RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6494
         (87 letters)



>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate
           isomerase Ypr118W {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 402

 Score = 78.4 bits (192), Expect = 2e-19
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 31/116 (26%)

Query: 1   MAVCAKELKKPFYVLAESFKFVRLY------PLNQRDLPNEFKFTSSILKK--------- 45
           +AV  K+    F+V+A       +        + +R+ P EFK  +  +           
Sbjct: 288 LAVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEERN-PEEFKVVTGTVINPENGSLILN 346

Query: 46  --------------ENLSKYHPLVDYTPPQYITLLFTDLGILTPSAVSD-ELIKLY 86
                           ++ ++P  D TP + I  + T+ G+ T ++  + +L  L+
Sbjct: 347 ESGEPITGKVGIAPLEINVWNPAFDITPHELIDGIITEEGVFTKNSSGEFQLESLF 402



 Score = 23.7 bits (50), Expect = 3.9
 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 7/29 (24%)

Query: 17 ESFKFVRLYP-------LNQRDLPNEFKF 38
          E+  F R  P       L+Q  LP   K+
Sbjct: 4  EAIVFDRSEPENVSVKVLDQLLLPYTTKY 32


>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
           [TaxId: 5664]}
          Length = 374

 Score = 77.9 bits (191), Expect = 3e-19
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 1   MAVCAKELKKPFYVLAESFKFVRLY------PLNQRD----LPNEFKFTSSILKKENLSK 50
           +AV AK      YV A +              + +R+      N       +    +LS 
Sbjct: 273 LAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTKQRVVADGPHLSI 332

Query: 51  YHPLVDYTPPQYIT-LLFTDLGILTPSAVSD 80
           ++P+ D TP + IT  + T+ G+  P+A + 
Sbjct: 333 WNPVFDITPSELITGGIITEKGVQAPAASAP 363



 Score = 23.6 bits (50), Expect = 4.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 23 RLYPLNQRDLPNEFKF 38
           L  L+QR LP E  F
Sbjct: 18 SLRLLDQRKLPLETVF 33


>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
           isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
          Length = 340

 Score = 74.8 bits (183), Expect = 3e-18
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 1   MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILK-------KENLSKYHP 53
           +AV AK    PFYV A           +  ++P E +    +          E +   +P
Sbjct: 249 LAVLAKRNNIPFYVAAPVSTIDPTIR-SGEEIPIEERRPEEVTHCGGNRIAPEGVKVLNP 307

Query: 54  LVDYTPPQYITLLFTDLGILTPSAVSDELIK 84
             D T    IT + T+ G++ P    +E IK
Sbjct: 308 AFDVTENTLITAIITEKGVIRPP--FEENIK 336


>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 340

 Score = 74.4 bits (182), Expect = 4e-18
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 1   MAVCAKELKKPFYVLAESFKFVRLYPLNQRDLPNEFK-------FTSSILKKENLSKYHP 53
           ++V AK    PFYV A    F   +    +D+  E +            +   N+  Y+P
Sbjct: 249 VSVVAKHHNIPFYVAAPKATFD--WERTAKDVVIEERPREELIFCGKRQIAPLNVKVYNP 306

Query: 54  LVDYTPPQYITLLFTDLGILTPS 76
             D TP + +T L T+ G++ P 
Sbjct: 307 AFDPTPLENVTALITEYGVIYPP 329



 Score = 23.6 bits (50), Expect = 5.0
 Identities = 3/12 (25%), Positives = 7/12 (58%)

Query: 27 LNQRDLPNEFKF 38
          ++Q  LP + + 
Sbjct: 14 IDQTKLPEKLEV 25


>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein
           PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 274

 Score = 68.9 bits (168), Expect = 2e-16
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 16/81 (19%)

Query: 1   MAVCAKELKKPFYVLAESFKFVRLY-----PLNQRDLPNEFKFTSSILKKENLSKYHPLV 55
           +A+   E   PFYV AE++KF          L +RDL            + N+   + L 
Sbjct: 202 LALACHENAIPFYVAAETYKFHPTLKSGDVMLMERDLI-----------RGNVRIRNVLF 250

Query: 56  DYTPPQYITLLFTDLGILTPS 76
           D TP +Y+  + T+LGI+ P 
Sbjct: 251 DVTPWKYVRGIITELGIVIPP 271


>d2gvka1 d.58.4.14 (A:8-316) Hypothetical protein BT1219
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 309

 Score = 23.3 bits (50), Expect = 5.1
 Identities = 2/32 (6%), Positives = 8/32 (25%)

Query: 29  QRDLPNEFKFTSSILKKENLSKYHPLVDYTPP 60
                   +   ++           L+D++  
Sbjct: 259 ASTFSTTRRMLENMFIGSPAGNTDRLLDFSTA 290


>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate
           uridylyltransferase {Escherichia coli [TaxId: 562]}
          Length = 176

 Score = 22.7 bits (48), Expect = 7.0
 Identities = 6/55 (10%), Positives = 20/55 (36%)

Query: 11  PFYVLAESFKFVRLYPLNQRDLPNEFKFTSSILKKENLSKYHPLVDYTPPQYITL 65
                  ++ F   +     D P+  +    +++ ++      ++ ++P    TL
Sbjct: 64  KNPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTL 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.407 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 321,257
Number of extensions: 12632
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 12
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)