Query psy6494
Match_columns 87
No_of_seqs 112 out of 1021
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:33:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00511 ribulose_e2b2 ribose 99.9 5.3E-27 1.1E-31 168.4 3.4 85 1-86 209-299 (301)
2 PRK08535 translation initiatio 99.9 8.4E-27 1.8E-31 167.9 3.3 85 1-86 214-304 (310)
3 KOG1465|consensus 99.9 1.2E-26 2.7E-31 165.8 3.2 85 1-86 256-346 (353)
4 COG1184 GCD2 Translation initi 99.9 1.7E-26 3.7E-31 165.4 3.4 86 1-87 213-301 (301)
5 PRK05720 mtnA methylthioribose 99.9 4.2E-25 9.1E-30 161.1 3.4 83 1-85 251-340 (344)
6 KOG1466|consensus 99.9 1.6E-24 3.4E-29 152.7 1.3 87 1-87 224-313 (313)
7 TIGR00524 eIF-2B_rel eIF-2B al 99.9 3E-24 6.4E-29 154.4 2.3 74 1-75 223-303 (303)
8 PRK06371 translation initiatio 99.9 5.3E-24 1.1E-28 154.5 2.6 80 1-81 241-327 (329)
9 TIGR00512 salvage_mtnA S-methy 99.9 7.9E-24 1.7E-28 153.7 2.5 74 1-75 251-331 (331)
10 PF01008 IF-2B: Initiation fac 99.9 3.3E-24 7.1E-29 151.4 -0.1 74 1-75 202-282 (282)
11 PRK05772 translation initiatio 99.9 2.1E-23 4.7E-28 152.9 3.5 82 1-85 272-360 (363)
12 PRK08334 translation initiatio 99.9 7.6E-23 1.7E-27 149.6 3.9 83 1-85 264-352 (356)
13 PRK08335 translation initiatio 99.9 1.3E-22 2.8E-27 144.3 3.2 71 1-77 203-273 (275)
14 PRK06036 translation initiatio 99.9 7.4E-23 1.6E-27 149.0 1.4 79 1-81 251-336 (339)
15 COG0182 Predicted translation 99.9 2.8E-22 6.1E-27 144.5 3.2 76 1-77 254-336 (346)
16 PRK06372 translation initiatio 99.8 4.7E-22 1E-26 140.1 2.5 76 1-79 177-252 (253)
17 KOG1467|consensus 99.8 4.5E-22 9.7E-27 149.1 -0.6 84 1-85 453-551 (556)
18 KOG1468|consensus 99.7 1.8E-19 4E-24 128.2 -0.9 81 1-82 259-349 (354)
19 COG1929 Glycerate kinase [Carb 82.7 0.55 1.2E-05 35.3 0.8 22 1-22 308-329 (378)
20 PRK09932 glycerate kinase II; 79.3 0.73 1.6E-05 34.7 0.4 22 1-22 308-329 (381)
21 PF02595 Gly_kinase: Glycerate 76.4 0.95 2E-05 34.1 0.3 23 1-23 308-330 (377)
22 PRK10342 glycerate kinase I; P 75.7 1.2 2.5E-05 33.7 0.6 23 1-23 308-330 (381)
23 TIGR00045 glycerate kinase. Th 75.1 1.1 2.3E-05 33.8 0.3 22 1-22 307-328 (375)
24 PF13336 AcetylCoA_hyd_C: Acet 60.8 4.8 0.0001 26.8 1.1 20 57-76 108-127 (154)
25 PF00391 PEP-utilizers: PEP-ut 60.2 3 6.6E-05 24.1 0.1 16 2-17 46-61 (80)
26 KOG3325|consensus 56.6 5.6 0.00012 26.8 0.9 23 1-23 99-121 (183)
27 PRK05634 nucleosidase; Provisi 47.6 6.5 0.00014 26.4 0.1 16 1-16 137-152 (185)
28 COG4359 Uncharacterized conser 44.4 14 0.0003 25.8 1.3 17 5-21 85-101 (220)
29 COG0238 RpsR Ribosomal protein 38.1 4.2 9.1E-05 24.0 -1.7 28 52-79 25-52 (75)
30 PRK07077 hypothetical protein; 37.7 12 0.00026 26.4 0.3 15 1-15 148-162 (238)
31 CHL00077 rps18 ribosomal prote 37.2 5.7 0.00012 24.0 -1.3 26 53-78 26-51 (86)
32 TIGR00165 S18 ribosomal protei 37.1 5.6 0.00012 23.0 -1.3 25 54-78 17-41 (70)
33 TIGR01704 MTA/SAH-Nsdase 5'-me 34.8 14 0.0003 25.3 0.2 17 1-17 177-193 (228)
34 PF01084 Ribosomal_S18: Riboso 32.5 6.2 0.00013 21.6 -1.5 27 53-79 5-31 (54)
35 PRK06026 5'-methylthioadenosin 30.6 18 0.00039 25.1 0.2 15 1-15 153-167 (212)
36 PRK14697 bifunctional 5'-methy 30.2 19 0.00041 24.9 0.2 15 1-15 176-190 (233)
37 PF04223 CitF: Citrate lyase, 30.2 18 0.0004 28.0 0.2 19 56-74 386-404 (466)
38 COG0775 Pfs Nucleoside phospho 29.9 18 0.0004 25.2 0.1 20 1-20 181-201 (234)
39 TIGR01705 MTA/SAH-nuc-hyp 5'-m 29.7 20 0.00042 25.0 0.2 15 1-15 153-167 (212)
40 PRK08236 hypothetical protein; 29.6 19 0.00041 24.7 0.2 15 1-15 166-180 (212)
41 PRK13401 30S ribosomal protein 29.3 9.5 0.00021 22.8 -1.2 24 55-78 26-49 (82)
42 PRK06714 S-adenosylhomocystein 29.1 20 0.00043 25.0 0.2 17 1-17 177-193 (236)
43 TIGR03468 HpnG hopanoid-associ 28.1 22 0.00047 24.2 0.2 17 1-17 137-153 (212)
44 PRK07164 5'-methylthioadenosin 28.0 22 0.00047 24.6 0.2 16 1-16 166-181 (218)
45 TIGR01584 citF citrate lyase, 27.6 29 0.00064 27.2 0.9 20 56-75 409-429 (492)
46 cd08769 DAP_dppA_2 Peptidase M 27.3 19 0.00042 25.9 -0.2 23 2-24 140-162 (270)
47 cd08770 DAP_dppA_3 Peptidase M 26.4 20 0.00044 25.8 -0.2 22 2-23 140-161 (263)
48 TIGR02428 pcaJ_scoB_fam 3-oxoa 26.3 36 0.00077 23.3 1.0 18 57-74 160-177 (207)
49 cd08663 DAP_dppA_1 Peptidase M 26.2 21 0.00045 25.7 -0.1 22 2-23 140-161 (266)
50 PF02639 DUF188: Uncharacteriz 26.1 31 0.00066 22.1 0.6 21 3-23 4-24 (130)
51 PRK00391 rpsR 30S ribosomal pr 26.0 10 0.00022 22.5 -1.5 26 54-79 26-51 (79)
52 cd00281 DAP_dppA Peptidase M55 25.7 21 0.00046 25.7 -0.2 22 2-23 139-160 (265)
53 PHA02610 uvsY.-2 hypothetical 25.1 1E+02 0.0022 16.9 2.5 27 59-85 10-36 (53)
54 TIGR03664 fut_nucase futalosin 24.2 27 0.00058 24.0 0.1 17 1-17 176-192 (222)
55 PF03796 DnaB_C: DnaB-like hel 22.9 18 0.00039 25.0 -0.9 20 3-22 164-183 (259)
56 PRK06698 bifunctional 5'-methy 22.5 32 0.00069 26.0 0.3 15 1-15 176-190 (459)
57 COG2873 MET17 O-acetylhomoseri 21.9 30 0.00066 26.5 0.0 15 1-15 169-183 (426)
58 PRK06739 pyruvate kinase; Vali 21.3 35 0.00075 25.6 0.2 16 3-18 258-273 (352)
