Query psy6494
Match_columns 87
No_of_seqs 112 out of 1021
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:33:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a11_A Translation initiation 99.9 1.4E-28 4.9E-33 177.8 4.9 85 1-86 235-326 (338)
2 3ecs_A Translation initiation 99.9 5.7E-28 2E-32 173.4 4.2 87 1-87 215-305 (315)
3 1w2w_B 5-methylthioribose-1-ph 99.9 3.5E-28 1.2E-32 164.3 -1.1 85 1-86 77-191 (191)
4 1t9k_A Probable methylthioribo 99.9 5.1E-26 1.7E-30 165.0 2.9 84 1-86 253-343 (347)
5 2yvk_A Methylthioribose-1-phos 99.9 7.9E-26 2.7E-30 165.3 2.8 84 1-86 278-368 (374)
6 1t5o_A EIF2BD, translation ini 99.9 8.3E-26 2.8E-30 164.1 2.5 83 1-86 250-339 (351)
7 2a0u_A Initiation factor 2B; S 99.9 1.7E-24 5.9E-29 158.6 2.9 76 1-77 282-369 (383)
8 1vb5_A Translation initiation 99.9 1.2E-23 4E-28 148.5 2.2 74 1-80 203-276 (276)
9 3cwc_A Putative glycerate kina 74.5 0.55 1.9E-05 34.3 -0.3 21 1-21 311-331 (383)
10 1to6_A Glycerate kinase; glyce 59.6 2.7 9.2E-05 30.6 0.8 19 1-20 302-320 (371)
11 2z5b_A Protein YPL144W, DMP1; 51.6 2.7 9.2E-05 26.9 -0.3 19 3-22 106-124 (151)
12 2oas_A ATOA, 4-hydroxybutyrate 39.9 9.3 0.00032 28.0 1.0 21 56-76 373-393 (436)
13 3jx9_A Putative phosphoheptose 39.9 5.5 0.00019 25.7 -0.2 22 1-22 96-118 (170)
14 3r8n_R 30S ribosomal protein S 36.2 2.9 9.8E-05 22.3 -1.7 25 55-79 2-26 (55)
15 3eh7_A 4-hydroxybutyrate COA-t 35.1 12 0.00042 27.4 1.0 19 58-76 384-402 (434)
16 3qli_A Coenzyme A transferase; 34.4 14 0.00048 27.5 1.2 20 57-76 403-422 (455)
17 3gk7_A 4-hydroxybutyrate COA-t 33.9 14 0.00049 27.3 1.2 19 58-76 385-403 (448)
18 3i1m_R 30S ribosomal protein S 32.6 3.6 0.00012 23.3 -1.8 26 54-79 20-45 (75)
19 2nvv_A Acetyl-COA hydrolase/tr 30.1 18 0.00062 27.1 1.2 20 57-76 413-432 (506)
20 3rrl_B Succinyl-COA:3-ketoacid 28.4 17 0.00059 24.0 0.7 19 57-75 158-176 (207)
21 3d3u_A 4-hydroxybutyrate COA-t 28.0 20 0.0007 26.0 1.1 20 57-76 380-399 (439)
22 2vqe_R 30S ribosomal protein S 26.3 5 0.00017 23.4 -1.9 26 54-79 31-56 (88)
23 1xr4_A Putative citrate lyase 26.2 17 0.00056 27.3 0.4 22 56-77 427-449 (509)
24 4g4s_O Proteasome chaperone 1; 25.3 11 0.00037 26.4 -0.7 13 56-68 186-198 (276)
25 4eu9_A Succinyl-COA:acetate co 25.3 18 0.00062 26.9 0.5 19 57-75 423-441 (514)
26 2g39_A Acetyl-COA hydrolase; c 24.9 18 0.00062 27.0 0.4 20 57-76 417-436 (497)
27 2hj0_A Putative citrate lyase, 23.7 23 0.00078 26.6 0.8 21 57-77 432-453 (519)
28 3eei_A 5-methylthioadenosine n 23.4 17 0.00057 23.6 -0.0 18 1-18 182-199 (233)
