Query psy6495
Match_columns 235
No_of_seqs 129 out of 1044
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 19:35:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14342 lipoate-protein ligas 100.0 1.1E-66 2.3E-71 443.5 22.5 208 1-223 2-209 (213)
2 PRK14345 lipoate-protein ligas 100.0 2E-66 4.4E-71 447.7 23.2 207 1-222 8-220 (234)
3 PRK14348 lipoate-protein ligas 100.0 4E-66 8.7E-71 442.2 23.2 211 5-218 3-219 (221)
4 PRK14341 lipoate-protein ligas 100.0 3.6E-65 7.8E-70 434.4 22.6 203 3-218 3-212 (213)
5 PRK14343 lipoate-protein ligas 100.0 3.9E-65 8.4E-70 438.2 22.8 212 3-228 13-229 (235)
6 PRK14344 lipoate-protein ligas 100.0 8.4E-65 1.8E-69 433.5 23.3 207 3-219 17-223 (223)
7 PRK14347 lipoate-protein ligas 100.0 4.9E-64 1.1E-68 425.4 23.1 201 5-218 3-209 (209)
8 COG0321 LipB Lipoate-protein l 100.0 2.6E-64 5.5E-69 424.8 21.0 205 4-221 10-214 (221)
9 PRK14346 lipoate-protein ligas 100.0 6.2E-64 1.3E-68 429.1 22.9 201 4-218 2-229 (230)
10 PRK14349 lipoate-protein ligas 100.0 2.5E-63 5.4E-68 422.9 22.4 200 8-221 3-208 (220)
11 TIGR00214 lipB lipoate-protein 100.0 6.6E-59 1.4E-63 388.0 18.9 175 36-218 10-184 (184)
12 KOG0325|consensus 100.0 1E-48 2.2E-53 328.2 19.1 215 4-225 6-220 (226)
13 PRK03822 lplA lipoate-protein 100.0 6E-31 1.3E-35 239.2 20.6 202 3-222 2-217 (338)
14 TIGR00545 lipoyltrans lipoyltr 100.0 4E-30 8.6E-35 232.8 21.0 201 6-220 2-212 (324)
15 PRK14061 unknown domain/lipoat 100.0 3.1E-30 6.7E-35 245.7 21.2 204 1-222 224-441 (562)
16 COG0095 LplA Lipoate-protein l 100.0 1.2E-27 2.5E-32 209.4 19.8 210 5-227 2-224 (248)
17 KOG3159|consensus 99.9 3.4E-21 7.3E-26 169.3 15.1 202 3-220 9-223 (336)
18 PF03099 BPL_LplA_LipB: Biotin 99.7 7E-17 1.5E-21 125.7 11.6 117 54-172 1-125 (125)
19 PRK08330 biotin--protein ligas 99.6 3.7E-15 8E-20 129.5 13.4 128 81-219 41-168 (236)
20 PRK05935 biotin--protein ligas 99.0 7.6E-09 1.6E-13 87.4 14.1 131 80-219 42-177 (190)
21 TIGR00121 birA_ligase birA, bi 98.9 2.6E-08 5.6E-13 86.6 12.1 130 80-219 38-172 (237)
22 COG0340 BirA Biotin-(acetyl-Co 98.8 3.1E-08 6.6E-13 86.5 10.7 133 80-222 34-172 (238)
23 PTZ00275 biotin-acetyl-CoA-car 98.7 2.6E-07 5.7E-12 82.7 13.5 126 84-219 72-216 (285)
24 PTZ00276 biotin/lipoate protei 98.7 2.6E-07 5.6E-12 81.0 12.9 129 80-218 45-180 (245)
25 PRK11886 bifunctional biotin-- 98.6 7.4E-07 1.6E-11 80.6 12.7 129 81-219 116-251 (319)
26 PRK08477 biotin--protein ligas 98.5 2.7E-06 5.8E-11 73.1 13.3 116 80-217 40-159 (211)
27 PRK06955 biotin--protein ligas 98.3 1.1E-05 2.4E-10 72.6 13.1 133 80-219 77-228 (300)
28 PRK13325 bifunctional biotin-- 98.1 2.8E-05 6E-10 76.2 12.3 128 80-219 122-257 (592)
29 PF04017 DUF366: Domain of unk 95.7 0.13 2.9E-06 42.9 9.8 86 116-218 87-172 (183)
30 COG2029 Uncharacterized conser 95.0 0.26 5.6E-06 40.8 9.1 85 117-218 91-176 (189)
31 KOG1536|consensus 94.6 0.5 1.1E-05 45.9 11.5 135 78-219 423-569 (649)
32 KOG0325|consensus 87.6 0.3 6.4E-06 42.1 1.5 32 72-104 141-172 (226)
33 PF13823 ADH_N_assoc: Alcohol 47.8 13 0.00027 20.7 1.3 13 86-98 4-16 (23)
34 PF09322 DUF1979: Domain of un 45.3 30 0.00065 23.3 3.0 10 87-96 9-18 (58)
35 COG3127 Predicted ABC-type tra 39.7 18 0.00039 36.8 1.9 138 89-234 529-698 (829)
36 COG2333 ComEC Predicted hydrol 32.7 67 0.0015 29.0 4.2 46 50-95 235-281 (293)
37 KOG2840|consensus 27.0 16 0.00035 33.5 -0.7 69 89-164 78-148 (347)
38 COG1166 SpeA Arginine decarbox 26.3 1.6E+02 0.0035 29.3 5.8 66 69-145 292-357 (652)
39 COG0112 GlyA Glycine/serine hy 26.2 48 0.001 31.3 2.2 57 111-170 68-135 (413)
40 PRK12461 UDP-N-acetylglucosami 26.1 1.9E+02 0.004 25.4 5.8 57 157-218 159-217 (255)
41 cd04863 MtLigD_Pol_like MtLigD 25.2 2.7E+02 0.0058 24.4 6.5 45 97-143 104-150 (231)
42 PHA02539 18 tail sheath protei 24.8 92 0.002 31.3 4.0 58 66-126 504-562 (648)
43 PRK11835 hypothetical protein; 21.4 2.9E+02 0.0063 21.4 5.2 61 14-83 50-110 (114)
44 COG3955 Exopolysaccharide bios 20.7 60 0.0013 27.4 1.5 47 69-118 26-72 (211)
45 PF12221 HflK_N: Bacterial mem 20.5 1.1E+02 0.0024 19.4 2.4 22 198-219 19-40 (42)
No 1
>PRK14342 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1.1e-66 Score=443.52 Aligned_cols=208 Identities=31% Similarity=0.529 Sum_probs=192.0
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEe
Q psy6495 1 MTKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKT 80 (235)
Q Consensus 1 m~~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~ 80 (235)
|++++.++++|+++|.+||++|+++++++.. ..+| +|||||||||||+|+++..++ .+...+++|+++
T Consensus 2 ~~~~~~~~~lg~~~Y~~a~~~Q~~l~~~~~~----~~~d--~llllEH~pVyT~Gr~~~~~~------ll~~~~~~v~~~ 69 (213)
T PRK14342 2 MQNKLIVRQLGLQPYEPVWQAMQEFTDTRDE----ETPD--EIWLVEHPPVFTQGQAGKPEH------ILNPGDIPVVQS 69 (213)
T ss_pred CCCeEEEEeCCCcCHHHHHHHHHHHHHHHhC----CCCC--EEEEEcCCCCccCCCCCChhh------ccCCCCCcEEEe
Confidence 4577999999999999999999999988765 3457 999999999999999983222 234569999999
Q ss_pred ccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcE
Q psy6495 81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYI 160 (235)
Q Consensus 81 ~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~v 160 (235)
+|||++|||||||||+|||+||++.+.++++|++.||+++|++|++ |||++.+.++.+|||+++ +||||||+++++|+
T Consensus 70 ~RGG~iTyHGPGQLV~YpIl~L~~~~~~~~~yv~~lE~~vi~~l~~-~gi~~~~~~~~~GVWv~~-~KIaaIGv~v~r~v 147 (213)
T PRK14342 70 DRGGQVTYHGPGQLVMYVLLDLKRLKLGVRQLVTAIEQTVINTLAE-YGIEAHAKPDAPGVYVDG-KKIASLGLRIRRGC 147 (213)
T ss_pred cCCCceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHH-cCCceeecCCCCcCcccC-CEEEEEEEeEecce
Confidence 9999999999999999999999998999999999999999999999 999999988899999999 99999999999999
Q ss_pred EEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcccccc
Q psy6495 161 THHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSE 223 (235)
Q Consensus 161 t~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~ 223 (235)
|+|||||||++||++|+.|+|||++|+.||||++ ++.+++++++++.++++|++.|+....+
T Consensus 148 T~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~-~~~~~~~~~v~~~~~~~f~~~f~~~~~~ 209 (213)
T PRK14342 148 SFHGLALNVNMDLSPFLRINPCGYAGLEMTQLSD-LGGPATVDEVAPRLLAELLALLGYNDQE 209 (213)
T ss_pred eecceeEecCCCchhhCcEecCCCCCCcEeeHHH-hCCCCCHHHHHHHHHHHHHHHhCCcchh
Confidence 9999999999999999999999999999999987 5889999999999999999999976644
No 2
>PRK14345 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2e-66 Score=447.70 Aligned_cols=207 Identities=38% Similarity=0.630 Sum_probs=191.7
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEe
Q psy6495 1 MTKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKT 80 (235)
Q Consensus 1 m~~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~ 80 (235)
|++++.++++|+++|.++|++|+++++++.++ ..+| +|||+|||||||+|++...+ .+...+++|+++
T Consensus 8 ~~~~~~~~~lG~~~Y~~~~~~Q~~l~~~~~~~---~~~d--~llllEH~pVyT~Gr~~~~~-------~l~~~~i~v~~t 75 (234)
T PRK14345 8 STMPIEVRRLGLVDYQEAWDLQRELADARVAG---EGPD--TLLLLEHPAVYTAGKRTEPH-------ERPTDGTPVVDV 75 (234)
T ss_pred cCCceEEEECCCcCHHHHHHHHHHHHHHHhcC---CCCC--EEEEEcCCCCccCCCCCCcc-------ccccCCCcEEEe
Confidence 35668999999999999999999999999874 3567 99999999999999998322 233458999999
Q ss_pred ccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeC------CCCceeeece
Q psy6495 81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLD------DEYKVCAIGV 154 (235)
Q Consensus 81 ~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~------~~rKIa~iG~ 154 (235)
+|||++|||||||||+|||+||++ +.++++|++.||+++|++|++ |||++.+.++.+||||+ + +||||||+
T Consensus 76 dRGG~iTyHGPGQLV~YpIldL~~-~~~v~~yv~~LE~~vI~~l~~-~gi~a~~~~~~~GVWv~~~~~~~~-~KIaaIGv 152 (234)
T PRK14345 76 DRGGKITWHGPGQLVGYPIIKLAE-PLDVVDYVRRLEEALIAVCAD-LGLNAGRVDGRSGVWVPADGGRPD-RKIAAIGI 152 (234)
T ss_pred cCCCceeEeCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHHHHH-cCCceeecCCCCeEEECCCCCCCc-ceEEEEEe
Confidence 999999999999999999999998 689999999999999999999 99999998889999997 5 99999999
Q ss_pred eeeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhccccc
Q psy6495 155 HSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECS 222 (235)
Q Consensus 155 ~~~~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~ 222 (235)
++++|+|||||||||++||++|+.|+|||++|+.||||+++++.++++++|++.++++|++.|+....
