Query psy6495
Match_columns 235
No_of_seqs 129 out of 1044
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 19:35:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w66_A Lipoyltransferase; lipo 100.0 1.3E-62 4.4E-67 424.7 23.1 206 3-224 12-220 (232)
2 2qhs_A Lipoyltransferase; glob 100.0 3.9E-60 1.3E-64 410.6 24.0 217 3-229 21-237 (237)
3 2p0l_A Lipoate-protein ligase 100.0 1.1E-44 3.9E-49 321.6 22.3 210 3-220 11-249 (288)
4 2p5i_A BH3822 protein; PFAM030 100.0 8.5E-45 2.9E-49 322.4 21.0 214 4-227 14-256 (288)
5 2c8m_A Lipoate-protein ligase 100.0 1.3E-44 4.4E-49 317.0 19.6 211 2-226 1-231 (262)
6 1vqz_A Lipoate-protein ligase, 100.0 2.7E-42 9.4E-47 312.9 22.5 202 5-220 13-224 (341)
7 3a7r_A Lipoate-protein ligase 100.0 4.8E-41 1.7E-45 304.3 18.2 205 4-225 2-219 (337)
8 2e5a_A Lipoyltransferase 1; li 100.0 6.2E-39 2.1E-43 291.5 19.2 202 4-220 4-216 (347)
9 2eay_A Biotin [acetyl-COA-carb 99.0 2.8E-09 9.6E-14 91.3 13.6 130 80-219 38-167 (233)
10 2dxu_A Biotin--[acetyl-COA-car 99.0 1.8E-09 6.1E-14 92.7 11.5 123 81-218 47-169 (235)
11 3rkx_A Biotin-[acetyl-COA-carb 99.0 7E-09 2.4E-13 92.9 14.2 131 81-219 121-258 (323)
12 2ej9_A Putative biotin ligase; 98.8 2.7E-08 9.4E-13 85.3 11.8 128 80-219 38-169 (237)
13 3rux_A BIRA bifunctional prote 98.8 4E-08 1.4E-12 85.9 12.5 128 81-219 72-204 (270)
14 3bfm_A Biotin protein ligase-l 98.8 8.4E-08 2.9E-12 82.1 13.7 124 83-219 37-173 (235)
15 1bia_A BIRA bifunctional prote 98.8 9.6E-08 3.3E-12 85.2 13.6 128 82-219 118-252 (321)
16 2ddz_A 190AA long hypothetical 96.3 0.034 1.2E-06 45.5 10.3 108 94-218 67-177 (190)
17 2iru_A Putative DNA ligase-lik 21.3 1.9E+02 0.0067 25.0 6.3 45 97-143 136-182 (303)
No 1
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=100.00 E-value=1.3e-62 Score=424.71 Aligned_cols=206 Identities=39% Similarity=0.612 Sum_probs=190.7
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEecc
Q psy6495 3 KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (235)
Q Consensus 3 ~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (235)
..++++++|++||.++|++|+.+++.+.++ .+| +||||||||+||+|++| +.. .+...||+|+||+|
T Consensus 12 ~~~~~~~lg~~~Y~~a~~~q~~l~~~~~~~----~~d--~l~l~eh~pv~TiG~~q-~~~------~l~~~gi~Vvr~~r 78 (232)
T 1w66_A 12 SAIDVRQLGTVDYRTAWQLQRELADARVAG----GAD--TLLLLEHPAVYTAGRRT-ETH------ERPIDGTPVVDTDR 78 (232)
T ss_dssp SCCEEEEEEECCHHHHHHHHHHHHHHHHTT----CCC--EEEEEECCSEEEECTTC-CGG------GSCTTCCCCEECSS
T ss_pred ceEEEEeCCCcCHHHHHHHHHHHHHHhhCC----CCC--EEEEEecCCEEEeCCCC-Chh------hhcccCCeEEEecC
Confidence 468999999999999999999999998753 457 99999999999999999 322 24467999999999
Q ss_pred CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeC---CCCceeeeceeeeCc
Q psy6495 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLD---DEYKVCAIGVHSSLY 159 (235)
Q Consensus 83 GGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~---~~rKIa~iG~~~~~~ 159 (235)
||++|||||||+|+|||+++++ +.++++|++.||+++|++|++ |||+|++.+++|||||+ + |||||+|+++++|
T Consensus 79 GG~~tYHgPGQlv~Y~Il~l~~-~~~v~~~v~~le~~vI~~L~~-~Gi~a~~~~g~~gV~v~~~~~-rKIaaig~r~~~~ 155 (232)
T 1w66_A 79 GGKITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCAD-LGLHAGRVDGRSGVWLPGRPA-RKVAAIGVRVSRA 155 (232)
T ss_dssp SSSEEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHH-TTCCCEEETTEEEEEECSSSC-EEEEEEEEEEETT
T ss_pred CCceEEECCCCeEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHH-cCCCeEecCCCCeEEecCCCC-CEEEEeeeeeeCC
Confidence 9999999999999999999987 789999999999999999999 99999998889999999 8 9999999999999
Q ss_pred EEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhccccccc
Q psy6495 160 ITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEV 224 (235)
Q Consensus 160 vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~~ 224 (235)
+|+||++||+++||++|..|+|||+.++.||||+++++.++++++++++++++|++.|+......