29 1hi9_A Dciaa, dipeptide transp 23.1 21 0.00072 24.8 0.4 23 2-24 138-160 (274)
No 1
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=99.95 E-value=1.4e-28 Score=177.80 Aligned_cols=85 Identities=28% Similarity=0.465 Sum_probs=79.5
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCccccc-------CCCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILK-------KENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~-------~~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|++||+++|||||+||++||++.++. +.++++|+|++.|++. .+++++.||+||+|||+|||++|||.|++
T Consensus 235 lAl~Ak~~~vPfyV~a~~~k~d~~~~~-g~~i~iE~r~~~ev~~~g~~~~w~~~v~v~NPaFDvTP~~lIt~iITE~Gv~ 313 (338)
T 3a11_A 235 IALTAKEHRVWTMIAAETYKFHPETML-GQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGII 313 (338)
T ss_dssp HHHHHHHTTCEEEEECCGGGBCSCCSS-SSCCCCCBCCGGGTSCHHHHTTSCTTEEECCBSEEEECGGGCSEEEETTEEE
T ss_pred HHHHHHHcCCCEEEecccceecccCCC-CcccccccCCHHHcccccccccCCCCceecCcceeccCHHHcCEEecCCCcc
Confidence 589999999999999999999999885 5788899999999875 47899999999999999999999999999
Q ss_pred CCchHHHHHHHhh
Q psy6494 74 TPSAVSDELIKLY 86 (87)
Q Consensus 74 ~p~~i~~~l~~~y 86 (87)
+|++++++|+++|
T Consensus 314 ~p~~v~~~L~e~y 326 (338)
T 3a11_A 314 PPYAAIDILREEF 326 (338)
T ss_dssp CGGGHHHHHHHHH
T ss_pred CchhHHHHHHHHh
Confidence 9999999999998
No 2
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=99.94 E-value=5.7e-28 Score=173.39 Aligned_cols=87 Identities=71% Similarity=1.176 Sum_probs=74.8
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCccccc----CCCccccCCeeeecCCCCccEEEeCCCCcCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILK----KENLSKYHPLVDYTPPQYITLLFTDLGILTPS 76 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~----~~~~~~~np~fD~tPp~lI~~~iTe~G~~~p~ 76 (87)
+|++||+++|||||+||+|||++.++++++++++|++++.+++. .+++++.||+||+|||+|||++|||.|+++|+
T Consensus 215 iAl~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~e~~~~~ev~~~~~~~~~v~v~NP~fDvTP~~lIt~iITe~Gv~~p~ 294 (315)
T 3ecs_A 215 MAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPS 294 (315)
T ss_dssp HHHHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGTC-------------CCBCCCSEEEECGGGCSEEEETTEEECGG
T ss_pred HHHHHHHhCCCEEEEeccccccccCCCCcccCCccccChhhccccccCCCcCcCCCCCccCCCHHHcCEEEcCCCCCCcc
Confidence 58899999999999999999999999999999999999988764 25899999999999999999999999999999
Q ss_pred hHHHHHHHhhC
Q psy6494 77 AVSDELIKLYL 87 (87)
Q Consensus 77 ~i~~~l~~~y~ 87 (87)
+++.+|.++|.