59 COG2057 AtoA Acyl CoA:acetate/ 21.1 45 0.00097 23.6 0.7 22 55-76 163-184 (225)
60 PF04951 Peptidase_M55: D-amin 20.9 35 0.00076 24.6 0.2 23 2-24 140-162 (265)
61 PRK07004 replicative DNA helic 20.7 32 0.00068 26.4 -0.1 18 3-20 358-375 (460)
62 PF05014 Nuc_deoxyrib_tr: Nucl 20.5 60 0.0013 19.5 1.1 17 5-21 85-101 (113)
63 PRK05584 5'-methylthioadenosin 20.2 38 0.00081 22.9 0.2 17 1-17 178-194 (230)
64 COG2362 DppA D-aminopeptidase 20.0 56 0.0012 23.7 1.0 21 2-22 139-159 (274)
No 1
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=99.93 E-value=5.3e-27 Score=168.44 Aligned_cols=85 Identities=26% Similarity=0.424 Sum_probs=76.3
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC------CCccccCCeeeecCCCCccEEEeCCCCcC
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK------ENLSKYHPLVDYTPPQYITLLFTDLGILT 74 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~------~~~~~~np~fD~tPp~lI~~~iTe~G~~~ 74 (87)
+|++||+++|||||+||+|||++.++.++ ...+|.+++.+++.. +++++.||+||+|||+|||++|||.|+++
T Consensus 209 lA~~Ak~~~vPv~V~a~~~K~~~~~~~~~-~~~ie~~~~~ev~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITe~Gi~~ 287 (301)
T TIGR00511 209 LALAAREARVPFMVAAETYKFHPKTITGE-LVEIEERDPTEVLDEEDLKQLGAVKVRNPAFDVTPAEYIDAIITEVGQIP 287 (301)
T ss_pred HHHHHHHhCCCEEEEcccceecCCCCCCC-cccccccCHHHhccccCccCCCCccccCcceecCCHHHCCEEEeCCCcCC
Confidence 58999999999999999999999987654 456888998887643 47899999999999999999999999999
Q ss_pred CchHHHHHHHhh
Q psy6494 75 PSAVSDELIKLY 86 (87)
Q Consensus 75 p~~i~~~l~~~y 86 (87)
|++++++++++|
T Consensus 288 p~~i~~~l~~~~ 299 (301)
T TIGR00511 288 PEMAYTIIKELL 299 (301)
T ss_pred cHHHHHHHHHHc
Confidence 999999999987
No 2
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=99.93 E-value=8.4e-27 Score=167.91 Aligned_cols=85 Identities=27% Similarity=0.461 Sum_probs=76.7
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC------CCccccCCeeeecCCCCccEEEeCCCCcC
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK------ENLSKYHPLVDYTPPQYITLLFTDLGILT 74 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~------~~~~~~np~fD~tPp~lI~~~iTe~G~~~ 74 (87)
+|++||+|+|||||+|++|||++.++.++ +.++|++++.++++. +++++.||+||+|||+|||++|||.|+++
T Consensus 214 ~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~-~~~ie~~~~~ev~~~~~~~~~~~v~v~np~fD~tP~~lIt~iiTe~Gi~~ 292 (310)
T PRK08535 214 IALAAHEARVPFMVAAETYKFSPKTLLGE-LVEIEERDPTEVLPEEILAKLPGVKVRNPAFDVTPPEYIDAIITEIGAIP 292 (310)
T ss_pred HHHHHHHhCCCEEEecccceecCCCCCCC-cceecccCHHHhcccccccCCCCceeeccCcccCCHHHCCEEEeCCCcCC
Confidence 58999999999999999999999987654 556899998887643 57999999999999999999999999999
Q ss_pred CchHHHHHHHhh
Q psy6494 75 PSAVSDELIKLY 86 (87)
Q Consensus 75 p~~i~~~l~~~y 86 (87)
|++++++++++|
T Consensus 293 ps~v~~~~~~~~ 304 (310)
T PRK08535 293 PEMAYTIIKEYL 304 (310)
T ss_pred hHHHHHHHHHHh
Confidence 999999999987
No 3
>KOG1465|consensus
Probab=99.93 E-value=1.2e-26 Score=165.81 Aligned_cols=85 Identities=35% Similarity=0.586 Sum_probs=80.3
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC------CCccccCCeeeecCCCCccEEEeCCCCcC
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK------ENLSKYHPLVDYTPPQYITLLFTDLGILT 74 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~------~~~~~~np~fD~tPp~lI~~~iTe~G~~~ 74 (87)
+|+|||+|.+||+|||+.||+||.+|.+++.+ ++++.+++++++ +.+++.||.|||+||||||+||||.|.+.
T Consensus 256 vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~-~~f~s~~~il~~~e~~~~~~~~v~nP~fDyvppeLVtLFIsNtgg~~ 334 (353)
T KOG1465|consen 256 VALAAKHHSVPVIVLAPMYKLSPLYPTNPDSF-HEFRSPSEILPFSEGDPAGRVDVLNPAFDYVPPELVTLFISNTGGVA 334 (353)
T ss_pred HHHHHHhcCCcEEEecchhhcCCCCCCCHHHH-HhcCCcccccCccccCcccceeecccccccCChhheeEEEecCCCCC
Confidence 58999999999999999999999999999888 699999999875 35789999999999999999999999999
Q ss_pred CchHHHHHHHhh
Q psy6494 75 PSAVSDELIKLY 86 (87)
Q Consensus 75 p~~i~~~l~~~y 86 (87)
||++||++.++|
T Consensus 335 PSyvyRl~~d~Y 346 (353)
T KOG1465|consen 335 PSYVYRLMEDLY 346 (353)
T ss_pred hHHHHHHHHHhc
Confidence 999999999998
No 4
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.7e-26 Score=165.42 Aligned_cols=86 Identities=40% Similarity=0.630 Sum_probs=78.2
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC---CCccccCCeeeecCCCCccEEEeCCCCcCCch
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK---ENLSKYHPLVDYTPPQYITLLFTDLGILTPSA 77 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~---~~~~~~np~fD~tPp~lI~~~iTe~G~~~p~~ 77 (87)
+|++||++++|||||||+|||++++++++... ++++++.++... .+.+++||+||+|||+||+++|||.|+++|+.
T Consensus 213 lA~~A~e~~~Pf~v~aesyKf~p~~~~~~~~~-~~~~~~~e~~~~~~~~~~~v~Np~fD~TP~~~Id~iITe~G~~pp~~ 291 (301)
T COG1184 213 LALAARELRVPFYVVAESYKFVPKTLLDTLVE-IELRDPLEVAREEPLGNLKVRNPAFDVTPPEYIDAIITELGIIPPSS 291 (301)
T ss_pred HHHHHHHhCCCEEEEeeeecccccccCCCcce-eeccChhhccccCcccCccccccccCCCcHHHhheeeecCCCCCchh
Confidence 58999999999999999999999999888776 788888887543 25899999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q psy6494 78 VSDELIKLYL 87 (87)
Q Consensus 78 i~~~l~~~y~ 87 (87)
++++++++|.