T Consensus 153 ~v~r~vT~HG~ALNV~~DL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~~~f~~~~~ 220 (234)
T PRK14345 153 RVSRGVTMHGFALNCDNDLAAFDAIVPCGISDAGVTTLSAELGRTVTVAEVVDPVAAALCDALDGRLP 220 (234)
T ss_pred eeccceeecceEEEeCCChHHhceEEeCCCCCCcEEehhHhhCCCCCHHHHHHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999988899999999999999999999998664
No 3
>PRK14348 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=4e-66 Score=442.16 Aligned_cols=211 Identities=37% Similarity=0.638 Sum_probs=192.2
Q ss_pred eEEEEcCCCCHHHHHHHHHHHHHHHHhccC--CCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEecc
Q psy6495 5 VQLVRLGVVSYSNGIKIQEHYVNKLKTLIS--KPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (235)
Q Consensus 5 ~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~--~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (235)
..++++|+++|.++|++|+++++++.+... ...+| +|||||||||||+|++....+...+.+.+++.|++|++++|
T Consensus 3 ~~~~~lg~~~Y~~a~~~q~~~~~~~~~~~~~~~~~~d--~llllEH~pVyT~G~~~~~~~ll~~~~~l~~~~~~v~~t~R 80 (221)
T PRK14348 3 TITTDWELIPYSEAWSRQTEWFDALVHAKQNGESYEN--RIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDR 80 (221)
T ss_pred EEEEecCCcCHHHHHHHHHHHHHHHHhhhhcCCCCCC--EEEEEcCCCCeeCCcCCCchhccCChhhhcccCCcEEEeCC
Confidence 456899999999999999998887765320 11257 99999999999999998555544456778889999999999
Q ss_pred CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCC----CCceeeeceeeeC
Q psy6495 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDD----EYKVCAIGVHSSL 158 (235)
Q Consensus 83 GGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~----~rKIa~iG~~~~~ 158 (235)
||++|||||||||+|||+||++++.++++|++.||+++|++|++ |||++.+.++.+||||++ ++||||||+++++
T Consensus 81 GG~iTyHGPGQlV~Ypil~L~~~~~~v~~yv~~lE~~vI~~l~~-~gi~~~~~~~~~GVWv~~~~~~~~KIaaIGv~v~r 159 (221)
T PRK14348 81 GGDITYHGPGQLVCYPILNLEEFGLGLKEYVHLLEEAVIRVCAS-YGVVAGRLEKATGVWLEGDTSRARKICAIGVRSSH 159 (221)
T ss_pred CCceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHH-cCCceeecCCCCCEEecCCCCCCCcEEEEeEEecc
Confidence 99999999999999999999999999999999999999999999 999999988899999983 2899999999999
Q ss_pred cEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhc
Q psy6495 159 YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 218 (235)
Q Consensus 159 ~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 218 (235)
|+|||||||||++||++|+.|+|||++|+.||||+++++.++++++|++.++++|++.|+
T Consensus 160 ~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~~g~~~~~~~v~~~l~~~f~~~~~ 219 (221)
T PRK14348 160 YVTMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQELGHSIDMAEVKERLGRELLAALL 219 (221)
T ss_pred ceeecceEEEecCChHHhccCccCCCCCCcEEeeHHHhCCCCCHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999988899999999999999999999886
No 4
>PRK14341 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=3.6e-65 Score=434.45 Aligned_cols=203 Identities=34% Similarity=0.563 Sum_probs=187.4
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEecc
Q psy6495 3 KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (235)
Q Consensus 3 ~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (235)
....++++|+++|.++|++|+++++++.++ ..++ +|||+|||||||+|++...+ +.+...+|+|++++|
T Consensus 3 ~~~~~~~~g~~~Y~~~~~~q~~~~~~~~~~---~~~~--~llllEH~pVyT~G~~~~~~------~ll~~~~i~v~~t~R 71 (213)
T PRK14341 3 PVEWRISDGLVPYPEALAFMEARVAAIAAG---TADE--LVWLLEHPPLYTAGTSAKAE------DLLDPDRFPVYETGR 71 (213)
T ss_pred ceEEEecCCccCHHHHHHHHHHHHHHHhcC---CCCC--EEEEECCCCCeeCCCCCChh------hccCCCCCCEEEeCC
Confidence 345678899999999999999999998875 4567 99999999999999998322 234566999999999
Q ss_pred CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCC-------CCceeeecee
Q psy6495 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDD-------EYKVCAIGVH 155 (235)
Q Consensus 83 GGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~-------~rKIa~iG~~ 155 (235)
||++|||||||||+|||++|++++.++++|++.||+++|++|++ |||++.+.++.+||||++ ++||||||++
T Consensus 72 GG~iTyHGPGQlV~YpIl~L~~~~~~v~~yv~~lE~~iI~~l~~-~gi~~~~~~~~~GVWv~~~~~~~~~~~KIaaIGv~ 150 (213)
T PRK14341 72 GGQYTYHGPGQRVAYVMLDLKRRRRDVRAFVAALEEWIIATLAA-FNIRGERREDRVGVWVRRPDKGSGAEDKIAAIGVR 150 (213)
T ss_pred CcceeEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHH-hCCceEEcCCCCeEEecCccCCCCCCCcEEEEeee
Confidence 99999999999999999999998999999999999999999999 999999999899999984 2899999999
Q ss_pred eeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhc
Q psy6495 156 SSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 218 (235)
Q Consensus 156 ~~~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 218 (235)
+++|+|||||||||++||++|+.|+|||++++.||||++ ++.+++++++++.++++|++.|+
T Consensus 151 v~r~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~-~g~~~~~~~v~~~l~~~f~~~f~ 212 (213)
T PRK14341 151 LRRWVSFHGISINVEPDLSHFSGIVPCGISEHGVTSLVD-LGLPVTMDDVDAALKKAFEKVFG 212 (213)
T ss_pred EecceeccceEEEecCChhhhCcEecCCCCCCcEeeHHH-hCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999987 79999999999999999999985
No 5
>PRK14343 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=3.9e-65 Score=438.16 Aligned_cols=212 Identities=25% Similarity=0.414 Sum_probs=192.3
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEecc
Q psy6495 3 KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (235)
Q Consensus 3 ~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (235)
+++.++++|+++|.++|++|+++++++.. ..+| +|||||||||||+|++...++.. ....|++|++++|
T Consensus 13 ~~~~v~~lG~v~Y~~a~~~q~~~~~~~~~----~~~d--~llllEHppVyT~G~~~~~~~ll-----~~~~~i~v~~tdR 81 (235)
T PRK14343 13 LPVTVRWRGREPYEACFDAMRAFTDARTA----DTPD--EIWLVEHPPVYTLGQAGDPAHLL-----VADSGIPLVKVDR 81 (235)
T ss_pred CceEEEeCCCcCHHHHHHHHHHHHHHHhC----CCCC--EEEEECCCCCeeCCCCCChhhcc-----CCcCCCCEEEeCC
Confidence 45889999999999999999999998765 3457 99999999999999998332211 1346899999999
Q ss_pred CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeC-----CCCceeeeceeee
Q psy6495 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLD-----DEYKVCAIGVHSS 157 (235)
Q Consensus 83 GGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~-----~~rKIa~iG~~~~ 157 (235)
||++|||||||||+|||++|++++.++++|++.||+++|++|++ |||+++++++.+||||+ + +||||||++++
T Consensus 82 GG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~vI~~l~~-~gi~~~~~~~~~GVwv~~~~~~~-~KIaaIGv~v~ 159 (235)
T PRK14343 82 GGQITYHGPGQVVAYLLLDLRRRKLMVRELVTRIEQAVIDTLAA-YNLASERKAGAPGIYVASGPHQG-AKIAALGLKIR 159 (235)
T ss_pred CCceeEeCCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHH-cCCceeecCCCCeEEEeCCCCCC-CeEEEEeeeee
Confidence 99999999999999999999999999999999999999999999 99999999999999998 6 99999999999
Q ss_pred CcEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcccccccCcHH
Q psy6495 158 LYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDE 228 (235)
Q Consensus 158 ~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~~~~~~ 228 (235)
+|+|||||||||++||++|+.|+||||+|+.||||++ +|.++++++|++.++++|.+.|+......++..
T Consensus 160 r~vT~HG~ALNv~~DL~~F~~I~PCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~~~f~~~~~~~~~~~ 229 (235)
T PRK14343 160 NGCSYHGLSLNVKMDLRPFLAINPCGYAGLETVDMAS-LGVAADWADVAQTLARRLIANLDGAAAAADLPQ 229 (235)
T ss_pred cceeecccEEEeCCCchhhCcEECCCCCCCcEeeHHH-hCCCCCHHHHHHHHHHHHHHHhCcccccccCcc
Confidence 9999999999999999999999999999999999955 799999999999999999999988765544433
No 6
>PRK14344 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=8.4e-65 Score=433.49 Aligned_cols=207 Identities=30% Similarity=0.571 Sum_probs=188.0
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEecc
Q psy6495 3 KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (235)
Q Consensus 3 ~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (235)
..+.+.++|+++|.++|++|+++++++... ...+| +|||||||||||+|++...++...+ .++.+++|++++|
T Consensus 17 ~~~~~~~lg~v~Y~~a~~~Q~~~~~~~~~~--~~~~d--~llllEH~pVyT~G~~~~~~~l~~~---~~~~~~~v~~~~R 89 (223)
T PRK14344 17 SAILFEPDNIVPFEDAWKWQKEWQQALIED--PSNPQ--AVWLLEHQLCYTLGRGASEDNLLFS---LNNPPADVFRIDR 89 (223)
T ss_pred ceEEEecCCccCHHHHHHHHHHHHHHHhcC--CCCCC--EEEEECCCCCeeCCCCCChhhccCc---cccCCCcEEEcCC
Confidence 347888999999999999999999988764 24467 9999999999999999833321111 1246899999999
Q ss_pred CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcEEE
Q psy6495 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITH 162 (235)
Q Consensus 83 GGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt~ 162 (235)
||++|||||||||+|||+||++++.++++|++.||+++|++|++ |||++.+.++.+|||+++ +||||||+++++|+|+
T Consensus 90 GG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~ii~~l~~-~gi~~~~~~~~~GVWv~~-~KIaaIGv~v~r~vT~ 167 (223)
T PRK14344 90 GGEVTHHMPGQLVTYLVLDLRRFNKDLNWYLRQLEQVLIDVLAD-LGIDGERLDGLTGVWIGN-KKVASIGIGCRRWITQ 167 (223)
T ss_pred CceeeEECCCcEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHH-cCCceeecCCCCcEEcCC-CeEEEEeEeEecceee
Confidence 99999999999999999999999999999999999999999999 999999998999999999 9999999999999999
Q ss_pred EeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 163 HGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 163 hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
||+||||++||++|+.|+||||+|+.||||+++ +.+++++++++.++++|++.|++
T Consensus 168 HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~-~~~~~~~~v~~~l~~~f~~~f~~ 223 (223)
T PRK14344 168 HGFSLNVDCDLEGFNKIVPCGLEGCQVGRLSDW-IPGLNIKEVKPLLKKSLQERFGL 223 (223)
T ss_pred cceEEecCCCccccCcEEcCCCCCCcEeeHHHH-cCCCCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999874 68999999999999999999964
No 7
>PRK14347 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=4.9e-64 Score=425.37 Aligned_cols=201 Identities=33% Similarity=0.540 Sum_probs=183.8
Q ss_pred eEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEeccCC
Q psy6495 5 VQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGG 84 (235)
Q Consensus 5 ~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~rGG 84 (235)
..++++|+++|++||++|+++++++.++ ..+| +|||+|||||||+|++... .+.+...++||++++|||
T Consensus 3 ~~~~~~g~~~Y~~a~~~q~~~~~~~~~~---~~~d--~llllEH~pVyT~G~~~~~------~~ll~~~~i~v~~t~RGG 71 (209)
T PRK14347 3 RFITIPDFADYQVTLKLMEDYVNKVISD---HEPE--IVYLVEHSEVYTAGTNYKQ------EELLNYGDIPVIYTGRGG 71 (209)
T ss_pred eEEecCCccCHHHHHHHHHHHHHHHhcC---CCCC--EEEEEcCCCCeeCCCCCCh------hhcccccCCcEEEecCCc
Confidence 3458899999999999999999999875 4568 9999999999999998722 223456799999999999
Q ss_pred ceEEEcCCCeEEEEeeecCCC--CCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCC----CCceeeeceeeeC
Q psy6495 85 LITFHGPGQLVAYPIINLKHF--TPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDD----EYKVCAIGVHSSL 158 (235)
Q Consensus 85 g~tyHgpGQLv~y~il~l~~~--~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~----~rKIa~iG~~~~~ 158 (235)
++|||||||||+|||+||+++ ..++++|++.||+++|++|++ |||++.+.++.+||||+. ++||||||+++++
T Consensus 72 ~vTyHGPGQlV~YpIldL~~~~~~~~v~~yv~~lE~~ii~~l~~-~gi~~~~~~~~~GVWv~~~~~~~~KIaaiGv~v~r 150 (209)
T PRK14347 72 KFTFHGPGQRVIYPILNLASPNRHKDLKLYIKMLEEWIINSLNY-FGIKAYIIKDKVGIWVKVRKDEFAKIAAIGVRVRK 150 (209)
T ss_pred ceEEeCCCcEEEEEEEeccccccCCCHHHHHHHHHHHHHHHHHH-cCCceEEcCCCCEEEEcCCCCCCceEEEEeEEEec
Confidence 999999999999999999864 569999999999999999999 999999988999999972 2899999999999
Q ss_pred cEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhc
Q psy6495 159 YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 218 (235)
Q Consensus 159 ~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 218 (235)
|+|+||+||||++||++|+.|+||||+|+.||||++ ++.+++++++++.++++|++.|.
