BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6494
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|B Chain B, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|C Chain C, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|D Chain D, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|E Chain E, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|F Chain F, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|G Chain G, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|H Chain H, Crystal Structure Of Human Eif2b Alpha
Length = 315
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 73/90 (81%), Gaps = 4/90 (4%)
Query: 2 AVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILK----KENLSKYHPLVDY 57
AVCAK KPFYV+AESFKFVRL+PLNQ+D+P++FK+ + LK ++L + HP VDY
Sbjct: 216 AVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQTGQDLKEEHPWVDY 275
Query: 58 TPPQYITLLFTDLGILTPSAVSDELIKLYL 87
T P ITLLFTDLG+LTPSAVSDELIKLYL
Sbjct: 276 TAPSLITLLFTDLGVLTPSAVSDELIKLYL 305
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 1 MAVCAKELKKPFYVLAESFKF---VRLYPLNQRDLPNEFKFTSSILKK--ENLSKYHPLV 55
+A+ AKE + + AE++KF L + RD P E LK +N+ ++P
Sbjct: 226 IALTAKEHRVWTMIAAETYKFHPETMLVEIEMRD-PTEV-IPEDELKTWPKNIEVWNPAF 283
Query: 56 DYTPPQYITLLFTDLGILTPSAVSDEL 82
D TPP+Y+ ++ T+ GI+ P A D L
Sbjct: 284 DVTPPEYVDVIITERGIIPPYAAIDIL 310
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 1 MAVCAKELKKPFYVLAESFKFV------RLYPLNQRDLPNEFKFTSSILKK--ENLSKYH 52
+A+ AKE + + AE++KF +L + RD P E LK +N+ ++
Sbjct: 235 IALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRD-PTEV-IPEDELKTWPKNIEVWN 292
Query: 53 PLVDYTPPQYITLLFTDLGILTPSAVSDEL 82
P D TPP+Y+ ++ T+ GI+ P A D L
Sbjct: 293 PAFDVTPPEYVDVIITERGIIPPYAAIDIL 322
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 1 MAVCAKELKKPFYVLAESFKFV------RLYPLNQRDLPNEFKFTSSILKK--ENLSKYH 52
+A+ AKE + + AE++KF +L + RD P E LK +N+ ++
Sbjct: 235 IALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRD-PTEV-IPEDELKTWPKNIEVWN 292
Query: 53 PLVDYTPPQYITLLFTDLGILTPSAVSDEL 82
P D TPP+Y+ ++ T+ GI+ P A D L
Sbjct: 293 PAFDVTPPEYVDVIITERGIIPPYAAIDIL 322
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 1 MAVCAKELKKPFYVLAESFKFV------RLYPLNQRDLPNEFKFTSSILKK--ENLSKYH 52
+A+ AKE + + AE++KF +L + RD P E LK +N+ ++
Sbjct: 220 IALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRD-PTEV-IPEDELKTWPKNIEVWN 277
Query: 53 PLVDYTPPQYITLLFTDLGILTPSAVSDEL 82
P D TPP+Y+ ++ T+ GI+ P A D L
Sbjct: 278 PAFDVTPPEYVDVIITERGIIPPYAAIDIL 307
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 1 MAVCAKELKKPFYVLAESFKFV------RLYPLNQRDLPNEFKFTSSILKK--ENLSKYH 52
+A+ AKE + + AE++KF +L + RD P E LK +N+ ++
Sbjct: 219 IALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRD-PTEV-IPEDELKTWPKNIEVWN 276
Query: 53 PLVDYTPPQYITLLFTDLGILTPSAVSDEL 82
P D TPP+Y+ ++ T+ GI+ P A D L
Sbjct: 277 PAFDVTPPEYVDVIITERGIIPPYAAIDIL 306
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 1 MAVCAKELKKPFYVLAESFKFV------RLYPLNQRDLPNEFKFTSSILKK--ENLSKYH 52
+A+ AKE + + AE++KF +L + RD P E LK +N+ ++
Sbjct: 218 IALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRD-PTEV-IPEDELKTWPKNIEVWN 275
Query: 53 PLVDYTPPQYITLLFTDLGILTPSAVSDEL 82
P D TPP+Y+ ++ T+ GI+ P A D L
Sbjct: 276 PAFDVTPPEYVDVIITERGIIPPYAAIDIL 305
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
Length = 276
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKKENLSKYHPLVDYTPP 60
+A+ E PFYV AE++KF +P + + L + N+ + L D TP
Sbjct: 203 LALACHENAIPFYVAAETYKF---HPTLKS---GDVMLMERDLIRGNVRIRNVLFDVTPW 256
Query: 61 QYITLLFTDLGILTP 75
+Y+ + T+LGI+ P
