERVGKRTGWLVEIVNYNVEN----- 1850
Query: 806 QQL----QLK-LDNLMALATKRKTKLMDNSAYLQFMWKADVVES 844
QQ L+ LD + + K + +D LQ + VE
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNFIKLQKIDIIE-LQKSLSLEEVEG 1893
Score = 51.2 bits (122), Expect = 3e-06
Identities = 85/600 (14%), Positives = 159/600 (26%), Gaps = 196/600 (32%)
Query: 425 LQLA---TEESYKDPANIQSKHQKHQA-FEAELAANADRIQSVLAMGQNLIDKRQCVGSE 480
L L+ E P + Q F L + + E
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA---------------DDE 53
Query: 481 EAVQARLAS-----IADQWEFLTQKTTEKSLK--LKEANKQRTYIAAVKDLDFWLGEVES 533
A L ++ E ++ L L E + Y+ ++ +
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF--ENCYLEG--------NDIHA 103
Query: 534 LLTS--EDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQE 591
L +++ L + LIK + + A I A + + +++S + F A
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNY--ITARIMAK----RPFDKKSNSAL----FRAVGEGN 153
Query: 592 KR-------QSINERY--E-R-------------IKNLAAHRQARLNEANTLHQFFRDIA 628
+ Q + Y E R IK A + + F
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 629 DEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQ---PAIQNVQETGEKLM 685
+ W++ DY L S P I +Q
Sbjct: 214 NILEWLENPS-NTPDKDY--------------------LLSIPISCPLIGVIQ------- 245
Query: 686 DVSNLGVPEIEQRLKLLNQAWSELKQL---AANRGQKL------DESLTYQHFLAKVEEE 736
+++ V KLL EL+ A Q L E+ +++ F V
Sbjct: 246 -LAHYVVT-----AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV--R 297
Query: 737 EA-----WI-SEKQQLLS--------VEDYGDT-------MAAVQGLLKKH-DAFETDFS 774
+A +I + +ED + M ++ L ++ + +
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 775 VHRDRCADICSAGNKLIEAKNH-----HADSITQRCQQLQ-LK----LDNLMALATKRKT 824
H + + L+ + S+ L+ K LD ++RK
Sbjct: 358 SHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 825 KLMD---------NSAYLQFMWKA-DVVESWIADKETHVKSEE-----Y----GRDLSTV 865
K + +S L A D++ + +++ Y G DL +
Sbjct: 415 KFSNRFLPVASPFHSHLLV---PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 866 QTLLTKQETFDAGLHAFEHEGIQNITTLK---DQLVASN--H--DQTPAIVKRHGDVIAR 918
++ + I L + H D P G + R
Sbjct: 472 SGSIS-------------ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Score = 47.7 bits (113), Expect = 3e-05
Identities = 93/644 (14%), Positives = 172/644 (26%), Gaps = 260/644 (40%)
Query: 690 LGVPEIEQRLKLLNQAWSELKQL---------AANRGQKLDE------SLT--YQHFLAK 732
L +E L + ++ QL G D+ L + +++
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 733 VEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIE 792
+ E S+ Q V L FE + DI
Sbjct: 71 LVEP----SKVGQFDQV------------LNLCLTEFENCYL----EGNDI--------- 101
Query: 793 AKNHH--ADSITQRCQQLQLKLDNLM------ALATKRKTKLMDNSAYLQFMWKADVVES 844
H A + Q +K L+ + KR NSA +
Sbjct: 102 ----HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR---------- 147
Query: 845 WIADKETHVK----------SEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLK 894
A E + + +++Y +L + L +T+ + I+
Sbjct: 148 --AVGEGNAQLVAIFGGQGNTDDYFEEL---RDL---YQTYHVLVGDL----IKFSAETL 195
Query: 895 DQLVASNHDQTPAIVKRHG-DVIARWQKLLGDSNARKQRLLRMQE---------QFRQIE 944
+L+ + D G +++ W L SN + L Q
Sbjct: 196 SELIRTTLDAEKVF--TQGLNILE-W--LENPSNTPDKDYLLSIPISCPLIGVIQLAH-- 248
Query: 945 DLYLTFAKK------------------------------ASSFNSWFENAEEDLTDP--- 971
Y+ AK S+ S+F + + +T
Sbjct: 249 --YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 972 -VRC---------------NSIEE----------IRALREAH-----AQFQASLSSAQAD 1000
VRC +S+E I L + + + L + +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 1001 FEAL--AALDQQIKSFNV-GPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDEN 1057
+L A K+ V GP P ++L L+K ++ ++ +
Sbjct: 367 EISLVNGA-----KNLVVSGP-P------QSLYGLNLTLRKAKAPSGLDQSRIPFSE--- 411
Query: 1058 DALRK-----EFAKHANAFHQWLTETRTSMMEGTGSLEQQLEAIKRKAAEVRSRRSDLKK 1112
RK F A+ FH + ++ + + + + + D+ +
Sbjct: 412 ---RKLKFSNRFLPVASPFH-------SHLLVPA--SDLINKDLVKNNVSFNA--KDI-Q 456
Query: 1113 I--------EDL----GAILEEH--LILDNRYTEHSTVGLAQQWDQLDQ----------- 1147
I DL G+I E I+ V +W+ Q
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCII------RLPV----KWETTTQFKATHILDFGP 506
Query: 1148 -----LGMRMQHNLE----QQIQARNQSGVSEDALKEFSMMFKH 1182
LG+ N + + I A +D ++ FK
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD---DYG--FKQ 545
Score = 46.6 bits (110), Expect = 6e-05
Identities = 49/325 (15%), Positives = 110/325 (33%), Gaps = 107/325 (32%)
Query: 293 MQLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVE--ALIKKHEDFDKAINA 350
M +D Y+ + +A++ + D+ + +++ + +
Sbjct: 1631 MGMD-------LYKTSK------AAQDVW---NRADNHFKDTYGFSILDIVINNPVNLTI 1674
Query: 351 HEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQF 410
H + I ++Y+A + L ++ KE + E T F
Sbjct: 1675 HFGGEKG------KRIR-ENYSAMIFETIVDGKLKTEKIFKE--------INEHSTSYTF 1719
Query: 411 SRDADEM---ENWIAEKLQ---LATEES-YKDPANIQSKH--QKHQAF------E--AEL 453
+ + + Q E++ ++D ++SK F E A L
Sbjct: 1720 RSEKGLLSATQF-----TQPALTLMEKAAFED---LKSKGLIPADATFAGHSLGEYAA-L 1770
Query: 454 AANAD--RIQSVLAMGQNLIDKR-----QCVGSEEAVQARLASIA------------DQW 494
A+ AD I+S++ ++ R V +E ++ IA +
Sbjct: 1771 ASLADVMSIESLVE----VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 495 EFLTQKTTEKSLKLKE-AN-----KQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQ 548
+++ ++ +++ L E N +Q Y+AA G++ +L + +V
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQ--YVAA--------GDLRAL-------DTVTNVL 1869
Query: 549 NLIK--KHQLVEADIQAHDDRIKDM 571
N IK K ++E + ++
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 44.3 bits (104), Expect = 3e-04
Identities = 43/223 (19%), Positives = 67/223 (30%), Gaps = 72/223 (32%)
Query: 1145 LDQLGMR---MQH-NLEQQIQARNQSGVSEDALKE-FSMMFKHFDKDKSGKLNQTEFKS- 1198
+D R + H +LE + S L+E F+ K + G E +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFN---KILPEPTEGFAADDEPTTP 57
Query: 1199 ---CLRALGYDLPMVEEGQPDP----------EFE-AILDLVDPNRDGH---VSLQEYMA 1241
+ LGY +VE + EFE L+ D H L +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE----GNDIHALAAKLLQ--- 110
Query: 1242 FMISKETENVQSSEEIENAFHAIAASDRPYVTKEE-------------LYA------NLT 1282
+T V++ E I+N A + RP+ K L A N
Sbjct: 111 ---ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 1283 ---KEMAD-YCVERMKPYVDPKTERGIPGALDYIEFTRTLFQN 1321
+E+ D Y + V D I+F+
Sbjct: 168 DYFEELRDLY--QTYHVLVG-----------DLIKFSAETLSE 197
Score = 43.1 bits (101), Expect = 7e-04
Identities = 64/457 (14%), Positives = 119/457 (26%), Gaps = 161/457 (35%)
Query: 757 AAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLM 816
+ + L H + E V QLQ +
Sbjct: 4 YSTRPLTLSHGSLEHVLLV-----------------PTASFF-----IASQLQ---E--- 35
Query: 817 ALATKRKTKLMDNSAYLQF-MWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQE-- 873
QF + E + AD E +E G+ L V +L+ +
Sbjct: 36 -----------------QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 874 TFD----AGLHAFEHEGIQ--NITTLKDQLVASNHDQTPAIVKRHGDVI-----ARWQKL 922
FD L FE+ ++ +I L A + + + ++I AR
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHA----LAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 923 LGDSNARKQRLLRMQE------------Q------FRQIEDLYLTFAKKASSFNSWFENA 964
L R Q F ++ DLY T+ + +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL---IKFS 191
Query: 965 EEDLTDPVRCNSIEE---------IRALREAHAQFQAS-LSSAQADFEALAALDQQIKSF 1014
E L++ +R E + L L S + + Q+ +
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI--QLAHY 249
Query: 1015 NV-----GPNPYTWFTME----------------ALEDTW----RNLQKIIK-------- 1041
V G P + A D+W +++K I
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 1042 --------ERDIELAKEATRQDEN---------DALRKEFAKHANAFHQWLTETRT---S 1081
+ +++ +E + +++ + N + L + S
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 1082 MMEG------TG------SLEQQLEAIKRKAAEVRSR 1106
++ G +G L L K + +SR
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Score = 41.2 bits (96), Expect = 0.003
Identities = 47/290 (16%), Positives = 87/290 (30%), Gaps = 115/290 (39%)
Query: 94 RDVDETKDWIQEKDEALNNNDLGKDLRSVQALQRK-------HEGLERDLAALGDKIRQ- 145
+DV W D + G S+ + H G E+ G +IR+
Sbjct: 1643 QDV-----W-NRADNHFKDT-YG---FSILDIVINNPVNLTIHFGGEK-----GKRIREN 1687
Query: 146 ----------------------LDETANRLMQTHPETA-EQTYAKQKEINEEWTQ----L 178
++E + + T ++TQ L
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT---------QFTQPALTL 1738
Query: 179 TAKANTR--KEKLL---DSYDLQRF-------------------LSD------YRDLMSW 208
KA K K L D+ F + YR +
Sbjct: 1739 MEKAAFEDLKSKGLIPADAT----FAGHSLGEYAALASLADVMSIESLVEVVFYRGM--- 1791
Query: 209 INSMMGLVSSDELANDVTGAEAL----------LERHQEHRTEIDARTGTF-QA--FDLF 255
+M V DEL G A+ E Q + RTG + +++
Sbjct: 1792 --TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 256 GQQLLQSGHYASVE-IQDKLGNLAEAREDLEKAWIARRMQLDQCLELQLF 304
QQ + +G +++ + + L + + D+ + + + + L++ +E LF
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE--LQKSLSLEE-VEGHLF 1896
Score = 37.3 bits (86), Expect = 0.038
Identities = 49/291 (16%), Positives = 83/291 (28%), Gaps = 111/291 (38%)
Query: 826 LMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHE 885
L S Q +W AD H K + YG + + T H
Sbjct: 1635 LYKTSKAAQDVWNR-------ADN--HFK-DTYGFSILDIVINNPVNLTI--------HF 1676
Query: 886 GIQNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFR-QIE 944
G + K + + N+ I + D + +K+ + N FR +
Sbjct: 1677 GGE-----KGKRIRENYS--AMIFETIVDGKLKTEKIFKEINEHSTSYT-----FRSEKG 1724
Query: 945 DLYLT-FA---------------KKASSF--NSWF------EN------AE----EDLTD 970
L T F K ++ F E A+ E L +
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 971 PVRCNSIEEIR--ALREAHAQFQASLS------------SAQADFEALAALDQQIKS--- 1013
V R ++ A + + S +A EAL + +++
Sbjct: 1785 VVF------YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 1014 -------FNV--------GPNPYTWFTMEALEDTWRNLQKIIKERDIELAK 1049
+NV G + AL DT N+ IK + I++ +
Sbjct: 1839 WLVEIVNYNVENQQYVAAG-------DLRAL-DTVTNVLNFIKLQKIDIIE 1881
Score = 36.2 bits (83), Expect = 0.11
Identities = 82/547 (14%), Positives = 150/547 (27%), Gaps = 181/547 (33%)
Query: 342 EDFDKAINAHEEKIGALQTLADQL-IAAD--HYAAKPIDDKRKQVLDRWRLLKEALIEKR 398
E F+K + E A + Y + ++ + D+ +L L
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ--VLNLCL---- 88
Query: 399 SRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANAD 458
+F E Y + +I H A A+L D
Sbjct: 89 ---------TEF-------------------ENCYLEGNDI------H-ALAAKLLQEND 113
Query: 459 ----RIQSVLAMGQNLIDKRQCVGSE----------EAVQARLASIADQWEFLTQKTTEK 504
+ + ++ +N I R AV A + F Q T+
Sbjct: 114 TTLVKTKELI---KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI--FGGQGNTDD 168
Query: 505 SLK-LKEANKQRTYIAAVKDLDFWLGEVESLL-----TSEDSGKDLASVQNLIKKHQLVE 558
+ L++ +TY V DL + L T+ D+ K N+ + +E
Sbjct: 169 YFEELRDL--YQTYHVLVGDL---IKFSAETLSELIRTTLDAEKVFTQGLNI---LEWLE 220
Query: 559 ADIQAHDDRIKDMNGQADS--LIDSGQFDASSIQEKRQSIN--ERYERIKNLAAHRQ--- 611
D + S LI Q + K E +K H Q
Sbjct: 221 NPSNTPDKDY--LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 612 -ARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAE---- 666
A IA+ +SW + + +++K +
Sbjct: 279 TAVA------------IAETDSW----------ESF------FVSVRKA---ITVLFFIG 307
Query: 667 LASHQ--------PAI-QNVQETGEKL---M-DVSNLGVPEIEQRLKLLNQAWSELKQLA 713
+ ++ P+I ++ E E + M +SNL +++ + N KQ+
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 714 A---NRGQKL-----DESLTYQHFLAKVEEEEAWISEKQ--------------QLLSV-- 749
N + L +SL + + +A Q + L V
Sbjct: 368 ISLVNGAKNLVVSGPPQSL--YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 750 ---EDYGDTMAAVQGLLKKHDAFETDFSVHRDRCA----------DICSAGNKLIEAKNH 796
+ L+ K D + + S + D+ + E
Sbjct: 426 PFHSHL---LVPASDLINK-DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER--- 478
Query: 797 HADSITQ 803
D I +
Sbjct: 479 IVDCIIR 485
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding,
EF-hand superfamily, S genomics, protein structure
initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A
Length = 272
Score = 66.2 bits (161), Expect = 9e-12
Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 19/174 (10%)
Query: 1164 NQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDP---EFE 1220
+ S + F +++HFD D +G + E R + L ++ + +
Sbjct: 1 SDSAFANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKK 60
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMIS---------KETENVQSSEEIENAFHAIAASDRPY 1271
+ + D DG + ++E ++ + + +S E + A Y
Sbjct: 61 SFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGY 120
Query: 1272 VTKEELYANLTKEMADYCVERMKPYVDPKTERGIP-------GALDYIEFTRTL 1318
++ EL L + + +D T+ + G LD + R L
Sbjct: 121 ISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARIL 174
Score = 57.4 bits (138), Expect = 7e-09
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 18/167 (10%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL-PMVEEGQPDPEFEAILDLVDP 1228
D EF +++ +D D SG ++ E K+ L+ L + + D +A++ + D
Sbjct: 100 LDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDK 159
Query: 1229 NRDGHVSLQEYMAFMISKETENVQ----------SSEEIENAFHAIAASDRPYVTKEELY 1278
N+DG + L + + +E +Q + E F S + E+
Sbjct: 160 NKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVD 219
Query: 1279 ANLTKEMADYCVERMKPYVDPKTERGIP-------GALDYIEFTRTL 1318
+ M +D E + G + E L
Sbjct: 220 GFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCL 266
Score = 53.5 bits (128), Expect = 1e-07
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 1152 MQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL-PMV 1210
+ +Q + + + ++F +F H+D ++G L E ++ + + P +
Sbjct: 174 LALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSI 233
Query: 1211 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 1247
G D E +L D N+DG + E + K
Sbjct: 234 SGGDLDKFRECLLTHCDMNKDGKIQKSELALCLGLKH 270
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus
norvegicus} PDB: 2g9b_A
Length = 263
Score = 66.0 bits (161), Expect = 9e-12
Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 11/160 (6%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL-PMVEEGQPDPEFEAILDLVDP 1228
+ +EF ++ +D D SG + E K+ L+ L V++ + + +L L D
Sbjct: 99 LKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDS 158
Query: 1229 NRDGHVSLQEYMAFMISKETENVQ------SSEEIENAFHAIAASDRPYVTKEELYANLT 1282
N DG + L E + +E ++ +E AF Y+ + EL A L
Sbjct: 159 NNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLK 218
Query: 1283 ----KEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
K + + + Y G L + L
Sbjct: 219 DLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALIL 258
Score = 64.9 bits (158), Expect = 2e-11
Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 15/172 (8%)
Query: 1161 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1220
A + S +F ++ HFD D SG L E ++ ++ L + PE +
Sbjct: 3 MAESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKK-AGLELSPEMK 61
Query: 1221 AILDLVDPNRDGHVSLQEYMAFM-------ISKETENVQSSEEIENAFHAIAASDRPYVT 1273
+D DG + + E + + + ++S EE + ++
Sbjct: 62 TFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIE 121
Query: 1274 KEELYANLTKEMADYCVERMKPYVDPKTERGIP-------GALDYIEFTRTL 1318
EEL L + + T+ + G L+ E R L
Sbjct: 122 TEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLL 173
Score = 49.5 bits (118), Expect = 3e-06
Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 1156 LEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQP 1215
L Q + + KEF+ F+ +D+D +G +++ E + L+ L +E
Sbjct: 173 LPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLC--EKNKQELDI 230
Query: 1216 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 1247
+ +++ + G + + + + +
Sbjct: 231 NNISTYKKNIMALSDGGKLYRTDLALILSAGD 262
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 62.5 bits (153), Expect = 1e-11
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+E+ +E F FD D +G ++ E K +RALG++ E + ++ +D
Sbjct: 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEP-------KKEEIKKMISEIDK 53
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
G ++ +++ M K +E + EEI AF + ++ + L
Sbjct: 54 EGTGKMNFGDFLTVMTQKMSEK-DTKEEILKAFKLFDDDETGKISFKNL 101
Score = 51.3 bits (124), Expect = 1e-07