T Consensus 151 ~vT~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~-~g~~~~~~~v~~~l~~~f~~~f~ 209 (209)
T PRK14347 151 WVTYHGVAINISTDLSKFSGIIPCGLENSLVTSLNQ-LGIHVEMSEFDKIIQTEFNKIFK 209 (209)
T ss_pred ceeecceEEEeCCCccccCcEECCCCCCCcEeeHHH-hCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999987 69999999999999999999874
No 8
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-64 Score=424.78 Aligned_cols=205 Identities=35% Similarity=0.575 Sum_probs=190.1
Q ss_pred eeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEeccC
Q psy6495 4 QVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (235)
Q Consensus 4 ~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (235)
...++.+|+++|.++|+.|+++.+++..+ ..+| ++|++||||+||.|+.+..+ +.+...+|||++++||
T Consensus 10 ~~~~~~~Gl~~Y~~a~~~m~~~~~~r~~~---~~~d--~i~lvEHppVyT~G~~~~~e------~l~~~~~ipVv~~~RG 78 (221)
T COG0321 10 IILVRELGLVDYQEAWQLMETFTDARADG---GTPD--EIWLVEHPPVYTAGQAGKAE------HLLMPDDIPVVQTDRG 78 (221)
T ss_pred chhhhhcCcccHHHHHHHHHHHHHHhhcC---CCCC--eEEEEecCCeeecCccCCHh------hcccCCCCCEEEecCC
Confidence 57889999999999999999999999764 4577 99999999999999887222 2234789999999999
Q ss_pred CceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcEEEE
Q psy6495 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHH 163 (235)
Q Consensus 84 Gg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt~h 163 (235)
|++|||||||+|+|||+||++++.++++|+++||+++|++|++ |||+++++++++||||++++||||||+++++|+|||
T Consensus 79 GqvTyHGPGQ~V~Y~ildLkr~~~~vr~~V~~LEqavI~tLa~-~~i~~~~~~~~~GVwV~~~~KIAaiGirirr~vs~H 157 (221)
T COG0321 79 GQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQAVINTLAE-YGIEAERRPDRPGVWVEEERKIAAIGIRIRRGVTFH 157 (221)
T ss_pred ceeEEeCCCcEEEEEEEecccccccHHHHHHHHHHHHHHHHHH-cCCcccccCCCCeEEecCCceEEEEEEEEeccccee
Confidence 9999999999999999999998889999999999999999999 999999999999999994499999999999999999
Q ss_pred eeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcccc
Q psy6495 164 GLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECEC 221 (235)
Q Consensus 164 G~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~ 221 (235)
|+||||++||++|+.|+|||+.+..||||.++ +.++++++|...++++|++.|+...
T Consensus 158 GlALNv~~DL~~F~~I~PCG~~~~~~tsl~d~-~~~v~~~~V~~~l~~~~~~~l~~~~ 214 (221)
T COG0321 158 GLALNVNMDLSPFNRIVPCGYAGMEVTSLSDL-GPPVTVDEVAKALVAAFAKLLGPKL 214 (221)
T ss_pred eeEEeccCCchhccceeccccCCCceeEHHHh-CCCCcHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999995 6679999999999999999999865
No 9
>PRK14346 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=6.2e-64 Score=429.08 Aligned_cols=201 Identities=30% Similarity=0.490 Sum_probs=185.0
Q ss_pred eeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEeccC
Q psy6495 4 QVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (235)
Q Consensus 4 ~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (235)
++.++++|+++|.++|++|+++++.+.. ..+| +|||||||||||+|+++..+ +.+...++||++++||
T Consensus 2 ~~~~~~lG~v~Y~~a~~~q~~~~~~~~~----~~~d--~llllEHppVyT~G~~~~~~------~ll~~~~i~v~~tdRG 69 (230)
T PRK14346 2 AMDRRMLGRVDYLATVQAMQAFTAERTP----ETPD--ELWICEHPPVYTQGLAGKAD------HVLNPGDIPVVATNRG 69 (230)
T ss_pred eEEEEeCCCcCHHHHHHHHHHHHHHhhC----CCCC--EEEEEcCCCCeeCCCCCChh------hccCCCCCcEEEeCCC
Confidence 4678999999999999999999988765 3467 99999999999999998322 2345668999999999
Q ss_pred CceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCC------------------
Q psy6495 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDD------------------ 145 (235)
Q Consensus 84 Gg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~------------------ 145 (235)
|++|||||||||+|||+||++++.++++|++.||+++|++|++ |||++.+.++.+||||+.
T Consensus 70 G~iTyHGPGQlV~YpildL~~~~~~vr~yv~~lE~~vI~~l~~-~gi~~~~~~~~~GVWv~~~~~~~~~~~~~~~~~~~~ 148 (230)
T PRK14346 70 GQVTYHGPGQVVAYPLIDLRRAGYFVKEYVYRIEEAVIRTLAH-FGVTGHRVAGAPGIYVRLDDPFSHAALPQRPQKRGG 148 (230)
T ss_pred cceeEECCCeEEEEEEEeccccCCCHHHHHHHHHHHHHHHHHH-hCCceEEcCCCCEEEEcCCCcccccccccccccccc
Confidence 9999999999999999999998999999999999999999999 999999998999999971
Q ss_pred ---------CCceeeeceeeeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHh
Q psy6495 146 ---------EYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESV 216 (235)
Q Consensus 146 ---------~rKIa~iG~~~~~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~ 216 (235)
.+||||+|+++++|+||||+||||++||++|+.|+||||+++.||||++ +|.+++++++++.++++|++.
T Consensus 149 ~~~~~~~~~~~KIaAiGv~v~r~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSL~~-lg~~~~~~~v~~~l~~~f~~~ 227 (230)
T PRK14346 149 GAPQPPFRGLGKIAALGIKVSRHCTYHGVALNVAMDLEPFSRINPCGYAGLQTVDLST-IGVQTTWDEAASVLGQQLARY 227 (230)
T ss_pred ccccccccccceEEEEeeEEecceeecceeEEcCCChhhhCcEECCCCCCCceeeHHH-hCCCCCHHHHHHHHHHHHHHH
Confidence 1699999999999999999999999999999999999999999999975 799999999999999999999
Q ss_pred hc
Q psy6495 217 FE 218 (235)
Q Consensus 217 f~ 218 (235)
|+
T Consensus 228 ~~ 229 (230)
T PRK14346 228 LA 229 (230)
T ss_pred hC
Confidence 84
No 10
>PRK14349 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2.5e-63 Score=422.86 Aligned_cols=200 Identities=26% Similarity=0.413 Sum_probs=184.0
Q ss_pred EEcCC-CCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEeccCCce
Q psy6495 8 VRLGV-VSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLI 86 (235)
Q Consensus 8 ~~lg~-~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~rGGg~ 86 (235)
..++. ++|+++|++|+++++++..+ .+| +|||||||||||+|+++..+ +.+...+++|++++|||++
T Consensus 3 ~~~~~~~~Y~~a~~~q~~~~~~~~~~----~~d--~llllEH~pVyT~G~~~~~~------~ll~~~~i~vv~t~RGG~i 70 (220)
T PRK14349 3 KWLARPADYASVWDAMKAFTAARGPG----TAD--EIWLCEHAPVYTLGQAGRPE------HLLNPGLIPVVHCDRGGQV 70 (220)
T ss_pred eeccCccCHHHHHHHHHHHHHHHhCC----CCC--EEEEEcCCCCeeCCCCCChh------hccCCCCCcEEEecCCcce
Confidence 45666 99999999999999998753 457 99999999999999998332 2245668999999999999
Q ss_pred EEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCe-eEeeCCCceEEeCC----CCceeeeceeeeCcEE
Q psy6495 87 TFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLN-AGLIPKYTGVFLDD----EYKVCAIGVHSSLYIT 161 (235)
Q Consensus 87 tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~-a~~~~~~~gv~v~~----~rKIa~iG~~~~~~vt 161 (235)
|||||||||+|||+||++.+.++++|++.||+++|++|++ |||+ +.++++.+||||++ ++||||+|+++++|+|
T Consensus 71 TyHGPGQLV~YpIldL~~~~~~vr~yv~~LE~~~I~~l~~-~gi~~a~~~~~~~GVWv~~~~~~~~KIaaiGv~v~r~vT 149 (220)
T PRK14349 71 TYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQATLATLRE-LGLEQACRKPGAPGIYVPQPGGELAKIAALGVKVRNGYA 149 (220)
T ss_pred EEeCCCcEEEEEEEEcccCCCCHHHHHHHHHHHHHHHHHH-hCCcceeecCCCCcEEeCCCCCCCceEEEEeeEEeccee
Confidence 9999999999999999998999999999999999999999 9999 99998999999983 2899999999999999
Q ss_pred EEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcccc
Q psy6495 162 HHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECEC 221 (235)
Q Consensus 162 ~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~ 221 (235)
|||+||||++||++|+.|+||||+|+.||||++ +|.+++++++++.++++|++.|+.+.
T Consensus 150 ~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSl~~-~g~~~~~~~v~~~l~~~f~~~f~~~~ 208 (220)
T PRK14349 150 YHGLALNIDMDLSPFLGINPCGYEGLRTVDLAA-CGVRTSVERAGELLAAQLARAHGQAV 208 (220)
T ss_pred ecceeEEecCCchhhCcEEcCCCCCCcEeeHHH-hCCCCCHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999976 79999999999999999999998776
No 11
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=100.00 E-value=6.6e-59 Score=387.98 Aligned_cols=175 Identities=35% Similarity=0.630 Sum_probs=158.4
Q ss_pred CCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEeccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHH
Q psy6495 36 PSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQS 115 (235)
Q Consensus 36 ~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~ 115 (235)
..+| +||+||||||||+|+++..++.. ... ...+++|++++|||++|||||||||+|||+||++++.++++|++.