T Consensus 156 vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~~~~~ev~~~l~~~f~~~~~~~~~~~ 220 (232)
T 1w66_A 156 TTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVLPVG 220 (232)
T ss_dssp EEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTCCC--
T ss_pred EEEcceEEecCcChHHhcCccccccCCCceeeeHHHhCCCCCHHHHHHHHHHHHHHHhCcccccc
Confidence 99999999999999999999999999999999998899999999999999999999999876443
No 2
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=100.00 E-value=3.9e-60 Score=410.59 Aligned_cols=217 Identities=33% Similarity=0.545 Sum_probs=198.6
Q ss_pred ceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEecc
Q psy6495 3 KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNR 82 (235)
Q Consensus 3 ~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~r 82 (235)
.+++++++|++||.++|++|+.+++.+.++ ..++ +|+||||||+||+|++|...+.+++.++|++.||+|+||+|
T Consensus 21 ~~~~~~~~g~~~y~~~~a~~e~l~~~~~~g---~~~~--~L~l~eh~p~~tlG~~q~~~~~~~~~~~l~~~gi~vvrr~r 95 (237)
T 2qhs_A 21 MEFLVEDLGLVPYGEAWAYQKRVHREVVAG---NRPP--TLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVER 95 (237)
T ss_dssp CEEEEEEEEECCHHHHHHHHHHHHHHHHTT---CSCC--EEEEEECSSEEEECTTCCGGGBSSCHHHHHHTTCEEEECCS
T ss_pred CeEEEEeCCCcCHHHHHHHHHHHHHHHhcC---CCCC--EEEEEeCCCEEEeCCCCCchhcccCHHHHHhcCCeEEEEcC
Confidence 478999999999999999999999998764 4567 99999999999999999544444789999999999999999
Q ss_pred CCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcEEE
Q psy6495 83 GGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITH 162 (235)
Q Consensus 83 GGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt~ 162 (235)
||++|||||||+++|||+++++ ++++|++.||++++++|++ |||+|++.+++|||||++ |||||+|+++++|+++
T Consensus 96 GGgavyH~pGqlv~Y~i~~~~~---~~~~~~~~l~~~ii~~L~~-lGi~a~~~~g~~dv~v~g-rKIag~g~~~~~~~~~ 170 (237)
T 2qhs_A 96 GGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAG-YGISAYPTPGYAGVWVGE-DKLCAIGVAVKEGVSF 170 (237)
T ss_dssp SSSEEEECTTEEEEEEECCCTT---CHHHHHHHHHHHHHHHHHH-TTCCCBCCSSSSSEEETT-EEEEEEEEEEETTEEE
T ss_pred CCEEEEECCCCEEEEEEEECCc---CHHHHHHHHHHHHHHHHHH-cCCcEEEeCCCCCEEECC-cEEEEEeEEeeCCeEE
Confidence 9999999999999999999876 8999999999999999999 999999977899999999 9999999999999999
Q ss_pred EeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcccccccCcHHH
Q psy6495 163 HGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEE 229 (235)
Q Consensus 163 hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~~~~~~~ 229 (235)
||++||+++|++.|..|+|||+.++.||||+++++.++++++++++++++|++.|+.+..+.+++++
T Consensus 171 hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~l~~~~~~~ev~~~l~~~f~~~~~~~~~~~~lt~~ 237 (237)
T 2qhs_A 171 HGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVEGSVHEA 237 (237)
T ss_dssp EEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTCEEC-------
T ss_pred EeEEEecccChHHhcCcCcCccCCCcEEeHHHhhCCCCCHHHHHHHHHHHHHHHhCCccccCCCCCC
Confidence 9999999999999999999999999999999989999999999999999999999999888887764
No 3
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=100.00 E-value=1.1e-44 Score=321.65 Aligned_cols=210 Identities=12% Similarity=0.039 Sum_probs=185.6
Q ss_pred ceeEEEEc---CCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccC--cccccchhhHhhhccCCCcE
Q psy6495 3 KQVQLVRL---GVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIR--SLKEYDENLELKLNKLGADF 77 (235)
Q Consensus 3 ~~~~~~~l---g~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~--~~~~~~~~~~~~l~~~gi~v 77 (235)
..+++++. |..++..+|++|+.+++.+..+ ..++ +|+||+|||+||+|++ | +++.+++.++|++.||+|
T Consensus 11 ~~~r~i~~~~~~~~d~~~nlAlde~Ll~~~~~g---~~~~--~L~l~~~~p~vtlG~~~~q-~~~~e~~~~~~~~~gi~v 84 (288)
T 2p0l_A 11 LPVSIFKDYVTDAQDAEKPFIWTEVFLREINRS---NQEI--ILHIWPMTKTVILGMLDRE-LPHLELAKKEIISRGYEP 84 (288)
T ss_dssp SCEEEEECCBCSGGGTTHHHHHHHHHHHHHHHS---CSCE--EEEECCBSSEEEECTTGGG-CTTHHHHHHHHHTTTCEE
T ss_pred CcEEEEECCCCCCCCHHHHHHHHHHHHHhhhcC---CCCC--EEEEecCCCEEEECCCCCC-CcchhhhHHHHHHCCCEE
Confidence 45889987 7789999999999999998764 3456 9999999999999999 6 566677889999999999
Q ss_pred EEeccCCceEEEcCCCeEEEEeeecC-CCCCCHHHHHHHHHHHHHHHHhhhcCCeeEee-------CCCceEEeCCCCce
Q psy6495 78 YKTNRGGLITFHGPGQLVAYPIINLK-HFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLI-------PKYTGVFLDDEYKV 149 (235)
Q Consensus 78 ~r~~rGGg~tyHgpGQLv~y~il~l~-~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~-------~~~~gv~v~~~rKI 149 (235)
+||+||||+|||||||+++++|++.+ ..+.+++++++.++++++++|++ |||++++. +|++||||++ +||
T Consensus 85 vRR~sGGgaVyHdpG~l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL~~-lGi~a~~~~~~~~~c~g~~Dl~v~g-rKI 162 (288)
T 2p0l_A 85 VVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSD-FYQPIEHFEVETSYCPGKFDLSING-KKF 162 (288)
T ss_dssp EECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTT-SCSCCEECCCTTSSSCCTTCEEETT-EEE
T ss_pred EEEcCCCCeEEECCCcEEEEEEEcCccccCCCHHHHHHHHHHHHHHHHHH-cCCcEEEccccCCCCCCCccEEECC-EEE
Confidence 99999999999999997555555776 45679999999999999999999 99998873 7899999999 999
Q ss_pred eeeceeeeCcEEEEeeeeecCCCccc--------cccc--------cCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHH
Q psy6495 150 CAIGVHSSLYITHHGLAINCDTDLTW--------FNHI--------TPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHF 213 (235)
Q Consensus 150 a~iG~~~~~~vt~hG~alNv~~dl~~--------f~~i--------~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f 213 (235)
||+|+++++++++||++||+++|++. |..+ .+||+.+.+||||+++++.++++++++++++++|
T Consensus 163 ~G~Aqr~~~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~~~~VtsL~~~l~~~~~~~~v~~~l~~~f 242 (288)
T 2p0l_A 163 AGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLISL 242 (288)
