RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6495
(235 letters)
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 216
Score = 139 bits (352), Expect = 7e-42
Identities = 69/218 (31%), Positives = 90/218 (41%), Gaps = 13/218 (5%)
Query: 3 KQVQLVRLGVVSYSNGIKIQEHYVNKLKTLISKPSNHSGTLLLLEHKPVYTIGIRSLKEY 62
+ + +LG V Y ++Q + + + TLLLLEH VYT G R+
Sbjct: 10 SAIDVRQLGTVDYRTAWQLQRELADARV------AGGADTLLLLEHPAVYTAGRRTETHE 63
Query: 63 DENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQ 122
T+RGG IT+HGPGQLV YPII L + + + E +
Sbjct: 64 RPIDG-------TPVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQV 116
Query: 123 LCKQEFSLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPC 182
+ KV AIGV S T HG A+NCD DL F I PC
Sbjct: 117 CADLGLHAGRVDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPC 176
Query: 183 GIKDKQVTSLSKHLSKDITVDTVVPLFKKHFESVFECE 220
GI D VTSLS L + +TVD V + +
Sbjct: 177 GISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV 214
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 256
Score = 105 bits (263), Expect = 3e-28
Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 20/210 (9%)
Query: 36 PSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLV 95
L H IG + E + +L+ + K G + GG +H G L
Sbjct: 29 QYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDY-MKKNGIMLARRYTGGGAVYHDLGDLN 87
Query: 96 AYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVF--------LDDEY 147
+ + I +++ + V+ + L+A + E
Sbjct: 88 FSVVRSSDDM--DITSMFRTMNEAVVNSLRI-LGLDARPGELNDVSIPVNKKTDIMAGEK 144
Query: 148 KVCAIGVHSSLYITHHGLAINCDTDLTWFN---HITPCGIKDKQVTSLSKHLS-----KD 199
K+ A+ TDL + + +DK S + ++ D
Sbjct: 145 KIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFVD 204
Query: 200 ITVDTVVPLFKKHFESVFECECSEVELDEE 229
+++D V + F + E + E+
Sbjct: 205 VSIDEVRNALIRGFSETLHIDFREDTITEK 234
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 246
Score = 86.0 bits (212), Expect = 5e-21
Identities = 27/200 (13%), Positives = 60/200 (30%), Gaps = 21/200 (10%)
Query: 42 TLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIIN 101
L L + IG + N + + + + GG FH G +
Sbjct: 33 VLFLWRNADTVVIGRAQNPWKECNTRR-MEEDNVRLARRSSGGGAVFHDLGNTCFTFMAG 91
Query: 102 LKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVF--LDDEYKVCAIGVHSSLY 159
+ +I +++ ++A + V ++ + KV +
Sbjct: 92 KPEYDKTIST-------SIVLNALNALGVSAEASGRNDLVVKTVEGDRKVSGSAYRETKD 144
Query: 160 ITHHGLAINCDTDL---TWFNHITPCGIKDK-------QVTSLSKHLSKDITVDTVVPLF 209
H + + DL + + + K +VT+L++ L IT + V
Sbjct: 145 RGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELL-PGITHEQVCEAI 203
Query: 210 KKHFESVFECECSEVELDEE 229
+ F + + +
Sbjct: 204 TEAFFAHYGERVEAEIISPN 223
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
domain {Streptococcus pneumoniae [TaxId: 1313]}
Length = 241
Score = 83.6 bits (206), Expect = 4e-20
Identities = 37/208 (17%), Positives = 64/208 (30%), Gaps = 18/208 (8%)
Query: 32 LISKPSNHSGTLLLLEHKPVYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGP 91
+ LL +KP +G + N + + + G + + GG +H
Sbjct: 21 AFKHLLDEDQIFLLWINKPSIIVGRHQNTIEEINRDY-VRENGIEVVRRISGGGAVYHDL 79
Query: 92 GQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEYKVCA 151
L I + + +S VI Q + A + D K C
Sbjct: 80 NNLNYTIISKEDE---NKAFDFKSFSTPVINTLAQ-LGVKAEFTGRNDLEI--DGKKFCG 133
Query: 152 IGVHSSLYITHHGLAINCDTDLTWFN---HITPCGIKDKQVTS-------LSKHLSKDIT 201
H + D DL+ ++ + K V S + L K IT
Sbjct: 134 NAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKIT 193
Query: 202 VDTVVPLFKKHFESVFECECSEVELDEE 229
V+ L ++ + + E +E EE
Sbjct: 194 VEKFRDLLLEYMKKEYP-EMTEYVFSEE 220