T Consensus 10 ~~~d--~llllEH~pVyT~G~~~~~~~l~-~~~--~~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~ 84 (184)
T TIGR00214 10 QTLD--EIMLVEHYPVYTQGQAGKTEHLL-FDP--DIPPAEVVQSERGGQVTYHGPGQQVMYVILDLKRFQLDVRWLVTQ 84 (184)
T ss_pred CCCC--EEEEECCCCCeeCCCCCChhhcc-CCc--CCCcceEEEeCCCCeeEEECCCeEEEEEEEEchhcCCCHHHHHHH
Confidence 4567 99999999999999998333221 111 112445999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeeccc
Q psy6495 116 IEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKH 195 (235)
Q Consensus 116 le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~ 195 (235)
||+++|++|++ |||++.++++.+|||+++ +||||||+++++|+|||||||||++||++|+.|+||||+++.||||++
T Consensus 85 lE~~~I~~l~~-~gi~a~~~~~~~GVWv~~-~KIasIGv~v~r~vt~HG~ALNv~~dL~~F~~I~PCGl~~~~vTSl~~- 161 (184)
T TIGR00214 85 LEQTVIITLAE-LGIEGEPIADATGVWVEG-KKVASLGIRVRRGCTFHGLALNINMDLSPFSHINPCGYAGREMGSLNQ- 161 (184)
T ss_pred HHHHHHHHHHH-cCCceEEcCCCCeEEecC-CEEEEEEEEEeccEeecceEEEcCCCchHhccEEcCCCCCCcEeeHHH-
Confidence 99999999999 999999988999999999 999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhc
Q psy6495 196 LSKDITVDTVVPLFKKHFESVFE 218 (235)
Q Consensus 196 l~~~~~~~~v~~~l~~~f~~~f~ 218 (235)
++.+++++++++.++++|++.|+
T Consensus 162 ~~~~~~~~~v~~~~~~~f~~~f~ 184 (184)
T TIGR00214 162 FLPGATVENVAPLLIKAFAELLG 184 (184)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhC
Confidence 56899999999999999999985
No 12
>KOG0325|consensus
Probab=100.00 E-value=1e-48 Score=328.22 Aligned_cols=215 Identities=45% Similarity=0.724 Sum_probs=191.2
Q ss_pred eeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEeccC
Q psy6495 4 QVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (235)
Q Consensus 4 ~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (235)
.+.+...|+..|....++|+++++....-+.......|++++.||+||||+|.+. ..++..+...+.+.|.+++++.||
T Consensus 6 ~~~~~r~g~~~y~~~~~lq~rlvr~~~~~~~s~~~~~p~il~~eh~PvYT~G~rt-~~~~~~~e~~l~~~ga~~~~t~RG 84 (226)
T KOG0325|consen 6 GVETVRAGLVHYHRTLALQNRLVRSVKILKKSGTHPIPRILTNEHLPVYTYGCRT-LDFTLYDESRLYKLGAEFHKTERG 84 (226)
T ss_pred eEEEEEcccchHHhhhHHHHHHHHHhhhcccccCCCCCEEeecccCCeeeecccc-CCcccchhhhhhhcCceEEEeecC
Confidence 5788899999999999999999999844321111222499999999999999664 445555677889999999999999
Q ss_pred CceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcEEEE
Q psy6495 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHH 163 (235)
Q Consensus 84 Gg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt~h 163 (235)
|.+|||||||+++|||++|++++.+.++|+..|| +++.. |||++....+.+||||.+ .|||++|++++++||||
T Consensus 85 G~iTfHGPgQl~~ypIidL~~f~~~~r~~Vs~le----~~c~~-~~i~~~~~t~~tgvwV~d-~k~aaiGi~vsr~IT~H 158 (226)
T KOG0325|consen 85 GLITFHGPGQLVAYPIIDLRHFGFSARCYVSTLE----AACPD-FGIKGTASTKDTGVWVGD-AKIAAIGIRVSREITYH 158 (226)
T ss_pred ceEEEeCCCceEEEEEEEeeccccchhhHHHHHH----hhccc-ccccccccccccceeecC-CeeEEEEEEecCcEeec
Confidence 9999999999999999999999999999999998 67788 999976655699999999 89999999999999999
Q ss_pred eeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcccccccC
Q psy6495 164 GLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVE 225 (235)
Q Consensus 164 G~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~~~ 225 (235)
|+|||+++||++|++|+|||+.++.+||+.+|+++.++.++++.....+|++.|.+...+.+
T Consensus 159 GlaLN~~tDL~~fnhiv~CGi~~~~vtSi~~e~~~~~~~~~~~~~~l~~l~k~f~~~~~~~~ 220 (226)
T KOG0325|consen 159 GLALNVNTDLTYFNHIVPCGIYGRGVTSISKEIRRLVTVEESVAIRLVSLTKVFSCMLQESN 220 (226)
T ss_pred ceEEEeccCcchhhccccceeeccccceehhhhccccchhHhHHHHHHHHHHhhhhheeccc
Confidence 99999999999999999999999999999998998999999999999999999998876544
No 13
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=99.98 E-value=6e-31 Score=239.19 Aligned_cols=202 Identities=15% Similarity=0.181 Sum_probs=167.3
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEecc
Q psy6495 3 KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (235)
Q Consensus 3 ~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (235)
..++++..+..+-...+|+.|.+++....+ ++ +|++|+++|++++||+| +++.|++.++|++.||+|+||.+
T Consensus 2 ~~~~~i~s~~~dp~~NlAlEe~Ll~~~~~~-----~~--~l~~w~n~p~VvIGr~Q-n~~~Evn~~~~~~~gI~vvRR~S 73 (338)
T PRK03822 2 STLRLLISDSYDPWFNLAVEECIFRQMPAT-----QR--VLFLWRNADTVVIGRAQ-NPWKECNTRRMEEDNVRLARRSS 73 (338)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHhcCCCC-----CC--EEEEEcCCCeEEECCCC-CHHHHhCHHHHHHcCCcEEEECC
Confidence 457888888888888899999999887542 34 99999999999999999 88889999999999999999999
Q ss_pred CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeC----CCCceeeeceeeeC
Q psy6495 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLD----DEYKVCAIGVHSSL 158 (235)
Q Consensus 83 GGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~----~~rKIa~iG~~~~~ 158 (235)
|||++|||+|++.+++|.+... .+... ..+.++++|+. +||+|++++ +|||+++ + +||+|.+++..+
T Consensus 74 GGGAVyhD~Gnl~~s~i~~~~~--~~~~~----~~~~ii~aL~~-lGi~a~~~~-rnDi~v~~~~g~-kKisGsAq~~~~ 144 (338)
T PRK03822 74 GGGAVFHDLGNTCFTFMAGKPE--YDKTI----STSIVLNALNS-LGVSAEASG-RNDLVVKTAEGD-RKVSGSAYRETK 144 (338)
T ss_pred CCceEEEcCCCcEEEEEeCCCc--cCHHH----HHHHHHHHHHH-cCCceeECC-CccEEEecCCCC-cEEEEEeeeeeC
Confidence 9999999999999988886422 23222 35799999999 999999985 9999995 5 999999999999
Q ss_pred cEEEEeeeeecCCCcccccc-cc--C-----CCCCC--CCeeeeccccCCCCCHHHHHHHHHHHHHHhhccccc
Q psy6495 159 YITHHGLAINCDTDLTWFNH-IT--P-----CGIKD--KQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECS 222 (235)
Q Consensus 159 ~vt~hG~alNv~~dl~~f~~-i~--p-----cGl~~--~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~ 222 (235)
+..+|+.+|.++.|++.+.. +. + .|+++ .+||+|.++++ .+++++++++++++|.+.|+....
T Consensus 145 ~~~l~HGTlL~~~d~~~l~~~L~~~~~k~~skgv~Sv~srVtnl~~~~~-~~~~e~~~~~l~~~f~~~~~~~~~ 217 (338)
T PRK03822 145 DRGFHHGTLLLNADLSRLANYLNPDKKKLQAKGITSVRSRVTNLTELLP-GITHEQVCEAITEAFFAHYGERVE 217 (338)
T ss_pred CeEEEEEEEEecCCHHHHHHHhCCChhhhhhccccchHhhhccHHHhCC-CCCHHHHHHHHHHHHHHHhCCCCC
Confidence 88888889999999875422 22 2 34433 47888888664 599999999999999999986443
No 14
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=99.97 E-value=4e-30 Score=232.80 Aligned_cols=201 Identities=15% Similarity=0.197 Sum_probs=166.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEeccCCc
Q psy6495 6 QLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGL 85 (235)
Q Consensus 6 ~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~rGGg 85 (235)
+++..+..+-...+|+++.+++....+ ..++ +|+||+++|++++|++| +++.|++.++|++.||+|+||.+|||
T Consensus 2 ~~i~~~~~d~~~nlA~ee~Ll~~~~~~---~~~~--~l~~w~~~p~vviG~~Q-~~~~ev~~~~~~~~gi~vvRR~sGGG 75 (324)
T TIGR00545 2 RILTSPSNDPYFNLALEEYLFKEFPKT---QRGK--VLLFWQNANTIVIGRNQ-NTWAEVNLKELEEDNVNLFRRFSGGG 75 (324)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHccccC---CCCc--EEEEEcCCCeEEECCCC-CHHHHhCHHHHHHcCCeEEEECCCCc
Confidence 356666777777899999999987754 3445 99999999999999999 77788999999999999999999999
Q ss_pred eEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcEEEEee
Q psy6495 86 ITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGL 165 (235)
Q Consensus 86 ~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt~hG~ 165 (235)
++|||+|++++.+|.+.+. ..+..| +.+.+.++++|+. +||++++.+ ++|+.++| |||+|.+++..++..+|+.
T Consensus 76 aVyhD~g~l~~s~i~~~~~--~~~~~~-~~~~~~i~~aL~~-lGi~a~~~~-rnDl~v~g-kKisGsAq~~~~~~~l~HG 149 (324)
T TIGR00545 76 AVFHDLGNICFSFITPKDG--KEFENA-KIFTRNVIKALNS-LGVEAELSG-RNDLVVDG-RKISGSAYYITKDRGFHHG 149 (324)
T ss_pred eEEEcCCceEEEEEEcCCc--cchhhH-HHHHHHHHHHHHH-hCCCeEECC-CceEEECC-EEEEEEeeeeeCCEEEEEE
Confidence 9999999999999987642 234455 7888999999999 999999995 99999999 9999999999988888777
Q ss_pred eeecCCCcccccc-ccC-------CCCCC--CCeeeeccccCCCCCHHHHHHHHHHHHHHhhccc
Q psy6495 166 AINCDTDLTWFNH-ITP-------CGIKD--KQVTSLSKHLSKDITVDTVVPLFKKHFESVFECE 220 (235)
Q Consensus 166 alNv~~dl~~f~~-i~p-------cGl~~--~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~ 220 (235)
+|.++.|++.... +.| .|+++ .+||+|.++++. ++++++.++++++|.+ ++..
T Consensus 150 tlL~~~d~~~l~~~L~~~~~k~~skgv~sv~~rv~nl~~~l~~-~~~e~~~~~l~~~f~~-~~~~ 212 (324)
T TIGR00545 150 TLLFDADLSKLAKYLNVDKTKIESKGITSVRSRVVNVKEYLPN-ITTEQFLEEMTQAFFT-YTER 212 (324)
T ss_pred EEEccCCHHHHHHhcCCChhhhHhhcccchhhhcccHHHhCCC-CCHHHHHHHHHHHHHh-hCCC
Confidence 8999999874422 222 23333 478888887654 8999999999999998 5433
No 15
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=245.67 Aligned_cols=204 Identities=13% Similarity=0.153 Sum_probs=170.1
Q ss_pred CCceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEe
Q psy6495 1 MTKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKT 80 (235)
Q Consensus 1 m~~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~ 80 (235)
|+..++++..+..+-.-.+|++|.+++.... ..+ +|++|+++|++++||+| +++.|++.++|++.||+|+||
T Consensus 224 ~m~~m~~i~s~s~dp~~NLAlEE~Ll~~~~~-----~~~--~l~lW~n~ptVvIGrnQ-N~~~EVNl~~~~~~gI~vVRR 295 (562)
T PRK14061 224 VMSTLRLLISDSYDPWFNLAVEECIFRQMPA-----TQR--VLFLWRNADTVVIGRAQ-NPWKECNTRRMEEDNVRLARR 295 (562)
T ss_pred hcccEEEEEcCCCCHHHHHHHHHHHHhcCCC-----CCC--EEEEEcCCCEEEECCCC-CchhhhCHHHHHhcCCcEEEE
Confidence 5677899988888888889999999887532 234 99999999999999999 888899999999999999999
Q ss_pred ccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEe----CCCCceeeeceee
Q psy6495 81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFL----DDEYKVCAIGVHS 156 (235)
Q Consensus 81 ~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v----~~~rKIa~iG~~~ 156 (235)
.+|||++|||+|++.+.+|.+... .+...+ .+.++++|+. +||+|++.+ +||+.+ +| |||+|.+...
T Consensus 296 ~SGGGAVYHD~GNlnfSfi~~~~~--~~~~~~----~~~Ii~aL~~-LGI~ae~sg-RNDI~v~~~~~G-kKISGsAq~~ 366 (562)
T PRK14061 296 SSGGGAVFHDLGNTCFTFMAGKPE--YDKTIS----TSIVLNALNA-LGVSAEASG-RNDLVVKTAEGD-RKVSGSAYRE 366 (562)
T ss_pred CCCCcEEEEcCCceEEEEEeCCcc--cchHHH----HHHHHHHHHH-cCCCeEECC-CccEEEeeCCCC-cEEEEEeEEE
Confidence 999999999999999999886322 233333 4899999999 999999985 999999 57 9999999999
Q ss_pred eCcEEEEeeeeecCCCccccc---cccCCCCCC-------CCeeeeccccCCCCCHHHHHHHHHHHHHHhhccccc
Q psy6495 157 SLYITHHGLAINCDTDLTWFN---HITPCGIKD-------KQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECS 222 (235)
Q Consensus 157 ~~~vt~hG~alNv~~dl~~f~---~i~pcGl~~-------~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~ 222 (235)
.++..+|+.+|.++.|++... ...+.++.+ .+||+|+++++ .+++++++++++++|.+.|+.+..
T Consensus 367 ~~~~~lhHGTLL~d~dl~~L~~~L~~~~~Kl~sKgvkSVrsRVtNL~e~l~-~it~e~f~~~L~~~f~~~~g~~~~ 441 (562)
T PRK14061 367 TKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLP-GIPHEQVCEAITEAFFAHYGERVE 441 (562)
T ss_pred eCCeEEEEEEEEecCCHHHHHHHhCCCchhhhhhhhhhHHhhceeHHHhCC-CCCHHHHHHHHHHHHHHHcCCCCc
Confidence 999999888999999976432 222334433 47888888765 589999999999999999986543
No 16
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=99.96 E-value=1.2e-27 Score=209.45 Aligned_cols=210 Identities=19% Similarity=0.175 Sum_probs=169.6
Q ss_pred eEEEEcCCCC--HHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEecc
Q psy6495 5 VQLVRLGVVS--YSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (235)
Q Consensus 5 ~~~~~lg~~~--y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (235)
+++++.+..+ -...+|+++.+++...++ + +.++++.++|++++|++| +...|++.+++++.||+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~n~A~de~ll~~~~~~------~-~i~~~~~~~~~v~lG~~q-~~~~Ev~~~~~~~~~i~vvRR~s 73 (248)
T COG0095 2 WRIIDLGIRDFDPAFNLALDEALLRSLSEG------G-TLRLYWWNPPTVVLGRFQ-NTLPEVNLEYVKEDGIPVVRRPS 73 (248)
T ss_pred eeEEeccccCCCHHHHHHHHHHHHHhCCCC------C-eEEEEEECCCeEEECCcc-chHhHhhHHHHHHcCCcEEEEcC
Confidence 5677777754 666799999999988643 2 155555569999999999 66678999999999999999999
Q ss_pred CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCe-eEeeCCCceEEeCCCCceeeeceeeeCcEE
Q psy6495 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLN-AGLIPKYTGVFLDDEYKVCAIGVHSSLYIT 161 (235)
Q Consensus 83 GGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~-a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt 161 (235)
|||++||++|++++..|++-+.....+...+..+.+.++++|.. +|++ +... ++|||-|+| |||||++++..++..