T ss_dssp EEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred EEEeEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccchhheeeHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999987 6554 4589988999999998888899999999999999
Q ss_pred HHhhccc
Q psy6495 214 ESVFECE 220 (235)
Q Consensus 214 ~~~f~~~ 220 (235)
.+.|+.+
T Consensus 243 ~~~~~~t 249 (288)
T 2p0l_A 243 KQVGFND 249 (288)
T ss_dssp HHHTCCE
T ss_pred HHhcCCC
Confidence 9999973
No 4
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=100.00 E-value=8.5e-45 Score=322.37 Aligned_cols=214 Identities=14% Similarity=0.063 Sum_probs=182.6
Q ss_pred eeEEEEcCC----CCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccC--cccccchhhHhhhccCCCcE
Q psy6495 4 QVQLVRLGV----VSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIR--SLKEYDENLELKLNKLGADF 77 (235)
Q Consensus 4 ~~~~~~lg~----~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~--~~~~~~~~~~~~l~~~gi~v 77 (235)
.+++++.+. .++...|++|+.+++.+..+ ..++ +|+||+|+|+||+|++ | +++.+++.++|++.||+|
T Consensus 14 ~~~~i~~~~~~~~~d~~~nlA~de~Ll~~~~~g---~~~~--~l~l~~~~p~vtlG~~~~q-~~~~e~~~~~~~~~gi~v 87 (288)
T 2p5i_A 14 PWRFLDHTSFGPTFQALQSFAYDDTLCTSIGKS---QSPP--TLRAWVHHNTVVLGIQDSR-LPQIKAGIEALKGFQHDV 87 (288)
T ss_dssp CCEEEEESSCCTTSCHHHHHHHHHHHHHHHTTT---SSCC--EEEEECCSSEEEEEHHHHT-STTHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCcCCCCCHHHhHHHHHHHHHHhhcC---CCCC--EEEEecCCCEEEECCCcCC-CccHhhhHHHHHHcCCeE
Confidence 589999988 68999999999999998754 3456 9999999999999999 5 556667888999999999
Q ss_pred EEeccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEe-------eCCCceEEeCCCCcee
Q psy6495 78 YKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGL-------IPKYTGVFLDDEYKVC 150 (235)
Q Consensus 78 ~r~~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~-------~~~~~gv~v~~~rKIa 150 (235)
+||+||||+|||||||+ .|+++.....+.+++++++.++++++++|++ |||++++ .+|++||||++ +|||
T Consensus 88 vRR~sGGgaVyHdpG~l-~ysli~~~~~~~~v~~~y~~l~~~ii~~L~~-lGi~a~~~~~~~~~c~g~~dl~v~g-rKI~ 164 (288)
T 2p5i_A 88 IVRNSGGLAVVLDSGIL-NLSLVLKEEKGFSIDDGYELMYELICSMFQD-HREQIEAREIVGSYCPGSYDLSIDG-KKFA 164 (288)
T ss_dssp EEESSCCCCEEECTTEE-EEEEEEECCTTCCHHHHHHHHHHHHHHHTC----CCCEECCCTTSSSCCTTCEEETT-EEEE
T ss_pred EEEcCCCceEEECCCcE-EEEEEEcCCCCCCHHHHHHHHHHHHHHHHHH-cCCcEEEeccccCCCCCCccEEECC-EEEE
Confidence 99999999999999997 5666655455679999999999999999999 9999888 36899999999 9999
Q ss_pred eeceeeeCcEEEEeeeeecCCCccc--------cccc-cC-------CCCCCCCeeeeccccCCCCCHHHHHHHHHHHHH
Q psy6495 151 AIGVHSSLYITHHGLAINCDTDLTW--------FNHI-TP-------CGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFE 214 (235)
Q Consensus 151 ~iG~~~~~~vt~hG~alNv~~dl~~--------f~~i-~p-------cGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~ 214 (235)
|+|+++++++++||++||+++|++. |..+ +| ||+.+.+||||+++++.++++++++++++++|+
T Consensus 165 G~Aqr~~~~~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~~~ki~~~gi~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~ 244 (288)
T 2p5i_A 165 GISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMTLQ 244 (288)
T ss_dssp EEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred EEEEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhhcCccccccccccchhhceeHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999987 7653 44 588888999999988889999999999999999
Q ss_pred HhhcccccccCcH
Q psy6495 215 SVFECECSEVELD 227 (235)
Q Consensus 215 ~~f~~~~~~~~~~ 227 (235)
+. +.+..+.+++
T Consensus 245 ~~-~~~~~~~~lt 256 (288)
T 2p5i_A 245 QH-GASLLTESLS 256 (288)
T ss_dssp HT-TCCCEECCCC
T ss_pred Hh-CCCceecCCC
Confidence 85 3344444433
No 5
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=100.00 E-value=1.3e-44 Score=317.04 Aligned_cols=211 Identities=15% Similarity=0.151 Sum_probs=176.6
Q ss_pred CceeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEec
Q psy6495 2 TKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTN 81 (235)
Q Consensus 2 ~~~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~ 81 (235)
|+.+++++.+..++...+++|+.+++....+ . ++ +|+||+|+|+||+|++| +...+++.++|++.||+|+||+
T Consensus 1 m~~~~~i~~~~~~~~~nlA~ee~Ll~~~~~~---~-~~--~l~l~~~~p~v~lG~~q-~~~~e~~~~~~~~~gi~vvrR~ 73 (262)
T 2c8m_A 1 MEGRLLLLETPGNTRMSLAYDEAIYRSFQYG---D-KP--ILRFYRHDRSVIIGYFQ-VAEEEVDLDYMKKNGIMLARRY 73 (262)
T ss_dssp CEEEEECCCCTTCHHHHHHHHHHHHHHCCTT---S-CC--EEEEECCSSEEEECTTC-CHHHHSCHHHHHHTTCEEEECS
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHcccCC---C-Cc--EEEEEcCCCEEEECCCC-ChhHHhHHHHHHhcCCcEEEEC
Confidence 4568889999999999999999999987543 2 45 99999999999999999 6566788899999999999999
Q ss_pred cCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCC----------eeEeeCCCceEEeCCCCceee
Q psy6495 82 RGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSL----------NAGLIPKYTGVFLDDEYKVCA 151 (235)
Q Consensus 82 rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi----------~a~~~~~~~gv~v~~~rKIa~ 151 (235)
||||+||||||||++++|++.+ ..++++.++.++++++++|++ ||| .+++. +++||||++ +||||
T Consensus 74 sGGgavyhd~G~l~ys~i~~~~--~~~~~~~y~~l~~~ii~~l~~-lGi~~~~~~~~~~~a~~~-g~~dv~v~g-~Ki~G 148 (262)
T 2c8m_A 74 TGGGAVYHDLGDLNFSVVRSSD--DMDITSMFRTMNEAVVNSLRI-LGLDARPGELNDVSIPVN-KKTDIMAGE-KKIMG 148 (262)
T ss_dssp SCSCCEEECTTEEEEEEEEECS--SCCHHHHHHHHHHHHHHHHHH-TTCCCEECCBCCTTSSSS-BTTSEEETT-EEEEE
T ss_pred CCCceEEeCCCcEEEEEEEcCC--CCCHHHHHHHHHHHHHHHHHH-cCCCcccccccCCcceEC-CcCcEEECC-eEEEE
Confidence 9999999999999666666654 358887778999999999999 999 67776 599999999 99999
Q ss_pred eceeeeCcEEEEeeeeecCCCccccc---cccCCCCCCCC-------eeeeccccCCCCCHHHHHHHHHHHHHHhhcccc
Q psy6495 152 IGVHSSLYITHHGLAINCDTDLTWFN---HITPCGIKDKQ-------VTSLSKHLSKDITVDTVVPLFKKHFESVFECEC 221 (235)
Q Consensus 152 iG~~~~~~vt~hG~alNv~~dl~~f~---~i~pcGl~~~~-------vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~ 221 (235)
+|+++++++++||++||+++|++.|. .+.|||+.++. ||||++++ +++++++++++.++|.+.|+.+.