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
+D +E FK FD D++GK++ K + LG E D E + ++D D +
Sbjct: 75 KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELG-------ENLTDEELQEMIDEADRD 127
Query: 1230 RDGHVSLQEYMAFM 1243
DG VS QE++ M
Sbjct: 128 GDGEVSEQEFLRIM 141
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A {Plasmodium
falciparum K1}
Length = 197
Score = 63.8 bits (156), Expect = 2e-11
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+ + +F D D SG L+ E L+ +GY P+ +L +D
Sbjct: 52 CDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQK-------IPPDIHQVLRDIDS 104
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
N G + +++A I K+T E F ++ EEL
Sbjct: 105 NASGQIHYTDFLAATIDKQTY--LKKEVCLIPFKFFDIDGNGKISVEEL 151
Score = 50.3 bits (121), Expect = 7e-07
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
FK FD D +GK++ E K + P++++ +++L VD N DG + E+
Sbjct: 135 FKFFDIDGNGKISVEELKRIFGRDDIENPLIDK-----AIDSLLQEVDLNGDGEIDFHEF 189
Query: 1240 MAFMISKE 1247
M M K+
Sbjct: 190 MLMMSKKK 197
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 62.2 bits (152), Expect = 2e-11
Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
+ +FK D + G ++ E K+ + + + I +D + +G
Sbjct: 2 AEA---LFKEIDVNGDGAVSYEEVKAFVSKKRAIK-------NEQLLQLIFKSIDADGNG 51
Query: 1233 HVSLQEYMAFMISKETENVQSSEE-IENAF 1261
+ E+ F S + +++ + ++ +
Sbjct: 52 EIDQNEFAKFYGSIQGQDLSDDKIGLKVLY 81
Score = 49.5 bits (119), Expect = 4e-07
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+ LK ++K D D GKL + E S + G + + + D
Sbjct: 73 DKIGLKV---LYKLMDVDGDGKLTKEEVTSFFKKHGIE-----------KVAEQVMKADA 118
Query: 1229 NRDGHVSLQEYMAFMI 1244
N DG+++L+E++ F +
Sbjct: 119 NGDGYITLEEFLEFSL 134
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 61.8 bits (151), Expect = 3e-11
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
E+ +E F FD + G L+ E K ++ALG++L P E ++D D
Sbjct: 18 LEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFEL-------PKREILDLIDEYDS 70
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
+ ++ M K + +EI+ AF
Sbjct: 71 EGRHLMKYDDFYIVMGEKILKR-DPLDEIKRAF 102
Score = 51.4 bits (124), Expect = 2e-07
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
D L E F+ FD D +GK++ + + LG E D E A+++ D +
Sbjct: 92 RDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELG-------ETLTDEELRAMIEEFDLD 144
Query: 1230 RDGHVSLQEYMAFM 1243
DG ++ E++A
Sbjct: 145 GDGEINENEFIAIC 158
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 66.3 bits (162), Expect = 4e-11
Identities = 32/150 (21%), Positives = 65/150 (43%), Gaps = 8/150 (5%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALG-YDLPMVEEGQPDPEFEAILDLVD 1227
+ + KE + +FK DK+ G+L++ E L + + E + E + IL VD
Sbjct: 350 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVD 409
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE-MA 1286
+++G++ E+++ + K + + S E + AF+ +TKEEL ++
Sbjct: 410 FDKNGYIEYSEFISVCMDK--QILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTSIS 467
Query: 1287 DYCVERMKPYVDPKTERGIPGALDYIEFTR 1316
+ + D + +D+ EF
Sbjct: 468 EKTWNDVLGEADQNKD----NMIDFDEFVS 493
Score = 51.2 bits (123), Expect = 2e-06
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 1178 MMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1237
F FD DKSGK+ + E + + + +L D N+D +
Sbjct: 439 RAFNLFDTDKSGKITKEELANLFG---------LTSISEKTWNDVLGEADQNKDNMIDFD 489
Query: 1238 EYMAFM 1243
E+++ M
Sbjct: 490 EFVSMM 495
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase,
transferase, calcium-bindin binding, EF hand, bumped
kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii}
PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A*
3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A*
3ku2_A* 3hx4_A*
Length = 484
Score = 66.3 bits (162), Expect = 4e-11
Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRAL----GYDLPMVEEGQPDPEFEAIL 1223
S+D KE + +F DK+ G+L++ E + L G D M++ + E + +L
Sbjct: 329 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 388
Query: 1224 DLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANL-T 1282
D VD +++G++ E++ + + + + S E +E AF + + ++ EL
Sbjct: 389 DAVDFDKNGYIEYSEFVTVAMDR--KTLLSRERLERAFRMFDSDNSGKISSTELATIFGV 446
Query: 1283 KEMADYCVERMKPYVDPKTERGIPGALDYIEFTR 1316
++ + + VD + G +D+ EF +
Sbjct: 447 SDVDSETWKSVLSEVDKNND----GEVDFDEFQQ 476
Score = 51.2 bits (123), Expect = 2e-06
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 1178 MMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1237
F+ FD D SGK++ TE + D + +L VD N DG V
Sbjct: 422 RAFRMFDSDNSGKISSTELATIFGVSDVDSETWKS---------VLSEVDKNNDGEVDFD 472
Query: 1238 EYMAFMISKETEN 1250
E+ ++ K N
Sbjct: 473 EFQQMLL-KLCGN 484
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 59.2 bits (144), Expect = 5e-11
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDP-EFEAILDLVD 1227
+ + + +FK FD + GK++ +E L+ L G P E ++ +D
Sbjct: 6 TPQDIADRERIFKRFDTNGDGKISSSELGDALKTL---------GSVTPDEVRRMMAEID 56
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
+ DG +S E+ F + +++ F
Sbjct: 57 TDGDGFISFDEFTDFARANR----GLVKDVSKIF 86
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom consortium,
SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB:
3o4y_A
Length = 191
Score = 62.3 bits (152), Expect = 5e-11
Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
++ +++ F D+D G + + + K L G + F+ +LD +D
Sbjct: 47 NDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGL--------KLPYNFDLLLDQIDS 98
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
+ G + E++A + ++ S + I AF + +T EL
Sbjct: 99 DGSGKIDYTEFIAAALDRKQL---SKKLIYCAFRVFDVDNDGEITTAEL 144
Score = 51.5 bits (124), Expect = 2e-07
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 1164 NQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAIL 1223
++ +S+ + F+ FD D G++ E L + + + ++
Sbjct: 115 DRKQLSKKLIYC---AFRVFDVDNDGEITTAELAHILYNGNKKGNITQR--DVNRVKRMI 169
Query: 1224 DLVDPNRDGHVSLQEYMAFM 1243
VD N DG + E+ M
Sbjct: 170 RDVDKNNDGKIDFHEFSEMM 189
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 61.5 bits (150), Expect = 9e-11
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
F+ D G+L+ E ++ L + GY + + F+A++ D R G + +Y
Sbjct: 99 FRKRDSSGDGRLDSNEVRAALLSSGYQV-------SEQTFQALMRKFDRQRRGSLGFDDY 151
Query: 1240 MAFMISKET 1248
+ I
Sbjct: 152 VELSIFVCR 160
Score = 56.5 bits (137), Expect = 5e-09
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 1153 QHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEE 1212
H++ S + +E F+ D D SG ++ E + L + G
Sbjct: 6 HHHMPTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPF----- 60
Query: 1213 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
E +L + D N G ++ E+ + F
Sbjct: 61 --SLATTEKLLHMYDKNHSGEITFDEFKDLHHFI--------LSMREGF 99
Score = 31.9 bits (73), Expect = 0.97
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 14/69 (20%)
Query: 1175 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
F + + FD+ + G L ++ + D R G V
Sbjct: 130 TFQALMRKFDRQRRGSLGFDDYVELSIFV------------CRVRNVF-AFYDRERTGQV 176
Query: 1235 SLQEYMAFM 1243
+ + F+
Sbjct: 177 TFT-FDTFI 184
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 61.4 bits (150), Expect = 9e-11
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
D+ +E F+ FDKD +G ++ E + + LG E D E + ++ D +
Sbjct: 80 TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLG-------EKLTDEEVDEMIREADID 132
Query: 1230 RDGHVSLQEYMAFMISK--ETENVQSSEEIENAF 1261
DG V+ +E++ M +K E I N
Sbjct: 133 GDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKI 166
Score = 60.6 bits (148), Expect = 2e-10
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-------TEAELQDMINEVDA 58
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
+ +G + E++ M K + S EEI AF
Sbjct: 59 DGNGTIDFPEFLTMMARKMKDT-DSEEEIREAF 90
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 59.0 bits (143), Expect = 1e-10
Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 1158 QQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDP 1217
+ I AR V+ + F++FD K+ +++ EF++ L D
Sbjct: 9 RDILARLHKAVTSH-YHAITQEFENFDTMKTNTISREEFRAICNRRVQIL-------TDE 60
Query: 1218 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEE 1256
+F+ + + + N G + ++++ S+ ++ +
Sbjct: 61 QFDRLWNEMPVNAKGRLKYPDFLSRFSSETAATPMATGD 99
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding
Pro; NMR {Glycine max}
Length = 92
Score = 58.8 bits (143), Expect = 1e-10
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+ DA +E FK FDKD++G ++ +E + + LG E D E E ++ D
Sbjct: 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLG-------EKLTDEEVEQMIKEAD 55
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSS-EEIENAFHA 1263
+ DG V+ +E++ M++ + + F +
Sbjct: 56 LDGDGQVNYEEFVKMMMTVRGGGGGNGWSRLRRKFSS 92
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand;
1.75A {Physarum polycephalum}
Length = 142
Score = 59.4 bits (145), Expect = 2e-10
Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
+D + EF F+ FD +++G + + ++ L+ G + F + + D
Sbjct: 2 DDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRV-------EPAAFNEMFNEADAT 54
Query: 1230 RDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
+G + E+++ M + + S + + AF
Sbjct: 55 GNGKIQFPEFLSMMGRRMKQT-TSEDILRQAF 85
Score = 49.4 bits (119), Expect = 6e-07
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
+ F+ FD + +G + + + L LG L EF L + +
Sbjct: 75 TTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLK-------PHEFAEFLGITETE 127
Query: 1230 RDGHVSLQEYMAFMIS 1245
G + ++ M +
Sbjct: 128 -KGQIRYDNFINTMFT 142
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin
chimera; calcium sensor, fluorescent protein; HET: CRO;
1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A*
3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A*
3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 63.4 bits (154), Expect = 2e-10
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 1158 QQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDP 1217
+++ + ++E+ + EF F FDKD G + E + +R+LG + +
Sbjct: 296 HKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-------TEA 348
Query: 1218 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
E + +++ VD + +G + E++ M K + S EEI AF Y++ EL
Sbjct: 349 ELQDMINEVDADGNGTIDFPEFLTMMARKMKDT-DSEEEIREAFRVFDKDGNGYISAAEL 407
Score = 56.1 bits (135), Expect = 4e-08
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
D+ +E F+ FDKD +G ++ E + + LG L D E + ++ D +
Sbjct: 381 TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL-------TDEEVDEMIREADID 433
Query: 1230 RDGHVSLQEYMAFMISK 1246
DG V+ +E++ M +K
Sbjct: 434 GDGQVNYEEFVQMMTAK 450
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 62.5 bits (152), Expect = 2e-10
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 15/115 (13%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
SE+ +F SGK + + K L + P+ + + +V+
Sbjct: 117 SEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTI-------PEGPLKKLFVMVEN 169
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 1283
+ G +S +A + F I + ++++E + +
Sbjct: 170 DTKGRMSYITLVAVANDL--------AALVADFRKIDTNSNGTLSRKEFREHFVR 216
Score = 59.1 bits (143), Expect = 3e-09
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
L F+ D + +G L++ EF+ LG+D +A+ D +
Sbjct: 187 LAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDK--------KSVQDALFRYADEDESD 238
Query: 1233 HVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
V EY+ + + + ++KEE+
Sbjct: 239 DVGFSEYVHLGLCL--------LVLRILYAFADFDKSGQLSKEEV 275
Score = 51.3 bits (123), Expect = 1e-06
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 1172 ALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRD 1231
L +++ D DKSG+L++ E + L +FE +VD +
Sbjct: 251 CLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPE------SARKKFEHQFSVVDVDDS 304
Query: 1232 GHVSLQEYMAFMISKETEN 1250
+S QE++ ++ ++
Sbjct: 305 KSLSYQEFVMLVLLMFHDD 323
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 59.8 bits (145), Expect = 3e-10
Identities = 16/126 (12%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 1171 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEG--------QPDPEFEAI 1222
+ + + F FD+D +G +++++F +A+ + + + ++ +
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 1223 LDLVDPNRDGHVSLQEYMAFMISKETENVQSSEE-----IENAFHAIAASDRPYVTKEEL 1277
+ D + D ++ +E++ + + + E + A VT +
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Query: 1278 YANLTK 1283
LT
Sbjct: 121 ARALTA 126
Score = 50.1 bits (120), Expect = 4e-07
Identities = 13/86 (15%), Positives = 21/86 (24%), Gaps = 9/86 (10%)
Query: 1158 QQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDP 1217
+ +E A D D G + + L A G +
Sbjct: 82 VKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGVP---------ED 132
Query: 1218 EFEAILDLVDPNRDGHVSLQEYMAFM 1243
+D + DG V E +
Sbjct: 133 LARQAAAALDTDGDGKVGETEIVPAF 158
Score = 46.7 bits (111), Expect = 8e-06
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 4/123 (3%)
Query: 1142 WDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLR 1201
M ++ + A + + D+D ++ + EF +
Sbjct: 23 RSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVTGAV 82
Query: 1202 ALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
D P P A L + D + DG V++ + + + + A
Sbjct: 83 KRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGV----PEDLARQAA 138
Query: 1262 HAI 1264
A+
Sbjct: 139 AAL 141
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 56.7 bits (138), Expect = 3e-10
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 1175 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
+F+ FDK+K GKL+ EF+ A + + +D + +G +
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYF-------TQEDIVKFFEEIDVDGNGEL 54
Query: 1235 SLQEYMAFMISK 1246
+ E+ + +
Sbjct: 55 NADEFTSCIEKM 66
Score = 27.1 bits (61), Expect = 6.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLR 1201
++ F+ D D +G+LN EF SC+
Sbjct: 37 EDIVKFFEEIDVDGNGELNADEFTSCIE 64
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 56.7 bits (138), Expect = 3e-10
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
SE+ +E F FD +K+G ++ E K +RALG+D+ PE +++ D
Sbjct: 2 SEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDV-------KKPEILELMNEYDR 54
Query: 1229 NRDGHVSLQEYMAFMISK 1246
+G++ +++ M K
Sbjct: 55 EGNGYIGFDDFLDIMTEK 72
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase,
transferase, calcium-bindin binding, bumped kinase
inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum}
PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 63.2 bits (154), Expect = 3e-10
Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 16/159 (10%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYD-------LPMVEEGQPDPEFE 1220
+ D K+ + +F+ D + G L++ E L E + + +
Sbjct: 325 TTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQID 384
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYAN 1280
+++ L+D + G + E++A I + + S E +E AF ++ +EL+
Sbjct: 385 SLMPLLDMDGSGSIEYSEFIASAIDR--TILLSRERMERAFKMFDKDGSGKISTKELFKL 442
Query: 1281 LTKEMADYCVERMKPY---VDPKTERGIPGALDYIEFTR 1316
++ + +E ++ VD + G +D+ EF
Sbjct: 443 FSQADSSIQMEELESIIEQVDNNKD----GEVDFNEFVE 477
Score = 49.3 bits (118), Expect = 6e-06
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 1178 MMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1237
FK FDKD SGK++ E + E E+I++ VD N+DG V
Sbjct: 421 RAFKMFDKDGSGKISTKELFKLFSQADSSIQ-------MEELESIIEQVDNNKDGEVDFN 473
Query: 1238 EYMAFM 1243
E++ +
Sbjct: 474 EFVEML 479
Score = 30.8 bits (70), Expect = 3.7
Identities = 8/44 (18%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 1158 QQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLR 1201
++ ++ S + + L+ + + D +K G+++ EF L+
Sbjct: 440 FKLFSQADSSIQMEELES---IIEQVDNNKDGEVDFNEFVEMLQ 480
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 58.7 bits (143), Expect = 4e-10
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNP-------TEAELQDMINEVDA 57
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