T Consensus 74 GGGaV~hd~g~l~~S~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-lgv~~~~~~-~~nDl~v~g-kKisG~Aq~~~~~~~ 150 (248)
T COG0095 74 GGGAVFHDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDALRA-LGVEGAECP-GRNDLVVDG-KKISGSAQRRTKGRI 150 (248)
T ss_pred CCceEEecCCcEEEEEEECCCCccccHHHHHHHHHHHHHHHHHH-cCCCeeccC-CCcceeEcC-cEEeeHHHHhhCCcE
Confidence 99999999999999999988765567888888899999999999 9999 6666 599999999 999999999888877
Q ss_pred EEeeeeecCCCccccccc---cCCCCCC-------CCeeeeccccCCCCCHHHHHHHHHHHHHHhhcccccccCcH
Q psy6495 162 HHGLAINCDTDLTWFNHI---TPCGIKD-------KQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELD 227 (235)
Q Consensus 162 ~hG~alNv~~dl~~f~~i---~pcGl~~-------~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~~~~~ 227 (235)
+|+.+|.++.|++.+... .+.++++ .+|++|.++ .+++++++.+++.+.|.+.++.+..+..++
T Consensus 151 l~hgtll~~~d~~~l~~~l~~~~~k~~~k~~~s~~~rv~~l~~~--~~~~~~e~~~~l~~~f~~~~~~~~~~~~lt 224 (248)
T COG0095 151 LHHGTLLLDIDLELLARVLRVPKEKIKSKGIKSVRERVANLEEL--LKISVEEFLEALLEAFFKVLGVELEEYELT 224 (248)
T ss_pred EEEEEEEEeCCHHHHHHHhCCChhhhhhcccccHHHhCcchhhc--cCCCHHHHHHHHHHHHHHhhCCCccccCCC
Confidence 777688888887644222 2223333 357777775 789999999999999999998544444443
No 17
>KOG3159|consensus
Probab=99.87 E-value=3.4e-21 Score=169.31 Aligned_cols=202 Identities=17% Similarity=0.240 Sum_probs=154.5
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEecc
Q psy6495 3 KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (235)
Q Consensus 3 ~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (235)
.+..+.-+..-+|.. +|+..-+... ..+ .... +|+||.+.|++.||||| +++.|++...|++.+|+++||.+
T Consensus 9 ~~~V~~s~S~~~y~N-LAlE~~l~~~-~~~---~~~~--~Ll~w~N~p~vVIGRhQ-Npw~E~nv~~~~e~~I~liRR~S 80 (336)
T KOG3159|consen 9 GRFVLQSLSSDPYYN-LALENYLYRH-KNG---PDKH--ILLLWINDPCVVIGRHQ-NPWQEANVALLRENNIPLIRRFS 80 (336)
T ss_pred cceEEEEecCchhhh-hHHHHHHHhh-ccC---CCCe--EEEEEeCCceEEEccCC-CcceeccHHHHHhcCCeEEEEec
Confidence 344556666667765 7777766633 222 2334 99999999999999999 99999999999999999999999
Q ss_pred CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHh--hhcCCeeEeeCCCceEEeC-CCCceeeeceeeeCc
Q psy6495 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCK--QEFSLNAGLIPKYTGVFLD-DEYKVCAIGVHSSLY 159 (235)
Q Consensus 83 GGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~--~~~Gi~a~~~~~~~gv~v~-~~rKIa~iG~~~~~~ 159 (235)
|||++|||-|.|+..++.+-+.+... +.+ ..++++|. + +++++.... +-|+..+ |+|||+|.+.++.++
T Consensus 81 GGGTVyHDlGNLN~S~lt~re~~~r~--~nl----k~iv~ALn~~e-~~v~v~~nq-R~Di~l~~g~rKiSGtA~kI~r~ 152 (336)
T KOG3159|consen 81 GGGTVYHDLGNLNYSLLTNREKFDRK--ENL----KIIVRALNGDE-PFVKVNLNQ-RDDIVLDFGQRKISGTAYKIARN 152 (336)
T ss_pred CCceEEEecCceeEEEEccHHHcCcc--cch----HHHHHHhccCC-ceEeecccc-cccceecccCceeccchhhhcCC
Confidence 99999999999999988877654211 112 35677887 6 888888875 7787776 339999999999999
Q ss_pred EEEEeeeeecCCCcccccccc---CCCCCCCCeeeecc-----c--cCCCCCHHHHHHHHHHHHHHhhccc
Q psy6495 160 ITHHGLAINCDTDLTWFNHIT---PCGIKDKQVTSLSK-----H--LSKDITVDTVVPLFKKHFESVFECE 220 (235)
Q Consensus 160 vt~hG~alNv~~dl~~f~~i~---pcGl~~~~vtSl~~-----~--l~~~~~~~~v~~~l~~~f~~~f~~~ 220 (235)
..||+.++.++.|++.++... +.++..+...|+.+ . -..-++.+..+-++.+.+.+.|..+
T Consensus 153 raYHH~T~L~~aDl~~ls~lL~sp~~~~~s~at~sv~sp~vk~lie~~~~v~~~q~~~av~~~y~~t~~~d 223 (336)
T KOG3159|consen 153 RAYHHCTMLLNADLENLSELLKSPRVNIRSKATSSVRSPRVKNLIEKDDFVNVEQSAVAVQEEYKKTFKED 223 (336)
T ss_pred ceeeeEEeEeccchHHHHhhccCCCCCccccccccccchhhhhhhhhcCcccHhHHHHHHHHHHHHHhccc
Confidence 999999999999998776552 34676655555544 1 1234677777778888888888765
No 18
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine []. Lipoate-protein ligase A (LPLA) (octanoyltransferase) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes [].; GO: 0003824 catalytic activity, 0006464 protein modification process; PDB: 2ARU_A 2C8M_B 2C7I_A 3R07_A 2ARS_A 2ART_A 3FJP_A 3EFR_B 2EAY_B 3EFS_B ....
Probab=99.72 E-value=7e-17 Score=125.73 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=93.4
Q ss_pred EccCcccccchhhHhhhccCCCcEEEeccCCceEEEcCCCeEEEEe-eecCCC---CCCHHHHHHHHHHHHHHHHh----
Q psy6495 54 IGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPI-INLKHF---TPSIKWFVQSIEQTVIQLCK---- 125 (235)
Q Consensus 54 iGr~~~~~~~~~~~~~l~~~gi~v~r~~rGGg~tyHgpGQLv~y~i-l~l~~~---~~~~~~~~~~le~~vi~~L~---- 125 (235)
+|++|+....+.+.+.+++.++++++|.|||+.+||+|++.+.|.+ ++.+.. ...+..|+..+...+++.|.
T Consensus 1 ~g~~~~st~~~~~~~~~~~~~v~v~~rqtgG~~~w~~p~g~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (125)
T PF03099_consen 1 IGYFQDSTKEELNQEELKEGGVPVARRQTGGRRVWHSPPGNLYFSLILPPDDPNFPPSDIPSYILLAALAVLEALGEFGP 80 (125)
T ss_dssp EETTBSHHHHHHHHHHHHCTTEEEEEESSSSBEEEEBTTTEEEEEEEEETTTTTHHGGGHHHHHHHHHHHHHHHHHHTTH
T ss_pred CcCeECHHHHHHHHhcCccCCEEEEEEeeCCcceeeeCCcEEEEEEEEccccccccchhhhHHHHHHHHHHHHHhhhhcc
Confidence 5788844325678899999999999999999999999655555554 444432 24677888888888888883
Q ss_pred hhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcEEEEeeeeecCCC
Q psy6495 126 QEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTD 172 (235)
Q Consensus 126 ~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt~hG~alNv~~d 172 (235)
...|+++..+. +|||++++ |||||++++..++..+|+++++++.|
T Consensus 81 ~~~~~~~~~kw-~nDi~~~~-kKi~Gil~~~~~~~~~~~~~igig~N 125 (125)
T PF03099_consen 81 GEPGIDCFIKW-PNDIYVNG-KKIAGILQERRRGGILHHGSIGIGIN 125 (125)
T ss_dssp TTTTSSEEEET-TTEEEETT-EEEEEEEEEEETTEEEEEEEEESSEE
T ss_pred ccCCCceEEeC-CCCccCCC-cEEEEEeEeeeCCcEEEEEEEEEecC
Confidence 22578899995 99999999 99999999999999999999999864
No 19
>PRK08330 biotin--protein ligase; Provisional
Probab=99.63 E-value=3.7e-15 Score=129.48 Aligned_cols=128 Identities=15% Similarity=0.204 Sum_probs=108.8
Q ss_pred ccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcE
Q psy6495 81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYI 160 (235)
Q Consensus 81 ~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~v 160 (235)
-|.|..++..||+|.++++++.......+..+.-...-+++++|++ +|+++..+. +||||+++ +|||||.+....+.
T Consensus 41 GR~gr~W~Sp~G~l~~S~~l~~~~~~~~~~~l~~~~~~av~~~l~~-~g~~~~iKW-PNDI~~~~-kKi~GILiE~~~~~ 117 (236)
T PRK08330 41 GRKGRAWASPEGGLWMSVILKPKVSPEHLPKLVFLGALAVVDTLRE-FGIEGKIKW-PNDVLVNY-KKIAGVLVEGKGDF 117 (236)
T ss_pred CCCCCeeeCCCCCeEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHH-cCCCccccC-CCeEEECC-eEEEEEeEEEeCCE
Confidence 4678888899999999999876543333444555566789999999 999999997 99999999 99999999988888
Q ss_pred EEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 161 THHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 161 t~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
.+||+.|||+++ .||++.+ .+|||.++++..++.+++...++++|.+.|..
T Consensus 118 ~viGiGiNv~~~-------~p~~l~~-~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~~ 168 (236)
T PRK08330 118 VVLGIGLNVNNE-------IPDELRE-TATSMKEVLGREVPLIEVFKRLVENLDRWYKL 168 (236)
T ss_pred EEEEEEEecCCC-------CCccccc-ccccHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999875 3999876 69999988888999999999999999987764
No 20
>PRK05935 biotin--protein ligase; Provisional
Probab=99.03 E-value=7.6e-09 Score=87.40 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=98.7
Q ss_pred eccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCC-eeEeeCCCceEEeCCCCceeeeceeee-
Q psy6495 80 TNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSL-NAGLIPKYTGVFLDDEYKVCAIGVHSS- 157 (235)
Q Consensus 80 ~~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi-~a~~~~~~~gv~v~~~rKIa~iG~~~~- 157 (235)
|-|.|..++..||+|.+..++..+.....+.......--+++++++. +++ ++..+. +||||+++ +|||||=+...
T Consensus 42 RGR~GR~W~Sp~G~L~~Si~l~~~~~~~~~~~~~~l~~~av~~~l~~-~~~~~~~iKW-PNDI~~~~-kKi~GILiE~~~ 118 (190)
T PRK05935 42 KGKFGKSWHSSDQDLLASFCFFITVLNIDVSLLFRLGTEAVMRLGED-LGITEAVIKW-PNDVLVHG-EKLCGVLCETIP 118 (190)
T ss_pred CCCCCCeeeCCCCCeEEEEEEccCCCCcCHHHHHHHHHHHHHHHHHH-hCCccccccC-CCeEEECC-cEEEEEEEeccc
Confidence 34779999999999888888865543334443332222478889998 887 488998 99999999 99999877632
Q ss_pred ---CcEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 158 ---LYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 158 ---~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
.....-|+.+|++.+.+.+. ++ ....|||..+.+..++.+++...++++|.+.+-.
T Consensus 119 ~~~~~~vVIGIGINv~~~~~~~~-----~~-~~~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~~ 177 (190)
T PRK05935 119 VKGGLGVILGIGVNGNTTKDELL-----GI-DQPATSLQELLGHPIDLEEQRERLIKHIKHVLIQ 177 (190)
T ss_pred cCCCcEEEEEEeEecCCCchhcc-----cc-CCCcccHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 23567899999987644331 22 2458999988889999999999999999988755
No 21
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=98.88 E-value=2.6e-08 Score=86.60 Aligned_cols=130 Identities=17% Similarity=0.134 Sum_probs=96.3
Q ss_pred eccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeC-
Q psy6495 80 TNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSL- 158 (235)
Q Consensus 80 ~~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~- 158 (235)
|-|.|..++-.||.|.+..++........+..+--..--++.++|.+ ++++...+. +||||+++ +|||||=+....