T Consensus 295 ~vs~eLik~~~ 305 (315)
T 3ecs_A 295 AVSDELIKLYL 305 (315)
T ss_dssp GHHHHHHHHHT
T ss_pred hhhHHHHHHHH
Confidence 99999999984
No 3
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=99.93 E-value=3.5e-28 Score=164.30 Aligned_cols=85 Identities=21% Similarity=0.340 Sum_probs=73.6
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCccccc-----------------------------CCCcccc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILK-----------------------------KENLSKY 51 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~-----------------------------~~~~~~~ 51 (87)
+|++||+|+|||||+||++||++.++.+ +++++|+|++.|++. .++++++
T Consensus 77 ~Al~Ak~~~vPf~V~a~~~k~~~~~~~g-~~i~iE~r~~~ev~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 155 (191)
T 1w2w_B 77 LAVICKQFGIKFFVVAPKTTIDNVTETG-DDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVGIAPLEINVW 155 (191)
T ss_dssp HHHHHHHHTCEEEEECCGGGBCSSCCSG-GGCCCCBCCTHHHHEEEEEEBCTTTCCBCBCTTSCBCEEEEECSCTTCEEC
T ss_pred HHHHHHHcCCCEEEecccceeeeccCCc-ceeecccCCHHHhccccCccccccccccccccccccccccccccCCCcccc
Confidence 5899999999999999999999998854 677889998876532 2578899
Q ss_pred CCeeeecCCCCccEEEeCCCCcCCchHHH-HHHHhh
Q psy6494 52 HPLVDYTPPQYITLLFTDLGILTPSAVSD-ELIKLY 86 (87)
Q Consensus 52 np~fD~tPp~lI~~~iTe~G~~~p~~i~~-~l~~~y 86 (87)
||+||+|||+|||++|||.|+++|+.+.+ .|.++|
T Consensus 156 Np~fDvTP~~lIt~iITE~Gv~~ps~~~~~~l~~~~ 191 (191)
T 1w2w_B 156 NPAFDITPHELIDGIITEEGVFTKNSSGEFQLESLF 191 (191)
T ss_dssp CBSEEEECGGGCSEEEETTEEECCCTTSCCCCGGGC
T ss_pred ccccccCCHHHcCEEEecCcccCCCCcchhhHHhhC
Confidence 99999999999999999999999988776 666665
No 4
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=99.91 E-value=5.1e-26 Score=164.99 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=74.2
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCccccc-------CCCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILK-------KENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~-------~~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|++||+|+|||||+||++||++.++. ++++++|+|++.|++. .+++++.||+||+|||+|||++|||.|++
T Consensus 253 lAl~Ak~~~vPfyV~ap~~k~d~~~~~-g~~i~iE~r~~~ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt~iITE~Gv~ 331 (347)
T 1t9k_A 253 LAVLAKRNNIPFYVAAPVSTIDPTIRS-GEEIPIEERRPEEVTHCGGNRIAPEGVKVLNPAFDVTENTLITAIITEKGVI 331 (347)
T ss_dssp HHHHHHHTTCCEEEECCGGGEETTCSS-GGGSCCCBCCTHHHHEETTEECSCTTCEECCBSEEEECGGGCSEEEETTEEE
T ss_pred HHHHHHHcCCCEEEecccceeccccCC-ccccccccCChHhccccCCeeccCCCccccCcccccCCHHHCCEEeccCCcc
Confidence 589999999999999999999999875 4778899999988764 26789999999999999999999999999
Q ss_pred CCchHHHHHHHhh
Q psy6494 74 TPSAVSDELIKLY 86 (87)
Q Consensus 74 ~p~~i~~~l~~~y 86 (87)
+|++.++ |.++|
T Consensus 332 ~p~~~~~-l~~~~ 343 (347)
T 1t9k_A 332 RPPFEEN-IKKIL 343 (347)
T ss_dssp CSSHHHH-HHHHH
T ss_pred CcchHHH-HHHHh
Confidence 9998765 44665
No 5
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=99.91 E-value=7.9e-26 Score=165.32 Aligned_cols=84 Identities=26% Similarity=0.418 Sum_probs=74.0
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCccccc-------CCCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILK-------KENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~-------~~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|++||+++|||||+||++||++.++.+ +++++|+|++.|++. .++++++||+||+|||+|||++|||.|++