T Consensus 149 ~aqr~~~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~--~~~~~~v~~~l~~~~~~~~~~~~ 226 (262)
T 2c8m_A 149 AAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV--DVSIDEVRNALIRGFSETLHIDF 226 (262)
T ss_dssp EEEEEETTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS--CCCHHHHHHHHHHHHHHHHTCEE
T ss_pred eeeEEeCCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc--CCCHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999998775 44579998866 99999965 89999999999999999998766
Q ss_pred cccCc
Q psy6495 222 SEVEL 226 (235)
Q Consensus 222 ~~~~~ 226 (235)
...++
T Consensus 227 ~~~~l 231 (262)
T 2c8m_A 227 REDTI 231 (262)
T ss_dssp EECCC
T ss_pred eecCC
Confidence 54443
No 6
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=100.00 E-value=2.7e-42 Score=312.91 Aligned_cols=202 Identities=19% Similarity=0.219 Sum_probs=177.6
Q ss_pred eEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEeccCC
Q psy6495 5 VQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGG 84 (235)
Q Consensus 5 ~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~rGG 84 (235)
+..+-.+..+-...+|+++.+++.... .++ +|+||+|||+||+|++| +.+.+++.++|++.||+|+||+|||
T Consensus 13 ~~~~~~~~~d~~~nlAlee~Ll~~~~~-----~~~--~L~l~~~~p~v~iG~~q-~~~~ev~~~~~~~~gi~vvRR~sGG 84 (341)
T 1vqz_A 13 MKYIINHSNDTAFNIALEEYAFKHLLD-----EDQ--IFLLWINKPSIIVGRHQ-NTIEEINRDYVRENGIEVVRRISGG 84 (341)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHCTT-----CSE--EEEEECCSSEEEECTTC-CGGGTBCHHHHHHHTCEEEECSSCS
T ss_pred eeEEeCCCCCHHHHHHHHHHHHHhcCC-----CCC--EEEEEcCCCEEEECCCC-ChhhhhCHHHHHHcCCcEEEECCCC
Confidence 455566777877889999999987642 335 99999999999999999 6667789999999999999999999
Q ss_pred ceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcEEEEe
Q psy6495 85 LITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHG 164 (235)
Q Consensus 85 g~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt~hG 164 (235)
|+|||||||+ .|+++.++....++ + ++.++++++++|++ |||+|++. +++||||++ +||||+|+++++++++||
T Consensus 85 gaVyHd~G~l-~ys~i~~~~~~~~~-~-y~~l~~~ii~aL~~-lGi~a~~~-gr~Di~v~g-rKIsG~Aqr~~~~~~lhh 158 (341)
T 1vqz_A 85 GAVYHDLNNL-NYTIISKEDENKAF-D-FKSFSTPVINTLAQ-LGVKAEFT-GRNDLEIDG-KKFCGNAQAYINGRIMHH 158 (341)
T ss_dssp CCEEECTTEE-EEEEEEECCTTCCC-S-HHHHHHHHHHHHHH-TTCCEEEE-TTTEEEETT-EEEEEEEEEEETTEEEEE
T ss_pred CeEEECCCce-EEEEEEcCcccCCc-c-HHHHHHHHHHHHHH-cCCeEEEC-CCCCEEEeC-EEEEEEEEEEECCEEEEE
Confidence 9999999997 78877766533355 4 58899999999999 99999998 499999999 999999999999999999
Q ss_pred eeeecCCCccccc---cccCCCCCCCC-------eeeeccccCCCCCHHHHHHHHHHHHHHhhccc
Q psy6495 165 LAINCDTDLTWFN---HITPCGIKDKQ-------VTSLSKHLSKDITVDTVVPLFKKHFESVFECE 220 (235)
Q Consensus 165 ~alNv~~dl~~f~---~i~pcGl~~~~-------vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~ 220 (235)
++||+++|++.|. .+.|||+.++. ||||+++++.+++++++++++.++|.+.|+..
T Consensus 159 gtllvd~Dl~~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~~~~ 224 (341)
T 1vqz_A 159 GCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEM 224 (341)
T ss_dssp EEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTC
T ss_pred EEEEecCCHHHHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 9999999999876 55699997754 99999988888999999999999999999876
No 7
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=100.00 E-value=4.8e-41 Score=304.26 Aligned_cols=205 Identities=14% Similarity=0.166 Sum_probs=176.1
Q ss_pred eeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEeccC
Q psy6495 4 QVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (235)
Q Consensus 4 ~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (235)
++++++.+..+-...|++++.+++.... .++ +|+||+|+|+||+|++| +.+.+++.++|++.||+|+||.||
T Consensus 2 ~~r~i~~~~~d~~~nlA~ee~Ll~~~~~-----~~~--~l~l~~~~p~v~iG~~q-~~~~e~~~~~~~~~gi~vvRR~sG 73 (337)
T 3a7r_A 2 TLRLLISDSYDPWFNLAVEECIFRQMPA-----TQR--VLFLWRNADTVVIGRAQ-NPWKECNTRRMEEDNVRLARRSSG 73 (337)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHCCT-----TCE--EEEEECCSSEEEECTTC-CHHHHSCHHHHHHTTCEEEECSSC
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHhcCC-----CCc--EEEEEeCCCEEEECCCC-ChhHhhCHHHHHHcCCeEEEEcCC
Confidence 5788888888888889999999987643 235 99999999999999999 666678899999999999999999
Q ss_pred CceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeC--CC-CceeeeceeeeCcE
Q psy6495 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLD--DE-YKVCAIGVHSSLYI 160 (235)
Q Consensus 84 Gg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~--~~-rKIa~iG~~~~~~v 160 (235)
||+|||||||| .|+++.++.. .+ | +.++++++++|++ |||+|++.+ ++||||+ ++ +||||+|+++++++
T Consensus 74 GgaVyHd~G~l-~ys~i~~~~~-~~---y-~~l~~~ii~~L~~-lGi~a~~~g-~~di~v~~~~g~rKIsG~Aqr~~~~~ 145 (337)
T 3a7r_A 74 GGAVFHDLGNT-CFTFMAGKPE-YD---K-TISTSIVLNALNA-LGVSAEASG-RNDLVVKTVEGDRKVSGSAYRETKDR 145 (337)
T ss_dssp SCCEEECTTEE-EEEEEEETTT-CC---H-HHHHHHHHHHHHH-TTCCEEEET-TTEEEECCTTSCEEEEEEEEEECSSE
T ss_pred CccEEECCCcE-EEEEEECCcc-cC---H-HHHHHHHHHHHHH-cCCeEEECC-CCcEEEEeCCCceEEEEEEEEEECCE
Confidence 99999999999 8888876653 33 4 6799999999999 999999984 9999994 44 89999999999999
Q ss_pred EEEeeeeecCCCccc---cccccCCCCCCC-------CeeeeccccCCCCCHHHHHHHHHHHHHHhhcccccccC
Q psy6495 161 THHGLAINCDTDLTW---FNHITPCGIKDK-------QVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVE 225 (235)
Q Consensus 161 t~hG~alNv~~dl~~---f~~i~pcGl~~~-------~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~~~~~~~ 225 (235)
++||++||+++|++. |..+.|||+.++ +||||+++++ .+++++++++++++|.+.|+.+.....