T Consensus 38 RGR~gr~W~Sp~g~l~~S~~l~~~~~~~~~~~ls~~~~lAv~~al~~-~~~~~~iKW-PNDI~~~~-kKi~GIL~E~~~~ 114 (237)
T TIGR00121 38 RGRRGRKWLSPEGGLYFSLILRPDLPKSPAPGLTLVAGIAIAEVLKE-LGDQVQVKW-PNDILLKD-KKLGGILTELTGK 114 (237)
T ss_pred CCCCCCcccCCCCceEEEEEECCCCChhHhhhhHHHHHHHHHHHHHH-hCCCCCCcC-CceEEECC-eEEEEEEEEcccC
Confidence 34778889999998888888765321111111112223478899999 898899999 99999999 999999876432
Q ss_pred ----cEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 159 ----YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 159 ----~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
....-|+.+||+.+ .| |..+. ...|||..+++..++.+++...++++|.+.+..
T Consensus 115 ~~~~~~vviGIGiNv~~~--~~----~~~~~-~~a~sl~~~~~~~~~~~~ll~~l~~~l~~~~~~ 172 (237)
T TIGR00121 115 ENRADYVVIGIGINVQNR--KP----AESLR-EQAISLSEEAGIDLDRGELIEGFLRNFEENLEW 172 (237)
T ss_pred CCCcCEEEEEEEEccCCC--CC----chhhc-ccceehHHhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34678999999764 11 33443 368899888888999999999999999987764
No 22
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=98.83 E-value=3.1e-08 Score=86.49 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=102.6
Q ss_pred eccCCceEEEcCC-CeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeC
Q psy6495 80 TNRGGLITFHGPG-QLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSL 158 (235)
Q Consensus 80 ~~rGGg~tyHgpG-QLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~ 158 (235)
|-|.|..++..|| +|.+..++..+.....+..+.-..--++.++|.+ +++++..+. +|||++++ ||+|||=+....
T Consensus 34 RGR~GR~W~Sp~G~~l~~S~~l~~~~~~~~~~~lsl~~g~av~~al~~-~~~~~~iKW-PNDv~~~~-kKl~GIL~E~~~ 110 (238)
T COG0340 34 RGRRGRKWSSPKGGGLYMSLLLRPDLPPAELPSLSLVAGLAVAEALRK-FGIDVRIKW-PNDVLLNG-KKLAGILVEAVG 110 (238)
T ss_pred cCCCCCcccCCCCCCEEEEEEEcCCcChhhcchhHHHHHHHHHHHHHH-hCcccCccC-CcceeECC-cceEEEEEeeee
Confidence 4578899999998 8877777766543222233333334489999999 999999999 99999999 999999887543
Q ss_pred -----cEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhccccc
Q psy6495 159 -----YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECS 222 (235)
Q Consensus 159 -----~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~ 222 (235)
....-|+.+|++.....|. -+ +...|||.++. ..++.+++...+++.|.+.+..-..
T Consensus 111 ~~~~~~~~viGIGINv~~~~~~~~-----~i-~~~atsL~~~~-~~~~r~~l~~~ll~~l~~~~~~~~~ 172 (238)
T COG0340 111 DENGLLAVVVGIGINVNNPPPDFE-----DI-GQPATSLQEEG-EEIDREELLAKLLKELEKYLRQFLR 172 (238)
T ss_pred cCCCceEEEEEEEEeeccCCcchh-----hh-hhhhhhHHhhh-CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2567899999999877662 12 24799999976 7899999999999999987765443
No 23
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=98.72 E-value=2.6e-07 Score=82.65 Aligned_cols=126 Identities=16% Similarity=0.135 Sum_probs=89.9
Q ss_pred CceEEEcCCCeEEEEeeecCCCCCCHHHHHHH-HHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeee-----
Q psy6495 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFVQS-IEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSS----- 157 (235)
Q Consensus 84 Gg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~-le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~----- 157 (235)
|..++.-||.|.+++++..+.....-..++.. .--+|+++|.. ++++...+. +||||+++ +|||||=+...
T Consensus 72 gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~Lsl~~alAv~~~L~~-~~~~~~IKW-PNDI~~~~-kKiaGILiE~~~~~~~ 148 (285)
T PTZ00275 72 DRIWLSEKGNLFTTFVFLWNRNDIEKVKYLAQTCTVAISKTLEY-FHLVTQIKW-INDVLVNY-KKIAGCLVHLYYLDDF 148 (285)
T ss_pred CCEEECCCCceEEEEEEecCCcCHhHhHHHHHHHHHHHHHHHHH-hCCceeEEC-CCccccCC-cEEEEEEEeeeecccc
Confidence 88888889988888888654322221112222 22478999999 999999998 99999999 99999977643
Q ss_pred ------CcEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCC-------CCHHHHHHHHHHHHHHhhcc
Q psy6495 158 ------LYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKD-------ITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 158 ------~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~-------~~~~~v~~~l~~~f~~~f~~ 219 (235)
.....-|+.|||+.. .| |..+. ...|||..+.+.. ++.+++...+++.|.+.+..
T Consensus 149 ~~~~~~~~~vViGIGINvn~~--~~----~~~~~-~~atSL~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~~ 216 (285)
T PTZ00275 149 PNLNSRYVCVMVGIGINVTLE--DK----HNLLN-NNYTSIKKELQRDFNTPKSIPSVEQVTEKLIINLKAVINK 216 (285)
T ss_pred ccccCceeEEEEEEEEecCCC--CC----ccccc-CCcccHHHHhCcccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 134678999999763 22 22222 3678998765533 46889999999999887753
No 24
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=98.71 E-value=2.6e-07 Score=80.95 Aligned_cols=129 Identities=13% Similarity=0.087 Sum_probs=89.5
Q ss_pred eccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHH-HHHHHHHHHhhhc--CCeeEeeCCCceEEeCCCCceeeeceee
Q psy6495 80 TNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQS-IEQTVIQLCKQEF--SLNAGLIPKYTGVFLDDEYKVCAIGVHS 156 (235)
Q Consensus 80 ~~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~-le~~vi~~L~~~~--Gi~a~~~~~~~gv~v~~~rKIa~iG~~~ 156 (235)
|-|.|..++..||.|.+..+++......+...++.. ..-++.++|++ + |+++..+. +||||+++ ||||||=+..
T Consensus 45 RGR~gR~W~Sp~g~l~~S~~l~~~~~~~~~~~~lsl~~alav~~al~~-~~~~~~~~iKW-PNDI~~~~-kKiaGILiE~ 121 (245)
T PTZ00276 45 RGTGGRTWTSPKGNMYFTLCIPQKGVPPELVPVLPLITGLACRAAIME-VLHGAAVHTKW-PNDIIYAG-KKIGGSLIES 121 (245)
T ss_pred CCCCCCcccCCCCCeEEEEEECCCccChhHhhHHHHHHHHHHHHHHHH-hccCCceEEEc-CCeeEECC-cEEEEEEEcc
Confidence 347788888889988888887544322221112221 22367888888 5 88999999 99999999 9999998875
Q ss_pred eCcEEEEeeeeecCCCccccccccCCCCCCCCee---eeccccC-CCCCHHHHHHHHHHHHHHhhc
Q psy6495 157 SLYITHHGLAINCDTDLTWFNHITPCGIKDKQVT---SLSKHLS-KDITVDTVVPLFKKHFESVFE 218 (235)
Q Consensus 157 ~~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vt---Sl~~~l~-~~~~~~~v~~~l~~~f~~~f~ 218 (235)
......-|+.+||+.+.. + |.. ....| |+..+++ ..++.+++...++++|.+.+.
T Consensus 122 ~~~~vvIGIGINv~~~~~-~----~~~--~~~~~~l~sl~~~~~~~~~~r~~l~~~ll~~~~~~~~ 180 (245)
T PTZ00276 122 EGEYLIIGIGMNIEVAPP-V----TDA--GRESTMVNEIAEDLGVKSVTPQDLAEAVWKHFFDICS 180 (245)
T ss_pred cCCEEEEEEEEeeCCCCC-C----Ccc--ccccccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 555678999999986532 1 111 11344 4444434 568899999999999988774
No 25
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=98.60 E-value=7.4e-07 Score=80.64 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=92.0
Q ss_pred ccCCceEEEcCC-CeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCC-eeEeeCCCceEEeCCCCceeeeceeeeC
Q psy6495 81 NRGGLITFHGPG-QLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSL-NAGLIPKYTGVFLDDEYKVCAIGVHSSL 158 (235)
Q Consensus 81 ~rGGg~tyHgpG-QLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi-~a~~~~~~~gv~v~~~rKIa~iG~~~~~ 158 (235)
-|.|..++..|| .|.+..+++..........+--...-++.++|.+ ++. +...+. +||||+++ +|||||=+....
T Consensus 116 GR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~~~av~~al~~-~~~~~~~iKW-PNDI~~~~-kKl~GIL~E~~~ 192 (319)
T PRK11886 116 GRRGRQWFSPFGGNLYLSLYWRLNQGPAQAMGLSLVVGIAIAEALRR-LGAIDVGLKW-PNDIYLND-RKLAGILVELSG 192 (319)
T ss_pred CCCCCcccCCCCCCEEEEEEeCCCCChHHHhhHHHHHHHHHHHHHHH-hcCCCcceeC-CceeeECC-eeEEEEEEEecc
Confidence 377888888889 5988888865421111111111223478899999 764 789999 99999999 999999876431
Q ss_pred -----cEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 159 -----YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 159 -----~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
....-|+.||++.+- | |..+.+...|||.++ +..++.+++...++++|...+..
T Consensus 193 ~~~~~~~~viGIGiNv~~~~--~----~~~~~~~~~~sl~~~-~~~~~~~~l~~~l~~~~~~~~~~ 251 (319)
T PRK11886 193 ETGDAAHVVIGIGINVAMPD--F----PEELIDQPWSDLQEA-GPTIDRNQLAAELIKQLRAALEL 251 (319)
T ss_pred CCCCccEEEEEEEEccCCCC--C----chhhhccceeeHhhc-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 246789999998752 1 222123467888875 88899999999999999887753
No 26
>PRK08477 biotin--protein ligase; Provisional
Probab=98.51 E-value=2.7e-06 Score=73.06 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=84.8
Q ss_pred eccCCceEEEcCCCeEEEEeeecCCCCCCHH----HHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeecee
Q psy6495 80 TNRGGLITFHGPGQLVAYPIINLKHFTPSIK----WFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVH 155 (235)
Q Consensus 80 ~~rGGg~tyHgpGQLv~y~il~l~~~~~~~~----~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~ 155 (235)
|-|.|..++..||.|.+..+++.......+. .++. .-++.+++.+ +|++...+. +|||++++ +|||||=+.
T Consensus 40 RGR~gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~~lsl~~--~~av~~~l~~-~~~~~~iKW-PNDI~~~~-kKi~GIL~E 114 (211)
T PRK08477 40 IGSRGNSWEGKKGNLFFSFALKESDLPKDLPLQSSSIYF--GFLLKEVLKE-LGSKVWLKW-PNDLYLDD-KKIGGVITN 114 (211)
T ss_pred CCCCCCcccCCCCCeEEEeecCCCcchhhhhhHHHHHHH--HHHHHHHHHH-hCCCeEEcC-CCeeEECC-cEEEEEEEe
Confidence 4467788888899887777775543211111 1222 2367889999 999999998 99999999 999999887
Q ss_pred eeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhh
Q psy6495 156 SSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVF 217 (235)
Q Consensus 156 ~~~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f 217 (235)
.......-|+.+|++..... .+| ++..++.+++...+.++|.+.+
T Consensus 115 ~~~~~vviGiGiNv~~~p~~-------------~~~----l~~~~~~~~ll~~l~~~~~~~~ 159 (211)
T PRK08477 115 KIKNFIVCGIGLNLKFSPKN-------------FAC----LDIEISDDLLLEGFLQKIEKKI 159 (211)
T ss_pred ecCCeEEEEEEEeeCCCCCc-------------ccc----ccCcCCHHHHHHHHHHHHHHHH
Confidence 55556778999999853221 233 3456788999999999999877
No 27
>PRK06955 biotin--protein ligase; Provisional
Probab=98.32 E-value=1.1e-05 Score=72.60 Aligned_cols=133 Identities=10% Similarity=0.088 Sum_probs=88.1
Q ss_pred eccCCceEEEcCCC-eEEEEeeecCCCCCCH--HHHHHHHHHHHHHHHhhhc----CCeeEeeCCCceEEeCCCCceeee
Q psy6495 80 TNRGGLITFHGPGQ-LVAYPIINLKHFTPSI--KWFVQSIEQTVIQLCKQEF----SLNAGLIPKYTGVFLDDEYKVCAI 152 (235)
Q Consensus 80 ~~rGGg~tyHgpGQ-Lv~y~il~l~~~~~~~--~~~~~~le~~vi~~L~~~~----Gi~a~~~~~~~gv~v~~~rKIa~i 152 (235)
|-|.|..++-.||+ |.+..+++.......+ -.++.. =+++++|++ + ++++..+. +||||+++ ||||||
T Consensus 77 RGR~GR~W~Sp~G~~L~~Si~l~~~~~~~~~~~Lsl~~g--lAv~~al~~-~~~~~~~~~~iKW-PNDIl~~g-kKiaGI 151 (300)
T PRK06955 77 RGRQGRPWFAQPGNALLFSVACVLPRPVAALAGLSLAVG--VALAEALAA-LPAALGQRIALKW-PNDLLIAG-RKLAGI 151 (300)
T ss_pred CCCCcCcccCCCCCcEEEEeEecCCCChHHhhhHHHHHH--HHHHHHHHH-hhcccCCceeeeC-CceeeECC-cEEEEE
Confidence 35889999999995 8888877654211111 112222 267778887 6 67899999 99999999 999999
Q ss_pred ceeee---C--cEEEEeeeeecCCCccc---cc----cccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 153 GVHSS---L--YITHHGLAINCDTDLTW---FN----HITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 153 G~~~~---~--~vt~hG~alNv~~dl~~---f~----~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
=+... . ....-|+.|||+...+. .. ...|.. .+...+++.. .+..++.+++...+++.|.+.+..