T Consensus 292 ~~~i~~e~~~ 301 (301)
T COG1184 292 IYRILRELYG 301 (301)
T ss_pred HHHHHHHhhC
Confidence 9999999984
No 5
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=99.91 E-value=4.2e-25 Score=161.07 Aligned_cols=83 Identities=30% Similarity=0.471 Sum_probs=72.5
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC-------CCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK-------ENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~-------~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|++||+|+|||||+|+++||++..+ +++++++|+|++.|++.. ++++++||+||+|||+|||++|||.|++
T Consensus 251 lAl~Ak~~~vPfyV~a~~~kfd~~~~-~g~~i~iE~r~~~ev~~~~~~~~~~~~v~v~Np~FDvTP~~lIt~iITE~Gv~ 329 (344)
T PRK05720 251 LAIAAKYHGVPFYVAAPSSTIDLTLA-DGKEIPIEERDPEEVTEVGGVRIAPEGVKVYNPAFDVTPAELITGIITEKGIV 329 (344)
T ss_pred HHHHHHHhCCCEEEeccccccCcCCC-CCcccccccCCHHHhcccCCcccCCCCceeecccccCCCHHHCCEEEcCCCcc
Confidence 58999999999999999999999976 456788999999988642 5789999999999999999999999999
Q ss_pred CCchHHHHHHHh
Q psy6494 74 TPSAVSDELIKL 85 (87)
Q Consensus 74 ~p~~i~~~l~~~ 85 (87)
+|+++.. ++++
T Consensus 330 ~p~~~~~-~~~~ 340 (344)
T PRK05720 330 APPDTAN-LAAL 340 (344)
T ss_pred CccHHHH-HHHH
Confidence 9997663 4544
No 6
>KOG1466|consensus
Probab=99.89 E-value=1.6e-24 Score=152.67 Aligned_cols=87 Identities=68% Similarity=1.185 Sum_probs=76.4
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCcccc---CCcccccCCCccccCCeeeecCCCCccEEEeCCCCcCCch
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFK---FTSSILKKENLSKYHPLVDYTPPQYITLLFTDLGILTPSA 77 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~---~~~~v~~~~~~~~~np~fD~tPp~lI~~~iTe~G~~~p~~ 77 (87)
+|++||+.++||||+||+|||.+.||++|.|++.+.+ ....+.+.+++...+|..|||||++|++++||+|+++|+.
T Consensus 224 ~~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~~p~~f~~~~~~~~~~~~e~p~vDYTpPeyiTlL~TDLGvltPSa 303 (313)
T KOG1466|consen 224 VAVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPALPPFKFSRPVPEREDVEREHPTVDYTPPEYLTLLFTDLGVLTPSA 303 (313)
T ss_pred hhhhHHhcCCCeEEEeeccceeeeccCcccccccccCCcccCCCCCcHHhhhhcCCCcccChHHHHHHHHhhccccChhh
Confidence 5899999999999999999999999999999987732 2222322257888999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q psy6494 78 VSDELIKLYL 87 (87)
Q Consensus 78 i~~~l~~~y~ 87 (87)
++++|-++|+
T Consensus 304 VsdELIKlYl 313 (313)
T KOG1466|consen 304 VSDELIKLYL 313 (313)
T ss_pred hhHHHHHhhC
Confidence 9999999996
No 7
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=99.89 E-value=3e-24 Score=154.44 Aligned_cols=74 Identities=31% Similarity=0.448 Sum_probs=65.7
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC-------CCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK-------ENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~-------~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|++||+++|||||+||+|||+++.+ .++++++|++++.|+... ++++++||+||+|||+|||++|||.|++
T Consensus 223 lA~~Ak~~~vPv~V~a~s~K~~~~~~-~g~~i~~e~~~~~ev~~~~~~~~~~~~~~v~np~fD~TP~~lIt~iiTe~Gv~ 301 (303)
T TIGR00524 223 LAVLAKEFRIPFFVAAPLSTFDTKTS-CGEDIVIEERDPEEVAQVGGVRIAPLGVKVYNPAFDITPHDLIDAIITEKGII 301 (303)
T ss_pred HHHHHHHhCCCEEEecccccccCCCC-CccccccccCCHHHhccccCcccCCCCceeecccccCCCHHHCCEEEcCCCcc
Confidence 58999999999999999999999976 446778899988887532 5789999999999999999999999999
Q ss_pred CC
Q psy6494 74 TP 75 (87)
Q Consensus 74 ~p 75 (87)
+|
T Consensus 302 ~p 303 (303)
T TIGR00524 302 TP 303 (303)
T ss_pred Cc
Confidence 87
No 8
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.88 E-value=5.3e-24 Score=154.45 Aligned_cols=80 Identities=29% Similarity=0.384 Sum_probs=68.8
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC-------CCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK-------ENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~-------~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|++||+|+|||||+||+++|..... +++.+++|+|++.|++.. +++++.||+||+|||+|||++|||.|++
T Consensus 241 lAl~Ak~~~VPfyV~a~~~t~d~~~~-~g~~i~iEer~~~ev~~~~g~~~~p~~~~v~Np~FDvTP~elIt~iITE~Gv~ 319 (329)
T PRK06371 241 KAVLAKVNGIPFYVAAPGSTFDFSIK-SGDEIPIEERDENEVLEINGCRIGPQESHARNPAFDVTPNEYVTGFITEYGIF 319 (329)
T ss_pred HHHHHHHcCCCEEEeccccccCCCCC-CcCccccccCCHHHeeccCCeecCCCCccccCcCccCCCHHHCCEEEccCCcc
Confidence 58999999999999999766665433 456788999999988753 4678999999999999999999999999
Q ss_pred CCchHHHH
Q psy6494 74 TPSAVSDE 81 (87)
Q Consensus 74 ~p~~i~~~ 81 (87)
+|++++++
T Consensus 320 ~p~~i~~~ 327 (329)
T PRK06371 320 KPNELWKL 327 (329)
T ss_pred ChHHhhhc
Confidence 99999874
No 9
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=99.88 E-value=7.9e-24 Score=153.73 Aligned_cols=74 Identities=28% Similarity=0.432 Sum_probs=66.4
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC-------CCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK-------ENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~-------~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|++||+++|||||+||++||++..+ +++++++|+|++.|+... ++++++||+||+|||+|||++|||.|++
T Consensus 251 lA~~Ak~~~vPfyV~a~~~kfd~~~~-~~~~i~iE~r~p~ev~~~~g~~~~~~~~~v~Np~FD~TP~~lIt~iITe~Gv~ 329 (331)
T TIGR00512 251 LAVLAKHHGVPFYVAAPTSTIDLETK-DGAEIPIEERPPEEVTHVGGVRIAPPGIDVWNPAFDVTPAELITGIITEKGVI 329 (331)
T ss_pred HHHHHHHhCCCEEEeccccccccCCC-CccccccccCCHHHhcccCCcccCCCCceeecccccCCCHHHCCEEEccCCcc
Confidence 58999999999999999999999875 556788999999887642 5789999999999999999999999999
Q ss_pred CC
Q psy6494 74 TP 75 (87)
Q Consensus 74 ~p 75 (87)
.|
T Consensus 330 ~p 331 (331)
T TIGR00512 330 TP 331 (331)
T ss_pred CC
Confidence 76
No 10
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=99.88 E-value=3.3e-24 Score=151.45 Aligned_cols=74 Identities=51% Similarity=0.878 Sum_probs=58.1
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC-------CCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK-------ENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~-------~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|++||+++|||||+|++|||++.+++++... +|.+++.+++.. +++++.||+||+|||+|||++|||.|++
T Consensus 202 ~a~~Ak~~~vPv~v~~~~~K~~~~~~~~~~~~-~e~~~~~~v~~~~~~~~~~~~v~~~~p~~D~tP~~~It~~iTe~G~~ 280 (282)
T PF01008_consen 202 LALAAKEFNVPVYVLAESYKFSPRYPLDQDSF-NELRDPQEVLPFDGSSIVPENVDVINPLFDYTPPDLITLIITELGIL 280 (282)
T ss_dssp HHHHHHHTT-EEEEE--GGGBETTCSSGGGSS-S-B--THHHHEETTEEESTTTEEEE-BSEEEEEGGG-SEEEETTEEE
T ss_pred HHHHHHhhCCCEEEEcccccccccccccchhh-hhccccceeeccCCcccccceeeccCccEeecCHHHCCEEEcCCCCC
Confidence 58999999999999999999999998887665 788888877543 4889999999999999999999999999
Q ss_pred CC
Q psy6494 74 TP 75 (87)
Q Consensus 74 ~p 75 (87)
+|
T Consensus 281 ~P 282 (282)
T PF01008_consen 281 PP 282 (282)
T ss_dssp -C
T ss_pred Cc
Confidence 98
No 11
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.88 E-value=2.1e-23 Score=152.87 Aligned_cols=82 Identities=34% Similarity=0.516 Sum_probs=69.7
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCccccc-------CCCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILK-------KENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~-------~~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|++||+|+|||||+||++||++..+. +++.+|+|++.|++. .++++++||+||+|||+|||++|||.|++
T Consensus 272 lA~~Ak~~~vPfyV~ap~~k~d~~~~~--~~i~ieer~p~ev~~~~~~~~~~~~~~v~Np~FDvTP~~lIt~iITE~Gv~ 349 (363)
T PRK05772 272 EAVIAHELGIPFYALAPTSTFDLKSDV--NDVKIEERDPNEVRTIRGVPITPEDVNVYNPVFDVTPPKYITGIITEKGII 349 (363)
T ss_pred HHHHHHHhCCCEEEEccccccCccccc--cccccccCCHHHhcccCCceecCCCceeeccCccCCCHHHCCEEEccCCcc
Confidence 589999999999999999999998764 567789999988854 26789999999999999999999999999
Q ss_pred CCchHHHHHHHh
Q psy6494 74 TPSAVSDELIKL 85 (87)
Q Consensus 74 ~p~~i~~~l~~~ 85 (87)
.|+... .++++
T Consensus 350 ~p~~~~-~~~~~ 360 (363)
T PRK05772 350 YPPFHK-NIRKI 360 (363)
T ss_pred CCchHH-HHHHH
Confidence 987533 34443
No 12
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=99.87 E-value=7.6e-23 Score=149.59 Aligned_cols=83 Identities=30% Similarity=0.450 Sum_probs=70.5
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC------CCccccCCeeeecCCCCccEEEeCCCCcC
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK------ENLSKYHPLVDYTPPQYITLLFTDLGILT 74 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~------~~~~~~np~fD~tPp~lI~~~iTe~G~~~ 74 (87)
+|++||+|+|||||+|+++|+++..+ ++.++++|+|++++++.. ++++++||+||+|||+|||++|||.|++.