T Consensus 278 lAl~Ak~~~vPfyV~ap~~k~d~~~~~g-~~i~iEer~~~Ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt~iITE~Gv~ 356 (374)
T 2yvk_A 278 LAILANAFDIPFFVAAPLSTFDTKVKCG-ADIPIEERDPEEVRQISGVRTAPSNVPVFNPAFDITPHDLISGIITEKGIM 356 (374)
T ss_dssp HHHHHHHTTCCEEEECCGGGEETTCSSG-GGSCCCBCCTHHHHEETTEECSCTTCCBCCBSEEEECGGGCSEEEETTEEE
T ss_pred HHHHHHHcCCCEEEecccceeCccCCCc-cccccccCCHHHhcccCCceecCCCcceeCcceeccCHHHCCEEeccCCcc
Confidence 5899999999999999999999998854 678899999988764 26889999999999999999999999999
Q ss_pred CCchHHHHHHHhh
Q psy6494 74 TPSAVSDELIKLY 86 (87)
Q Consensus 74 ~p~~i~~~l~~~y 86 (87)
+|++.. .|.++|
T Consensus 357 ~P~~~~-~l~~~~ 368 (374)
T 2yvk_A 357 TGNYEE-EIEQLF 368 (374)
T ss_dssp CSCHHH-HHHHHT
T ss_pred CcchHH-HHHHHh
Confidence 999865 455665
No 6
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=99.91 E-value=8.3e-26 Score=164.09 Aligned_cols=83 Identities=28% Similarity=0.396 Sum_probs=73.1
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCccccc-------CCCccccCCeeeecCCCCccEEEeCCCCc
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILK-------KENLSKYHPLVDYTPPQYITLLFTDLGIL 73 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~-------~~~~~~~np~fD~tPp~lI~~~iTe~G~~ 73 (87)
+|++||+++|||||+||++||++. + +++++++|+|++.|++. .+++++.||+||+|||+|||++|||.|++
T Consensus 250 lAl~Ak~~~vPfyV~a~~~k~d~~-~-~g~~i~iEer~~~ev~~~~g~~~~~~~v~v~NPaFDvTP~~lIt~iITE~Gv~ 327 (351)
T 1t5o_A 250 VSVVAKHHNIPFYVAAPKATFDWE-R-TAKDVVIEERPREELIFCGKRQIAPLNVKVYNPAFDPTPLENVTALITEYGVI 327 (351)
T ss_dssp HHHHHHHTTCCEEEECCGGGBCTT-C-CGGGCCCCBCCTHHHHEETTEECSCTTCEECCBSEEEEEGGGCSEEEETTEEE
T ss_pred HHHHHHHcCCCEEEeCccceeccc-c-CCCccccccCCHHHhcccCCeeecCCCcceeCccccCCCHHHCCEEEeCCCcc
Confidence 589999999999999999999999 6 56788899999988764 26789999999999999999999999999
Q ss_pred CCchHHHHHHHhh
Q psy6494 74 TPSAVSDELIKLY 86 (87)
Q Consensus 74 ~p~~i~~~l~~~y 86 (87)
+|++.++ |.++|
T Consensus 328 ~p~~~~~-l~~~~ 339 (351)
T 1t5o_A 328 YPPYEVN-VPKVL 339 (351)
T ss_dssp CSCHHHH-HHHHT
T ss_pred CcchHHH-HHHHH
Confidence 9998764 54554
No 7
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=99.89 E-value=1.7e-24 Score=158.65 Aligned_cols=76 Identities=28% Similarity=0.353 Sum_probs=67.8
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccC---------CC--ccccCCeeeecCCCCcc-EEEe
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKK---------EN--LSKYHPLVDYTPPQYIT-LLFT 68 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~---------~~--~~~~np~fD~tPp~lI~-~~iT 68 (87)
+|++||+|+|||||+||++||++.++.+ +++++|+|++.|++.. ++ ++++||+||+|||+||| ++||
T Consensus 282 lAl~Ak~~~vPfyV~ap~~k~d~~~~~g-~~i~iEer~~~Ev~~~~~~g~~~a~~~~~v~v~NPaFDvTP~~lIt~~iIT 360 (383)
T 2a0u_A 282 LAVSAKFHGVKLYVAAPTTTLDVKTASG-NHVEIEEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITPSELITGGIIT 360 (383)
T ss_dssp HHHHHHHTTCCEEEECCGGGBCTTCCSG-GGSCCCBCCTHHHHBCTTTCCBCSCCCTTEEECCBSEEEECGGGCCSEEEC
T ss_pred HHHHHHHcCCCEEEeCCcceecCcCCCc-cccccccCCHHHhcccccCCceecCCCCceeeecccccccChHHCCcEEEc
Confidence 5899999999999999999999998854 7788999999887543 45 89999999999999999 9999
Q ss_pred CCCCcCCch
Q psy6494 69 DLGILTPSA 77 (87)
Q Consensus 69 e~G~~~p~~ 77 (87)
|.|+++|+.