T Consensus 152 LiE~~~~~~~~~~vVIGIGINv~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~-~~~~~~~~~ll~~ll~~l~~~~~~ 228 (300)
T PRK06955 152 LIETVWATPDATAVVIGIGLNVRRADAVAAEVDALRAREAALA-RGLPPVALAA-ACAGANLTDTLAAALNALAPALQA 228 (300)
T ss_pred EEEcccCCCCccEEEEEEEEeeCCCcccccccccccccccccc-ccccchhhhh-cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 87642 1 24678999999865320 00 001111 1223455544 467889999999999999887763
No 28
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=98.14 E-value=2.8e-05 Score=76.21 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=88.7
Q ss_pred eccCCceEEEcCCC-eEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeC
Q psy6495 80 TNRGGLITFHGPGQ-LVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSL 158 (235)
Q Consensus 80 ~~rGGg~tyHgpGQ-Lv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~ 158 (235)
|-|.|..++..||+ |.+..++..+.....+..+--..--++.++|++ +|++...+. +||||+++ ||+|||=+....
T Consensus 122 RGRrGR~W~Sp~G~~Ly~S~~l~~~~~~~~~~~Lsl~vgvAv~~aL~~-~g~~v~lKW-PNDIl~~g-kKlaGILiE~~~ 198 (592)
T PRK13325 122 RGRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSPVAAVACRRALSR-LGLKTQIKW-PNDLVVGR-DKLGGILIETVR 198 (592)
T ss_pred CCCCCCcccCCCCCcEEEEeeecCCCChhhhhhHHHHHHHHHHHHHHH-cCCCceEeC-cceEEECC-ceEEEEEEeeee
Confidence 34888998888995 888888855421111222222223478999999 999999999 99999999 999999887542
Q ss_pred ----cEEEEeeeeecCCCccccccccCCCCCC-CCeeeeccccC--CCCCHHHHHHHHHHHHHHhhcc
Q psy6495 159 ----YITHHGLAINCDTDLTWFNHITPCGIKD-KQVTSLSKHLS--KDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 159 ----~vt~hG~alNv~~dl~~f~~i~pcGl~~-~~vtSl~~~l~--~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
....-|+.|||+. |..+.. ...+||....+ ..++.+++...++++|.+.+..
T Consensus 199 ~~~~~~vVIGIGINv~~---------p~~~~~~~~~~sL~~~~~~~~~~dr~~ll~~ll~~l~~~l~~ 257 (592)
T PRK13325 199 TGGKTVAVVGIGINFVL---------PKEVENAASVQSLFQTASRRGNADAAVLLETLLAELDAVLLQ 257 (592)
T ss_pred cCCCcEEEEEEEEeeCC---------CcccccCcChHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2357899999973 222221 23456654332 3578889999999998887763
No 29
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=95.69 E-value=0.13 Score=42.94 Aligned_cols=86 Identities=14% Similarity=0.228 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeeccc
Q psy6495 116 IEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKH 195 (235)
Q Consensus 116 le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~ 195 (235)
|-..+.+.|.+ +|++..++ -.|+|+++ ||++-.=...+---+.-++.+||+.+=.| +..-||.+
T Consensus 87 lv~i~kE~L~~-~gv~~~R~--GDDLy~~~-~KLSVSIAt~s~vS~kIH~GiNV~~~g~p---V~aigL~d--------- 150 (183)
T PF04017_consen 87 LVAIIKEVLEE-YGVKLRRE--GDDLYVNG-RKLSVSIATASPVSTKIHFGINVSSEGTP---VPAIGLED--------- 150 (183)
T ss_dssp HHHHHHHHHHT-TT--EEEE--TTEEEETT-EE-EEEEEEEETTEEEEEEEEESS-TT-----S-B--TTT---------
T ss_pred HHHHHHHHHHh-cCCceeec--ccceeECC-CEEEEEEEecCcchheEEEeEeecccCcc---ccccCHHH---------
Confidence 34566778888 99998887 78999999 99874322345555557789999998554 12224443
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhc
Q psy6495 196 LSKDITVDTVVPLFKKHFESVFE 218 (235)
Q Consensus 196 l~~~~~~~~v~~~l~~~f~~~f~ 218 (235)
+|.. +.+++.+.+.+.+.+.+.
T Consensus 151 lgi~-~~~~~~~~i~~~y~~E~~ 172 (183)
T PF04017_consen 151 LGIE-DIDELMERIAKRYVEEIE 172 (183)
T ss_dssp TT---HH-HHHHHHHHHHHHHHH
T ss_pred cCCc-cHHHHHHHHHHHHHHHHH
Confidence 4432 233666666666666553
No 30
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.26 Score=40.76 Aligned_cols=85 Identities=12% Similarity=0.182 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcEEE-EeeeeecCCCccccccccCCCCCCCCeeeeccc
Q psy6495 117 EQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITH-HGLAINCDTDLTWFNHITPCGIKDKQVTSLSKH 195 (235)
Q Consensus 117 e~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt~-hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~ 195 (235)
-..+.+.|.. +|+++.+. -.|+|+++ ||++- -++....+++ -++.+||... |.++....+|.+
T Consensus 91 v~i~~E~l~~-~gv~~~Re--GDDly~~g-rKLtV-sIat~s~vs~kiHlGiNV~t~----------g~p~V~~igL~d- 154 (189)
T COG2029 91 VAILKEVLEK-LGVDLSRE--GDDLYVEG-RKLTV-SIATVSPVSSKIHLGINVKTE----------GVPDVDAIGLED- 154 (189)
T ss_pred HHHHHHHHHH-hCCccccc--CCceeecC-cEEEE-EEEecCCcceeEEEeEeeecc----------cCCCCCcccccc-
Confidence 4556677888 99999887 78999999 99864 3444444444 4567999875 444555666666
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhc
Q psy6495 196 LSKDITVDTVVPLFKKHFESVFE 218 (235)
Q Consensus 196 l~~~~~~~~v~~~l~~~f~~~f~ 218 (235)
+|. .++.++.+.+..+|.+.+.
T Consensus 155 lg~-~Di~~~m~~va~~yv~Eie 176 (189)
T COG2029 155 LGY-GDILEFMERVAVAYVREIE 176 (189)
T ss_pred cCC-CCHHHHHHHHHHHHHHHHH
Confidence 454 5777777777777776654
No 31
>KOG1536|consensus
Probab=94.62 E-value=0.5 Score=45.88 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=83.2
Q ss_pred EEeccCCceEEEcCCCeEEEEeeecCCC--CCCHHHHHHHH-HHHHHHHHhhhc---CCeeEeeCCCceEEeCCCCceee
Q psy6495 78 YKTNRGGLITFHGPGQLVAYPIINLKHF--TPSIKWFVQSI-EQTVIQLCKQEF---SLNAGLIPKYTGVFLDDEYKVCA 151 (235)
Q Consensus 78 ~r~~rGGg~tyHgpGQLv~y~il~l~~~--~~~~~~~~~~l-e~~vi~~L~~~~---Gi~a~~~~~~~gv~v~~~rKIa~ 151 (235)
-=|-|||..+.---|-+...+++..... -..+-.|+..+ .-+++.++...= .|++..+. +||+|+.+--||+|
T Consensus 423 sGRGRGgN~WlsP~G~~~~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~~~pGy~dIpvrIKW-PNDlY~~~~lKvgG 501 (649)
T KOG1536|consen 423 SGRGRGGNVWLSPKGCAMSSFTISMPLKSRVVPLIPFVQHLALVAVVEAVRYAPGYPDIPVRIKW-PNDLYVNGYLKVGG 501 (649)
T ss_pred ecccCCCCeeecCcceEeEEEEEEeecccccccchHHHHHHHHHHHHHHHhcCCCCCCCceeeec-Cccceeeeccccce
Confidence 3456999988888899988999877542 23333444443 233444444322 47789998 99999998789999
Q ss_pred ecee--eeC--cEEEEeeeeecCCCcc-c-cccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 152 IGVH--SSL--YITHHGLAINCDTDLT-W-FNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 152 iG~~--~~~--~vt~hG~alNv~~dl~-~-f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
+=+. .++ ....-|..+||++|=. . .+.+++. + .=++-..+ .++.-|++.-+++..|.+.|..
T Consensus 502 iLv~st~r~n~f~v~iGCGiNVtN~~PT~cLN~ll~~-~---n~e~~~~~--l~~k~EkLiA~~~n~fe~~~k~ 569 (649)
T KOG1536|consen 502 ILVTSTYRSNKFNVSIGCGINVTNDGPTTCLNDLLDE-M---NEERNLLH--LAIKAEKLIAAVFNKFEKYFKL 569 (649)
T ss_pred EEEEeeecCceEEEEEeeeeEecCCCCceeHHHHHHh-h---chhhcccc--chhhHHHHHHHHHHHHHHHHHH
Confidence 8775 333 4556899999999721 1 0111110 0 00111111 1467788888888888877654
No 32
>KOG0325|consensus
Probab=87.58 E-value=0.3 Score=42.09 Aligned_cols=32 Identities=16% Similarity=0.053 Sum_probs=27.7
Q ss_pred cCCCcEEEeccCCceEEEcCCCeEEEEeeecCC
Q psy6495 72 KLGADFYKTNRGGLITFHGPGQLVAYPIINLKH 104 (235)
Q Consensus 72 ~~gi~v~r~~rGGg~tyHgpGQLv~y~il~l~~ 104 (235)
...+.++.+.+|+++|||| ++|++|+.+...+
T Consensus 141 d~k~aaiGi~vsr~IT~HG-laLN~~tDL~~fn 172 (226)
T KOG0325|consen 141 DAKIAAIGIRVSREITYHG-LALNVNTDLTYFN 172 (226)
T ss_pred CCeeEEEEEEecCcEeecc-eEEEeccCcchhh
Confidence 3467889999999999999 9999999887654
No 33
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=47.85 E-value=13 Score=20.67 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=10.0
Q ss_pred eEEEcCCCeEEEE
Q psy6495 86 ITFHGPGQLVAYP 98 (235)
Q Consensus 86 ~tyHgpGQLv~y~ 98 (235)
++||||+++-+--
T Consensus 4 v~y~G~~~v~ve~ 16 (23)
T PF13823_consen 4 VVYHGPKDVRVEE 16 (23)
T ss_dssp EEEEETTEEEEEE
T ss_pred eEEeCCCceEEEE
Confidence 6899999886543
No 34
>PF09322 DUF1979: Domain of unknown function (DUF1979); InterPro: IPR015401 This N-terminal domain is functionally uncharacterised and found in various Oryza sativa (Rice) mutator-like transposases.