T Consensus 264 lA~~Ak~~~vPfyV~Ap~~t~d~~~~-~~~~i~iE~r~~~ev~~~~~~~~~~~~~v~NPaFDvTPp~lIt~iITE~Gv~~ 342 (356)
T PRK08334 264 LAVLAKEHGIPFFTVAPLSTIDMSLK-SGKEIPIEERSPEEVLTCGGCRIAPDVDVYNPAFDVTPHKYLTGIITDRGVVW 342 (356)
T ss_pred HHHHHHHhCCCEEEEcccCccCCCCC-CCcccccccCChHHheeccCcccCCCcceecccccCCCHHHCCEEEcCCCccC
Confidence 58999999999999999999998765 455778999999988753 46899999999999999999999999999
Q ss_pred CchHHHHHHHh
Q psy6494 75 PSAVSDELIKL 85 (87)
Q Consensus 75 p~~i~~~l~~~ 85 (87)
|++.. .++++
T Consensus 343 P~~~~-~~~~~ 352 (356)
T PRK08334 343 PPFER-NLKKL 352 (356)
T ss_pred CchHH-HHHHH
Confidence 98644 34443
No 13
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=99.86 E-value=1.3e-22 Score=144.32 Aligned_cols=71 Identities=30% Similarity=0.444 Sum_probs=60.8
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccCCCccccCCeeeecCCCCccEEEeCCCCcCCch
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKKENLSKYHPLVDYTPPQYITLLFTDLGILTPSA 77 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~~~~~~~np~fD~tPp~lI~~~iTe~G~~~p~~ 77 (87)
+|++||+|+|||||+||+|||++.++. .++++|+++.. .+++++.||+||+||++|||++|||.|++.|+.
T Consensus 203 lA~~Ak~~~vPfyV~a~~~k~~~~~~~--~~i~ieer~~~----~~~~~v~Np~FDvTP~~lIt~iITE~Gv~~p~~ 273 (275)
T PRK08335 203 LALACHDNGVPFYVAAETFKFHPELKS--EEVELVERPYA----RQGHRVRNVLFDVTPWKYVRGIITELGILVPPR 273 (275)
T ss_pred HHHHHHHcCCCEEEECccceecccCCC--CCccccccCCC----CCCceecCcCccCCCHHHCCEEEccCCccCCCC
Confidence 589999999999999999999998653 36667766542 368999999999999999999999999998754
No 14
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=99.86 E-value=7.4e-23 Score=149.05 Aligned_cols=79 Identities=28% Similarity=0.325 Sum_probs=68.2
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC-------CCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK-------ENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~-------~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|++||+|+|||||+|+++||+.... ++ ++++|+|++.|+... ++++++||+||+|||+|||++|||.|++
T Consensus 251 lA~~Ak~~~vPfyV~ap~s~~d~~~~-~g-~i~iE~r~~~Ev~~~~~~~~~~~~v~v~Np~FDvTP~~lIt~iITE~Gv~ 328 (339)
T PRK06036 251 HSVLAKEHEIPFYVAAPLSTFDFEGW-EG-SVKIEERDPDELRYCGKTQIAPKDVPVYNPAFDATPMENVTAIITEKGVF 328 (339)
T ss_pred HHHHHHHhCCCEEEEeecCccCCCcC-CC-CcccccCCHHHhccccCcccCCCCceeeCcccccCCHHHCCEEEccCCcc
Confidence 58999999999999999999998754 23 677899999887542 5789999999999999999999999999
Q ss_pred CCchHHHH
Q psy6494 74 TPSAVSDE 81 (87)
Q Consensus 74 ~p~~i~~~ 81 (87)
.|++.+++
T Consensus 329 ~P~~~~~~ 336 (339)
T PRK06036 329 YPPFLLDE 336 (339)
T ss_pred cCCccccc
Confidence 99876543
No 15
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.8e-22 Score=144.46 Aligned_cols=76 Identities=34% Similarity=0.491 Sum_probs=68.1
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC-------CCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK-------ENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~-------~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|.+||+|||||||+++.-.|+.... ++.++++|+|+|.|++.. +++.+.||+||+||++||+++|||+|++
T Consensus 254 lAvlAk~~gIPFyVaAP~sTiD~~~~-~G~~I~IEER~p~Ev~~v~g~riap~~v~~yNPAFDvTP~~lItgIITEkGv~ 332 (346)
T COG0182 254 LAVLAKHHGIPFYVAAPLSTIDFELK-SGEDIPIEERDPEEVLEVGGVRIAPEGVEAYNPAFDVTPPELITGIITEKGVF 332 (346)
T ss_pred HHHHHHHcCCCeEEEcccCccccccC-CCCccceeecCHHHeEeeccEEeCCCCccccCccccCChHHhcceeeecccee
Confidence 48899999999999999888887754 567899999999998653 6899999999999999999999999999
Q ss_pred CCch
Q psy6494 74 TPSA 77 (87)
Q Consensus 74 ~p~~ 77 (87)
.|..
T Consensus 333 ~p~~ 336 (346)
T COG0182 333 TPPF 336 (346)
T ss_pred cCch
Confidence 9973
No 16
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=99.84 E-value=4.7e-22 Score=140.09 Aligned_cols=76 Identities=30% Similarity=0.451 Sum_probs=59.3
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccCCCccccCCeeeecCCCCccEEEeCCCCcCCchHH
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKKENLSKYHPLVDYTPPQYITLLFTDLGILTPSAVS 79 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~~~~~~~np~fD~tPp~lI~~~iTe~G~~~p~~i~ 79 (87)
+|++||+++|||||+|++|||+++++.+...- .+.....+. .++++++||+||+|||+||+++|||.|+++|+++.