T Consensus 361 E~Gv~~p~~ 369 (383)
T 2a0u_A 361 EKGVQAPAA 369 (383)
T ss_dssp SSCEECCCS
T ss_pred cCCccCCcc
Confidence 999998754
No 8
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=99.87 E-value=1.2e-23 Score=148.47 Aligned_cols=74 Identities=30% Similarity=0.392 Sum_probs=67.7
Q ss_pred CccccccCCCcEEEEcccccCccCccCCCCCCCccccCCcccccCCCccccCCeeeecCCCCccEEEeCCCCcCCchHHH
Q psy6494 1 MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKKENLSKYHPLVDYTPPQYITLLFTDLGILTPSAVSD 80 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~~~~~~~~~~~~~~e~~~~~~v~~~~~~~~~np~fD~tPp~lI~~~iTe~G~~~p~~i~~ 80 (87)
+|++||++++||||+|+++||++. + ++.++++|+|++.| ++++++||.||+||++|||++|||.|+++|+++++
T Consensus 203 iA~~A~~~~vp~~V~a~~~K~~~~-~-~~~~i~iE~r~~~e----~~v~v~np~fD~tP~~lI~~iITe~Gv~~p~~v~~ 276 (276)
T 1vb5_A 203 LALACHENAIPFYVAAETYKFHPT-L-KSGDVMLMERDLIR----GNVRIRNVLFDVTPWKYVRGIITELGIVIPPRDIQ 276 (276)
T ss_dssp HHHHHHHTTCCEEEECCGGGBCSS-C-CGGGCCCCBCCCEE----TTEECCCBCEEEECGGGCSEEEETTEEECTTTTC-
T ss_pred HHHHHHHcCCCEEEeccccccCcc-c-CccccccccCCccc----cCccccCCCeEecCHHHCCEEEeCCCccCccccCC
Confidence 478999999999999999999998 4 56788899999988 68999999999999999999999999999998763
No 9
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=74.49 E-value=0.55 Score=34.34 Aligned_cols=21 Identities=33% Similarity=0.331 Sum_probs=17.5
Q ss_pred CccccccCCCcEEEEcccccC
Q psy6494 1 MAVCAKELKKPFYVLAESFKF 21 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K~ 21 (87)
+|..||++++||+++|++..-
T Consensus 311 Va~~A~~~~vPviaiaG~~~~ 331 (383)
T 3cwc_A 311 VANIAKRYNKPVIGIAGSLTA 331 (383)
T ss_dssp HHHHHHHTTCCEEEEEEECC-
T ss_pred HHHHHHHhCCCEEEEeCCCCC
Confidence 467899999999999998653
No 10
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=59.56 E-value=2.7 Score=30.60 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=16.4
Q ss_pred CccccccCCCcEEEEccccc
Q psy6494 1 MAVCAKELKKPFYVLAESFK 20 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~~K 20 (87)
+|..||+ ++||+++|++..
T Consensus 302 Va~~A~~-~~PviaiaG~~~ 320 (371)
T 1to6_A 302 VAKRTPV-GVPVVAICGSLV 320 (371)
T ss_dssp HHTTSCT-TCCEEEEESEEC
T ss_pred HHHHHhc-CCCEEEEeCCCC
Confidence 4678999 999999999865
No 11
>2z5b_A Protein YPL144W, DMP1; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_A
Probab=51.58 E-value=2.7 Score=26.95 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=14.9
Q ss_pred cccccCCCcEEEEcccccCc
Q psy6494 3 VCAKELKKPFYVLAESFKFV 22 (87)
Q Consensus 3 ~~Ak~~~vPv~v~a~~~K~~ 22 (87)
++||+++.|+||-|. .+++
T Consensus 106 iLarR~~~P~YVg~S-~~~s 124 (151)
T 2z5b_A 106 IISERFNRPCYVTWS-SLPS 124 (151)
T ss_dssp HHHHHHTSCEEEEEE-ECTT
T ss_pred HHHHHhCCCeEEEee-cccc
Confidence 479999999999884 3444
No 12
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=39.91 E-value=9.3 Score=27.96 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=18.2
Q ss_pred eecCCCCccEEEeCCCCcCCc
Q psy6494 56 DYTPPQYITLLFTDLGILTPS 76 (87)
Q Consensus 56 D~tPp~lI~~~iTe~G~~~p~ 76 (87)
=.||-+.|+.+|||.|+....
