RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6495
(235 letters)
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus
thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Length = 237
Score = 252 bits (646), Expect = 2e-85
Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 10/226 (4%)
Query: 3 KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEY 62
+ + LG+V Y Q+ ++ N TLLLLEH V T+G ++ E
Sbjct: 21 MEFLVEDLGLVPYGEAWAYQKRVHREVVA-----GNRPPTLLLLEHPRVITLGRKATGEN 75
Query: 63 DENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQ 122
E + G + Y RGG +T+HGPGQLV YPI + ++ F++ IE+ +++
Sbjct: 76 LLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVR 132
Query: 123 LCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPC 182
+ + ++A P Y GV++ ++ K+CAIGV ++ HG A+N +TDL F I PC
Sbjct: 133 VAA-GYGISAYPTPGYAGVWVGED-KLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPC 190
Query: 183 GIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDE 228
G+K K VTSL K L + + ++ F VF E + E
Sbjct: 191 GLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVEGSVHE 236
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid,
acyltransferase, mycobacterium tuberculosis structural
proteomics project; HET: DKA; 1.08A {Mycobacterium
tuberculosis} SCOP: d.104.1.3
Length = 232
Score = 251 bits (642), Expect = 8e-85
Identities = 80/221 (36%), Positives = 109/221 (49%), Gaps = 17/221 (7%)
Query: 2 TKQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKE 61
+ + +LG V Y ++Q + + + TLLLLEH VYT G R+
Sbjct: 11 LSAIDVRQLGTVDYRTAWQLQRELADARV------AGGADTLLLLEHPAVYTAGRRTETH 64
Query: 62 YDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVI 121
G T+RGG IT+HGPGQLV YPII L + +V+ +E+++I
Sbjct: 65 E-------RPIDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAEPL-DVVNYVRRLEESLI 116
Query: 122 QLCKQEFSLNAGLIPKYTGVFLDD--EYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHI 179
Q+C + L+AG + +GV+L KV AIGV S T HG A+NCD DL F I
Sbjct: 117 QVCA-DLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAI 175
Query: 180 TPCGIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECE 220
PCGI D VTSLS L + +TVD V + +
Sbjct: 176 VPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV 216
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H,
structural genomics, structure initiative, PSI-2; 2.04A
{Streptococcus agalactiae} SCOP: d.104.1.3
Length = 288
Score = 42.3 bits (99), Expect = 6e-05
Identities = 29/223 (13%), Positives = 61/223 (27%), Gaps = 48/223 (21%)
Query: 42 TLLLLEHKPVYTIGI--RSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPI 99
L + +G+ R L + + ++ G + N GGL G L
Sbjct: 48 ILHIWPMTKTVILGMLDRELPHLELAKK-EIISRGYEPVVRNFGGLAVVADEGIL----- 101
Query: 100 INLKHFTPSIKWFVQSIEQTVIQLCK------QEFSLNAGLIPKYTGVFLDDEY------ 147
N P + SI + + +F + ++
Sbjct: 102 -NFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEV-ETSYCPGKFDLSING 159
Query: 148 -KVCAIGVHSSLYITHHGLAINCDTDLT--------WFNHITPCGIKDKQ---------- 188
K G + +G+A++ + + G+ D
Sbjct: 160 KKFA--G--LAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDP 215
Query: 189 --VTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEE 229
+ +LS L +TV+ V+ + V + + +
Sbjct: 216 EIMANLSDLLDCPMTVEDVIDRMLISLKQVG-FNDRLLMIRPD 257
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A
{Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A*
2aru_A* 2c7i_A 2ars_A* 3r07_A
Length = 262
Score = 39.3 bits (92), Expect = 6e-04
Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 31/226 (13%)
Query: 23 EHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDE-NLELKLNKLGADFYKTN 81
+ + S L H IG +E +L+ + K G +
Sbjct: 21 DEAI-----YRSFQYGDKPILRFYRHDRSVIIG-YFQVAEEEVDLD-YMKKNGIMLARRY 73
Query: 82 RGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGV 141
GG +H G L + ++ I +++ + V+ + L+A
Sbjct: 74 TGGGAVYHDLGDL-NFSVV-RSSDDMDITSMFRTMNEAVVNSLR-ILGLDARPGELNDVS 130
Query: 142 F--------LDDEYKVC-AIGVHSSLYITHHG-LAINCDTD-LTWFNHITPCGIKDK--- 187
+ E K+ A G H + ++ D D L+ + +DK
Sbjct: 131 IPVNKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAK 190
Query: 188 ----QVTSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEE 229
+V +++ + D+++D V + F + E + E+
Sbjct: 191 STRERVANVTDFV--DVSIDEVRNALIRGFSETLHIDFREDTITEK 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.003
Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 67/278 (24%)
Query: 1 MTKQVQLVRLGVVSYSNGIKIQEHY---VNKLKTLISKPSNHSGTLLLLEHKPVYTIGIR 57
++KQ ++V+ V ++ +Y ++ +KT +PS + + + + +Y +
Sbjct: 72 LSKQEEMVQKFVEE-----VLRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYN-DNQ 124
Query: 58 SLKEYDENLELKLNKLGADFYKTNRGGLITFHGPG-----QLVA-----YPIINLKHFTP 107