T Consensus 177 ~Al~A~~~~vPv~V~~~s~Kf~~~~~~~~~~~-~~~~~~~~~--~~~l~v~Np~FD~TPpelI~~iITE~Gi~~pssV~ 252 (253)
T PRK06372 177 LALCARYLKKPFYSLTISMKIERNFLYSTYPN-FKNHPCSEW--NIDIPCINRYFDKTPPDLIDYYINENGFVKPSDVN 252 (253)
T ss_pred HHHHHHHcCCCEEEEeeccccCCCCccccccc-ccccccccC--CCCCceeCcCcCCCCHHHCCEEEcCCCccccccCC
Confidence 58999999999999999999999876543221 111111111 15789999999999999999999999999999863
No 17
>KOG1467|consensus
Probab=99.83 E-value=4.5e-22 Score=149.12 Aligned_cols=84 Identities=29% Similarity=0.434 Sum_probs=71.9
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCccccc---------------CCCccccCCeeeecCCCCccE
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILK---------------KENLSKYHPLVDYTPPQYITL 65 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~---------------~~~~~~~np~fD~tPp~lI~~ 65 (87)
+|++|++|+|||+||||+|||+.++++|.--. ||.++|.++.. ..++++.|..||.||||||++
T Consensus 453 valvAna~nVPVlVCCE~yKF~eRvQlDsi~~-NEL~dpn~l~~v~g~~~~~~L~~wqn~~~L~~lnl~YD~TPpelIs~ 531 (556)
T KOG1467|consen 453 VALVANAFNVPVLVCCEAYKFHERVQLDSIVS-NELGDPNALQEVRGREDKVALAGWQNNANLKFLNLMYDVTPPELISA 531 (556)
T ss_pred HHHHhcccCCCEEEEechhhhhhhhhhhhhhh-cccCChhhhhhccCcchhhhhhccccccccchhheeeccCcHHHHHH
Confidence 58999999999999999999999998886443 77777663211 147899999999999999999
Q ss_pred EEeCCCCcCCchHHHHHHHh
Q psy6494 66 LFTDLGILTPSAVSDELIKL 85 (87)
Q Consensus 66 ~iTe~G~~~p~~i~~~l~~~ 85 (87)
+|||.|+++|++++..|++.
T Consensus 532 vVTe~g~lp~TSVPvilr~~ 551 (556)
T KOG1467|consen 532 VVTELGMLPPTSVPVILREK 551 (556)
T ss_pred HHhhccccCCccchHHHhhh
Confidence 99999999999999988763
No 18
>KOG1468|consensus
Probab=99.73 E-value=1.8e-19 Score=128.23 Aligned_cols=81 Identities=25% Similarity=0.376 Sum_probs=67.8
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC----------CCccccCCeeeecCCCCccEEEeCC
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK----------ENLSKYHPLVDYTPPQYITLLFTDL 70 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~----------~~~~~~np~fD~tPp~lI~~~iTe~ 70 (87)
+|.+||+||+||||+++.-..+.... .++++.+|+|++.|.... .++.++||+||+||++||++||||.
T Consensus 259 LAv~aKhhgipFyvaaP~tsid~~l~-tG~eIiIEERp~~Em~~v~gg~~v~Iaapgi~vwnPAFDvTPa~LItgIiTe~ 337 (354)
T KOG1468|consen 259 LAVLAKHHGIPFYVAAPFTSIDLSLA-TGDEIIIEERPPAEMTHVTGGEGVRIAAPGINVWNPAFDVTPAELITGIITEK 337 (354)
T ss_pred HHHHHHhcCCceEEeccccccccccC-CCCeeEEeecCchHheeecCCcceEecCCCCCccCccccCCHHHHHHHHhhhc
Confidence 58899999999999999776666554 566777899999886442 5789999999999999999999999
Q ss_pred CCcCCchHHHHH
Q psy6494 71 GILTPSAVSDEL 82 (87)
Q Consensus 71 G~~~p~~i~~~l 82 (87)
|.++|....+.+
T Consensus 338 g~f~~~~~~~~~ 349 (354)
T KOG1468|consen 338 GVFTPEELEEAI 349 (354)
T ss_pred cccChHHhcchh
Confidence 999998765443
No 19
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=82.73 E-value=0.55 Score=35.28 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=18.6
Q ss_pred CccccccCCCcEEEEcccccCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFV 22 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~ 22 (87)
+|.+||.|+|||+++|++.+-.
T Consensus 308 VA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 308 VAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred HHHhhhhhCCCEEEEecccccC
Confidence 5789999999999999985543
No 20
>PRK09932 glycerate kinase II; Provisional
Probab=79.33 E-value=0.73 Score=34.73 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=18.7
Q ss_pred CccccccCCCcEEEEcccccCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFV 22 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~ 22 (87)
||..|+++++||+++|++.+..
T Consensus 308 Va~~A~~~~~Pvi~i~G~~~~~ 329 (381)
T PRK09932 308 VASVAKQFNVPVIGIAGVLGDG 329 (381)
T ss_pred HHHHHHHcCCCEEEEecccCCC
Confidence 4678999999999999997544
No 21
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=76.39 E-value=0.95 Score=34.06 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=16.3
Q ss_pred CccccccCCCcEEEEcccccCcc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVR 23 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~ 23 (87)
||.+|+.++||++++|++.....
T Consensus 308 Va~~A~~~~vPviav~G~~~~~~ 330 (377)
T PF02595_consen 308 VARLAKKHGVPVIAVAGSVDLDA 330 (377)
T ss_dssp HHCCHCCTT--EEEEECEC-TT-
T ss_pred HHHHHHHcCCcEEEEeCCCCCCh
Confidence 47789999999999999866554
No 22
>PRK10342 glycerate kinase I; Provisional
Probab=75.69 E-value=1.2 Score=33.68 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=19.1
Q ss_pred CccccccCCCcEEEEcccccCcc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVR 23 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~ 23 (87)
||..||+++||++++|++.....
T Consensus 308 Va~~A~~~~vPviai~G~~~~~~ 330 (381)
T PRK10342 308 VANVAKKYHKPVIGIAGSLTDDV 330 (381)
T ss_pred HHHHHHHhCCCEEEEecccCCCh
Confidence 46789999999999999875543
No 23
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=75.14 E-value=1.1 Score=33.79 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=18.8
Q ss_pred CccccccCCCcEEEEcccccCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFV 22 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~ 22 (87)
||..|++++||++++|++....
T Consensus 307 Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 307 VAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred HHHHHHHhCCeEEEEecccCCC
Confidence 4678999999999999987554
No 24
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B ....
Probab=60.77 E-value=4.8 Score=26.77 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=14.5
Q ss_pred ecCCCCccEEEeCCCCcCCc
Q psy6494 57 YTPPQYITLLFTDLGILTPS 76 (87)
Q Consensus 57 ~tPp~lI~~~iTe~G~~~p~ 76 (87)
.+|...++.+|||.|+..-.
T Consensus 108 t~~r~dvd~VVTEyGvA~Lr 127 (154)
T PF13336_consen 108 TTPRHDVDYVVTEYGVADLR 127 (154)
T ss_dssp SB-TTT-SEEEETTEEEE-T
T ss_pred ccCcccCCEEEcCCEEEEeC
Confidence 57889999999999987543
No 25
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=60.16 E-value=3 Score=24.13 Aligned_cols=16 Identities=38% Similarity=0.343 Sum_probs=13.5
Q ss_pred ccccccCCCcEEEEcc
Q psy6494 2 AVCAKELKKPFYVLAE 17 (87)
Q Consensus 2 A~~Ak~~~vPv~v~a~ 17 (87)
|.+||++++|.++-+.