T Consensus 373 v~t~~~~v~~vvTE~Gva~l~ 393 (436)
T 2oas_A 373 VVTTRAHVHYIVTEYGAANLK 393 (436)
T ss_dssp EEECTTTCCEEEETTEEEECT
T ss_pred cccCcccCCEEECCCEEEECC
Confidence 468899999999999998764
No 13
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=39.88 E-value=5.5 Score=25.69 Aligned_cols=22 Identities=5% Similarity=0.077 Sum_probs=18.0
Q ss_pred CccccccCCCcEEEEcc-cccCc
Q psy6494 1 MAVCAKELKKPFYVLAE-SFKFV 22 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~-~~K~~ 22 (87)
+|+.||+.|+||++++. .+|=+
T Consensus 96 ~A~~ake~G~~vIaITs~~~~~~ 118 (170)
T 3jx9_A 96 SLARYDAWHTPYSIITLGDVTET 118 (170)
T ss_dssp HHHHHHHHTCCEEEEESSCCCTT
T ss_pred HHHHHHHCCCcEEEEeCcchhcc
Confidence 47889999999999998 66544
No 14
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=36.18 E-value=2.9 Score=22.32 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.5
Q ss_pred eeecCCCCccEEEeCCCCcCCchHH
Q psy6494 55 VDYTPPQYITLLFTDLGILTPSAVS 79 (87)
Q Consensus 55 fD~tPp~lI~~~iTe~G~~~p~~i~ 79 (87)
.||--.++++-+|||.|-+-|..+.
T Consensus 2 iDYknv~lL~~Fis~~GkIlprr~T 26 (55)
T 3r8n_R 2 IDYKDIATLKNYITESGKIVPSRIT 26 (55)
T ss_dssp CCTTCHHHHGGGBCTTCCBCCHHHH
T ss_pred CCccCHHHHHHHcCCCCCCcCcccc
Confidence 4777788899999999999987543
No 15
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=35.12 E-value=12 Score=27.40 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.7
Q ss_pred cCCCCccEEEeCCCCcCCc
Q psy6494 58 TPPQYITLLFTDLGILTPS 76 (87)
Q Consensus 58 tPp~lI~~~iTe~G~~~p~ 76 (87)
||-+.++.+|||.|+....
T Consensus 384 ~~~~~v~~vVTE~Gva~L~ 402 (434)
T 3eh7_A 384 TLRNEVDYVVTEYGIAQLK 402 (434)
T ss_dssp ECTTTCCEEEETTEEEECT
T ss_pred eCccceeEEEcccEEEECC
Confidence 7888999999999998764
No 16
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=34.43 E-value=14 Score=27.47 Aligned_cols=20 Identities=20% Similarity=0.296 Sum_probs=16.9
Q ss_pred ecCCCCccEEEeCCCCcCCc
Q psy6494 57 YTPPQYITLLFTDLGILTPS 76 (87)
Q Consensus 57 ~tPp~lI~~~iTe~G~~~p~ 76 (87)
.||.+.++.+|||.|+..-.
T Consensus 403 tt~~~~v~~vvTE~Gva~l~ 422 (455)
T 3qli_A 403 TTPRIDTHYIVTEFGAVNLK 422 (455)
T ss_dssp SBCTTTCCEEEETTEEEECT
T ss_pred ccCcccccEEEeccEEEECC
Confidence 46999999999999987643
No 17
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=33.87 E-value=14 Score=27.25 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=15.9
Q ss_pred cCCCCccEEEeCCCCcCCc
Q psy6494 58 TPPQYITLLFTDLGILTPS 76 (87)
Q Consensus 58 tPp~lI~~~iTe~G~~~p~ 76 (87)
||-+.++.+|||.|+..-.
T Consensus 385 t~~~~v~~iVTE~Gva~L~ 403 (448)
T 3gk7_A 385 TSRNDADYVVTEYGIAEMK 403 (448)
T ss_dssp BCTTTCCEEEETTEEEECT
T ss_pred eCcCceEEEEeceEEEEcc
Confidence 6788999999999986643
No 18
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=32.62 E-value=3.6 Score=23.32 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.2
Q ss_pred eeeecCCCCccEEEeCCCCcCCchHH
Q psy6494 54 LVDYTPPQYITLLFTDLGILTPSAVS 79 (87)
Q Consensus 54 ~fD~tPp~lI~~~iTe~G~~~p~~i~ 79 (87)
..||--.++++-+|||.|-+-|..+.