T Consensus 146 ~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~-~~~~~~v~~~l~~~f~~~~~~~~~~~~ 219 (337)
T 3a7r_A 146 GFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLP-GITHEQVCEAITEAFFAHYGERVEAEI 219 (337)
T ss_dssp EEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCT-TCCHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred EEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCC-CCCHHHHHHHHHHHHHHHcCCCCceec
Confidence 999999999999875 457789998765 4688887654 599999999999999999997654333
No 8
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=100.00 E-value=6.2e-39 Score=291.48 Aligned_cols=202 Identities=14% Similarity=0.213 Sum_probs=169.4
Q ss_pred eeEEEEcCCCCHHHHHHHHHHHHHHHHhccCCCCCCccEEEEEEeCCeEEEccCcccccchhhHhhhccCCCcEEEeccC
Q psy6495 4 QVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRG 83 (235)
Q Consensus 4 ~~~~~~lg~~~y~~~~~~q~~l~~~~~~~~~~~~~~~~~lll~eh~pv~TiGr~~~~~~~~~~~~~l~~~gi~v~r~~rG 83 (235)
.-+++..+..+-...|++++.+++.... ..++ +|+||+|+|+||+|++| +.+.+++.++|++.||+|+||+||
T Consensus 4 ~~~~i~~~~~d~~~nlAlee~Ll~~~~~----~~~~--~l~l~~~~p~v~iG~~q-~~~~e~~~~~~~~~gi~vvRR~sG 76 (347)
T 2e5a_A 4 SGLILQSISNDVYHNLAVEDWIHDHMNL----EGKP--VLFLWRNSPTVVIGRHQ-NPWQECNLNLMREEGVKLARRRSG 76 (347)
T ss_dssp -CEEEEESCCCHHHHHHHHHHHHHHCCC----TTCC--EEEEECCSSEEEECTTC-CHHHHSCHHHHHTTTCEEEECSSC
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHhccc----CCCC--EEEEEcCCCEEEECCCC-CchhhhCHHHHHHCCCeEEEECCC
Confidence 3466777777878889999999988643 2346 99999999999999999 666678899999999999999999
Q ss_pred CceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcC--CeeEeeCCCceEEeCCCCceeeeceeeeCcEE
Q psy6495 84 GLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFS--LNAGLIPKYTGVFLDDEYKVCAIGVHSSLYIT 161 (235)
Q Consensus 84 Gg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~G--i~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt 161 (235)
||+||||||| +.|+++..+.. .+. ..++++++++|++ +| |+|+.. +++||||++.+||||+|++++++++
T Consensus 77 GgaVyHd~G~-l~ys~i~~~~~-~~~----~~~~~~ii~~L~~-lG~~i~a~~~-g~~di~v~g~~KIsG~Aq~~~~~~~ 148 (347)
T 2e5a_A 77 GGTVYHDMGN-INLTFFTTKKK-YDR----MENLKLVVRALKA-VHPHLDVQAT-KRFDLLLDGQFKISGTASKIGRNAA 148 (347)
T ss_dssp SCCEEECTTE-EEEEEEECGGG-CCH----HHHHHHHHHHHHH-HSTTCCEEEC-TTSCEEETTTEEEECEEEEECSSCE
T ss_pred CCcEEECCCc-EEEEEEecccc-CCH----HHHHHHHHHHHHH-hCCceEEEEC-CCCcEEECCCcEEEEEeEEeeCCeE
Confidence 9999999999 57888766542 342 3568999999999 99 999988 4999999854899999999999999
Q ss_pred EEeeeeecCCCcc---ccccccCCCCCCCCeeeecc------ccCCCCCHHHHHHHHHHHHHHhhccc
Q psy6495 162 HHGLAINCDTDLT---WFNHITPCGIKDKQVTSLSK------HLSKDITVDTVVPLFKKHFESVFECE 220 (235)
Q Consensus 162 ~hG~alNv~~dl~---~f~~i~pcGl~~~~vtSl~~------~l~~~~~~~~v~~~l~~~f~~~f~~~ 220 (235)
+||.+||+++|++ .+..+.|||+.++.++|+++ ++++++++++++++++++|.+.|+.+
T Consensus 149 lhhgtll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f~~~~~~~ 216 (347)
T 2e5a_A 149 YHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQID 216 (347)
T ss_dssp EEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 9999999999975 45666799998876666553 13467999999999999999999865
No 9
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=99.05 E-value=2.8e-09 Score=91.30 Aligned_cols=130 Identities=18% Similarity=0.105 Sum_probs=90.2
Q ss_pred eccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCc
Q psy6495 80 TNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLY 159 (235)
Q Consensus 80 ~~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~ 159 (235)
|-|.|..++-.||+|.+..++..+ .......+--...-+++++|++.+|+++..+. +||||+++ +|||||=+.....