T Consensus 46 aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 46 AILARELGIPAIVGVG 61 (80)
T ss_dssp HHHHHHTT-EEEESTT
T ss_pred HHHHHHcCCCEEEeec
Confidence 6789999999999886
No 26
>KOG3325|consensus
Probab=56.62 E-value=5.6 Score=26.82 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.7
Q ss_pred CccccccCCCcEEEEcccccCcc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVR 23 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~ 23 (87)
+|++||+.++-..+...+|||.-
T Consensus 99 L~~LaRqldvDILl~G~Th~f~A 121 (183)
T KOG3325|consen 99 LALLARQLDVDILLTGHTHKFEA 121 (183)
T ss_pred HHHHHHhcCCcEEEeCCceeEEE
Confidence 47899999999999999999974
No 27
>PRK05634 nucleosidase; Provisional
Probab=47.63 E-value=6.5 Score=26.41 Aligned_cols=16 Identities=25% Similarity=0.357 Sum_probs=13.6
Q ss_pred CccccccCCCcEEEEc
Q psy6494 1 MAVCAKELKKPFYVLA 16 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a 16 (87)
+|..|+.+++||+++=
T Consensus 137 va~va~~~~vPf~~iR 152 (185)
T PRK05634 137 VAAVAAEFGVPCRLVK 152 (185)
T ss_pred HHHHHHHhCCCEEEEE
Confidence 4788999999999873
No 28
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=44.40 E-value=14 Score=25.84 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.8
Q ss_pred cccCCCcEEEEcccccC
Q psy6494 5 AKELKKPFYVLAESFKF 21 (87)
Q Consensus 5 Ak~~~vPv~v~a~~~K~ 21 (87)
+|++++||+|++.-.++
T Consensus 85 ike~di~fiVvSsGm~~ 101 (220)
T COG4359 85 IKEHDIPFIVVSSGMDP 101 (220)
T ss_pred HHHcCCCEEEEeCCCch
Confidence 68999999999887765
No 29
>COG0238 RpsR Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]
Probab=38.08 E-value=4.2 Score=23.95 Aligned_cols=28 Identities=14% Similarity=0.388 Sum_probs=23.7
Q ss_pred CCeeeecCCCCccEEEeCCCCcCCchHH
Q psy6494 52 HPLVDYTPPQYITLLFTDLGILTPSAVS 79 (87)
Q Consensus 52 np~fD~tPp~lI~~~iTe~G~~~p~~i~ 79 (87)
.+..||=.+++..-+|||.|-+.|.-+.
T Consensus 25 ~~~iDYKd~~~L~rfise~GKI~prRiT 52 (75)
T COG0238 25 IEEIDYKDVELLKRFISERGKILPRRIT 52 (75)
T ss_pred CCccCccCHHHHHHHhcccCcccccccc
Confidence 3578898999999999999999997543
No 30
>PRK07077 hypothetical protein; Provisional
Probab=37.66 E-value=12 Score=26.35 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=12.9
Q ss_pred CccccccCCCcEEEE
Q psy6494 1 MAVCAKELKKPFYVL 15 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~ 15 (87)
+|..|+++++||+++
T Consensus 148 vA~va~~~giPf~vi 162 (238)
T PRK07077 148 AAAFAAARGLPFAAC 162 (238)
T ss_pred HHHHHHHcCCCEEEE
Confidence 467889999999987
No 31
>CHL00077 rps18 ribosomal protein S18
Probab=37.19 E-value=5.7 Score=23.98 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=22.9
Q ss_pred CeeeecCCCCccEEEeCCCCcCCchH
Q psy6494 53 PLVDYTPPQYITLLFTDLGILTPSAV 78 (87)
Q Consensus 53 p~fD~tPp~lI~~~iTe~G~~~p~~i 78 (87)
..+||.-.++++-+|||.|-+-|..+
T Consensus 26 ~~iDYKnv~lL~~Fis~~GkIlpRri 51 (86)
T CHL00077 26 DRIDYKNMSLLSRFISEQGKILSRRV 51 (86)
T ss_pred CcCCccCHHHHHHhcCCCCeEcCccc
Confidence 35999999999999999999998754
No 32
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=37.12 E-value=5.6 Score=23.04 Aligned_cols=25 Identities=16% Similarity=0.498 Sum_probs=22.1
Q ss_pred eeeecCCCCccEEEeCCCCcCCchH
Q psy6494 54 LVDYTPPQYITLLFTDLGILTPSAV 78 (87)
Q Consensus 54 ~fD~tPp~lI~~~iTe~G~~~p~~i 78 (87)
.+||--.++++-+|||.|-+-|..+
T Consensus 17 ~iDYKnv~lL~~Fis~~GkIlpRri 41 (70)
T TIGR00165 17 FIDYKDLDLLKKFISERGKILPRRI 41 (70)
T ss_pred cCCccCHHHHHHhcCCCCeEcCCcc
Confidence 4889999999999999999998754
No 33
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=34.75 E-value=14 Score=25.32 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=13.9
Q ss_pred CccccccCCCcEEEEcc
Q psy6494 1 MAVCAKELKKPFYVLAE 17 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~ 17 (87)
+|.+|+.+++||+++=.
T Consensus 177 va~va~~~~ip~~~iR~ 193 (228)
T TIGR01704 177 IAHVCHNFNVPFVVVRA 193 (228)
T ss_pred HHHHHHHhCCCEEEEEE
Confidence 46789999999998743
No 34
>PF01084 Ribosomal_S18: Ribosomal protein S18; InterPro: IPR001648 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S18 is known to be involved in binding the aminoacyl-tRNA complex in Escherichia coli [], and appears to be situated at the tRNA A-site. Experimental evidence has revealed that S18 is well exposed on the surface of the E. coli ribosome, and is a secondary rRNA binding protein []. S18 belongs to a family of ribosomal proteins [] that includes: eubacterial S18; metazoan mitochondrial S18, algal and plant chloroplast S18; and cyanelle S18.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2UXD_R 3I8G_U 3UZ7_U 1N33_R 2XSY_R 3V24_R 3OGY_R 2XUY_R 2XFZ_R 3UXT_R ....
Probab=32.53 E-value=6.2 Score=21.61 Aligned_cols=27 Identities=15% Similarity=0.455 Sum_probs=22.7
Q ss_pred CeeeecCCCCccEEEeCCCCcCCchHH
Q psy6494 53 PLVDYTPPQYITLLFTDLGILTPSAVS 79 (87)
Q Consensus 53 p~fD~tPp~lI~~~iTe~G~~~p~~i~ 79 (87)
-.+||--.++++-|||+.|-+-|..+.
T Consensus 5 ~~idykn~~lL~~Fi~~~GkIl~rr~T 31 (54)
T PF01084_consen 5 EYIDYKNVELLSQFISPTGKILPRRIT 31 (54)
T ss_dssp SSSSSSSHHHHGCGBTTSSSBSTHHHH
T ss_pred CcCCcCCHHHHHHHcCcccceehhhhc
Confidence 457888899999999999999997644
No 35
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=30.61 E-value=18 Score=25.11 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=13.2
Q ss_pred CccccccCCCcEEEE
Q psy6494 1 MAVCAKELKKPFYVL 15 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~ 15 (87)
+|..|..+++||.++
T Consensus 153 vAqVc~~~~vPfl~i 167 (212)
T PRK06026 153 VLRACQAFGVPLIGL 167 (212)
T ss_pred HHHHHHHcCCCEEEE
Confidence 478899999999986
No 36
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=30.22 E-value=19 Score=24.90 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=13.0
Q ss_pred CccccccCCCcEEEE
Q psy6494 1 MAVCAKELKKPFYVL 15 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~ 15 (87)
+|..|+.+++||+++
T Consensus 176 va~v~~~~~vpfl~i 190 (233)
T PRK14697 176 IGHVAYINEVPFLVI 190 (233)
T ss_pred HHHHHHHcCCCEEEE
Confidence 477899999999986
No 37
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=30.21 E-value=18 Score=28.01 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=13.3
Q ss_pred eecCCCCccEEEeCCCCcC
Q psy6494 56 DYTPPQYITLLFTDLGILT 74 (87)
Q Consensus 56 D~tPp~lI~~~iTe~G~~~ 74 (87)
=.||-|-|+.+|||.|+--
T Consensus 386 v~TPGetVDVlVTe~GIAV 404 (466)
T PF04223_consen 386 VTTPGETVDVLVTERGIAV 404 (466)
T ss_dssp -SB-GGG--EEEETTEEEE
T ss_pred EcCCCCceeEEEecCceee
Confidence 4689999999999999854
No 38
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=29.92 E-value=18 Score=25.17 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=15.1
Q ss_pred CccccccCCCcEEEE-ccccc
Q psy6494 1 MAVCAKELKKPFYVL-AESFK 20 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~-a~~~K 20 (87)
||.+|.++++|+.++ |-+.+
T Consensus 181 ia~v~~~~~vP~~~ir~ISD~ 201 (234)
T COG0775 181 IAQVCYRFGVPFLVLRAISDI 201 (234)
T ss_pred HHHHHHHhCCCEEEEEEeccC
Confidence 477899999999987 43433
No 39
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=29.66 E-value=20 Score=24.99 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=13.1
Q ss_pred CccccccCCCcEEEE
Q psy6494 1 MAVCAKELKKPFYVL 15 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~ 15 (87)
+|..|+.+++||.++
T Consensus 153 ia~vc~~~~vpf~~i 167 (212)
T TIGR01705 153 CLRACQLFDVPLIGL 167 (212)
T ss_pred HHHHHHHcCCCEEEE
Confidence 477899999999986
No 40
>PRK08236 hypothetical protein; Provisional
Probab=29.59 E-value=19 Score=24.72 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=12.9
Q ss_pred CccccccCCCcEEEE
Q psy6494 1 MAVCAKELKKPFYVL 15 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~ 15 (87)
+|.+|..+++||.++
T Consensus 166 vA~vc~~~~vPf~~i 180 (212)
T PRK08236 166 VAEAAAAAGLPVLEL 180 (212)
T ss_pred HHHHHHHhCCCEEEE
Confidence 477899999999987
No 41
>PRK13401 30S ribosomal protein S18; Provisional
Probab=29.32 E-value=9.5 Score=22.82 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.3
Q ss_pred eeecCCCCccEEEeCCCCcCCchH
Q psy6494 55 VDYTPPQYITLLFTDLGILTPSAV 78 (87)
Q Consensus 55 fD~tPp~lI~~~iTe~G~~~p~~i 78 (87)
+||--.+++.-+|||.|-+-|.-+
T Consensus 26 iDYKnv~lL~~Fis~~GkIlpRR~ 49 (82)
T PRK13401 26 VDYKDTALLRTFISDRGKIRSRRV 49 (82)
T ss_pred CCccCHHHHHHhcCCCccCcCccc
Confidence 689999999999999999998643
No 42
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=29.10 E-value=20 Score=25.00 Aligned_cols=17 Identities=35% Similarity=0.467 Sum_probs=14.0
Q ss_pred CccccccCCCcEEEEcc
Q psy6494 1 MAVCAKELKKPFYVLAE 17 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~ 17 (87)
+|++|..+++||+++-.