Sbjct: 257 KYVRGIITELGIVIP 271
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 1 MAVCAKELKKPFYVLAESFKF---VRL---YPLNQRDLPNEFKFTSSI-LKKENLSKYHP 53
+A+ A PF+V A F V+ P+ +RD P E + S + N+ ++P
Sbjct: 278 LAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERD-PEEVRQISGVRTAPSNVPVFNP 336
Query: 54 LVDYTPPQYITLLFTDLGILT 74
D TP I+ + T+ GI+T
Sbjct: 337 AFDITPHDLISGIITEKGIMT 357
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSIL---KKE----NLSKYHP 53
++V AK PFYV A F + +D+ E + ++ K++ N+ Y+P
Sbjct: 250 VSVVAKHHNIPFYVAAPKATFD--WERTAKDVVIEERPREELIFCGKRQIAPLNVKVYNP 307
Query: 54 LVDYTPPQYITLLFTDLGILTP 75
D TP + +T L T+ G++ P
Sbjct: 308 AFDPTPLENVTALITEYGVIYP 329
>pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
Thermophilus
pdb|1ATI|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
Thermophilus
Length = 505
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 56 DYTPPQYITLLFTDL 70
D+TPP+Y ++F DL
Sbjct: 158 DWTPPRYFNMMFQDL 172
>pdb|2B4H|A Chain A, Crystal Structure Of The Rhesus Rotavirus Vp5 Antigen
Domain Dimer
pdb|2B4H|B Chain B, Crystal Structure Of The Rhesus Rotavirus Vp5 Antigen
Domain Dimer
pdb|2B4I|A Chain A, Crystal Structure Of The Rhesus Rotavirus Vp5 Antigen
Domain Trimer
pdb|2B4I|B Chain B, Crystal Structure Of The Rhesus Rotavirus Vp5 Antigen
Domain Trimer
pdb|2B4I|C Chain C, Crystal Structure Of The Rhesus Rotavirus Vp5 Antigen
Domain Trimer
Length = 254
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 29 QRDLPNEFKFTSSILKKENLSKYHPLVDYTPPQY 62
RD+ FKF SSI+K L + + P Y
Sbjct: 43 NRDITIRFKFASSIVKSGGLGYKWSEISFKPANY 76
>pdb|2ABY|A Chain A, Solution Structure Of Ta0743 From Thermoplasma Acidophilum
Length = 146
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 9 KKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKKENLSKYHPL 54
+K F +L +S K L+P ++ + +F S + E ++KYH L
Sbjct: 70 QKYFRILFQSKKLSELHPEERKKVREKFDENSRMQYSELMTKYHDL 115
>pdb|1SLQ|A Chain A, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|B Chain B, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|C Chain C, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|D Chain D, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|E Chain E, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|F Chain F, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
Length = 278
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 30 RDLPNEFKFTSSILKKENLSKYHPLVDYTPPQY 62
RD+ FKF SSI+K L + + P Y
Sbjct: 22 RDITIRFKFASSIVKSGGLGYKWSEISFKPANY 54
>pdb|3IYU|X Chain X, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Y Chain Y, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Z Chain Z, Atomic Model Of An Infectious Rotavirus Particle
Length = 776
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 30 RDLPNEFKFTSSILKKENLSKYHPLVDYTPPQY 62
RD+ FKF SSI+K L + + P Y
Sbjct: 269 RDITIRFKFASSIVKSGGLGYKWSEISFKPANY 301
>pdb|1YZY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein
Hi1011, Pfam Duf1537
pdb|1YZY|B Chain B, Crystal Structure Of Haemophilus Influenzae Protein
Hi1011, Pfam Duf1537
Length = 413
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 7 ELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKKENLSKYHPL 54
EL + F V+ + P+N R + N + F +L E+ K HP+
Sbjct: 103 ELNEDFTVITPAL------PVNGRTIFNGYLFVGDVLLSESGMKNHPI 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,621,745
Number of Sequences: 62578
Number of extensions: 93963
Number of successful extensions: 210
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 19
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)