T Consensus 38 RGR~Gr~W~Sp~G~l~~S~~l~p~-~~~~~~~lsl~~~lAv~~al~~~~~~~~~iKW-PNDI~~~g-kKl~GIL~E~~~~ 114 (233)
T 2eay_A 38 RGRLGRKWLSQEGGLYFSFLLNPK-EFENLLQLPLVLGLSVSEALEEITEIPFSLKW-PNDVYFQE-KKVSGVLCELSKD 114 (233)
T ss_dssp -----------CCEEEEEEEECTT-TCCCTTHHHHHHHHHHHHHHHHHHCCCCEEET-TTEEEETT-EEEEEEEEEEETT
T ss_pred CCCCCCeeeCCCCCcEEEEEEcCC-CHHHHHHHHHHHHHHHHHHHHHhcCCCccEeC-cceEEECC-eEEEEEEEEeecC
Confidence 346788888889988888888665 22222222222334889999993399999999 99999999 9999998876544
Q ss_pred EEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 160 ITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 160 vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
...-|+.||++. +. .|..++ ...|||..+.+.+++.+++...++++|.+.+..
T Consensus 115 ~~ViGIGiNv~~--~~----~p~~~~-~~atsL~~~~~~~~~r~~ll~~ll~~l~~~~~~ 167 (233)
T 2eay_A 115 KLIVGIGINVNQ--RE----IPEEIK-DRATTLYEITGKDWDRKEVLLKVLKRISENLKK 167 (233)
T ss_dssp EEEEEEEEECSC--CC----CCTTTT-TTBCCHHHHHSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEccc--cc----Ccchhh-hhhhhhHHhHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 448899999997 22 244443 369999987888999999999999999988754
No 10
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=99.03 E-value=1.8e-09 Score=92.70 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=95.8
Q ss_pred ccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcE
Q psy6495 81 NRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYI 160 (235)
Q Consensus 81 ~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~v 160 (235)
-|.|..++-.||+|.+..++..+........+.-...-++.++|++ +|+++..+. +|||++++ +|||||=+......
T Consensus 47 GR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~~l~l~~alAv~~al~~-~~~~~~iKW-PNDi~~~g-kKl~GIL~E~~~~~ 123 (235)
T 2dxu_A 47 GALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKE-FSIDGRIKW-PNDVLVNY-KKIAGVLVEGKGDK 123 (235)
T ss_dssp CGGGCBCCCCTTSEEEEEEECCCSCGGGGGGHHHHHHHHHHHHHHH-TTCCCEEET-TTEEEETT-EEEEEEEEEECSSC
T ss_pred CCCcCcccCCCCCeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeeeeC-CCEEEECC-EEEEEEEEeecCCE
Confidence 3667788888898988888865432111222222223489999999 899999999 99999999 99999988875566
Q ss_pred EEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhc
Q psy6495 161 THHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 218 (235)
Q Consensus 161 t~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 218 (235)
..-|+.||++.+ | |.. .|||..+.+.+++.+++...++++|.+.+.
T Consensus 124 vViGiGiNv~~~---~----p~~-----atsL~~~~~~~~~r~~ll~~ll~~l~~~~~ 169 (235)
T 2dxu_A 124 IVLGIGLNVNNK---V----PNG-----ATSMKLELGSEVPLLSVFRSLITNLDRLYL 169 (235)
T ss_dssp EEEEEEECSSSC---C----CTT-----BCCHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCC---C----CCc-----hhhHHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 778999999986 2 221 899988888899999999999999998775
No 11
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=98.98 E-value=7e-09 Score=92.93 Aligned_cols=131 Identities=16% Similarity=0.129 Sum_probs=91.4
Q ss_pred ccCCceEEEcCC-CeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhc-CCeeEeeCCCceEEeCCCCceeeeceeeeC
Q psy6495 81 NRGGLITFHGPG-QLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEF-SLNAGLIPKYTGVFLDDEYKVCAIGVHSSL 158 (235)
Q Consensus 81 ~rGGg~tyHgpG-QLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~-Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~ 158 (235)
-|.|..++-.|| +|.+..++..+........+.-...-+|+++|++ + |+++..+. +||||+++ +|||||=+....
T Consensus 121 GR~GR~W~Sp~G~~L~~S~~l~p~~~~~~~~~lsl~~avAv~~al~~-~~~~~~~iKW-PNDI~~~g-kKl~GIL~E~~~ 197 (323)
T 3rkx_A 121 GRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQH-FSQDEVKVKW-PNDIYIDN-GKVCGFLTEMVA 197 (323)
T ss_dssp ---------CTTCEEEEEEEECCCCCTTSGGGHHHHHHHHHHHHHHT-TCSSCEEEET-TTEEEETT-EEEEEEEEEEEE
T ss_pred CCCCCeeeCCCCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHH-hcCCceEEeC-CCeEEECC-EEEEEEEeEeee
Confidence 377888888889 7888888865432222222222223488999999 6 89999999 99999999 999999776432
Q ss_pred ---c--EEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 159 ---Y--ITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 159 ---~--vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
. ...-|+.|||+.+.+.| |..++. ..|||..+.+.+++.+++...++++|.+.+..
T Consensus 198 ~~~~~~~vViGIGiNv~~~~~~~----p~~l~~-~atsL~~~~g~~~~r~~ll~~ll~~l~~~~~~ 258 (323)
T 3rkx_A 198 NNDGIEAIICGIGINLTQQLENF----DESIRH-RATSIQLHDKNKLDRYQFLERLLQEIEKRYNQ 258 (323)
T ss_dssp CSSSEEEEEEEEEEECSCCGGGS----CTTTGG-GBCCSGGGCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEEEEecCCcccC----CcccCc-ceeeHhhhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 35579999999864333 555543 69999988889999999999999999987753
No 12
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=98.83 E-value=2.7e-08 Score=85.31 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=99.3
Q ss_pred eccCCceEEEcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhc-CCeeEeeCCCceEEeCCC---Cceeeecee
Q psy6495 80 TNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEF-SLNAGLIPKYTGVFLDDE---YKVCAIGVH 155 (235)
Q Consensus 80 ~~rGGg~tyHgpGQLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~-Gi~a~~~~~~~gv~v~~~---rKIa~iG~~ 155 (235)
|-|.|..++-.||+|.+..+++...... ..+--...-++.++|++ + |+++..+. +||||++++ +|||||=+.