+ +G + E+++ M K E S EE+ AF
Sbjct: 58 DGNGTIDFPEFLSLMARKMKEQ-DSEEELIEAF 89
Score = 55.2 bits (134), Expect = 6e-09
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
+D+ +E FK FD+D +G ++ E + + LG L D E + ++ D +
Sbjct: 79 QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL-------TDDEVDEMIREADID 131
Query: 1230 RDGHVSLQEYMAFMISK 1246
DGH++ +E++ M+SK
Sbjct: 132 GDGHINYEEFVRMMVSK 148
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 59.2 bits (144), Expect = 5e-10
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLP--MVEEGQ--PDPEFEAILD 1224
+ + KE + +F+ D + G+L++ E R L + + + E + IL
Sbjct: 35 TLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQ 94
Query: 1225 LVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 1284
VD +R+G++ E++ + K+ S E + AF + +T EEL
Sbjct: 95 SVDFDRNGYIEYSEFVTVCMDKQLL--LSRERLLAAFQQFDSDGSGKITNEELGRLFGVT 152
Query: 1285 -MADYCVERM 1293
+ D ++
Sbjct: 153 EVDDETWHQV 162
Score = 48.1 bits (115), Expect = 4e-06
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
S + L F+ FD D SGK+ E D + +L D
Sbjct: 121 SRERLLA---AFQQFDSDGSGKITNEELGRL---------FGVTEVDDETWHQVLQECDK 168
Query: 1229 NRDGHVSLQEYMAFM 1243
N DG V +E++ M
Sbjct: 169 NNDGEVDFEEFVEMM 183
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like
domain, EF calcium binding protein, transferase; 2.00A
{Arabidopsis thaliana}
Length = 166
Score = 58.7 bits (143), Expect = 6e-10
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
SE+ + MF D DKSG++ E K+ L+ +G +L + E ++ D
Sbjct: 22 SEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANL-------KESEILDLMQAADV 74
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
+ G + +E++A + + + AF Y+T +EL
Sbjct: 75 DNSGTIDYKEFIAATLHLNKIE--REDHLFAAFTYFDKDGSGYITPDEL 121
Score = 49.4 bits (119), Expect = 7e-07
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
ED L F +FDKD SG + E + G + D E ++ VD
Sbjct: 97 REDHLFA---AFTYFDKDGSGYITPDELQQACEEFGVE---------DVRIEELMRDVDQ 144
Query: 1229 NRDGHVSLQEYMAFM 1243
+ DG + E++A M
Sbjct: 145 DNDGRIDYNEFVAMM 159
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 55.2 bits (134), Expect = 9e-10
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+ L++ + F+ FD+D G + E + + LG + P E +A++ D
Sbjct: 1 ARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLG-------QPLPQEELDAMIREADV 53
Query: 1229 NRDGHVSLQEYMAFMISK 1246
++DG V+ +E+ + +
Sbjct: 54 DQDGRVNYEEFARMLAQE 71
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 55.6 bits (135), Expect = 9e-10
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
V +D +E FK FD + G ++ EFK ++ +G EE D E E + D
Sbjct: 2 VRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVG------EEPLTDAEVEEAMKEAD 55
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQS 1253
+ +G + + E+M + + +S
Sbjct: 56 EDGNGVIDIPEFMDLIKKSKNALKES 81
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Length = 78
Score = 55.3 bits (134), Expect = 1e-09
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
D ++ +FK FD + GK++ +E LR LG E + ++ +D +
Sbjct: 2 ADDMER---IFKRFDTNGDGKISLSELTDALRTLG--------STSADEVQRMMAEIDTD 50
Query: 1230 RDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
DG + E+++F + +++ F
Sbjct: 51 GDGFIDFNEFISFCNANPGL----MKDVAKVF 78
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 55.8 bits (135), Expect = 1e-09
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 1153 QHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEE 1212
H+ ++ + + L +F D ++SG+L + EF++ L
Sbjct: 6 HHSSGRENLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTEL--------- 56
Query: 1213 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 1243
+ EA+ +D +RDG ++ QE+
Sbjct: 57 RVRPADAEAVFQRLDADRDGAITFQEFARGF 87
Score = 29.2 bits (66), Expect = 1.8
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRA 1202
V + +F+ D D+ G + EF
Sbjct: 57 RVRPADAEA---VFQRLDADRDGAITFQEFARGFLG 89
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 57.1 bits (139), Expect = 1e-09
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+E+ + EF F FDKD SG ++ +E + +R+LG + E +++ +D
Sbjct: 6 TEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSP-------SEAEVADLMNEIDV 58
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
+ + + E++A M + N S +E+ AF
Sbjct: 59 DGNHAIEFSEFLALMSRQLKCN-DSEQELLEAF 90
Score = 49.0 bits (118), Expect = 9e-07
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
D+ +E FK FDK+ G ++ E K L ++G E D E + +L V +
Sbjct: 80 NDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIG-------EKLTDAEVDEMLREVS-D 131
Query: 1230 RDGHVSLQEYMAFM 1243
G ++++++ A +
Sbjct: 132 GSGEINIKQFAALL 145
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 57.6 bits (140), Expect = 1e-09
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 1169 SEDALKEFSMMFKHFDKD-KSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+E+ EF F F + G ++ E +R LG + E + ++D VD
Sbjct: 13 TEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNP-------TPEELQEMIDEVD 65
Query: 1228 PNRDGHVSLQEYMAFMISK--ETENVQSSEEIENAF 1261
+ G V E++ M+ + +S EE+ + F
Sbjct: 66 EDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLF 101
Score = 51.0 bits (123), Expect = 2e-07
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 1166 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1225
G SE+ L + +F+ FDK+ G ++ E K L+A G E + + E ++
Sbjct: 90 KGKSEEELSD---LFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKD 139
Query: 1226 VDPNRDGHVSLQEYMAFMISKE 1247
D N DG + E++ FM E
Sbjct: 140 GDKNNDGRIDYDEFLEFMKGVE 161
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 58.0 bits (141), Expect = 1e-09
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
SE+ + +FK D D SG + E K L+ +G +L + E + ++D D
Sbjct: 5 SEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSEL-------MESEIKDLMDAADI 57
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
++ G + E++A + E + +AF
Sbjct: 58 DKSGTIDYGEFIAATVHLNKLE--REENLVSAF 88
Score = 55.3 bits (134), Expect = 1e-08
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
E+ L F +FDKD SG + E + + G D D + ++ +D
Sbjct: 80 REENLVS---AFSYFDKDGSGYITLDEIQQACKDFGLD---------DIHIDDMIKEIDQ 127
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAA 1266
+ DG + E+ A M ++ + + A
Sbjct: 128 DNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDA 165
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 57.8 bits (140), Expect = 1e-09
Identities = 15/123 (12%), Positives = 39/123 (31%), Gaps = 14/123 (11%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL---PMVEEGQ-----PDPEFE 1220
+ A F +D D +G L + +F+ + + E Q F+
Sbjct: 2 TAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFD 61
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMISKETENVQSS------EEIENAFHAIAASDRPYVTK 1274
+ DG ++ ++++ + E ++S ++ + +
Sbjct: 62 YLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINA 121
Query: 1275 EEL 1277
+E
Sbjct: 122 DEF 124
Score = 54.0 bits (130), Expect = 3e-08
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 1157 EQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPD 1216
E I + ++ + + DK+ G++N EF + L ALG
Sbjct: 85 ENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGMS---------K 135
Query: 1217 PEFEAILDLVDPNRDGHVSLQEYMAFM 1243
E + VD N +G +SL E + +
Sbjct: 136 AEAAEAFNQVDTNGNGELSLDELLTAV 162
Score = 43.6 bits (103), Expect = 8e-05
Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 5/124 (4%)
Query: 1142 WDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLR 1201
++ + + A + F + K G L + +F
Sbjct: 26 RADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTE 85
Query: 1202 ALGYDL-PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENA 1260
L ++ P + I+ + D N DG ++ E+ A++ + S E A
Sbjct: 86 NLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGM----SKAEAAEA 141
Query: 1261 FHAI 1264
F+ +
Sbjct: 142 FNQV 145
Score = 31.3 bits (71), Expect = 1.5
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE 1218
G+S+ E F D + +G+L+ E + +R + G+ D E
Sbjct: 132 GMSKAEAAE---AFNQVDTNGNGELSLDELLTAVRDFHF-------GRLDVE 173
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 57.6 bits (140), Expect = 2e-09
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
+ ++ +F+ +D+D SG +++ E K L GY L D + ++ D G
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRL-------SDQFHDILIRKFDRQGRG 125
Query: 1233 HVSLQEYMAFMISKET 1248
++ +++ I +
Sbjct: 126 QIAFDDFIQGCIVLQR 141
Score = 47.6 bits (114), Expect = 3e-06
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 14/88 (15%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+F+ DKD+SG ++ TE + L + P +I+ + D
Sbjct: 7 SFLWNVFQRVDKDRSGVISDTELQQALSNGTWT-PFNPV-----TVRSIISMFDRENKAG 60
Query: 1234 VSLQEYMAFMISKETENVQSSEEIENAF 1261
V+ E+ + +N F
Sbjct: 61 VNFSEFTGVWKYI--------TDWQNVF 80
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 54.8 bits (133), Expect = 2e-09
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
SE+ + +FK D D SG + E K L+ +G +L + E + ++D D
Sbjct: 18 SEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSEL-------MESEIKDLMDAADI 70
Query: 1229 NRDGHVSLQEYMAFMI 1244
++ G + E++A +
Sbjct: 71 DKSGTIDYGEFIAATV 86
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 54.9 bits (133), Expect = 2e-09
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 1158 QQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDP 1217
QA ++ +SE+ + EF F FD D G ++ E + +R LG +
Sbjct: 4 TDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNP-------TKE 56
Query: 1218 EFEAILDLVDPNRDGHVSLQEYMAFMISKETEN 1250
E +AI++ VD + G + +E++ M+ + E+
Sbjct: 57 ELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKED 89
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 56.8 bits (138), Expect = 2e-09
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 1169 SEDALKEFSMMFKHFDK-DKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
S + +K F+ F+ + SG+++ + L LG ++D D
Sbjct: 8 SSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQ-------TKSTIRQLIDEFD 60
Query: 1228 PNRDGHVSLQEYMAFMISKETENVQSS---EEIENAF 1261
P +G + + E V +E+ AF
Sbjct: 61 PFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAF 97
Score = 52.2 bits (126), Expect = 8e-08
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
E +E F+ +DK+ +G ++ + L L E + +A++D +D +
Sbjct: 87 EQMQQELREAFRLYDKEGNGYISTDVMREILAELD-------ETLSSEDLDAMIDEIDAD 139
Query: 1230 RDGHVSLQEYMAFM 1243
G V +E+M M
Sbjct: 140 GSGTVDFEEFMGVM 153
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured
protein, CAM-like; NMR {Entamoeba histolytica} PDB:
2lc5_A
Length = 85
Score = 54.6 bits (132), Expect = 2e-09
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 1162 ARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEA 1221
+ + ++ + +E+ F+ FDKD KL E + +RALG + +
Sbjct: 2 SEQKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANP-------TKQKISE 54
Query: 1222 ILDLVDPNRDGHVSLQEYMAFMISK 1246
I+ D + G + ++ M+
Sbjct: 55 IVKDYDKDNSGKFDQETFLTIMLEY 79
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 57.5 bits (139), Expect = 3e-09
Identities = 12/103 (11%), Positives = 24/103 (23%), Gaps = 2/103 (1%)
Query: 1163 RNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPD--PEFE 1220
N + L F FD D GK+ E + + +E
Sbjct: 25 FNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVR 84
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHA 1263
+ ++++ + E + A
Sbjct: 85 VFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIA 127
Score = 52.5 bits (126), Expect = 1e-07
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 1149 GMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLP 1208
R+ E++ + R + + + + D D G ++ E K+ ++A
Sbjct: 106 ANRVFAEAERERERRGEPSLIALLSNSY---YDVLDDDGDGTVDVDELKTMMKAF----- 157
Query: 1209 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 1243
P + D ++ G + E +
Sbjct: 158 ----DVPQEAAYTFFEKADTDKSGKLERTELVHLF 188
Score = 31.7 bits (72), Expect = 1.1
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYD 1206
V ++A F+ D DKSGKL +TE R +
Sbjct: 158 DVPQEAAYT---FFEKADTDKSGKLERTELVHLFRKFWME 194
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 57.1 bits (138), Expect = 3e-09
Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 12/140 (8%)
Query: 1109 DLKKIEDLGAILEEHLILDNRYTEHSTVGLAQQWDQLDQLG-----MRMQHNLEQQIQAR 1163
+ E + + + L E + + DQL + +
Sbjct: 32 SREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLK 91
Query: 1164 NQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAIL 1223
+ A+ + +M+ D DK G ++ EFK+ L+A+G D +
Sbjct: 92 MKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVG-------PDLTDDKAITCF 144
Query: 1224 DLVDPNRDGHVSLQEYMAFM 1243
+ +D N++G +S E++ +
Sbjct: 145 NTLDFNKNGQISRDEFLVTV 164
Score = 56.7 bits (137), Expect = 4e-09
Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 7/119 (5%)
Query: 1166 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEG--QPDPEFEAIL 1223
L++ + D G +++ +++ + + E + EF +
Sbjct: 6 ESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVA 65
Query: 1224 DLVDPNRDGHVSLQEYMAFMISK-----ETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
D + +S++E E + + + I YV+ E
Sbjct: 66 DQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEF 124
Score = 45.5 bits (108), Expect = 2e-05
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
E+ +EF + +++ E + E+ + + D +D +
Sbjct: 55 EETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTD 114
Query: 1230 RDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
+DG+VSL E+ AF+ + + ++ F
Sbjct: 115 KDGYVSLPEFKAFL--QAVGPDLTDDKAITCF 144
Score = 30.1 bits (68), Expect = 3.0
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYD 1206
+++D F D +K+G++++ EF + +
Sbjct: 134 DLTDDKAIT---CFNTLDFNKNGQISRDEFLVTVNDFLFG 170
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 53.3 bits (129), Expect = 4e-09
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 1179 MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1238
+FK D + G ++ E K+ + + + I +D + +G + E
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIK-------NEQLLQLIFKSIDADGNGEIDQNE 57
Query: 1239 YMAFMIS 1245
+ F S
Sbjct: 58 FAKFYGS 64
Score = 31.8 bits (73), Expect = 0.17
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 1220 EAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAI 1264
EA+ +D N DG VS +E AF+ + +++ + ++ F +I
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFV--SKKRAIKNEQLLQLIFKSI 45
Score = 31.0 bits (71), Expect = 0.24
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRAL 1203
+ ++FK D D +G+++Q EF ++
Sbjct: 36 QLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding protein;
NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 53.4 bits (129), Expect = 4e-09
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+ E FK D + G + E ++ + L + + + ++ + D
Sbjct: 2 ACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKAL-SKDKVKEASAKLIKMADK 60
Query: 1229 NRDGHVSLQEYMAFM 1243
N DG +S +E++
Sbjct: 61 NSDGKISKEEFLNAN 75
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 54.9 bits (133), Expect = 7e-09
Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 21/155 (13%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
E+ + E + +K GK++ R LG +
Sbjct: 10 LEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPS-----------SIDEKKIKE 58
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK---EM 1285
+++ ++Y+ ++ + + EE+ F + Y+TK ++ LT +
Sbjct: 59 LYGDNLTYEQYLEYLSIC-VHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDAL 117
Query: 1286 ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 1320
D + +DY F + Q
Sbjct: 118 TDQEAIDALNAFSSE------DNIDYKLFCEDILQ 146
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 56.0 bits (135), Expect = 1e-08
Identities = 28/172 (16%), Positives = 54/172 (31%), Gaps = 18/172 (10%)
Query: 1150 MRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHF-DKDKSGKLNQTEFKSCLRALGYDLP 1208
M Q + E+ + L+E +K F ++ SG L EFK +