T Consensus 177 vA~vc~~~~vP~l~IR~ 193 (236)
T PRK06714 177 FAYVCQINKKPFLCLKA 193 (236)
T ss_pred HHHHHHHhCCCEEEEEE
Confidence 47889999999998743
No 43
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=28.14 E-value=22 Score=24.21 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=13.9
Q ss_pred CccccccCCCcEEEEcc
Q psy6494 1 MAVCAKELKKPFYVLAE 17 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~ 17 (87)
+|..|+++++||.++.-
T Consensus 137 va~va~~~gip~~~ir~ 153 (212)
T TIGR03468 137 VAAVAAAAGLPFAVIRV 153 (212)
T ss_pred HHHHHHHcCCCEEEEEE
Confidence 36789999999998743
No 44
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=27.95 E-value=22 Score=24.58 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.4
Q ss_pred CccccccCCCcEEEEc
Q psy6494 1 MAVCAKELKKPFYVLA 16 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a 16 (87)
+|.+|+.+++||+++-
T Consensus 166 iaqv~~~~~vpf~~ir 181 (218)
T PRK07164 166 LAQVCFKNKVKFYCIK 181 (218)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 4788999999999863
No 45
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=27.55 E-value=29 Score=27.21 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=17.4
Q ss_pred eecCCCCccEEEeCCCCc-CC
Q psy6494 56 DYTPPQYITLLFTDLGIL-TP 75 (87)
Q Consensus 56 D~tPp~lI~~~iTe~G~~-~p 75 (87)
=.||-+-|+.+|||.|+. .|
T Consensus 409 VtTpr~~Vd~VVTEyGIAvnl 429 (492)
T TIGR01584 409 VITPGESIDVLVTEIGIAINP 429 (492)
T ss_pred EECChhhCCEEEccCEEecCC
Confidence 468999999999999988 44
No 46
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=27.30 E-value=19 Score=25.95 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.3
Q ss_pred ccccccCCCcEEEEcccccCccC
Q psy6494 2 AVCAKELKKPFYVLAESFKFVRL 24 (87)
Q Consensus 2 A~~Ak~~~vPv~v~a~~~K~~~~ 24 (87)
|.+|-++||||..+++--+++..
T Consensus 140 a~~Ag~~gVPV~lVsGDd~~~~e 162 (270)
T cd08769 140 AAYAGEFGVPVVLVAGDSELEKE 162 (270)
T ss_pred HHHHhhcCCCEEEEecCHHHHHH
Confidence 56889999999999998777653
No 47
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=26.36 E-value=20 Score=25.77 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.3
Q ss_pred ccccccCCCcEEEEcccccCcc
Q psy6494 2 AVCAKELKKPFYVLAESFKFVR 23 (87)
Q Consensus 2 A~~Ak~~~vPv~v~a~~~K~~~ 23 (87)
|.+|-++||||..+++--+++.
T Consensus 140 a~~Ag~~gVPV~lvsGD~~~~~ 161 (263)
T cd08770 140 AYTAAYLGVPVVFVSGDAGLCA 161 (263)
T ss_pred HHHHhhcCCCEEEEecCHHHHH
Confidence 5688999999999999888876
No 48
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=26.34 E-value=36 Score=23.35 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=15.4
Q ss_pred ecCCCCccEEEeCCCCcC
Q psy6494 57 YTPPQYITLLFTDLGILT 74 (87)
Q Consensus 57 ~tPp~lI~~~iTe~G~~~ 74 (87)
.|++..+..+|||.|++.
T Consensus 160 ~t~~~~v~~vVTe~gV~~ 177 (207)
T TIGR02428 160 LTGAGCVDRIVTELAVFE 177 (207)
T ss_pred cCCCCcccEEECCCEEEE
Confidence 678888899999999964
No 49
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=26.17 E-value=21 Score=25.74 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.4
Q ss_pred ccccccCCCcEEEEcccccCcc
Q psy6494 2 AVCAKELKKPFYVLAESFKFVR 23 (87)
Q Consensus 2 A~~Ak~~~vPv~v~a~~~K~~~ 23 (87)
|.+|-++||||..+++--+++.
T Consensus 140 a~~Ag~~gVPV~lVsGDd~~~~ 161 (266)
T cd08663 140 AAVAGEYGVPVVLVTGDDAACA 161 (266)
T ss_pred HHHHhhcCCCEEEEecCHHHHH
Confidence 5688999999999999888876
No 50
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=26.08 E-value=31 Score=22.11 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=16.2
Q ss_pred cccccCCCcEEEEcccccCcc
Q psy6494 3 VCAKELKKPFYVLAESFKFVR 23 (87)
Q Consensus 3 ~~Ak~~~vPv~v~a~~~K~~~ 23 (87)
.+|+++++|++++|...=..+
T Consensus 4 ~~a~r~~i~vi~Van~~h~~~ 24 (130)
T PF02639_consen 4 RVAKRYGIPVIFVANYSHRLP 24 (130)
T ss_pred HHHHHHCCEEEEEeCCCccCC
Confidence 479999999999987544443
No 51
>PRK00391 rpsR 30S ribosomal protein S18; Reviewed
Probab=25.98 E-value=10 Score=22.50 Aligned_cols=26 Identities=15% Similarity=0.489 Sum_probs=22.7
Q ss_pred eeeecCCCCccEEEeCCCCcCCchHH
Q psy6494 54 LVDYTPPQYITLLFTDLGILTPSAVS 79 (87)
Q Consensus 54 ~fD~tPp~lI~~~iTe~G~~~p~~i~ 79 (87)
.+||--.++++-+|||.|-+-|..+.