T Consensus 38 RGR~Gr~W~Sp~G~l~~S~~l~p~~~~~--~~l~l~~~lAv~~al~~-~~~~~~~iKW-PNDi~~~g~~~~kKl~GIL~E 113 (237)
T 2ej9_A 38 KGRWGRVWYSDEGGLYFSMVLDSKLYNP--KVINLLVPICIIEVLKN-YVDKELGLKF-PNDIMVKVNDNYKKLGGILTE 113 (237)
T ss_dssp BCGGGCBCCCCTTSEEEEEEEETTSSCH--HHHHHHHHHHHHHHHTT-TCCSCEEEET-TTEEEEEETTEEEEEEEEEEE
T ss_pred CCCCCCeeeCCCCCeEEEeEEccccCCH--HHHHHHHHHHHHHHHHH-hhCCCcceeC-CCEEEECCCcCccEeeEEEEe
Confidence 3466888888899999999997622222 22222223488999999 6 99999999 999999874 799999887
Q ss_pred eeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 156 SSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 156 ~~~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
.......-|+.||++.+ .|..+. ...|||..+.+.+++.+++...++++|.+.+..
T Consensus 114 ~~~~~vViGiGiNv~~~-------~p~~l~-~~atsL~~~~~~~~~r~~ll~~ll~~l~~~~~~ 169 (237)
T 2ej9_A 114 LTDDYMIIGIGINVNNQ-------IRNEIR-EIAISLKEITGKELDKVEILSNFLKTFESYLEK 169 (237)
T ss_dssp ECSSEEEEEEEECSSSC-------CCGGGG-GTBCCHHHHHSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEEecCCC-------Ccchhh-hhhccHhHhHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 76667789999999986 233443 368999988888999999999999999988853
No 13
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=98.82 E-value=4e-08 Score=85.90 Aligned_cols=128 Identities=11% Similarity=0.059 Sum_probs=94.9
Q ss_pred ccCCceEEEcCC-CeEEEEeeecCCCCC-CHHHHHHHHHHHHHHHHh---hhcCCeeEeeCCCceEEeCCCCceeeecee
Q psy6495 81 NRGGLITFHGPG-QLVAYPIINLKHFTP-SIKWFVQSIEQTVIQLCK---QEFSLNAGLIPKYTGVFLDDEYKVCAIGVH 155 (235)
Q Consensus 81 ~rGGg~tyHgpG-QLv~y~il~l~~~~~-~~~~~~~~le~~vi~~L~---~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~ 155 (235)
-|.|..++-.|| +|.+..+++.+.... ....+--...-++.++|+ +..|+++..+. +||||+++ +|||||=+.
T Consensus 72 GR~GR~W~Sp~G~~L~~S~~l~~~~~~~~~~~~lsl~~~lAv~~aL~~~~~~~~~~~~iKW-PNDI~~~g-kKl~GIL~E 149 (270)
T 3rux_A 72 GRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVPPAETGLKW-PNDVLARG-GKLAGILAE 149 (270)
T ss_dssp CGGGCEECCCTTSEEEEEEEEECTTSCGGGTHHHHHHHHHHHHHHHGGGSSSCCSSCEEET-TTEEEETT-EEEEEEEEE
T ss_pred CCCCCeeeCCCCCCeEEEEEEccCCCChHHHHHHHHHHHHHHHHHHHHhcccCCCceEEEC-CCeEEECC-EEEEEEEEE
Confidence 377788888889 888888888753222 122222222348899998 62389999999 99999999 999999887
Q ss_pred eeCcEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 156 SSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 156 ~~~~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
.......-|+.|||+..-..| +....|||..+.+.. +.+++...++++|.+.+..
T Consensus 150 ~~~~~vViGIGiNv~~~~~~~--------~~~~atSL~~~~~~~-~r~~ll~~ll~~l~~~~~~ 204 (270)
T 3rux_A 150 VAQPFVVLGVGLNVTQAPEEV--------DPDATSLLDLGVAAP-DRNRIASRLLRELEARIIQ 204 (270)
T ss_dssp EETTEEEEEEEEESSCCHHHH--------CTTBCCTGGGTCSSC-CHHHHHHHHHHHHHHHHHH
T ss_pred eeCCeEEEEEEEeccCCcccc--------CchhhccHHHhcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 655667789999999863222 124689998865544 9999999999999988753
No 14
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=98.80 E-value=8.4e-08 Score=82.05 Aligned_cols=124 Identities=11% Similarity=0.014 Sum_probs=90.3
Q ss_pred CCceEEEcCC-CeEEEEeeecCCCCC--CHHHHHHHHHHHHHHHHhhhcCC-e--eEeeCCCceEEeCCCCceeeeceee
Q psy6495 83 GGLITFHGPG-QLVAYPIINLKHFTP--SIKWFVQSIEQTVIQLCKQEFSL-N--AGLIPKYTGVFLDDEYKVCAIGVHS 156 (235)
Q Consensus 83 GGg~tyHgpG-QLv~y~il~l~~~~~--~~~~~~~~le~~vi~~L~~~~Gi-~--a~~~~~~~gv~v~~~rKIa~iG~~~ 156 (235)
.|-+++-.|| +|.+..++..+.... ..-.++.. -++.++|++ ++. + ...+. +||||+++ ||||||=+..
T Consensus 37 ~g~vv~A~~g~~L~~S~~l~~~~~~~~~~~lsl~~a--lAv~~aL~~-~~~~~~~~~iKW-PNDI~~~g-kKl~GIL~E~ 111 (235)
T 3bfm_A 37 AGLVVYELGTDVLRAALVLAPEVPLAKAMAMLPVCG--VGFQNALGA-LAPPEVAVHLDW-NGALRING-ARCGRLRIAA 111 (235)
T ss_dssp TTEEEEEECSSEEEEEEEECCSSCHHHHTTHHHHHH--HHHHHHHHH-HSCTTCCEEECT-TSEEEETT-EEEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEEecCCCCHHHHHHHHHHHH--HHHHHHHHH-hcCCCcceEecC-CCeEEECC-eEEEEEEEEe
Confidence 4556666788 687888876542100 11123333 378999999 654 4 88998 99999999 9999998765
Q ss_pred eC-------cEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 157 SL-------YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 157 ~~-------~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
.. ....-|+.||++... |.++. ...|||..+.+..++.+++...++++|.+.+..