Sbjct: 1 MGQQFSWEEAEENGAVGAADAAQLQE---WYKKFLEECPSGTLFMHEFKRFFKVPDN--- 54
Query: 1209 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASD 1268
+ EA+ D N D + EY+A + ++ +++ F
Sbjct: 55 ----EEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLE--HKLKWTFKIYDKDR 108
Query: 1269 RPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 1320
+ ++EL ++ + + K L E +F
Sbjct: 109 NGCIDRQEL-----LDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFL 155
Score = 44.0 bits (104), Expect = 9e-05
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMV----------EEGQPD 1216
G E LK FK +DKD++G +++ E + ++ + P+
Sbjct: 91 GTLEHKLKW---TFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPE 147
Query: 1217 PEFEAILDLVDPNRDGHVSLQEYMAFM 1243
+ I LVD N DG +SL E++
Sbjct: 148 EVVDRIFLLVDENGDGQLSLNEFVEGA 174
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 54.9 bits (133), Expect = 1e-08
Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 18/151 (11%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
E +++F F D++ G +++ + + A+G EE LD +
Sbjct: 20 DETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEE----------LDAMIK 69
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK---EM 1285
G ++ ++ K + I AF + + + K L LT
Sbjct: 70 EASGPINFTVFLTMFGEKLKGA-DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRF 128
Query: 1286 ADYCVERMKPYVDPKTERGIPGALDYIEFTR 1316
++ M P G +DY
Sbjct: 129 TPEEIKNMWAAFPPDVA----GNVDYKNICY 155
Score = 50.7 bits (122), Expect = 3e-07
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 7/80 (8%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
D FK D D G + ++ + L G E + + P+
Sbjct: 91 ADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGG-------GRFTPEEIKNMWAAFPPD 143
Query: 1230 RDGHVSLQEYMAFMISKETE 1249
G+V + + E
Sbjct: 144 VAGNVDYKNICYVITHGEDA 163
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 53.1 bits (128), Expect = 1e-08
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
L+ F + FD + +G ++ K L LG + E + ++ V
Sbjct: 27 LPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLG-------VPKTHLELKKLIGEVSS 79
Query: 1229 NRDGHVSLQEYMAFMISK 1246
S +++ M+ K
Sbjct: 80 GSGETFSYPDFLRMMLGK 97
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP:
a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 53.1 bits (128), Expect = 1e-08
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 1160 IQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEF 1219
Q S +S +K+ +F+ D D+SG L+ E K L+ D + E
Sbjct: 30 FQTSGLSKMSASQVKD---IFRFIDNDQSGYLDGDELKYFLQKFQSDA----RELTESET 82
Query: 1220 EAILDLVDPNRDGHVSLQEYMAFMIS 1245
++++D D + DG + E+ + S
Sbjct: 83 KSLMDAADNDGDGKIGADEFQEMVHS 108
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 54.2 bits (131), Expect = 1e-08
Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 24/155 (15%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
D +K FK D D SG L+ EF S L L +P + ++D+ D +
Sbjct: 2 ADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQ----------QNPLVQRVIDIFDTD 50
Query: 1230 RDGHVSLQEYMAFMISKETENVQSSEEIENAFHA--------IAASDRPYVTKEELYANL 1281
+G V +E++ + + +++ AF I+ + V K + NL
Sbjct: 51 GNGEVDFKEFIEGVSQFSVKG-DKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNL 109
Query: 1282 TKEMADYCVERMKPYVDPKTERGIPGALDYIEFTR 1316
V++ D + G + + EF
Sbjct: 110 KDTQLQQIVDKTIINADKDGD----GRISFEEFCA 140
Score = 45.7 bits (109), Expect = 1e-05
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL--- 1225
E L+ F+ +D DK G ++ E L+ MV D + + I+D
Sbjct: 73 KEQKLRF---AFRIYDMDKDGYISNGELFQVLKM------MVGNNLKDTQLQQIVDKTII 123
Query: 1226 -VDPNRDGHVSLQEYMAFM 1243
D + DG +S +E+ A +
Sbjct: 124 NADKDGDGRISFEEFCAVV 142
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 55.2 bits (133), Expect = 2e-08
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1226
G + L+ FK +D D +G +++ E + ++A+ E + + D +
Sbjct: 84 GKVDQKLR---WYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKI 140
Query: 1227 DPNRDGHVSLQEYMAFMISKET--ENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
D N DG +SL+E+M + E + + S ++ + I + EE
Sbjct: 141 DINGDGELSLEEFMEGVQKDEVLLDILTRSLDLTHIVKLIQNDGKNPHAPEEA 193
Score = 53.2 bits (128), Expect = 6e-08
Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 10/120 (8%)
Query: 1159 QIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE 1218
+ ++ +S ++ F + SG+L EFK +
Sbjct: 2 NMDSKAVEELSATECHQWYKKFM--TECPSGQLTLYEFKQFFGLKNLS------PSANKY 53
Query: 1219 FEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELY 1278
E + + D N+DG++ EY+A + V +++ F + + EL
Sbjct: 54 VEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVD--QKLRWYFKLYDVDGNGCIDRGELL 111
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 51.9 bits (125), Expect = 2e-08
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
D+ +E F+ DKD +G ++ E + + LG E D E + ++ D +
Sbjct: 25 TDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLG-------EKLTDEEVDEMIREADID 77
Query: 1230 RDGHVSLQEYMAFMISK 1246
DG V+ +E++ M +K
Sbjct: 78 GDGQVNYEEFVQMMTAK 94
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 53.4 bits (128), Expect = 2e-08
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
L+ F + + FD + +G ++ K L LG + E + ++ V
Sbjct: 43 LPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLG-------VPKTHLELKRLIREVSS 95
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIE 1258
+ S +++ M+ K + ++ E
Sbjct: 96 GSEETFSYSDFLRMMLGKRSAILRMILMYE 125
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 53.3 bits (128), Expect = 3e-08
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+ L F + FD + G+++ K + LG + E + ++ V
Sbjct: 45 LPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVP-------KTHLEMKKMISEVTG 97
Query: 1229 NRDGHVSLQEYMAFMISKETE 1249
+S ++++ M+ K +
Sbjct: 98 GVSDTISYRDFVNMMLGKRSA 118
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 53.4 bits (129), Expect = 3e-08
Identities = 16/88 (18%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 1159 QIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE 1218
++ + ++ ++F F+ FDK+ +GK++ + + L LG E D E
Sbjct: 68 EVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLG-------EKLTDAE 120
Query: 1219 FEAILDLVDPNRDGHVSLQEYMAFMISK 1246
+ +L V+ + +G + ++++ ++ +
Sbjct: 121 VDELLKGVEVDSNGEIDYKKFIEDVLRQ 148
Score = 51.1 bits (123), Expect = 1e-07
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL-VDPNRD 1231
+ +F FDK G + + LRA+GY+ + + I++
Sbjct: 3 TRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNP-------TNQLVQDIINADSSLRDA 55
Query: 1232 GHVSLQEYMAFMISK----ETENVQSSEEIENAF 1261
++L + + + +E+ AF
Sbjct: 56 SSLTLDQITGLIEVNEKELDATTKAKTEDFVKAF 89
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand;
1.75A {Physarum polycephalum}
Length = 145
Score = 52.9 bits (128), Expect = 3e-08
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 1171 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNR 1230
+ + F+ FDKD GK++ E S LR+LG + + E I ++
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNP-------TNAELNTIKGQLNAKE 54
Query: 1231 DGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
L + + S+E+ +AF
Sbjct: 55 ---FDLATFKTVYRKPIKTPTEQSKEMLDAF 82
Score = 50.2 bits (121), Expect = 3e-07
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
+ KE F+ DK+ +G + + E + L LG + E E ++ V +
Sbjct: 72 TEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLG-------DALTSSEVEELMKEVSVS 124
Query: 1230 RDGHVSLQEYMAFMISK 1246
DG ++ + ++ +++
Sbjct: 125 GDGAINYESFVDMLVTG 141
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 53.6 bits (129), Expect = 4e-08
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 1161 QARNQSGVSEDALKEFSM-MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEF 1219
+ ++ ++ ++ F+ D ++ +++ E+ LG D
Sbjct: 80 KEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLD---------KTMA 130
Query: 1220 EAILDLVDPNRDGHVSLQEYMAFM 1243
A D +D N DG +SL+E++
Sbjct: 131 PASFDAIDTNNDGLLSLEEFVIAG 154
Score = 50.1 bits (120), Expect = 6e-07
Identities = 14/117 (11%), Positives = 38/117 (32%), Gaps = 9/117 (7%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL--- 1225
S+ +++ F D DK G + + +F+S + M E +++ +
Sbjct: 1 SDLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAE-HAKVLMDSLTGVWDN 59
Query: 1226 --VDPNRDGHVSLQEYMAFMISK---ETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
+ ++ M + F A+ ++ ++++E
Sbjct: 60 FLTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEY 116
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB:
2pas_A 3pat_A
Length = 110
Score = 51.4 bits (124), Expect = 5e-08
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 1166 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1225
+S + +K+ +FK D D SG + + E K L++ D E +A L
Sbjct: 37 KAMSANDVKK---VFKAIDADASGFIEEEELKFVLKSFA----ADGRDLTDAETKAFLKA 89
Query: 1226 VDPNRDGHVSLQEYMAFM 1243
D + DG + + E+ +
Sbjct: 90 ADKDGDGKIGIDEFETLV 107
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 51.4 bits (124), Expect = 5e-08
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
++ +KE F+ DKD+SG + + E K L+ D E +A+L D
Sbjct: 39 TDAQVKEV---FEILDKDQSGFIEEEELKGVLKGFS----AHGRDLNDTETKALLAAGDS 91
Query: 1229 NRDGHVSLQEYMAFM 1243
+ DG + E+ +
Sbjct: 92 DHDGKIGADEFAKMV 106
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C*
1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C
3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z
2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 52.5 bits (127), Expect = 6e-08
Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 10/95 (10%)
Query: 1169 SEDALKEFSMMFKHFD--KDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1226
S+D + + +F+ FD + G ++ + R LG + + + A+
Sbjct: 4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINP-------RNEDVFAVGG-T 55
Query: 1227 DPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
+ + +E++ + + AF
Sbjct: 56 HKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAF 90
Score = 49.8 bits (120), Expect = 5e-07
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
+ ++ FK FD++ G ++ E + L ALG E D + + I+ L D
Sbjct: 80 QGTFADYMEAFKTFDREGQGFISGAELRHVLTALG-------ERLSDEDVDEIIKLTDLQ 132
Query: 1230 RD--GHVSLQEYMAFMISK 1246
D G+V ++++ +++
Sbjct: 133 EDLEGNVKYEDFVKKVMAG 151
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein;
HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB:
1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Length = 109
Score = 50.8 bits (122), Expect = 8e-08
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1226
G+ + + + +F DKDKSG + + E S L+ E + ++
Sbjct: 34 GLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFS----SDARDLSAKETKTLMAAG 89
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D + DG + ++E+ +
Sbjct: 90 DKDGDGKIGVEEFSTLV 106
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 53.2 bits (128), Expect = 9e-08
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
F + +SG L E L+ LG+ + + +L + L +
Sbjct: 123 FVMNARARSGTLEPHEILPALQQLGFYI--------NQRTSLLLHRLFARGMAFCDLNCW 174
Query: 1240 MAFMI 1244
+A
Sbjct: 175 IAICA 179
Score = 52.1 bits (125), Expect = 3e-07
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 1149 GMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLP 1208
+M ++ + + D F D+D+SG L E G L
Sbjct: 26 IYQMPPSVRNTWWFPLLNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRL- 84
Query: 1209 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 1247
++ + D + +GH+S E+MA E
Sbjct: 85 ------SPQTALRMMRIFDTDFNGHISFYEFMAMYKFME 117
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V,
chicken, molecular motor, ATPase, ELC, IQ motif, muscle
protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP:
a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B*
1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 51.8 bits (125), Expect = 1e-07
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV-- 1226
++D L+EF F+ FD+ GK+ ++ +RALG + + E +L
Sbjct: 5 NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNP-------TNAEVLKVLGNPKS 57
Query: 1227 DPNRDGHVSLQEYMAFMISKETENVQSS-EEIENAFHAIAASDRPYVTKEELYANLTK 1283
D + V + ++ + + Q + E+ F V EL LT
Sbjct: 58 DELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTT 115
Score = 48.4 bits (116), Expect = 2e-06
Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+ +++ F+ FDK+ +GK+ E + L LG + + E E +L
Sbjct: 82 GQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMT-------EEEVETVLA-GHE 133
Query: 1229 NRDGHVSLQEYMAFMIS 1245
+ +G ++ + ++ ++S
Sbjct: 134 DSNGCINYEAFLKHILS 150
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 51.4 bits (124), Expect = 1e-07
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
S+ A +F F FD+ K+ ++ RALG + + E IL
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNP-------TNAEINKILGNPSK 55
Query: 1229 NR--DGHVSLQEYMAFMISKETENVQSS-EEIENAF 1261
++ +E++ + + Q + E+
Sbjct: 56 EEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGL 91
Score = 43.7 bits (104), Expect = 5e-05
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
+ ++F + FDK+ +G + E + L LG E + E E ++ + +
Sbjct: 81 QGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLG-------EKMTEEEVEELMKGQE-D 132
Query: 1230 RDGHVSLQEYMAFMIS 1245
+G ++ + ++ ++S
Sbjct: 133 SNGCINYEAFVKHIMS 148
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN
membrane targeting, EF-hand, cell projection, cilium;
2.00A {Trypanosoma cruzi}
Length = 219
Score = 52.6 bits (126), Expect = 2e-07
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 5/112 (4%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQP---DPEFEAILDL 1225
+ +A + +FK FDK+++GKL E S + + ++
Sbjct: 43 TAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLG 102
Query: 1226 VDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
G E++ F + + E+ F I AS V +EE
Sbjct: 103 SKLENKGSEDFVEFLEFRL--MLCYIYDFFELTVMFDEIDASGNMLVDEEEF 152
Score = 51.4 bits (123), Expect = 4e-07
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
L MF D + +++ EFK + L G + A+ +D
Sbjct: 128 DFFELTV---MFDEIDASGNMLVDEEEFKRAVPKLE------AWGAKVEDPAALFKELDK 178
Query: 1229 NRDGHVSLQEYMAFMISK 1246
N G V+ E+ A+ +
Sbjct: 179 NGTGSVTFDEFAAWASAV 196
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 51.0 bits (123), Expect = 2e-07
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 12/88 (13%)
Query: 1175 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
+ F FD+ +G++ +T LRA G + A + ++ V
Sbjct: 6 PYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPT-----------LAEITEIESTLPAEV 54
Query: 1235 SLQEYMAFMISKETENVQSS-EEIENAF 1261
+++++ + ++ EE F
Sbjct: 55 DMEQFLQVLNRPNGFDMPGDPEEFVKGF 82
Score = 46.0 bits (110), Expect = 9e-06
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
+EF F+ FDKD +G + E + L +LG E + E + +L V
Sbjct: 72 PGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLG-------EKLSNEEMDELLKGVPVK 124
Query: 1230 RDGHVSLQEYMAFMIS 1245
DG V+ +++ +++
Sbjct: 125 -DGMVNYHDFVQMILA 139
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 50.0 bits (120), Expect = 2e-07
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 1166 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1225
SG+S+ + + +F+ D D+SG + + E K L+ E + L
Sbjct: 33 SGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFE----SGARVLTASETKTFLAA 88
Query: 1226 VDPNRDGHVSLQEYMAFMIS 1245
D + DG + +E+ + S
Sbjct: 89 ADHDGDGKIGAEEFQEMVQS 108
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 51.0 bits (123), Expect = 2e-07
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+ ++EF F D+++ G +++ + L ++G + + L+ +
Sbjct: 2 DQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPT-----------DEYLEGMMS 50
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
G ++ ++ K + I NAF
Sbjct: 51 EAPGPINFTMFLTMFGEKLNGT-DPEDVIRNAF 82
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 52.1 bits (125), Expect = 2e-07
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 1149 GMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLP 1208