Probab=45.28 E-value=30 Score=23.27 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=8.0
Q ss_pred EEEcCCCeEE
Q psy6495 87 TFHGPGQLVA 96 (235)
Q Consensus 87 tyHgpGQLv~ 96 (235)
.||++|++-+
T Consensus 9 ~~hg~GNvR~ 18 (58)
T PF09322_consen 9 IYHGEGNVRY 18 (58)
T ss_pred EEEcCCceeE
Confidence 5899998854
No 35
>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.67 E-value=18 Score=36.75 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=77.6
Q ss_pred EcCCCeEEEEeeecCC--C-CCCHHHHHHHHHHHHHHHHhhhcCCe-eEeeCCCceEE----eCC----------CCcee
Q psy6495 89 HGPGQLVAYPIINLKH--F-TPSIKWFVQSIEQTVIQLCKQEFSLN-AGLIPKYTGVF----LDD----------EYKVC 150 (235)
Q Consensus 89 HgpGQLv~y~il~l~~--~-~~~~~~~~~~le~~vi~~L~~~~Gi~-a~~~~~~~gv~----v~~----------~rKIa 150 (235)
|.|.+...||++.-+- . +.++.++-.. ..--.+|+..+|+. ++..|.+|.+- =.+ +.|+|
T Consensus 529 ~~~~~~~~~PmvrGRl~aiNGq~v~~~~~~--~~~~~al~rd~~LT~~~~~P~~n~l~aG~Ww~~~~~g~P~VS~e~~~A 606 (829)
T COG3127 529 ASPEGETFYPMVRGRLTAINGQPVTEMSVP--PSARWALRRDLNLTWAEKRPENNPLTAGRWWPKNDSGEPEVSMEEGEA 606 (829)
T ss_pred cCCCcccccceeeeeEEEecCccCccccCC--chHHHHHhcccCcchhhcCCCCCccccccCCCCCCCCCCccchhHhHH
Confidence 5677788888886542 1 2334432221 12345665559998 67777666652 111 14666
Q ss_pred e-eceeeeCcEEEEeeeeecCCCcc------------ccccc-cCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHh
Q psy6495 151 A-IGVHSSLYITHHGLAINCDTDLT------------WFNHI-TPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESV 216 (235)
Q Consensus 151 ~-iG~~~~~~vt~hG~alNv~~dl~------------~f~~i-~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~ 216 (235)
. +|+++.+-+|+-+..=|++.-++ +|--| .|--+.|...|.|... ..+-.- ..+..++.+.
T Consensus 607 ~~LglKLGDtvTf~v~gq~i~A~I~slR~VeWesl~pNF~~IF~P~tl~g~P~twltsf-r~~~~~----~~~l~ql~r~ 681 (829)
T COG3127 607 KRLGLKLGDTVTFMVLGQNITAKITSLRKVEWESLRPNFYMIFSPGTLDGAPQTWLTSF-RIPNGQ----AALLRQLTRA 681 (829)
T ss_pred HHhCCccCCEEEEEeccceEEeeeceeeeeccccccccEEEEeCchhhcCCchhhheee-ecCCcc----hHHHHHHHHh
Confidence 5 88899999999887777765433 34444 3555666666666552 211111 4555556666
Q ss_pred hcccccccCcHHHHhhhc
Q psy6495 217 FECECSEVELDEEIKHLN 234 (235)
Q Consensus 217 f~~~~~~~~~~~~~~~~~ 234 (235)
|.. ....|..++++..|
T Consensus 682 fPt-vt~v~v~~~L~~v~ 698 (829)
T COG3127 682 FPT-VTLVDVGAALDQVN 698 (829)
T ss_pred CCc-eEEeeHHHHHHHHH
Confidence 652 23455556665544
No 36
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=32.75 E-value=67 Score=29.00 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=33.0
Q ss_pred CeEEEccCccccc-chhhHhhhccCCCcEEEeccCCceEEEcCCCeE
Q psy6495 50 PVYTIGIRSLKEY-DENLELKLNKLGADFYKTNRGGLITFHGPGQLV 95 (235)
Q Consensus 50 pv~TiGr~~~~~~-~~~~~~~l~~~gi~v~r~~rGGg~tyHgpGQLv 95 (235)
++++.|+.-.=.+ ...-.+.+++.+++++||++=|.+++-..|+-.
T Consensus 235 AliS~G~~N~yghPh~~Vl~rl~~~~~~v~rTd~~G~I~~~~~~~~~ 281 (293)
T COG2333 235 ALISSGRNNRYGHPHQEVLERLQKRGIKVYRTDQQGAITVTFSGDGW 281 (293)
T ss_pred EEEEeeccCCCCCCcHHHHHHHHhcCCeEEecCCCCeEEEEeCCCeE
Confidence 4677787321111 123467899999999999999999999988653
No 37
>KOG2840|consensus
Probab=26.97 E-value=16 Score=33.52 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=52.6
Q ss_pred EcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeE-eeC-CCceEEeCCCCceeeeceeeeCcEEEEe
Q psy6495 89 HGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAG-LIP-KYTGVFLDDEYKVCAIGVHSSLYITHHG 164 (235)
Q Consensus 89 HgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~-~~~-~~~gv~v~~~rKIa~iG~~~~~~vt~hG 164 (235)
|+||--. ++++.. ..++.|....+.++.+.-.+ +|+|-. .+. ...|.|.-+ ++++.+|..+++..|+-|
T Consensus 78 ~~~g~~l--~Lls~d---egi~gyrd~sl~avkrn~~~-~~lPL~ivs~~dl~~~~tmd-~i~~~i~~~~rn~ctfCg 148 (347)
T KOG2840|consen 78 HDYGLRL--FLLSID---EGIRGYRDDSLEAVKRNGVQ-YGLPLCIVSYKDLYGEWTMD-EIVSEIGQEIRNNCTFCG 148 (347)
T ss_pred cCCCcee--eeeecc---ccccceeccHHHHHHHhhhh-cCCceEEecHHHHhccchHH-HHHHHHhhhhhcCceeec
Confidence 6676542 233232 36778888888999999999 999943 332 368999999 999999999889999988
No 38
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=26.32 E-value=1.6e+02 Score=29.28 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=51.2
Q ss_pred hhccCCCcEEEeccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCC
Q psy6495 69 KLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDD 145 (235)
Q Consensus 69 ~l~~~gi~v~r~~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~ 145 (235)
.|+++|.++...+-|||.-.--.|.-.-+. .+.+.++++|.+.+-..+.++|.+ .|+ | .|.|..+.
T Consensus 292 EL~klGa~i~~~dVGGGLgVDYdGt~t~~~----~S~NY~l~eYA~dVV~~l~d~C~~-~~~-----p-~P~IisES 357 (652)
T COG1166 292 ELRKLGANIKYFDVGGGLGVDYDGTRTQSD----CSKNYGLNEYANDVVWALKDACEE-KGL-----P-HPTIISES 357 (652)
T ss_pred HHHHcCCCceEEeccCceeecccCcccccc----ccccCCHHHHHHHHHHHHHHHHHh-cCC-----C-CCeEEeec
Confidence 578999999999999998766665442221 234679999999999999999999 885 4 67777766
No 39
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=26.16 E-value=48 Score=31.31 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCe-eEeeCCCceEE---------e-CCCCceeeeceeeeCcEEEEeeeeecC
Q psy6495 111 WFVQSIEQTVIQLCKQEFSLN-AGLIPKYTGVF---------L-DDEYKVCAIGVHSSLYITHHGLAINCD 170 (235)
Q Consensus 111 ~~~~~le~~vi~~L~~~~Gi~-a~~~~~~~gv~---------v-~~~rKIa~iG~~~~~~vt~hG~alNv~ 170 (235)
+|++.+|+..++..++.||.+ |..+| ..|-- + .| .+|.++-+. ..|-..||-.+|++
T Consensus 68 e~VD~vE~laierak~LFga~~anVQP-hSGs~AN~av~~All~pG-Dtimgm~l~-~GGHltHg~~v~~s 135 (413)
T COG0112 68 EYVDEVEELAIERAKKLFGAEYANVQP-HSGSQANQAVYLALLQPG-DTIMGLDLS-HGGHLTHGSPVNFS 135 (413)
T ss_pred eeHHHHHHHHHHHHHHHhCCCccccCC-CCchHHHHHHHHHHcCCC-CeEecccCC-CCCcccCCCCCCcc
Confidence 589999999999999999998 77777 66631 1 34 788777665 45666777555544
No 40
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=26.08 E-value=1.9e+02 Score=25.37 Aligned_cols=57 Identities=9% Similarity=0.269 Sum_probs=28.4
Q ss_pred eCcEEEEeeeeecCCCccccccc--cCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhc
Q psy6495 157 SLYITHHGLAINCDTDLTWFNHI--TPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 218 (235)
Q Consensus 157 ~~~vt~hG~alNv~~dl~~f~~i--~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 218 (235)
.++...-|.+. |..|..+|..+ +|..+.+..+.-|++ +..+ ++..+.+.++|...|.
T Consensus 159 G~~a~Vg~gs~-V~~dVpp~~i~~G~pa~~~~~n~vgl~r---~g~~-~~~~~~~~~~~~~~~~ 217 (255)
T PRK12461 159 GALAMMAGGSR-ISKDVPPYCMMAGHPTNVHGLNAVGLRR---RGFS-SRAIRALKRAYKIIYR 217 (255)
T ss_pred CCCcEECCCce-EeccCCCCeEEecCcceEeccchhhhhh---cCCC-HHHHHHHHHHHHHHHh
Confidence 33334433333 66777777655 344444444444444 2344 3344456666666664
No 41
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=25.24 E-value=2.7e+02 Score=24.35 Aligned_cols=45 Identities=9% Similarity=-0.009 Sum_probs=30.9
Q ss_pred EEeeecCCCC-CCHHHHHHHHHHHHHHHHhhhcCCeeEeeC-CCceEEe
Q psy6495 97 YPIINLKHFT-PSIKWFVQSIEQTVIQLCKQEFSLNAGLIP-KYTGVFL 143 (235)
Q Consensus 97 y~il~l~~~~-~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~-~~~gv~v 143 (235)
+.++||+... .++.+ +......+-+.|.+ +|+++..+- |..|+.|
T Consensus 104 ~~vfDLDP~~~~~f~~-v~~~A~~~r~~L~~-lgL~s~~KTSG~kGlHV 150 (231)
T cd04863 104 RLVFDLDPGEPAGLVE-CARVALWLRDRLAA-LGLASFPKTSGSKGLHL 150 (231)
T ss_pred EEEEECCCCCCCCHHH-HHHHHHHHHHHHHH-cCCccceECCCCCeEEE
Confidence 4578888643 45554 44556778889999 999977543 5677655
No 42
>PHA02539 18 tail sheath protein; Provisional
Probab=24.81 E-value=92 Score=31.34 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=46.3
Q ss_pred hHhhhccCCCcEEEecc-CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhh
Q psy6495 66 LELKLNKLGADFYKTNR-GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQ 126 (235)
Q Consensus 66 ~~~~l~~~gi~v~r~~r-GGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~ 126 (235)
..+.|...||..+|... |+|....|.--+..|| ......++|++...+|+.+.+++..
T Consensus 504 q~n~LN~~GINtIr~F~~G~G~rLWGaRTls~~p---s~wryInVRRLf~~Ie~SI~~~~~~ 562 (648)
T PHA02539 504 QRDRLYQNRINPVVGFAGGQGIVLFGDKTATAVP---SAFDRINVRRLFNMLKKNIGDAAKY 562 (648)
T ss_pred HHhhhhhcceEEEEecCCCCEEEEEccccCCCCC---CcceeeehhhHHHHHHHHHHHhhhh
Confidence 44568889999998888 8899999998886677 2223578888999999888888877
No 43
>PRK11835 hypothetical protein; Provisional
Probab=21.36 E-value=2.9e+02 Score=21.40 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEeccC
Q psy6495 14 SYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (235)
Q Consensus 14 ~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (235)
+-..||.+++.+.....+= .... .++=||=.||.=+-|.. +....=.|+..|+.+....+|
T Consensus 50 dg~~aw~vm~~L~~sL~ei---qv~~--~ivEweGepCLFv~~~D----E~aa~CrLKn~GVAIAE~~~~ 110 (114)
T PRK11835 50 DGDNAWSVMQKLSQALSDI---QVPC--SVLECEGEPCLFVNRQD----ESAATCRLKNFGVAIAEPFSA 110 (114)
T ss_pred CChhHHHHHHHHHHHHHhh---cccc--eEEEecCCceEEEeccc----chhhheeeccCcEEEeccccc
Confidence 4467899999998888764 4556 88889999999887765 212233567888888776654
No 44
>COG3955 Exopolysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=20.66 E-value=60 Score=27.35 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=39.2
Q ss_pred hhccCCCcEEEeccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHH
Q psy6495 69 KLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQ 118 (235)
Q Consensus 69 ~l~~~gi~v~r~~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~ 118 (235)
.|-++++.|+.-+-=||.++|+.||-.-.|.+++= ....+|++-+|.
T Consensus 26 kl~~~~~TIISnnCvGg~I~~~Lg~~fnsPFvnly---l~pdDy~k~len 72 (211)
T COG3955 26 KLIENPITIISNNCVGGLISHDLGFKFNSPFVNLY---LSPDDYLKFLEN 72 (211)
T ss_pred HhhcCCcEEEecCceehhhhhhcCCccCCCceEEE---echHHHHHHHhh
Confidence 45678999999999999999999999999998773 566778877655
No 45
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=20.46 E-value=1.1e+02 Score=19.44 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhcc
Q psy6495 198 KDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 198 ~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
.+++++|+...+.+.|...|+.
T Consensus 19 gPPDLdel~r~l~~kl~~~fgg 40 (42)
T PF12221_consen 19 GPPDLDELFRKLQDKLGGLFGG 40 (42)
T ss_pred CCCCHHHHHHHHHHHHhcccCC
Confidence 3799999999999999988873
Done!