+Y+ + KL + + G + Y +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDF 182
Query: 108 SIKWF----VQSIEQTVIQ---LCKQ---------------EFSLNAGLIPKYTGVFLDD 145
I W S E + L Q + +++ + + +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSK 241
Query: 146 EYKVCAI---GVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVT-SLSKHLSKDIT 201
Y+ C + V ++ ++C LT T + KQVT LS + I+
Sbjct: 242 PYENCLLVLLNVQNAKAWNA--FNLSCKILLT-----T----RFKQVTDFLSAATTTHIS 290
Query: 202 VDTVVPLFKKH-----FESVFECECSEVELDEEIKHLN 234
+D +C +L E+ N
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTN 326
Score = 29.8 bits (66), Expect = 0.99
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 190 TSLSKHLSKDITVDTVVPLFKKHFESVFECECSEVEL-----DEEIKHL 233
T ++ KDI + +F+ F F+C+ + EEI H+
Sbjct: 11 TGEHQYQYKDI-----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid,
ATP-binding, cytoplasm, nucleotide-binding, transferase,
lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A*
3a7a_A* 1x2g_A*
Length = 337
Score = 36.4 bits (84), Expect = 0.005
Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 25/201 (12%)
Query: 42 TLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIIN 101
L L + IG + N ++ + + + GG FH G +
Sbjct: 33 VLFLWRNADTVVIGRAQNPWKECNTR-RMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAG 91
Query: 102 LKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPK--YTGVFLDDEYKVC----AIGVH 155
+ + + ++A + ++ + KV
Sbjct: 92 KPEY--DKTISTSIVLNAL-----NALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKD 144
Query: 156 SSLYITHHG-LAINCDTD-LTWFNHITPCGIKDKQVTSLSKH------LSKDITVDTVVP 207
HHG L +N D L + + + K +TS+ L IT + V
Sbjct: 145 RGF---HHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCE 201
Query: 208 LFKKHFESVFECECSEVELDE 228
+ F + + +
Sbjct: 202 AITEAFFAHYGERVEAEIISP 222
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin
synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE;
1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3
d.104.1.3
Length = 341
Score = 31.2 bits (71), Expect = 0.22
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 145 DEYKVC--AIGVHSSLYITHHGLAINCDTD-LTWFNHITPCGIKDK-------QVTSLSK 194
D K C A + + H L + D L ++ + K +VT++
Sbjct: 139 DGKKFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIIN 198
Query: 195 HLSKDITVDTVVPLFKKHFESVFECECSEVELDEE 229
L K ITV+ L ++ + + E +E EE
Sbjct: 199 ELPKKITVEKFRDLLLEYMKKEY-PEMTEYVFSEE 232
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast
collaboratory for structural genomics, structure
initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP:
d.58.58.1
Length = 85
Score = 26.4 bits (59), Expect = 2.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 215 SVFECECSEVELDE 228
SVFE E + E +
Sbjct: 31 SVFEGEVTLAEFER 44
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 27.2 bits (61), Expect = 5.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 64 ENLELKLNKLGAD 76
+L L KLGAD
Sbjct: 439 RDLVEDLVKLGAD 451
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan,
structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus} PDB: 3swg_A*
Length = 425
Score = 26.7 bits (60), Expect = 7.3
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 64 ENLELKLNKLGAD 76
E LE KL KLGAD
Sbjct: 406 EKLEEKLKKLGAD 418
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 26.8 bits (59), Expect = 7.8
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Query: 75 ADFYKTNRGGL-ITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAG 133
++ + L FHG + +YP N + + V + +S N
Sbjct: 202 VNWIVSKPFVLSANFHGGAVVASYPYDN-SLAHNECCEESLTPDDRVFKQLAHTYSDNHP 260
Query: 134 LIPKYTGVFLDDEYKVCAIGVHSSLYITHHG 164
++ G +D + I + Y G
Sbjct: 261 IM--RKGNNCNDSFSG-GITNGAHWYELSGG 288
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A
1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A*
1uae_A* 3kqj_A* 3kr6_A* ...
Length = 419
Score = 26.7 bits (60), Expect = 8.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 64 ENLELKLNKLGAD 76
E +E KL LGA+
Sbjct: 400 ERIEDKLRALGAN 412
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for
structural genomi infectious diseases, csgid, serine
peptidase S66; 1.95A {Bacillus anthracis}
Length = 331
Score = 26.4 bits (59), Expect = 9.4
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 80 TNRGGLITFHGP 91
+ GL+T+ GP
Sbjct: 124 YTKTGLVTYSGP 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.411
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,552,754
Number of extensions: 202118
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 20
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)