G + E + ARN+ + + F FDKD SG + E+K+ + G
Sbjct: 91 GWKQLATSELKKWARNEPTLIREWGDAV---FDIFDKDGSGTITLDEWKAYGKISG---- 143
Query: 1209 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETE 1249
+ EA D + G + + E +
Sbjct: 144 ---ISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYT 181
Score = 48.6 bits (116), Expect = 2e-06
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 7/97 (7%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKS-----CLRALGYDLPMVEEGQPDPEFEAIL 1223
+ +K MF D + +GK+ E S L + EA
Sbjct: 15 NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKR--HQVCVEAFF 72
Query: 1224 DLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENA 1260
++ +++ T ++ E
Sbjct: 73 RGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPT 109
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 49.5 bits (119), Expect = 2e-07
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
S D +K+ F D+DKSG + + E K L+ D E +A L D
Sbjct: 39 SLDDVKK---AFYVIDQDKSGFIEEDELKLFLQNFS----PSARALTDAETKAFLADGDK 91
Query: 1229 NRDGHVSLQEYMAFMIS 1245
+ DG + + E+ A + +
Sbjct: 92 DGDGMIGVDEFAAMIKA 108
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 49.6 bits (119), Expect = 2e-07
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 1160 IQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEF 1219
S + D +K+ F D+DKSG + + E + L+ E
Sbjct: 31 FSTVGLSSKTPDQIKKV---FGILDQDKSGFIEEEELQLFLKNFS----SSARVLTSAET 83
Query: 1220 EAILDLVDPNRDGHVSLQEYMAFM 1243
+A L D + DG + ++E+ + +
Sbjct: 84 KAFLAAGDTDGDGKIGVEEFQSLV 107
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase activator;
3.00A {Homo sapiens}
Length = 211
Score = 52.1 bits (125), Expect = 2e-07
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
Query: 1157 EQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPD 1216
+ A +Q V + F + SG EFK+ L G + +
Sbjct: 5 NGKSIAGDQKAVPTQETHVWYRTFM--MEYPSGLQTLHEFKTLLGLQG------LNQKAN 56
Query: 1217 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEE 1276
+ + + D N+DG V E++A + E ++ ++++ F A + K E
Sbjct: 57 KHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKME--QKLKWYFKLYDADGNGSIDKNE 114
Query: 1277 L 1277
L
Sbjct: 115 L 115
Score = 51.3 bits (123), Expect = 3e-07
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1226
E LK FK +D D +G +++ E A+ L + P+ + +
Sbjct: 89 EKMEQKLKW---YFKLYDADGNGSIDKNELLDMFMAV-QALNGQQTLSPEEFINLVFHKI 144
Query: 1227 DPNRDGHVSLQEYMAFMISKET--ENVQSSEEIENAFHAIAASDRP 1270
D N DG ++L+E++ M + E V S + N I +P
Sbjct: 145 DINNDGELTLEEFINGMAKDQDLLEIVYKSFDFSNVLRVICNGKQP 190
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein
protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A*
1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B
1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 51.3 bits (123), Expect = 2e-07
Identities = 12/76 (15%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
+K++ ++K FD D+SG + +E A G+ L + +++ + G
Sbjct: 76 IKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHL--------NEHLYSMIIRRYSDEGG 127
Query: 1233 HVSLQEYMAFMISKET 1248
++ +++ ++ +
Sbjct: 128 NMDFDNFISCLVRLDA 143
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 48.9 bits (117), Expect = 3e-07
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
VS ++ +F DKD G ++ E + G P I L D
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGL---------PSTLLAHIWSLCD 54
Query: 1228 PNRDGHVSLQEYMAFM 1243
G +S ++
Sbjct: 55 TKDCGKLSKDQFALAF 70
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Length = 109
Score = 48.8 bits (117), Expect = 4e-07
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
S D +K+ F D+DKSG + + E K L+ D E +A L D
Sbjct: 40 SADDIKK---AFFVIDQDKSGFIEEDELKLFLQVFS----AGARALTDAETKAFLKAGDS 92
Query: 1229 NRDGHVSLQEYMAFM 1243
+ DG + + E+ A +
Sbjct: 93 DGDGAIGVDEWAALV 107
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 51.0 bits (122), Expect = 4e-07
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 1164 NQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAIL 1223
+ E K + MF D +++ E+ + + G + +A
Sbjct: 99 KGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIP---------KSDCDAAF 149
Query: 1224 DLVDPNRDGHVSLQEYMAFM 1243
D + V+ + +
Sbjct: 150 DTLSDGGKTMVTREIFARLW 169
Score = 48.7 bits (116), Expect = 2e-06
Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 16/131 (12%)
Query: 1168 VSEDALKEFSMMFK-HFDKDKSGKLNQTEFKSCLRALGYDLPMVEEG--------QPDPE 1218
+S+ + +F +D + G + +F+ ++ + +G
Sbjct: 6 LSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLI 65
Query: 1219 FEAILDLVDPNRDGHVSLQEYMAFM--ISKETENVQSSEE-----IENAFHAIAASDRPY 1271
++ + D N D V+ +E++ K E +S E + F S
Sbjct: 66 WDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNI 125
Query: 1272 VTKEELYANLT 1282
+ K E
Sbjct: 126 IDKHEYSTVYM 136
Score = 45.6 bits (108), Expect = 2e-05
Identities = 18/149 (12%), Positives = 48/149 (32%), Gaps = 10/149 (6%)
Query: 1142 WDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLR 1201
WD + ++ + + + + + K+ D+++ ++ + E+
Sbjct: 32 WDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEWLKMWA 91
Query: 1202 ALGYDLPMVEEGQP--DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIEN 1259
+ E + D+ D + D + EY +S + +
Sbjct: 92 ECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGI----PKSDCDA 147
Query: 1260 AFHAIAASDRPYVTKEELYANLTKEMADY 1288
AF ++ + VT+E + +Y
Sbjct: 148 AFDTLSDGGKTMVTREI----FARLWTEY 172
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 50.9 bits (122), Expect = 5e-07
Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 38/186 (20%)
Query: 1156 LEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQP 1215
+ R ++G S+ +L F+ D++K G L++ + + + AL
Sbjct: 11 IPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQ-IGALAV---------- 59
Query: 1216 DPEFEAILDLVDPNRDGHVSLQEYMAFM---------------ISKETENVQSSEEIENA 1260
+P + I++ P+ V ++ + K ++ A
Sbjct: 60 NPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYA 119
Query: 1261 FHAIAASDRPYVTKEELY--------ANLTKEMADYCVERMKPYVDPKTERGIPGALDYI 1312
F +++ E+ +T+E + +R D + GA+ ++
Sbjct: 120 FQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGD----GAVSFV 175
Query: 1313 EFTRTL 1318
EFT++L
Sbjct: 176 EFTKSL 181
Score = 44.0 bits (104), Expect = 1e-04
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 1150 MRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPM 1209
R + + + Q + + F+ +D D+ GK+++ E LR +
Sbjct: 90 FRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGV--Q 147
Query: 1210 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETEN 1250
V E Q + + + D + DG VS E+ + + E
Sbjct: 148 VTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKMDVEQ 188
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 48.6 bits (116), Expect = 5e-07
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
V + + ++ +F DK SG L + ++ L P + +I +L D
Sbjct: 8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSL---------PQAQLASIWNLSD 58
Query: 1228 PNRDGHVSLQEYMAFM 1243
++DG ++ +E++ M
Sbjct: 59 IDQDGKLTAEEFILAM 74
Score = 29.0 bits (65), Expect = 3.7
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 1165 QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCL----RAL-GYDLPMV 1210
QS + + L ++ D D+ GKL EF + A+ G LP V
Sbjct: 42 QSSLPQAQLAS---IWNLSDIDQDGKLTAEEFILAMHLIDVAMSGQPLPPV 89
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 50.9 bits (122), Expect = 6e-07
Identities = 27/184 (14%), Positives = 64/184 (34%), Gaps = 37/184 (20%)
Query: 1157 EQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPD 1216
E+ + + ++G S + F DK ++G L++ +F+ + E +
Sbjct: 12 EELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQR-----------IPELAIN 60
Query: 1217 PEFEAILDLVDPNRDGHVSLQEYMAFM--------------ISKETENVQSSEEIENAFH 1262
P + I++ + V+ + +M + ++ S ++ AF
Sbjct: 61 PLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFR 120
Query: 1263 AIAASDRPYVTKEELY--------ANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEF 1314
++++EL N++ E +R D + A+ + EF
Sbjct: 121 LYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGD----SAISFTEF 176
Query: 1315 TRTL 1318
+ L
Sbjct: 177 VKVL 180
Score = 29.0 bits (65), Expect = 9.7
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 1156 LEQQIQARNQSGVSEDALKEF-SMMFKHFDKDKSGKLNQTEFKSCLR 1201
L Q ++ +S++ L + D+D ++ TEF L
Sbjct: 135 LLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLE 181
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 50.6 bits (121), Expect = 6e-07
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 1149 GMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLP 1208
G + E + A+N+ + +F DKD++G + E+K+ +A G
Sbjct: 87 GWKKLATDELEKYAKNEPTLIRIWGDA---LFDIVDKDQNGAITLDEWKAYTKAAG---- 139
Query: 1209 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1244
Q + E + D + G + + E +
Sbjct: 140 ---IIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL 172
Score = 46.0 bits (109), Expect = 2e-05
Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 7/101 (6%)
Query: 1163 RNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEF-----KSCLRALGYDLPMVEEGQPDP 1217
+ + MF D + +GK++ E + LG +
Sbjct: 5 LTSDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKR--HKD 62
Query: 1218 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIE 1258
EA Y+ T+ ++ + E
Sbjct: 63 AVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNE 103
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 48.9 bits (117), Expect = 6e-07
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
E+ + E F + + + LG EG + + ++ D +
Sbjct: 36 EEFVSELCKGFSLLADPERHLITAESLRRNSGILG------IEGMSKEDAQGMVREGDLD 89
Query: 1230 RDGHVSLQEYMAFMISKETENVQSSEE 1256
DG ++ E+ M+ E ++ +E
Sbjct: 90 GDGALNQTEFCVLMVRLSPEMMEDAET 116
Score = 39.2 bits (92), Expect = 0.001
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 1216 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKE 1275
+P +++L ++ + M K + E+ F +A +R +T E
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVE-EFVSELCKGFSLLADPERHLITAE 60
Query: 1276 ELYANLTK 1283
L N
Sbjct: 61 SLRRNSGI 68
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 50.5 bits (121), Expect = 6e-07
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
L + F FD D+SG ++ E + L +G+ L +I +G
Sbjct: 102 LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRL-------SPQAVNSIAKRYS--TNG 152
Query: 1233 HVSLQEYMAFMISKET 1248
++ +Y+A +
Sbjct: 153 KITFDDYIACCVKLRA 168
Score = 37.8 bits (88), Expect = 0.010
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 1175 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
F + G+++ E + CL G + ++ ++D + G +
Sbjct: 34 PLYGYFA-AVAGQDGQIDADELQRCLTQSGIAGG--YKPFNLETCRLMVSMLDRDMSGTM 90
Query: 1235 SLQEYMAFMISKE 1247
E+
Sbjct: 91 GFNEFKELWAVLN 103
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 50.3 bits (120), Expect = 7e-07
Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 10/89 (11%)
Query: 1156 LEQQIQARNQSGVSEDALKEF-SMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQ 1214
E+ I + +FK D G ++ EF++ +
Sbjct: 86 WEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQ-------- 137
Query: 1215 PDPEFEAILDLVDPNRDGHVSLQEYMAFM 1243
+ A+ +++ L Y
Sbjct: 138 -CADVPAVYNVITDGGKVTFDLNRYKELY 165
Score = 48.4 bits (115), Expect = 3e-06
Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 1167 GVSEDALKEFSMMFKHF-DKDKSGKLNQTEFKSCLRALGY------DLPMVEEGQ--PDP 1217
G+++ ++ F F D + G + +F+ + + Q +
Sbjct: 1 GLNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLED 60
Query: 1218 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSE-------EIENAFHAIAASDRP 1270
E+ + D N+D VS +EY+A ++ I F + S
Sbjct: 61 EWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDG 120
Query: 1271 YVTKEELYANLTK 1283
V EE
Sbjct: 121 IVDLEEFQNYCKN 133
Score = 44.9 bits (106), Expect = 4e-05
Identities = 13/137 (9%), Positives = 42/137 (30%), Gaps = 6/137 (4%)
Query: 1142 WDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLR 1201
+ + + R + + + + + E+ + D +K ++ E+ +
Sbjct: 28 DNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAMWE 87
Query: 1202 ALGYDLPMVEEGQP--DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIEN 1259
V + + +D + DG V L+E+ + + + ++
Sbjct: 88 KTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQL----QCADVPA 143
Query: 1260 AFHAIAASDRPYVTKEE 1276
++ I +
Sbjct: 144 VYNVITDGGKVTFDLNR 160
Score = 30.3 bits (68), Expect = 2.9
Identities = 1/35 (2%), Positives = 7/35 (20%), Gaps = 3/35 (8%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLR 1201
+ + ++ + +K
Sbjct: 135 QLQCADVPA---VYNVITDGGKVTFDLNRYKELYY 166
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 49.4 bits (119), Expect = 7e-07
Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 20/161 (12%)
Query: 1161 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1220
+A + +S+ ++E F D+D+ G + + K +LG PD E
Sbjct: 3 EAPRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP-------PDDELN 55
Query: 1221 AILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYAN 1280
A+L G ++ ++ K + + + NAF + ++ ++ L
Sbjct: 56 AMLKEC----PGQLNFTAFLTLFGEKVSGT-DPEDALRNAFSMFDEDGQGFIPEDYLKDL 110
Query: 1281 LTK---EMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 1318
L + ++ + K +Y +
Sbjct: 111 LENMGDNFSKEEIKNVWKDAPLKN-----KQFNYNKMVDIK 146
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB:
1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 49.3 bits (118), Expect = 9e-07
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
L + F D+D SG + E + + +GY L I+ ++G
Sbjct: 69 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRL-------SPQTLTTIVKRYS--KNG 119
Query: 1233 HVSLQEYMAFMISKET 1248
+ +Y+A +
Sbjct: 120 RIFFDDYVACCVKLRA 135
Score = 38.9 bits (91), Expect = 0.003
Identities = 12/107 (11%), Positives = 32/107 (29%), Gaps = 12/107 (11%)
Query: 1179 MFKHFDK--DKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSL 1236
++ +F + G+++ E + CL G + ++ ++D + G +
Sbjct: 2 VYTYFSAVAGQDGEVDAEELQRCLTQSGINGT--YSPFSLETCRIMIAMLDRDHTGKMGF 59
Query: 1237 QEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 1283
+ + + F + V EL +
Sbjct: 60 NAFKELWAAL--------NAWKENFMTVDQDGSGTVEHHELRQAIGL 98
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS
signal transduction, endocytosis/exocytosis complex; NMR
{Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 47.0 bits (112), Expect = 1e-06
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++++ + + FK D +G + + K P E I +L D
Sbjct: 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK---------LPILELSHIWELSD 53
Query: 1228 PNRDGHVSLQEYMAFM 1243
++DG ++L E+ A
Sbjct: 54 FDKDGALTLDEFCAAF 69
Score = 28.1 bits (63), Expect = 5.7
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 1165 QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCL----RAL-GYDLPMV 1210
+S + L +++ D DK G L EF + GYDLP
Sbjct: 37 KSKLPILELSH---IWELSDFDKDGALTLDEFCAAFHLVVARKNGYDLPEK 84
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B*
1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B
3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y
2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 48.3 bits (116), Expect = 2e-06
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 20/151 (13%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
+ ++E F D D+ G +++ + K+ LG E + ++
Sbjct: 13 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKE----------LTAMLK- 61
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK---EM 1285
G ++ +++ K + S E I NAF + + E + L
Sbjct: 62 EAPGPLNFTMFLSIFSDKLSGT-DSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNF 120
Query: 1286 ADYCVERMKPYVDPKTERGIPGALDYIEFTR 1316
+ + G DY++FT
Sbjct: 121 NKDEMRMTFKEAPVEG-----GKFDYVKFTA 146
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1
EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 46.7 bits (111), Expect = 3e-06