T Consensus 112 ~~~~~~~~~~~vViGIGiNv~~~~-------~~~~~-~~atsL~~~~~~~~~r~~ll~~ll~~l~~~~~~ 173 (235)
T 3bfm_A 112 STDDPDTQPDWLVVGLDLPLWPEG-------DGGET-PDETALYAEGCADVAAPRLLESWARHCLHWINR 173 (235)
T ss_dssp SCCCTTSCCSCEEEEEEEESSCCC-------SSCCC-CCSCCGGGTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eccCCCCCccEEEEEEEEEcCCCC-------ccccc-ccccchhHhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 32 256789999999762 12332 368999888888899999999999999988764
No 15
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=98.77 E-value=9.6e-08 Score=85.23 Aligned_cols=128 Identities=14% Similarity=0.111 Sum_probs=85.4
Q ss_pred cCCceEEEcCC-CeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhhcCC-eeEeeCCCceEEeCCCCceeeeceeeeC-
Q psy6495 82 RGGLITFHGPG-QLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSL-NAGLIPKYTGVFLDDEYKVCAIGVHSSL- 158 (235)
Q Consensus 82 rGGg~tyHgpG-QLv~y~il~l~~~~~~~~~~~~~le~~vi~~L~~~~Gi-~a~~~~~~~gv~v~~~rKIa~iG~~~~~- 158 (235)
|.|..++-.|| +|.+..++..+........+--...-+++++|.+ +|+ ++..+. +||||+++ +|||||=+....
T Consensus 118 R~gr~W~Sp~g~~l~~S~~l~~~~~~~~~~~l~l~~~~av~~al~~-~~~~~~~iKW-PNDi~~~g-~Kl~GIL~E~~~~ 194 (321)
T 1bia_A 118 RRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRK-LGADKVRVKW-PNDLYLQD-RKLAGILVELTGK 194 (321)
T ss_dssp -------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHHHHHHHHHH-TTCTTCEEET-TTEEEETT-EEEEEEEEEEEC-
T ss_pred CCCCcccCCCCCCEEEEEEEccCCChHHHhhHHHHHHHHHHHHHHH-hCCCCccEeC-cceeeECC-eeEEEEEEEeeec
Confidence 66778888889 7888888876532223332222233489999999 998 599999 99999999 999999776532
Q ss_pred ----cEEEEeeeeecCCCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhcc
Q psy6495 159 ----YITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFEC 219 (235)
Q Consensus 159 ----~vt~hG~alNv~~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~~ 219 (235)
....-|+.|||+.+. .| |..+. ...|||.. .+..++.+++...++++|.+.+..
T Consensus 195 ~~~~~~~viGiGiNv~~~~-~~----~~~~~-~~atsL~~-~~~~~~r~~ll~~ll~~l~~~~~~ 252 (321)
T 1bia_A 195 TGDAAQIVIGAGINMAMRR-VE----ESVVN-QGWITLQE-AGINLDRNTLAAMLIRELRAALEL 252 (321)
T ss_dssp ---CEEEEEEEEEECCC-----------------CCCTTT-TTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEEEecCCCc-cc----cchhc-cccccHHh-cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 246689999999864 22 22232 35899987 688899999999999999887753
No 16
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=96.32 E-value=0.034 Score=45.52 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=70.3
Q ss_pred eEEEEeeecCCCCCCHHH-H-HHH-HHHHHHHHHhhhcCCeeEeeCCCceEEeCCCCceeeeceeeeCcEEEEeeeeecC
Q psy6495 94 LVAYPIINLKHFTPSIKW-F-VQS-IEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCD 170 (235)
Q Consensus 94 Lv~y~il~l~~~~~~~~~-~-~~~-le~~vi~~L~~~~Gi~a~~~~~~~gv~v~~~rKIa~iG~~~~~~vt~hG~alNv~ 170 (235)
-.+-||+---.. .+++. | ..+ |-..+.+.|.+ +|++..++ -.|+|+++ ||++-.=...+---+.-++++||+
T Consensus 67 dmlhFIvEhFD~-~dl~~~y~rQRLlv~i~kE~L~~-~g~~~~R~--GDDLy~~~-~KLSVSIAt~s~vS~kIH~GiNV~ 141 (190)
T 2ddz_A 67 DMVHYILELFWH-PDILLASSLQKLLIARLVELLWN-YGIEASRR--GDDIYVNG-RKLSISIATVSPVSIKIHIGLNVK 141 (190)
T ss_dssp EEEEEEEEECSC-CCHHHHHHHHHHHHHHHHHHHHT-TTCCEEEE--TTEEEETT-EECEEEEEEECSSCEEEEEEEESC
T ss_pred cceEEEEeeCCC-ccHHHHHHHHHHHHHHHHHHHHH-cCCeeeec--cCeeeECC-CEEEEEEEecCcchheEEEEEeec
Confidence 456666633221 34442 2 222 34566778888 99999988 78999999 998643222333444466889999
Q ss_pred CCccccccccCCCCCCCCeeeeccccCCCCCHHHHHHHHHHHHHHhhc
Q psy6495 171 TDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFE 218 (235)
Q Consensus 171 ~dl~~f~~i~pcGl~~~~vtSl~~~l~~~~~~~~v~~~l~~~f~~~f~ 218 (235)
.+=. |. +....+|.+ +|. ++.++.+.+...+.+.+.
T Consensus 142 s~g~------P~---~V~aigL~d-lGi--~i~~~~~~i~~~y~~E~~ 177 (190)
T 2ddz_A 142 TVGV------PP---GVDAIGLEE-LGI--DPTEFMERSAKALVEEIE 177 (190)
T ss_dssp CSSC------CS---SSCBCCHHH-HTC--CHHHHHHHHHHHHHHHHH
T ss_pred ccCC------CC---CccccCHHH-cCC--CHHHHHHHHHHHHHHHHH
Confidence 8632 22 245667776 575 888999988888888775
No 17
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=21.29 E-value=1.9e+02 Score=25.00 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=30.4
Q ss_pred EEeeecCCC-CCCHHHHHHHHHHHHHHHHhhhcCCeeEee-CCCceEEe
Q psy6495 97 YPIINLKHF-TPSIKWFVQSIEQTVIQLCKQEFSLNAGLI-PKYTGVFL 143 (235)
Q Consensus 97 y~il~l~~~-~~~~~~~~~~le~~vi~~L~~~~Gi~a~~~-~~~~gv~v 143 (235)
..++||+.. +.++.+-+ .....+-+.|.+ +|+++..+ .|.-|+.|
T Consensus 136 ~lvfDLDP~~~~~f~~v~-~aA~~~r~~L~~-lGL~~f~KTSGgkGlHV 182 (303)
T 2iru_A 136 RLVFDLDPGEGVMMAQLA-EVARAVRDLLAD-IGLVTFPVTSGSKGLHL 182 (303)
T ss_dssp EEEEEEEECTTCCHHHHH-HHHHHHHHHHHT-TTCCCEEEECSSSCEEE
T ss_pred EEEEECCCCCCCCHHHHH-HHHHHHHHHHHH-cCCccceEccCCCeEEE
Confidence 567888754 35665433 344567889999 99997754 36777655
Done!