T Consensus 26 ~iDYKnv~lL~~Fis~~GkIlprriT 51 (79)
T PRK00391 26 YIDYKDVELLKKFISERGKILPRRIT 51 (79)
T ss_pred cCCccCHHHHHHhcCCCceEcCcccC
Confidence 48999999999999999999997543
No 52
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=25.69 E-value=21 Score=25.71 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.3
Q ss_pred ccccccCCCcEEEEcccccCcc
Q psy6494 2 AVCAKELKKPFYVLAESFKFVR 23 (87)
Q Consensus 2 A~~Ak~~~vPv~v~a~~~K~~~ 23 (87)
|.+|-++||||..+++--+++.
T Consensus 139 a~~Ag~~gVPV~lvsGDd~~~~ 160 (265)
T cd00281 139 ALTAGYYGVPVVMVAGDAEVCK 160 (265)
T ss_pred HHHHhhcCCCEEEEecCHHHHH
Confidence 5688999999999999888876
No 53
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=25.08 E-value=1e+02 Score=16.86 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=19.9
Q ss_pred CCCCccEEEeCCCCcCCchHHHHHHHh
Q psy6494 59 PPQYITLLFTDLGILTPSAVSDELIKL 85 (87)
Q Consensus 59 Pp~lI~~~iTe~G~~~p~~i~~~l~~~ 85 (87)
|-+=-..+.||.|..-|...+..+.++
T Consensus 10 Pi~~al~v~T~~Gpvh~g~C~~y~~e~ 36 (53)
T PHA02610 10 PIEKALVVETEKGPVHPGPCYNYVEEL 36 (53)
T ss_pred chhhceEEecCCCCCCChhHHHHHHhc
Confidence 334456789999999998877776654
No 54
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=24.23 E-value=27 Score=23.96 Aligned_cols=17 Identities=29% Similarity=0.383 Sum_probs=13.8
Q ss_pred CccccccCCCcEEEEcc
Q psy6494 1 MAVCAKELKKPFYVLAE 17 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~ 17 (87)
+|..|+.+++|+.++-.
T Consensus 176 va~va~~~~vP~~~IR~ 192 (222)
T TIGR03664 176 VALAALRYGVPFLELRG 192 (222)
T ss_pred HHHHHHHhCCCEEEEEe
Confidence 46789999999998843
No 55
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=22.91 E-value=18 Score=24.96 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=16.6
Q ss_pred cccccCCCcEEEEcccccCc
Q psy6494 3 VCAKELKKPFYVLAESFKFV 22 (87)
Q Consensus 3 ~~Ak~~~vPv~v~a~~~K~~ 22 (87)
.+|+++++|+++++..-+-.
T Consensus 164 ~lA~~~~i~vi~~sQlnr~~ 183 (259)
T PF03796_consen 164 ALAKELNIPVIALSQLNREA 183 (259)
T ss_dssp HHHHHHTSEEEEEEEBSGGG
T ss_pred HHHHHcCCeEEEccccChhh
Confidence 57999999999999866554
No 56
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=22.55 E-value=32 Score=26.01 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.9
Q ss_pred CccccccCCCcEEEE
Q psy6494 1 MAVCAKELKKPFYVL 15 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~ 15 (87)
+|+.|+.+++||+++
T Consensus 176 va~va~~~~vp~~~i 190 (459)
T PRK06698 176 IGHVAYINEVPFLVI 190 (459)
T ss_pred HHHHHHHcCCCEEEE
Confidence 477899999999986
No 57
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=21.87 E-value=30 Score=26.54 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=12.7
Q ss_pred CccccccCCCcEEEE
Q psy6494 1 MAVCAKELKKPFYVL 15 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~ 15 (87)
||..||++|+|++|=
T Consensus 169 ia~iAh~~gvpliVD 183 (426)
T COG2873 169 IAEIAHRHGVPLIVD 183 (426)
T ss_pred HHHHHHHcCCcEEEe
Confidence 467899999999974
No 58
>PRK06739 pyruvate kinase; Validated
Probab=21.32 E-value=35 Score=25.56 Aligned_cols=16 Identities=0% Similarity=-0.147 Sum_probs=13.7
Q ss_pred cccccCCCcEEEEccc
Q psy6494 3 VCAKELKKPFYVLAES 18 (87)
Q Consensus 3 ~~Ak~~~vPv~v~a~~ 18 (87)
..|+++|+||++++..
T Consensus 258 ~~c~~~gkPvIvATqm 273 (352)
T PRK06739 258 QECNRTNTYVITATQM 273 (352)
T ss_pred HHHHHhCCCEEEEcch
Confidence 4688999999999874
No 59
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=21.12 E-value=45 Score=23.58 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=16.8
Q ss_pred eeecCCCCccEEEeCCCCcCCc
Q psy6494 55 VDYTPPQYITLLFTDLGILTPS 76 (87)
Q Consensus 55 fD~tPp~lI~~~iTe~G~~~p~ 76 (87)
+=.|....++.+|||+|++...
T Consensus 163 lplt~~~~v~~iiTdl~V~~~~ 184 (225)
T COG2057 163 LPLTGNGCVDRVITDLAVFEFD 184 (225)
T ss_pred ccccCCCCceEEEeccEEEEec
Confidence 3456677789999999988754
No 60
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=20.95 E-value=35 Score=24.56 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=17.4
Q ss_pred ccccccCCCcEEEEcccccCccC
Q psy6494 2 AVCAKELKKPFYVLAESFKFVRL 24 (87)
Q Consensus 2 A~~Ak~~~vPv~v~a~~~K~~~~ 24 (87)
|++|-++||||..+++--+++..
T Consensus 140 a~~Ag~~GVPV~lVsGD~~l~~e 162 (265)
T PF04951_consen 140 AALAGYYGVPVVLVSGDDALCEE 162 (265)
T ss_dssp HHHHHHTT--EEEEEEEHHHHHH
T ss_pred HHHHhhcCCcEEEEeCcHHHHHH
Confidence 57889999999999988777654
No 61
>PRK07004 replicative DNA helicase; Provisional
Probab=20.73 E-value=32 Score=26.40 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.3
Q ss_pred cccccCCCcEEEEccccc
Q psy6494 3 VCAKELKKPFYVLAESFK 20 (87)
Q Consensus 3 ~~Ak~~~vPv~v~a~~~K 20 (87)
.+||++++||+++|..-+
T Consensus 358 ~lAkel~ipVi~lsQLnR 375 (460)
T PRK07004 358 SLAKELDVPVIALSQLNR 375 (460)
T ss_pred HHHHHhCCeEEEEeccCh
Confidence 579999999999997544
No 62
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=20.46 E-value=60 Score=19.49 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=13.8
Q ss_pred cccCCCcEEEEcccccC
Q psy6494 5 AKELKKPFYVLAESFKF 21 (87)
Q Consensus 5 Ak~~~vPv~v~a~~~K~ 21 (87)
|.+.|+|++++++..+-
T Consensus 85 A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 85 AYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHTTSEEEEEECCCCT
T ss_pred HHHCCCEEEEEEcCCcc
Confidence 66789999999877655
No 63
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=20.24 E-value=38 Score=22.93 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=13.6
Q ss_pred CccccccCCCcEEEEcc
Q psy6494 1 MAVCAKELKKPFYVLAE 17 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~ 17 (87)
+|.+|+.+++|+.++-.
T Consensus 178 ~a~va~~~~vp~~~ir~ 194 (230)
T PRK05584 178 IAQVCHEFGVPFVVVRA 194 (230)
T ss_pred HHHHHHHcCCCEEEEEE
Confidence 36789999999998744
No 64
>COG2362 DppA D-aminopeptidase [Amino acid transport and metabolism]
Probab=20.00 E-value=56 Score=23.70 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=17.2
Q ss_pred ccccccCCCcEEEEcccccCc
Q psy6494 2 AVCAKELKKPFYVLAESFKFV 22 (87)
Q Consensus 2 A~~Ak~~~vPv~v~a~~~K~~ 22 (87)
|++|-++||||.++++-.-+.
T Consensus 139 a~laG~ygVPV~~~sGDd~~~ 159 (274)
T COG2362 139 AYLAGEYGVPVALVSGDDVAA 159 (274)
T ss_pred HHHhhccCCcEEEeeCcHHHh
Confidence 678999999999998866443
Done!