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++E+ + + F+ D S ++ + K+ + PE I +L D
Sbjct: 16 ITEEQREYYVNQFRSLQPDPSSFISGSVAKN---------FFTKSKLSIPELSYIWELSD 66
Query: 1228 PNRDGHVSLQEYMAFM 1243
+ DG ++L E+ A
Sbjct: 67 ADCDGALTLPEFCAAF 82
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 48.5 bits (116), Expect = 3e-06
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 1169 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1228
++ ++EF F+ D+DK G +++ + ++ +LG E LD +
Sbjct: 52 TQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCT-----------EQELDSMVA 100
Query: 1229 NRDGHVSLQEYMAFMISKETENVQSSEEIENAF 1261
G ++ ++ + + I NAF
Sbjct: 101 EAPGPINFTMFLTIFGDRIAGT-DEEDVIVNAF 132
Score = 43.8 bits (104), Expect = 9e-05
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
D F FD + GK + K L G E E + L +
Sbjct: 122 TDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWG-------EKFSQDEVDQALSEAPID 173
Query: 1230 RDGHVSLQEYMAFMISKETE 1249
+G + ++++ + E
Sbjct: 174 GNGLIDIKKFAQILTKGAKE 193
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 48.6 bits (116), Expect = 3e-06
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRAL-GYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1238
FK +D ++G + + E K + AL ++ E + + D DG + + E
Sbjct: 117 FKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDE 176
Query: 1239 YMAFMISKETENVQSSEEIENAFH 1262
+ F+ + +
Sbjct: 177 WKDFV--------SLNPSLIKNMT 192
Score = 47.1 bits (112), Expect = 9e-06
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 26/173 (15%)
Query: 1155 NLEQQIQARNQSGVSEDALKEFSMMFKHFDKD--KSGKLNQTEFKSCLRALGYDLPMVEE 1212
E + + + + ++ +FK G +++ EF+ L
Sbjct: 18 GYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRN--------R 69
Query: 1213 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYV 1272
+ + + I D+ D R+G + E++ + + E+++ AF ++
Sbjct: 70 NRRNLFADRIFDVFDVKRNGVIEFGEFVR-SLGVFHPSAPVHEKVKFAFKLYDLRQTGFI 128
Query: 1273 TKEELY-----------ANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEF 1314
+EEL L+++M + V++ D K + G +D E+
Sbjct: 129 EREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKND----GKIDIDEW 177
Score = 29.4 bits (66), Expect = 5.6
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 1158 QQIQARNQSGVSEDALKEF-SMMFKHFDKDKSGKLNQTEFKSCLR 1201
+ ++ +SED ++ F D+ GK++ E+K +
Sbjct: 138 VALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVS 182
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 47.6 bits (114), Expect = 3e-06
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD-- 1227
A EF FK FD++ G ++ E ++ L+ LG E + + I D
Sbjct: 81 GTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLG-------ERITEDQCNDIFTFCDIR 133
Query: 1228 PNRDGHVSLQEYMAFMISK 1246
+ DG++ ++ M +++
Sbjct: 134 EDIDGNIKYEDLMKKVMAG 152
Score = 46.0 bits (110), Expect = 1e-05
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 1169 SEDALKEFSMMFKHFD--KDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1226
++D ++E +F FD + G ++ + LR LG + + +
Sbjct: 4 TKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP-------TEAQVHQHGG-T 55
Query: 1227 DPNRDGHVSLQEYMAFM-ISKETENVQSSEEIENAF 1261
+ L+E + + +++E AF
Sbjct: 56 KKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAF 91
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 47.4 bits (113), Expect = 4e-06
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
L + F FD D+SG ++ E + L +G+ L +I G
Sbjct: 71 LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRL-------NPQTVNSIAKRYS--TSG 121
Query: 1233 HVSLQEYMAFMISKET 1248
++ +Y+A +
Sbjct: 122 KITFDDYIACCVKLRA 137
Score = 33.9 bits (78), Expect = 0.14
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 1175 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1234
F + G+++ E + CL G + ++ ++D + G +
Sbjct: 3 PLYGYFASV-AGQDGQIDADELQRCLTQSGIAGG--YKPFNLETCRLMVSMLDRDMSGTM 59
Query: 1235 SLQEYMAFM 1243
E+
Sbjct: 60 GFNEFKELW 68
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos taurus}
SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A
4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A
1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 44.1 bits (105), Expect = 8e-06
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 1169 SEDALKEFSMMFKHFDKD--KSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1226
S + +K F+ F ++++ E K ++ LG L + +++ V
Sbjct: 3 SPEEIKGA---FEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMS-----TLDEMIEEV 54
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D N DG VS +E++ M
Sbjct: 55 DKNGDGEVSFEEFLVMM 71
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 44.4 bits (105), Expect = 1e-05
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE-FEAILDLVDP 1228
E A++ F F DK G L + + + + + P E Q DP + I+ +D
Sbjct: 5 EHAMETMMFTFHKFAGDK-GYLTKEDLRVLMEK---EFPGFLENQKDPLAVDKIMKDLDQ 60
Query: 1229 NRDGHVSLQEYMAFM 1243
RDG V Q + + +
Sbjct: 61 CRDGKVGFQSFFSLI 75
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 48.7 bits (116), Expect = 2e-05
Identities = 59/356 (16%), Positives = 129/356 (36%), Gaps = 31/356 (8%)
Query: 54 AALKIQTQLQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNN 113
LK+ Q +++ K LQ+ + E+++ H + E K+ +QEK +A
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 114 DLGKDLRSVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINE 173
+ V+ +K E LE L + +I + +E + +L + Q+++ +
Sbjct: 908 YAEAEEMRVRLAAKKQE-LEEILHEMEARIEEEEERSQQLQ-------AEKKKMQQQMLD 959
Query: 174 EWTQLTAKANTRKEKLLDSYDLQRFLSDYRDLMSWINSMMGLVSSDELANDVTGAEALLE 233
QL + R++ L+ + D + + D+ + L E
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL--------IMEDQNNKLTKERKLLEE 1011
Query: 234 RHQEHRTEIDARTGTFQAFDLFGQQLLQSGHYASVEIQDKLGNLAEAREDLEKAWIARRM 293
R + T + + + E++ +L ++R++LEK +
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESM----ISELEVRLKKEEKSRQELEK----IKR 1063
Query: 294 QLDQCLELQLFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEE 353
+L+ E + + + ++ + ++ K + ++A + + ED N +
Sbjct: 1064 KLEG--ESSDLHEQIAELQAQIAELK-----AQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 354 KIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQ 409
KI L++ L + KQ D L+ E L + T Q+
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172
Score = 42.5 bits (100), Expect = 0.001
Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 18/244 (7%)
Query: 918 RWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNSWFENAEEDLTDPVRCNS- 976
R Q+L + +Q++L ++EQ + E + + + + E+D+ N+
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 977 -IEEIRALREAHAQFQASLSSAQADFEAL----AALDQQIKSFNVGPNPYTWFTMEA--- 1028
+E + L E + +L+ + + L + I V E
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 1029 ---LEDTWRNLQKIIKERDIELA----KEATRQDENDALRKEFAKHANAFHQWLTETRTS 1081
LE +L + I E ++A + A +++E A + + +
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNN-ALKKIRE 1120
Query: 1082 MMEGTGSLEQQLEAIKRKAAEVRSRRSDLK-KIEDLGAILEEHLILDNRYTEHSTVGLAQ 1140
+ L++ LE+ K + ++ DL ++E L LE+ L E
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180
Query: 1141 QWDQ 1144
D+
Sbjct: 1181 DDDK 1184
Score = 29.4 bits (66), Expect = 9.5
Identities = 41/254 (16%), Positives = 94/254 (37%), Gaps = 17/254 (6%)
Query: 499 QKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVE 558
Q+ E LK E + + E E +E+ L K Q +E
Sbjct: 873 QQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM------RVRLAAKKQELE 926
Query: 559 ADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEAN 618
+ + RI++ ++ L + + + + + E + L + +
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986
Query: 619 TLHQFFRDIADE-ESWIKEKKLLVGS-DDYGRDLTG----VQNLKKKHKRLEAELASHQP 672
+ + D+ KE+KLL D +L +NL K + E+ ++ +
Sbjct: 987 KMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046
Query: 673 AIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLT-YQHFLA 731
++ +++ ++L + ++E L++ +EL+ A +L + Q LA
Sbjct: 1047 RLKKEEKSRQELEKIKR----KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
Query: 732 KVEEEEAWISEKQQ 745
++E+E + + +
Sbjct: 1103 RLEDETSQKNNALK 1116
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific
guanylate cyclase activator; 2.40A {Bos taurus} SCOP:
a.39.1.5
Length = 193
Score = 45.6 bits (108), Expect = 3e-05
Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 10/115 (8%)
Query: 1163 RNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAI 1222
+ +E ++E+ F SG L+ EFK G E +
Sbjct: 17 LESTDFTEHEIQEWYKGFL--RDCPSGHLSMEEFKKIYGNFF------PYGDASKFAEHV 68
Query: 1223 LDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 1277
D N DG + +E++ + ++ ++++ AF Y++K E+
Sbjct: 69 FRTFDANGDGTIDFREFIIALSVTSRGKLE--QKLKWAFSMYDLDGNGYISKAEM 121
Score = 42.9 bits (101), Expect = 2e-04
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALG-----YDLPMVEEGQPDPEFEA 1221
G E LK F +D D +G +++ E ++A+ +E P+ E
Sbjct: 95 GKLEQKLK---WAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEK 151
Query: 1222 ILDLVDPNRDGHVSLQEYMAFM 1243
I +D NRDG +SL+E++
Sbjct: 152 IFRQMDTNRDGKLSLEEFIRGA 173
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 44.8 bits (106), Expect = 6e-05
Identities = 11/75 (14%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPM-VEEGQPDPEFEAILDLVDPNRDGHVSLQE 1238
F+ +D + G + + E K + A + M +++ + + + D DG + +E
Sbjct: 128 FQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEE 187
Query: 1239 YMAFMISKETENVQS 1253
+ + ++ + +++
Sbjct: 188 WRS-LVLRHPSLLKN 201
Score = 43.7 bits (103), Expect = 2e-04
Identities = 26/177 (14%), Positives = 59/177 (33%), Gaps = 26/177 (14%)
Query: 1151 RMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKD--KSGKLNQTEFKSCLRALGYDLP 1208
+ L + S ++ +FK G +N+ EF+ L
Sbjct: 25 KQSGGLGDPELLARDTVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN---- 80
Query: 1209 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASD 1268
+ + + DL D +G + +E+ +S N ++I +F
Sbjct: 81 ----KKESLFADRVFDLFDTKHNGILGFEEFAR-ALSVFHPNAPIDDKIHFSFQLYDLKQ 135
Query: 1269 RPYVTKEELY-----------ANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEF 1314
+ ++ ++E+ NL + + +++ D K + G +D E+
Sbjct: 136 QGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHD----GKIDKEEW 188
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 44.5 bits (105), Expect = 8e-05
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEA 1221
G ++ L F +D +K G + + E ++A+ P+++E P E
Sbjct: 134 GTVQEKLN---WAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVET 190
Query: 1222 ILDLVDPNRDGHVSLQEYMAFM 1243
+D N+DG V++ E++
Sbjct: 191 FFQKMDKNKDGVVTIDEFIESC 212
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 43.7 bits (103), Expect = 1e-04
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 1178 MMFKHFDKDKSGKLNQTEFKSCLRALG-----YDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
FK +D D G + + E + A+ EE P+ + I ++D N DG
Sbjct: 103 WAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADG 162
Query: 1233 HVSLQEYMAFMISKETENVQSSEEIENAFH 1262
++LQE+ ++ I A
Sbjct: 163 KLTLQEFQEG--------SKADPSIVQALS 184
Score = 39.1 bits (91), Expect = 0.004
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 1174 KEFSMMFKHF-DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
KE +K F SG+L+ F+ + G P + ++ D N+DG
Sbjct: 25 KEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFF------PFGDPTKFATFVFNVFDENKDG 78
Query: 1233 HVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELY 1278
+ E++ + + E++ AF + Y+T+ E+
Sbjct: 79 RIEFSEFIQALSVTSRGTLD--EKLRWAFKLYDLDNDGYITRNEML 122
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 44.7 bits (105), Expect = 1e-04
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 1178 MMFKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
F +D +K G + + E + ++++ + P++ E P E +D N+DG
Sbjct: 169 WAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDG 228
Query: 1233 HVSLQEYMAFM 1243
V++ E++
Sbjct: 229 VVTIDEFLETC 239
Score = 38.1 bits (88), Expect = 0.011
Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 10/129 (7%)
Query: 1150 MRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPM 1209
++H E Q + Q+ ++ L+ FK ++ +G +++ FK
Sbjct: 70 STVRHQPEGLDQLQAQTKFTKKELQSLYRGFK--NECPTGLVDEDTFKLIYSQFF----- 122
Query: 1210 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDR 1269
+G + + D + +G + ++++ + V E+++ AF+ +
Sbjct: 123 -PQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVH--EKLKWAFNLYDINKD 179
Query: 1270 PYVTKEELY 1278
+TKEE+
Sbjct: 180 GCITKEEML 188
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 43.8 bits (103), Expect = 1e-04
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEA 1221
G + L+ F +D +K G +N+ E ++A+ Y P+++E P +
Sbjct: 121 GTVHEKLR---WTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDV 177
Query: 1222 ILDLVDPNRDGHVSLQEYMAFM 1243
+D N+DG V+L E++
Sbjct: 178 FFQKMDKNKDGIVTLDEFLESC 199
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 42.8 bits (101), Expect = 2e-04
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 1179 MFKHFDKDKSGKLNQTEFKSCLRAL--GYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSL 1236
F+ FD D G LN+ + + L + + + + IL+ D +RDG ++L
Sbjct: 103 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 162
Query: 1237 QEYMAFMISKETENVQSSEEIENAFH 1262
E+ + S + ++F
Sbjct: 163 SEFQHVI--------SRSPDFASSFK 180
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 41.1 bits (96), Expect = 2e-04
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRAL---------GYDLPMVEEGQPDPEFEAILDLVDPNR 1230
F D + G L++ E ++ D E + E ++ VD N+
Sbjct: 26 FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQ 85
Query: 1231 DGHVSLQEYMAFMISKE 1247
D V+L+E++A KE
Sbjct: 86 DRLVTLEEFLASTQRKE 102
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 40.9 bits (96), Expect = 2e-04
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE-FEAILDLV 1226
E+ L+ +F + K L++ E K L +L + D + I +
Sbjct: 8 EEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTK---ELANTIKNIKDKAVIDEIFQGL 64
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D N+D V QE+++ +
Sbjct: 65 DANQDEQVDFQEFISLV 81
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens} PDB:
1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 40.2 bits (94), Expect = 3e-04
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDP-EFEAILDLV 1226
E AL F + + KLN++E K L +LP + D F+ ++ +
Sbjct: 6 EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTR---ELPSFLGKRTDEAAFQKLMSNL 62
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D NRD V QEY F+
Sbjct: 63 DSNRDNEVDFQEYCVFL 79
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 42.1 bits (99), Expect = 3e-04
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 1167 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEA 1221
G D L F+ +D D +G ++ E + A+ +E P+
Sbjct: 95 GELNDKLI---WAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNK 151
Query: 1222 ILDLVDPNRDGHVSLQEYMAFM 1243
I +++D N+DG ++L+E+
Sbjct: 152 IFNMMDKNKDGQLTLEEFCEGS 173
Score = 40.6 bits (95), Expect = 0.001
Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 1174 KEFSMMFKHFDK-DKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
KE +K F K SG LN++EF+ + G P E + ++ D +++G
Sbjct: 25 KELQQWYKGFFKDCPSGHLNKSEFQKIYKQFF------PFGDPSAFAEYVFNVFDADKNG 78
Query: 1233 HVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELY 1278
++ +E++ + T + ++++ AF + ++ +E+
Sbjct: 79 YIDFKEFICALSV--TSRGELNDKLIWAFQLYDLDNNGLISYDEML 122
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 42.7 bits (100), Expect = 3e-04
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 1174 KEFSMMFKHF-DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
+E ++ F +G++ Q +F+S + P + + D N DG
Sbjct: 33 EELCSWYQSFLKDCPTGRITQQQFQSIYAKFF------PDTDPKAYAQHVFRSFDSNLDG 86
Query: 1233 HVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELY 1278
+ +EY+ + +++E AF ++K E+
Sbjct: 87 TLDFKEYVIALHMTTAGKTN--QKLEWAFSLYDVDGNGTISKNEVL 130
Score = 40.0 bits (93), Expect = 0.002
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 1178 MMFKHFDKDKSGKLNQTEFKSCLRALGYDLP-------MVEEGQPDPEFEAILDLVDPNR 1230