T Consensus 20 ~iDYknv~lL~~Fis~~GkIlprr~T 45 (75)
T 3i1m_R 20 EIDYKDIATLKNYITESGKIVPSRIT 45 (75)
T ss_dssp CCSTTCHHHHGGGBCTTCCBCCHHHH
T ss_pred cCCcCCHHHHHHHcCcCCCCcCcccc
Confidence 47888889999999999999997653
No 19
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=30.11 E-value=18 Score=27.06 Aligned_cols=20 Identities=5% Similarity=0.242 Sum_probs=16.7
Q ss_pred ecCCCCccEEEeCCCCcCCc
Q psy6494 57 YTPPQYITLLFTDLGILTPS 76 (87)
Q Consensus 57 ~tPp~lI~~~iTe~G~~~p~ 76 (87)
.||-+.++.+|||.|+..-.
T Consensus 413 ~~~~~~v~~vVTE~Gva~L~ 432 (506)
T 2nvv_A 413 DHSEHSVKVIISEWGVADLR 432 (506)
T ss_dssp SBCTTTCCEEEETTEEEECT
T ss_pred ccCCCceeEEECCCEEEEcc
Confidence 46788999999999997654
No 20
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=28.41 E-value=17 Score=24.00 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.1
Q ss_pred ecCCCCccEEEeCCCCcCC
Q psy6494 57 YTPPQYITLLFTDLGILTP 75 (87)
Q Consensus 57 ~tPp~lI~~~iTe~G~~~p 75 (87)
+|....++.+|||+|++..
T Consensus 158 ~t~~~~v~~vVTe~gV~~l 176 (207)
T 3rrl_B 158 LTGKGVVHQLITDLAVFEF 176 (207)
T ss_dssp CSBSSCCSEEECSSEEEEE
T ss_pred CCCCCceEEEECCceEEEE
Confidence 4566678999999998764
No 21
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=27.97 E-value=20 Score=26.04 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=16.6
Q ss_pred ecCCCCccEEEeCCCCcCCc
Q psy6494 57 YTPPQYITLLFTDLGILTPS 76 (87)
Q Consensus 57 ~tPp~lI~~~iTe~G~~~p~ 76 (87)
.||-+.++.+|||.|+....
T Consensus 380 ~~~~~~v~~vVTE~gva~l~ 399 (439)
T 3d3u_A 380 TTGRNEVDYVVTEYGVARLR 399 (439)
T ss_dssp -CCSTTCSEEEETTEEEECT
T ss_pred eeCCCcceEEECCCEEEEeC
Confidence 45778999999999999875
No 22
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=26.31 E-value=5 Score=23.35 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=22.6
Q ss_pred eeeecCCCCccEEEeCCCCcCCchHH
Q psy6494 54 LVDYTPPQYITLLFTDLGILTPSAVS 79 (87)
Q Consensus 54 ~fD~tPp~lI~~~iTe~G~~~p~~i~ 79 (87)
.+||--.++++-||||.|-+-|..+.
T Consensus 31 ~iDYKnv~lL~~Fise~GkIlprriT 56 (88)
T 2vqe_R 31 LRDYRNVEVLKRFLSETGKILPRRRT 56 (88)
T ss_dssp TTCTTCHHHHGGGBCSSSCBCCHHHH
T ss_pred cCCcCCHHHHHHHcccCCCCCchhhc
Confidence 37899999999999999999997653
No 23
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=26.20 E-value=17 Score=27.29 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=18.1
Q ss_pred eecCCCCccEEEeCCCCcC-Cch
Q psy6494 56 DYTPPQYITLLFTDLGILT-PSA 77 (87)
Q Consensus 56 D~tPp~lI~~~iTe~G~~~-p~~ 77 (87)
=.||-+.++.+|||.|+.. +..