F +D D +G +++ E + A+ + +E P+ E I N
Sbjct: 111 WAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKND 170
Query: 1231 DGHVSLQEYMAFM 1243
D ++ +E++
Sbjct: 171 DDKLTEKEFIEGT 183
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 41.4 bits (97), Expect = 6e-04
Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 1174 KEFSMMFKHFDK-DKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
+E K F + SG+L + +F + G P+ + + D + +G
Sbjct: 25 REIQQWHKGFLRDCPSGQLAREDFVKIYKQFF------PFGSPEDFANHLFTVFDKDNNG 78
Query: 1233 HVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELY 1278
+ +E++ + + T E++ AF + Y+T +E+
Sbjct: 79 FIHFEEFITVLST--TSRGTLEEKLSWAFELYDLNHDGYITFDEML 122
Score = 41.0 bits (96), Expect = 0.001
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 1177 SMMFKHFDKDKSGKLNQTEFKSCLRALG-----YDLPMVEEGQPDPEFEAILDLVDPNRD 1231
S F+ +D + G + E + + ++ +E P+ + I L+D N D
Sbjct: 102 SWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNED 161
Query: 1232 GHVSLQEYMAFMISKETENVQSSEEIENAFH 1262
G+++L E+ + I A +
Sbjct: 162 GYITLDEFREGS--------KVDPSIIGALN 184
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport
protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB:
2nz0_A 2i2r_E
Length = 183
Score = 41.0 bits (96), Expect = 7e-04
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 1165 QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALG-----YDLPMVEEGQPDPEF 1219
G + L+ F +D +K G +N+ E ++A+ Y P+++E P
Sbjct: 86 LRGTVHEKLR---WTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHV 142
Query: 1220 EAILDLVDPNRDGHVSLQEYMAF 1242
+ +D N+DG V+L E++
Sbjct: 143 DVFFQKMDKNKDGIVTLDEFLES 165
Score = 39.8 bits (93), Expect = 0.002
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 1174 KEFSMMFKHF-DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
+E ++++ F ++ SG +N+ FK G + + D + G
Sbjct: 18 RELQVLYRGFKNEXPSGVVNEETFKQIYAQFF------PHGDASTYAHYLFNAFDTTQTG 71
Query: 1233 HVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELY 1278
V ++++ + E++ F+ + Y+ KEE+
Sbjct: 72 SVKFEDFVTALSI--LLRGTVHEKLRWTFNLYDINKDGYINKEEMM 115
Score = 29.0 bits (65), Expect = 6.7
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 1179 MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1238
+F FD ++G + +F + L ++ G + +L D N+DG+++ +E
Sbjct: 61 LFNAFDTTQTGSVKFEDFVTA-------LSILLRGTVHEKLRWTFNLYDINKDGYINKEE 113
Query: 1239 ------YMAFMISKETENVQSSEEIE 1258
+ M+ K T V +
Sbjct: 114 MMDIVKAIYDMMGKYTYPVLKEDTPR 139
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER,
golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 40.0 bits (93), Expect = 0.001
Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 6/129 (4%)
Query: 1121 EEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSM-M 1179
H+ + E + LD+ + Q ++ + ++ +E + +E +
Sbjct: 14 SGHIEGRHMLEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHY 73
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRAL-GYDLPMVEEGQPDPEFEAILDLV----DPNRDGHV 1234
FK D D + L+ E + + + + + E I+D V D N DG++
Sbjct: 74 FKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYI 133
Query: 1235 SLQEYMAFM 1243
E+ +
Sbjct: 134 DYAEFAKSL 142
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 39.1 bits (91), Expect = 0.001
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDP-EFEAILDLV 1226
E AL F + + KLN++E K L +LP + D F+ ++ +
Sbjct: 18 EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTR---ELPSFLGKRTDEAAFQKLMSNL 74
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D NRD V QEY F+
Sbjct: 75 DSNRDNEVDFQEYCVFL 91
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15;
EH domain, EF-hand, solution structure, S100 protein; NMR
{Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 38.6 bits (90), Expect = 0.001
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 1176 FSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVS 1235
+ ++ + +G++ + + L+ G PD I DL D + G +S
Sbjct: 13 YEKYYRQVEAGNTGRVLALDAAAFLKK---------SGLPDLILGKIWDLADTDGKGVLS 63
Query: 1236 LQEYMAFM 1243
QE+ +
Sbjct: 64 KQEFFVAL 71
Score = 29.4 bits (66), Expect = 2.2
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 1165 QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLR----AL-GYDLPMVEEGQPDP 1217
+SG+ + L + ++ D D G L++ EF LR A G ++ + P
Sbjct: 39 KSGLPDLILGK---IWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVSLSSLSLAVP 93
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein;
1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Length = 101
Score = 38.7 bits (90), Expect = 0.001
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 1170 EDALKEFSMMF-KHFDKD-KSGKLNQTEFKSCLRALGYDLPMVEEGQPDP-EFEAILDLV 1226
E A+ F ++ + KL Q E K L+ +L + ++ + ++
Sbjct: 6 EQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQK---ELATWTPTEFRECDYNKFMSVL 62
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D N+D V EY+ +
Sbjct: 63 DTNKDCEVDFVEYVRSL 79
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 38.2 bits (89), Expect = 0.001
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE-FEAILDLV 1226
E A++ +F + KL++ E K L+ +L + Q D + + I+ +
Sbjct: 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQT---ELSSFLDVQKDADAVDKIMKEL 61
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D N DG V QE++ +
Sbjct: 62 DENGDGEVDFQEFVVLV 78
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 38.7 bits (90), Expect = 0.001
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDP-EFEAILDLV 1226
E AL F + + KLN++E K L +LP + D F+ ++ +
Sbjct: 9 EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTR---ELPSWLGKRTDEAAFQKLMSNL 65
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D NRD V QEY F+
Sbjct: 66 DSNRDNEVDFQEYCVFL 82
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 40.6 bits (95), Expect = 0.002
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 1179 MFKHFDKDKSGKLNQTEFKSCLRAL--GYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSL 1236
F+ FD D G LN+ + + L + + + + IL+ D +RDG ++L
Sbjct: 134 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 193
Query: 1237 QEYMAFMISKETENVQSSEEIENAFH 1262
E+ + S + ++F
Sbjct: 194 SEFQHVI--------SRSPDFASSFK 211
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 38.3 bits (89), Expect = 0.002
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE-FEAILDLV 1226
E A+ +F + + + L + E K + +LP + D + + +L +
Sbjct: 5 ETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEK---ELPGFLQSGKDKDAVDKLLKDL 61
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D N D V E++ F+
Sbjct: 62 DANGDAQVDFSEFIVFV 78
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein
bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A
3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A
3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A*
3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 37.9 bits (88), Expect = 0.002
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE-FEAILDLV 1226
E A+ +F + + KL ++E K + +L E + E + +++ +
Sbjct: 5 EKAVVALIDVFHQYSGREGDKHKLKKSELKELINN---ELSHFLEEIKEQEVVDKVMETL 61
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D N DG QE+MAF+
Sbjct: 62 DSNGDGECDFQEFMAFV 78
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 41.4 bits (96), Expect = 0.002
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 13/106 (12%)
Query: 1179 MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1238
+ DK+K K+N E K L+ L + D I D ++ + +E
Sbjct: 16 CLRKADKNKDNKMNFKELKDFLKELNIQV-------DDGYARKIFRECDHSQTDSLEDEE 68
Query: 1239 YMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 1284
F + + EI+ AF A ++ E L L +
Sbjct: 69 IETFY-----KMLTQRAEIDRAFEEA-AGSAETLSVERLVTFLQHQ 108
Score = 31.4 bits (70), Expect = 2.3
Identities = 12/109 (11%), Positives = 33/109 (30%), Gaps = 15/109 (13%)
Query: 1174 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1233
+F+ D ++ L E ++ + L E + +
Sbjct: 47 GYARKIFRECDHSQTDSLEDEEIETFYKML----------TQRAEIDRAFEEAA-GSAET 95
Query: 1234 VSLQEYMAFMISKETENVQSSEEIENAF----HAIAASDRPYVTKEELY 1278
+S++ + F+ ++ E + + A + +TK+
Sbjct: 96 LSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTKDGFL 144
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 37.3 bits (87), Expect = 0.002
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 1170 EDALKEFSMMFKHFDKDK--SGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+ + E +F+ + + +L++ E K ++A P + +G + + +D
Sbjct: 3 QKSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAE---FPSLLKGPR--TLDDLFQELD 57
Query: 1228 PNRDGHVSLQEYMAFM 1243
N DG VS +E+ +
Sbjct: 58 KNGDGEVSFEEFQVLV 73
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin), ligand
of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB:
1nsh_A
Length = 99
Score = 37.9 bits (88), Expect = 0.002
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE-FEAILDLV 1226
E ++ +F+ + K+++TEF + +L + Q DP + ++ +
Sbjct: 9 ERCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNT---ELAAFTQNQKDPGVLDRMMKKL 65
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D + DG + QE++ +
Sbjct: 66 DLDSDGQLDFQEFLNLI 82
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 37.8 bits (88), Expect = 0.002
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 14/84 (16%)
Query: 1164 NQSG----VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEF 1219
N+ G V + ++ +F +G L+ + K ++ P
Sbjct: 1 NRWGSPWAVKPEDKAKYDAIFDSLS-PVNGFLSGDKVKPV---------LLNSKLPVDIL 50
Query: 1220 EAILDLVDPNRDGHVSLQEYMAFM 1243
+ +L D + DG + E+ M
Sbjct: 51 GRVWELSDIDHDGMLDRDEFAVAM 74
Score = 28.2 bits (63), Expect = 6.3
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 1165 QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMV 1210
S + D L +++ D D G L++ EF + + +PM
Sbjct: 42 NSKLPVDILGR---VWELSDIDHDGMLDRDEFAVAMFLVYCALEKEPVPMS 89
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand
calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 37.5 bits (87), Expect = 0.003
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 1170 EDALKEFSMMFKHF---DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE-FEAILDL 1225
E A+ F + K++++ F+ L+ +L + + + + ++
Sbjct: 7 EKAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQK---ELNHMLSDTGNRKAADKLIQN 63
Query: 1226 VDPNRDGHVSLQEYMAFM 1243
+D N DG +S EY +
Sbjct: 64 LDANHDGRISFDEYWTLI 81
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 37.5 bits (87), Expect = 0.004
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE-FEAILDLV 1226
E A+ +F ++ + KL++ E K L A +L Q DP E I++ +
Sbjct: 6 EGAMDALITVFHNYSGSEGDKYKLSKGELKELLNA---ELTDFLMSQKDPMLVEKIMNDL 62
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D N+D V E++ +
Sbjct: 63 DSNKDNEVDFNEFVVLV 79
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens} PDB:
2rgi_A 4duq_A
Length = 98
Score = 37.1 bits (86), Expect = 0.004
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE-FEAILDLV 1226
E AL F + + KL++ E K L +LP + D E + ++ +
Sbjct: 7 EQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHK---ELPSFVGEKVDEEGLKKLMGSL 63
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D N D V QEY F+
Sbjct: 64 DENSDQQVDFQEYAVFL 80
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus norvegicus}
SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 40.5 bits (94), Expect = 0.005
Identities = 11/78 (14%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 1171 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNR 1230
+ +K++ ++K F+ D+SG + E A G+ L + +++ +
Sbjct: 801 NNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHL--------NQHIYSMIIRRYSDE 852
Query: 1231 DGHVSLQEYMAFMISKET 1248
G++ +++ ++ +
Sbjct: 853 TGNMDFDNFISCLVRLDA 870
Score = 39.8 bits (92), Expect = 0.007
Identities = 12/76 (15%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1232
++ + +F+ FD DKSG ++ E + + A G+ L + ++ + +
Sbjct: 606 IRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKL--------PCQLHQVIVARFADDEL 657
Query: 1233 HVSLQEYMAFMISKET 1248
+ ++ ++ E
Sbjct: 658 IIDFDNFVRCLVRLEI 673
Score = 32.4 bits (73), Expect = 1.3
Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 13/164 (7%)
Query: 1075 LTETRTSMMEGTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHLILDNRYTEHS 1134
L ++ T ++ + + R +E ++ +L E+ L +
Sbjct: 478 LPPGEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQELDDQIQANLPDEKVLSEEEIDDNFK 537
Query: 1135 TVGLAQQWDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQT 1194
T+ D ++ +Q L + I + +L+ M D+D +GKL
Sbjct: 538 TLFSKLAGDDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLV 597
Query: 1195 EFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1238
EF + + I D ++ G +S E
Sbjct: 598 EFNILWNRIR-------------NYLTIFRKFDLDKSGSMSAYE 628
Score = 29.7 bits (66), Expect = 7.6
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 13/61 (21%)
Query: 1178 MMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1237
M D D +GKL EFK + +++ I + +R G +
Sbjct: 778 SMVAVMDSDTTGKLGFEEFKYLWNNI-------------KKWQGIYKRFETDRSGTIGSN 824
Query: 1238 E 1238
E
Sbjct: 825 E 825
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 36.7 bits (85), Expect = 0.006
Identities = 8/74 (10%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 1170 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN 1229
E ++ MF + + K+++ + ++ + + + + + D N
Sbjct: 6 ERSIIGMIDMFHKY-TRRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKN 64
Query: 1230 RDGHVSLQEYMAFM 1243
D + E+++ +
Sbjct: 65 EDKKIDFSEFLSLL 78
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 37.1 bits (86), Expect = 0.007
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 10/76 (13%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
++ + + F SG + + ++ + G P P I L D
Sbjct: 27 ITVEERAKHDQQFHSLK-PISGFITGDQARN---------FFFQSGLPQPVLAQIWALAD 76
Query: 1228 PNRDGHVSLQEYMAFM 1243
N DG + E+ M
Sbjct: 77 MNNDGRMDQVEFSIAM 92
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 39.4 bits (91), Expect = 0.008
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 1173 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1207
++++ +++ D D+SG +N E + L G+ L
Sbjct: 604 IQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKL 638
Score = 32.5 bits (73), Expect = 1.2
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 1152 MQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVE 1211
+Q L + + R +++ +M D+D SGKL EF +
Sbjct: 553 LQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQ------- 605
Query: 1212 EGQPDPEFEAILDLVDPNRDGHVSLQE 1238
+++ I +D +R G ++ E
Sbjct: 606 ------KYQKIYREIDVDRSGTMNSYE 626
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 34.7 bits (80), Expect = 0.023
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEF-EAILDLV 1226
E AL F + + L++ E K + +L G+ + ++ +
Sbjct: 6 EKALTTMVTTFHKYSGREGSKLTLSRKELK---ELIKKELC---LGEMKESSIDDLMKSL 59
Query: 1227 DPNRDGHVSLQEYMAFM 1243
D N D + +EY F+
Sbjct: 60 DKNSDQEIDFKEYSVFL 76
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A
{Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB:
1eg4_A
Length = 261
Score = 37.0 bits (85), Expect = 0.025
Identities = 22/197 (11%), Positives = 62/197 (31%), Gaps = 28/197 (14%)
Query: 1054 QDENDALRKEFAKHANAFHQWLTETRTSMMEGTGSLEQQLEAIKRKAAEVRSRRSDLK-- 1111
+ + + H W T + + L + R A ++R + L
Sbjct: 18 RAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLD 77
Query: 1112 --KIEDLGAILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQ-HNLEQQIQARNQSGV 1168
+ L++H L Q +D L + + +++ + + V
Sbjct: 78 LLSLSAACDALDQH-------------NLKQNDQPMDILQIINCLTTIYDRLEQEHNNLV 124
Query: 1169 SEDALKE--FSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1226
+ + + + +D ++G++ FK+ + +L + + ++ + V
Sbjct: 125 NVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLC-------KAHLEDKYRYLFKQV 177
Query: 1227 DPNRDGHVSLQEYMAFM 1243
+ G + +
Sbjct: 178 A-SSTGFCDQRRLGLLL 193
Score = 29.3 bits (65), Expect = 7.0
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 1181 KHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEA------ILDLVDPNRDGHV 1234
+H K ++ + +CL + L + +L++ D R G +
Sbjct: 90 QHNLKQNDQPMDILQIINCLTTIYDRLEQEHNNLVNVPLCVDMCLNWLLNVYDTGRTGRI 149
Query: 1235 SLQEYMAFMIS 1245
+ + +IS
Sbjct: 150 RVLSFKTGIIS 160
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 35.3 bits (81), Expect = 0.028
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
E ++ F + LNQ EFK +R + E E I++ +D
Sbjct: 8 ERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEK-VIEHIMEDLD 66
Query: 1228 PNRDGHVSLQEYMAFM 1243
N D +S +E++ M
Sbjct: 67 TNADKQLSFEEFIMLM 82
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 34.4 bits (79), Expect = 0.029
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
+ A+ +F + + L++ E K ++ +L + + Q E +++ +D
Sbjct: 6 DQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQK---ELTIGSKLQDA-EIARLMEDLD 61
Query: 1228 PNRDGHVSLQEYMAFM 1243
N+D V+ QEY+ F+
Sbjct: 62 RNKDQEVNFQEYVTFL 77
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 34.9 bits (80), Expect = 0.053
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 10/76 (13%)
Query: 1168 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
V + +F +GK+ K + P+ I L D
Sbjct: 45 VVGKDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSK---------LPNTVLGKIWKLAD 94
Query: 1228 PNRDGHVSLQEYMAFM 1243
++DG + +E+
Sbjct: 95 VDKDGLLDDEEFALAN 110
>1nub_A Basement membrane protein BM-40; extracellular module, glycoprotein,
anti-adhesive protein, C binding, site-directed
mutagenesis; HET: NAG; 2.80A {Homo sapiens} SCOP:
a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A* 1bmo_A*
Length = 229
Score = 35.7 bits (81), Expect = 0.062
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
Query: 1179 MFKHFDKDKS-GKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1237
F D+ G L+ TE L L L + + D + D +++L
Sbjct: 160 QFGQLDQHPIDGYLSHTE----LAPLRAPL-----IPMEHCTTRFFETCDLDNDKYIALD 210
Query: 1238 E-YMAFMISKET 1248
E F I ++
Sbjct: 211 EWAGCFGIKQKD 222
Score = 30.7 bits (68), Expect = 2.8
Identities = 21/170 (12%), Positives = 41/170 (24%), Gaps = 10/170 (5%)
Query: 1046 ELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMMEGTGSLEQQLEAIKRKAAEVRS 1105
+ K + + + E + L+ + E
Sbjct: 58 HFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDE 117
Query: 1106 RRSDLKKIEDLG-------AILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQ 1158
+ L + + L E + + Q+ QLDQ + + +
Sbjct: 118 DNNLLTEKQKLRVKKIHENEKRLEAGDHPEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTE 177
Query: 1159 QIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLP 1208
R E F F+ D D + E+ C D+
Sbjct: 178 LAPLRAPLIPMEHCTTRF---FETCDLDNDKYIALDEWAGCFGIKQKDID 224
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7
linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 35.0 bits (81), Expect = 0.18
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 13/66 (19%)
Query: 1180 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1239
H D+S + L G P ++ V RDG +
Sbjct: 388 HIHLMGDESACIAYIRITQYLD---------AGGIPR-TAQSEETRVWHRRDGKW---QI 434
Query: 1240 MAFMIS 1245
+ F S
Sbjct: 435 VHFHRS 440
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 35.1 bits (81), Expect = 0.19
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 14 QVEVMQKKFDDFQSDLKANEVRLAEMNEIAMQLMSLGQTEAALKIQTQLQDLNQKWTSLQ 73
Q ++ + ++ ++ N + +IA L E AL I D +QK+
Sbjct: 607 QTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNI---SPDQDQKF---- 659
Query: 74 QLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDL 115
E A ++G + D W D +L +
Sbjct: 660 ----ELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNF 697
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.21
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 10/32 (31%)
Query: 654 QNLKKKHKRLEAELASHQP------AIQNVQE 679
Q LKK L+A L + AI+ E
Sbjct: 20 QALKK----LQASLKLYADDSAPALAIKATME 47
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Length = 93
Score = 32.1 bits (73), Expect = 0.24
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 1170 EDALKEFSMMFKHF--DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
E AL ++ + K + + + K L + +D
Sbjct: 6 EKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIR------KKGADVWFKELD 59
Query: 1228 PNRDGHVSLQEYMAFM 1243
N DG V+ QE++ +
Sbjct: 60 INTDGAVNFQEFLILV 75
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 31.3 bits (71), Expect = 0.53
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 1170 EDALKEFSMMFKHFDKDK--SGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1227
E++++ F F + + L+ EFK + LP + + + + +D
Sbjct: 18 EESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQ---QLPHLLKDVGS--LDEKMKSLD 72
Query: 1228 PNRDGHVSLQEYMAFM 1243
N+D + EY +
Sbjct: 73 VNQDSELKFNEYWRLI 88
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 32.8 bits (75), Expect = 1.0
Identities = 26/174 (14%), Positives = 66/174 (37%), Gaps = 10/174 (5%)
Query: 273 KLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAFLNAE--EVDSK 330
+ + LE + MQL + ++ Q ++ + M+ E + E ++ S
Sbjct: 915 SVERYKKLHIGLEN----KIMQLQRKIDEQN--KEYKSLLEKMNNLEITYSTETEKLRSD 968
Query: 331 TDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLL 390
+ + ++ ++ + + +E+I L+ Q + D + + L
Sbjct: 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL 1028
Query: 391 KEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQ 444
KE ++ E ++ A E+ + +KL T++ D + + ++Q
Sbjct: 1029 KEQNTLLKTEKEELN--RRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 32.0 bits (73), Expect = 1.9
Identities = 23/158 (14%), Positives = 58/158 (36%), Gaps = 6/158 (3%)
Query: 585 DASSIQEKRQSINERYE-RIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGS 643
+ E+ + ++ E +I L + E +L + ++ E ++ E + L
Sbjct: 911 IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL--EITYSTETEKLRSD 968
Query: 644 -DDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLL 702
+ +N + L+ E+A + + Q + + + ++ E EQ + L
Sbjct: 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL 1028
Query: 703 NQAWSELKQLAANRGQKLDESLT--YQHFLAKVEEEEA 738
+ + LK +++ + + K+ EE
Sbjct: 1029 KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK 1066
Score = 31.2 bits (71), Expect = 2.8
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 1026 MEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMMEG 1085
E L L+ +E + + Q+E LRKE + + E
Sbjct: 962 TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT-IEEWADKYKH- 1019
Query: 1086 TGSLEQQLEAIKRKAAEVRSRRSDLK-KIEDLGAILEEHL 1124
EQ + +K + +++ + +L +I D + E +
Sbjct: 1020 --ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 1.2
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 27/90 (30%)
Query: 1027 EALEDTWRNLQKI-IKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMMEG 1085
E++ WR Q+ ++E D A + E R++ K ++Q
Sbjct: 85 ESIRK-WREEQRKRLQELD---AASKVMEQE---WREKAKKDLEEWNQ------------ 125
Query: 1086 TGSLEQQLEAIK---RKAAE--VRSRRSDL 1110
+Q+E K R A + + +D+
Sbjct: 126 --RQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 30.1 bits (67), Expect = 3.8
Identities = 6/74 (8%), Positives = 23/74 (31%), Gaps = 13/74 (17%)
Query: 386 RWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQK 445
+WR + +++ + + + ++E W + + K++
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW------------NQRQSEQVEKNKI 136
Query: 446 H-QAFEAELAANAD 458
+ + + D
Sbjct: 137 NNRIADKAFYQQPD 150
Score = 29.0 bits (64), Expect = 8.0
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 19/93 (20%)
Query: 326 EVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLD 385
+ D T E++ K E+ K + +E A + + + A K +++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRL---QELDAASKVMEQEWREK---AKKDLEE------- 122
Query: 386 RWRLLKEALIEKR---SRLGESQTLQQFSRDAD 415
W + +EK +R+ + QQ DAD
Sbjct: 123 -WNQRQSEQVEKNKINNRIADKAFYQQ--PDAD 152
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane
protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Length = 550
Score = 31.7 bits (71), Expect = 1.7
Identities = 30/212 (14%), Positives = 61/212 (28%), Gaps = 12/212 (5%)
Query: 1034 RNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMMEGTGSLEQQL 1093
+ + KE KE ++ L FAK H + +
Sbjct: 316 YIISYLKKEMPTVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHDF 375
Query: 1094 EAIKRKAAEVRSRRSDL--KKIEDLGAILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMR 1151
++ D+ + I L +L + + + + G
Sbjct: 376 TKFHSLKPKLLEALDDMLAQDIAKLMPLLRQEELESVEAGVAGGAFEGTRMGPFVERGPD 435
Query: 1152 MQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVE 1211
++ + V ++ +F + GKL+ ++ K+ MV
Sbjct: 436 EAIEDGEEGSEDDAEWVVTKDKSKYDEIFYNLA-PADGKLSGSKAKT---------WMVG 485
Query: 1212 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 1243
P+ I L D +RDG + +E+
Sbjct: 486 TKLPNSVLGRIWKLSDVDRDGMLDDEEFALAS 517
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 31.9 bits (73), Expect = 1.9
Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 16/232 (6%)
Query: 380 RKQVLDRWRLLKEALIEKRSRLGESQTLQQFSR---DADEMENWIAEKL----------Q 426
R L +W K+A +E R +++Q F + + E +
Sbjct: 766 RANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSL 825
Query: 427 LATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQAR 486
K + ++ +A Q + + +++ +Q
Sbjct: 826 QTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK--IAVLLQKY 883
Query: 487 LASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLAS 546
+ + T K+ + + A +K+L+ + GE +SL +S
Sbjct: 884 NRILKKLENWATTKSVYLGSN-ETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 942
Query: 547 VQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINE 598
Q + V + D S ++ + + E+ Q I +
Sbjct: 943 AQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 1.9
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 14/62 (22%)
Query: 1078 TRTSMMEGTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDL----------GAILEEHLILD 1127
TR S+ + G L I E + + +E G +L + L+ D
Sbjct: 3 TRESIDKRAGRRGPNLN-IVLTCPECKVYPPKI--VERFSEGDVVCALCGLVLSDKLV-D 58
Query: 1128 NR 1129
R
Sbjct: 59 TR 60
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Length = 825
Score = 30.8 bits (70), Expect = 3.5
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 279 EAREDLE-KAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAF 321
A D A IA ++ + + + +W + +AF
Sbjct: 559 TAMADCLIAARIANALRDMYQKDGKAEMAAQFEGFDWKTEEDAF 602
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 3.8
Identities = 14/135 (10%), Positives = 31/135 (22%), Gaps = 29/135 (21%)
Query: 1129 RYTEHSTVGLAQQWDQLDQLGMRMQHNLEQ------QIQARNQSGVSEDA-----LKEFS 1177
+ + + D ++ L + + G S A +
Sbjct: 1300 SQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATIN 1359
Query: 1178 MMFKHFDKDKSGKLNQTEFKS----------------CLRALGYDL--PMVEEGQPDPEF 1219
M KH + + + K L+ L + D
Sbjct: 1360 EMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKIL 1419
Query: 1220 EAILDLVDPNRDGHV 1234
E ++ P++
Sbjct: 1420 EQFEYVLYPSKTLKT 1434
Score = 30.2 bits (68), Expect = 6.2
Identities = 68/324 (20%), Positives = 111/324 (34%), Gaps = 102/324 (31%)
Query: 73 QQLTAERATQLGSAHEV----QRFHRDVDETKDWIQEKDEALNNNDLGKDLRSV---QAL 125
Q + A+ + GS V Q +DV+ ++I + ++ LG DL ++ A+
Sbjct: 520 QSIYAKYGAK-GSTLIVVPFNQGSKQDVEALIEFIYDTEKNGG---LGWDLDAIIPFAAI 575
Query: 126 QRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTAKANTR 185
+ +L + K E A+R+M T+ KQK TR
Sbjct: 576 PEQG----IELEHIDSK----SEFAHRIMLTNILRMMGCVKKQKS--------ARGIETR 619
Query: 186 ---------------------KE-KL-LDSYDLQRFLSDYRDLMSWIN------SMMGLV 216
E KL L++ R+ S+ SW N +++G
Sbjct: 620 PAQVILPMSPNHGTFGGDGMYSESKLSLETL-FNRWHSE-----SWANQLTVCGAIIGWT 673
Query: 217 SSDEL--ANDVTGAEALLERHQEHRTEIDARTG--TFQ----AFDLFGQQLLQSGHYASV 268
L AN++ AE +E+ G TF AF+L G LL V
Sbjct: 674 RGTGLMSANNII-AEG-IEKM-----------GVRTFSQKEMAFNLLG--LL---TPEVV 715
Query: 269 EI-Q------DKLGNLAEAREDLEKAWIARRMQLDQCLELQLFYRDCEQAENWMSAREAF 321
E+ Q D G L +L++ R +L + E+ R E +
Sbjct: 716 ELCQKSPVMADLNGGLQFV-PELKEFTAKLRKELVETSEV----RKAVSIET--ALEHKV 768
Query: 322 LNAEEVDSKTDNVEALIKKHEDFD 345
+N D+ VE + + D
Sbjct: 769 VNGNSADAAYAQVEIQPRANIQLD 792
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium
channel, alternative splicing, disease epilepsy,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kbi_A
Length = 129
Score = 29.0 bits (65), Expect = 4.7
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 15/72 (20%)
Query: 1158 QQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGY------------ 1205
+ +SED + F +++ FD D + + + AL
Sbjct: 27 SVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADALDPPLLIAKPNKVQL 86
Query: 1206 ---DLPMVEEGQ 1214
DLPMV +
Sbjct: 87 IAMDLPMVSGDR 98
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 29.4 bits (66), Expect = 8.1
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 24/110 (21%)
Query: 575 ADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHR--------QARLNEA-------NT 619
AD LID A + + ++ + R + L + +T
Sbjct: 14 ADELIDKAFRRAEKAASSFKPRGNKVKKARLREELRVRTVSNVVRDNLRKVLERTPGLST 73
Query: 620 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS 669
L +F++++ D +LV D + + + G+ + + LE
Sbjct: 74 LPKFYQELVD---------VLVDRDTFHKAMAGIDWAIRIIRELEERYVE 114
>1f0l_A Diphtheria toxin; bacterial toxin, ADP-ribosylation, transmembrane;
HET: APU; 1.55A {Corynebacterium diphtheriae} SCOP:
b.2.1.1 d.166.1.1 f.1.2.1 PDB: 1ddt_A* 1mdt_A* 1sgk_A
1tox_A* 1xdt_T 4ae0_A 4ae1_A 1dtp_A*
Length = 535
Score = 29.5 bits (65), Expect = 8.3
Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 8/127 (6%)
Query: 389 LLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQA 448
L E L+E+ +G + +++F + + + L A S + N + K +
Sbjct: 109 SLTEPLMEQ---VGTEEFIKRF----GDGASRVVLSLPFAEGSSSVEYIN-NWEQAKALS 160
Query: 449 FEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKL 508
E E+ + AM + + +V + L+ I W+ + KT K L
Sbjct: 161 VELEINFETRGKRGQDAMYEYMAQACAGNRVRRSVGSSLSCINLDWDVIRDKTKTKIESL 220
Query: 509 KEANKQR 515
KE +
Sbjct: 221 KEHGPIK 227
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 29.7 bits (66), Expect = 8.9
Identities = 7/93 (7%), Positives = 28/93 (30%), Gaps = 4/93 (4%)
Query: 121 SVQALQRKHEGLERDLAALGDKIRQLDETANRLMQTHPETAEQTYAKQKEINEEWTQLTA 180
+ E + ++ AL ++I ++ ++ H A A+ ++ + +
Sbjct: 403 GLGGTLSFEEKMGSEIKALKEEIEKV----KKIAANHDVFARFITAQLSKMEKALKTTES 458
Query: 181 KANTRKEKLLDSYDLQRFLSDYRDLMSWINSMM 213
+ +++ ++
Sbjct: 459 LRFALQGFFAHRSLQLEVFDFICGASTFLIRVV 491
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 28.3 bits (62), Expect = 9.7
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 1179 MFKHFDKDKS-GKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1237
F D+ G L+ TE L + + D + D +++L
Sbjct: 82 QFGQLDQHPIDGYLSHTELAPLRAPLI---------PMEHCTTRFFETCDLDNDKYIALD 132
Query: 1238 EYMA 1241
E+
Sbjct: 133 EWAG 136
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle,
LEFT-handed twist, membrane fusion, vesicle transport,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 28.1 bits (62), Expect = 9.9
Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 57 KIQTQLQDLNQKWTSLQQLTAERATQLGSAHEVQRFHRDVDETKDWIQEKDEALNNNDLG 116
+Q ++Q ++ L ++ T+ S+ + + T +E +E L +LG
Sbjct: 18 TCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELL--KELG 75
Query: 117 KDLRSVQALQRKHEGLERD 135
+ +++ + L+++
Sbjct: 76 SLPLPLSTSEQRQQRLQKE 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.128 0.358
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,863,048
Number of extensions: 1231620
Number of successful extensions: 4121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3289
Number of HSP's successfully gapped: 619
Length of query: 1321
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1216
Effective length of database: 3,770,088
Effective search space: 4584427008
Effective search space used: 4584427008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (27.9 bits)