T Consensus 427 v~t~~~~V~~iVTE~Gva~~l~g 449 (509)
T 1xr4_A 427 TVTPGASVDVLVTDHGIAVNPAR 449 (509)
T ss_dssp CSBCGGGCCEEEETTEEEECTTC
T ss_pred cccCcCeeCEEECCcEEEEcCCC
Confidence 3467889999999999998 653
No 24
>4g4s_O Proteasome chaperone 1; alpha beta, NTN-hydrolase, peptide binding, hydrolase-chaper complex; HET: LDZ; 2.49A {Saccharomyces cerevisiae}
Probab=25.32 E-value=11 Score=26.45 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=11.1
Q ss_pred eecCCCCccEEEe
Q psy6494 56 DYTPPQYITLLFT 68 (87)
Q Consensus 56 D~tPp~lI~~~iT 68 (87)
|..||++||+++.
T Consensus 186 ~L~PP~fITG~~a 198 (276)
T 4g4s_O 186 TLQPPEFITGFIG 198 (276)
T ss_dssp CCCTTCCBCSHHH
T ss_pred CcCCcchhhhHHH
Confidence 7999999998753
No 25
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=25.30 E-value=18 Score=26.92 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=15.0
Q ss_pred ecCCCCccEEEeCCCCcCC
Q psy6494 57 YTPPQYITLLFTDLGILTP 75 (87)
Q Consensus 57 ~tPp~lI~~~iTe~G~~~p 75 (87)
.||-+.++.+|||.|+..-
T Consensus 423 ~~~~~~v~~vVTE~Gva~L 441 (514)
T 4eu9_A 423 DHIMQDAQIFVTEQGLADL 441 (514)
T ss_dssp SBCGGGCCEEEETTEEEEC
T ss_pred cCCCCcCCEEEcCCEEEEe
Confidence 3566779999999998653
No 26
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=24.94 E-value=18 Score=27.00 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=16.6
Q ss_pred ecCCCCccEEEeCCCCcCCc
Q psy6494 57 YTPPQYITLLFTDLGILTPS 76 (87)
Q Consensus 57 ~tPp~lI~~~iTe~G~~~p~ 76 (87)
.||-+.++.+|||.|+..-.
T Consensus 417 ~t~~~~v~~vVTE~gva~l~ 436 (497)
T 2g39_A 417 DHTEHDVDILVTEQGLADLR 436 (497)
T ss_dssp SBCGGGCCEEEETTEEEECT
T ss_pred ecCCCceeEEECCCEEEEcc
Confidence 46788899999999998654
No 27
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=23.74 E-value=23 Score=26.61 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=17.3
Q ss_pred ecCCCCccEEEeCCCCcC-Cch
Q psy6494 57 YTPPQYITLLFTDLGILT-PSA 77 (87)
Q Consensus 57 ~tPp~lI~~~iTe~G~~~-p~~ 77 (87)
.||-+.++.+|||.|+.. +..
T Consensus 432 tt~~~~V~~VVTE~Gva~~l~g 453 (519)
T 2hj0_A 432 ITPGTSVDVVVTEVGIAINPNR 453 (519)
T ss_dssp SBCGGGCCEEECSSCEEECTTC
T ss_pred ccCCCCCCEEECCCEEEECCCC
Confidence 456788999999999998 653
No 28
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1
Probab=23.44 E-value=17 Score=23.61 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=14.6
Q ss_pred CccccccCCCcEEEEccc
Q psy6494 1 MAVCAKELKKPFYVLAES 18 (87)
Q Consensus 1 iA~~Ak~~~vPv~v~a~~ 18 (87)
+|.+|+++++|+.++..-
T Consensus 182 ~a~~a~~~gip~~~ir~I 199 (233)
T 3eei_A 182 IAQTCHQLETPFVIIRAV 199 (233)
T ss_dssp HHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHcCCCEEEEEEE
Confidence 367899999999988753
No 29
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=23.14 E-value=21 Score=24.81 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.1
Q ss_pred ccccccCCCcEEEEcccccCccC
Q psy6494 2 AVCAKELKKPFYVLAESFKFVRL 24 (87)
Q Consensus 2 A~~Ak~~~vPv~v~a~~~K~~~~ 24 (87)
|.+|-++||||..+++--+++..
T Consensus 138 a~~Ag~~gVPV~lvsGDd~~~~e 160 (274)
T 1hi9_A 138 AYVAGYYDVPVLMVAGDDRAAKE 160 (274)
T ss_dssp HHHHHHTTCCEEEEEEEHHHHHH
T ss_pred HHHHhhcCCCEEEEecCHHHHHH
Confidence 56789999999999987777644
Done!