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 83.2 bits (205), Expect = 9e-20
Identities = 28/213 (13%), Positives = 54/213 (25%), Gaps = 30/213 (14%)
Query: 42 TLLLLEHKPVYTIGIR--SLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPI 99
TL H +GI+ L + +E L D N GGL G L +
Sbjct: 38 TLRAWVHHNTVVLGIQDSRLPQIKAGIEA-LKGFQHDVIVRNSGGLAVVLDSGILNLSLV 96
Query: 100 INLKHFTPSIKWFVQSIEQTVIQLCKQE------FSLNAGLIPKYTGVFLDDEYKVCAIG 153
+ + SI + + + + + + + P + +D K I
Sbjct: 97 LK-EEKGFSIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSIDG-KKFAGIS 154
Query: 154 VH-SSLYITHHGLAINCDTDLT----WFNHITPCGIKDK------------QVTSLSKHL 196
+ + + + + SLS+ L
Sbjct: 155 QRRIRGGVAVQI-YLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELL 213
Query: 197 SKDITVDTVVPLFKKHFESVFECECSEVELDEE 229
+ V V+ + L +
Sbjct: 214 GQPHNVSDVLLKALMTLQQ-HGASLLTESLSAD 245
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus
agalactiae [TaxId: 1311]}
Length = 269
Score = 71.6 bits (175), Expect = 1e-15
Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 26/220 (11%)
Query: 35 KPSNHSGTLLLLEHKPVYTIGIRS--LKEYDENLELKLNKLGADFYKTNRGGLITFHGPG 92
SN L + +G+ L + + + G + N GGL G
Sbjct: 38 NRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKE-IISRGYEPVVRNFGGLAVVADEG 96
Query: 93 QLVAYPIINLKHFTP-SIKWFVQSIEQTVIQLCKQ-----EFSLNAGLIPKYTGVFLDDE 146
L +I SI + + + E +
Sbjct: 97 ILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEVETSYCPGKFDLSING 156
Query: 147 YKVCAIGVHSSLYITHHGLAINCDTDL----TWFNHITPCGIKDKQ------------VT 190
K + + ++ D + G+ D +
Sbjct: 157 KKFAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMA 216
Query: 191 SLSKHLSKDITVDTVVPLFKKHFESVFECECSEVELDEEI 230
+LS L +TV+ V+ + V + + + ++
Sbjct: 217 NLSDLLDCPMTVEDVIDRMLISLKQVGFND-RLLMIRPDL 255
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase
catalytic domain {Archaeon Pyrococcus horikoshii [TaxId:
53953]}
Length = 188
Score = 28.6 bits (63), Expect = 0.55
Identities = 14/131 (10%), Positives = 40/131 (30%), Gaps = 14/131 (10%)
Query: 88 FHGPGQLVAYPIINLKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPKYTGVFLDDEY 147
+ P + I+ + + + +EFS++ K+ L +
Sbjct: 53 WESPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEFSIDG--RIKWPNDVLVNYK 110
Query: 148 KVCAIGVHSSLYITHHGLAINCDTDLTWFNHITPCGIKDKQVTSLSKHLSKDITVDTVVP 207
+ + V G+ +N + + TS+ L ++ + +V
Sbjct: 111 AIAGVLVEGKGDKIVLGIGLNVNNKV------------PNGATSMKLELGSEVPLLSVFR 158
Query: 208 LFKKHFESVFE 218
+ + ++
Sbjct: 159 SLITNLDRLYL 169
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 27.5 bits (61), Expect = 0.77
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 102 LKHFTPSIKWFVQSIEQTVIQLCKQEFSLNAGLIPK-YTG 140
L+ F +K ++ T I L ++SL A LIPK Y G
Sbjct: 47 LRRF---LKLALK----TPIWLNPIDYSLLASLIPKGYPG 79
>d2noca1 d.230.6.1 (A:1-91) Putative periplasmic protein YahO
{Salmonella choleraesuis [TaxId: 28901]}
Length = 91
Score = 26.3 bits (58), Expect = 1.4
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 51 VYTIGIRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPII 100
+ T G S + E+L K ++ GAD L + ++ I
Sbjct: 43 ISTTGEMSPLDAREDLIKKADEKGADVVV-----LTSGQTENKIHGTADI 87
>d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate
8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus
[TaxId: 63363]}
Length = 263
Score = 25.6 bits (55), Expect = 5.1
Identities = 14/131 (10%), Positives = 28/131 (21%), Gaps = 3/131 (2%)
Query: 57 RSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFVQSI 116
+K E + + F K NR + +F G G + +K
Sbjct: 23 EEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIH 82
Query: 117 EQTVIQLCKQEF---SLNAGLIPKYTGVFLDDEYKVCAIGVHSSLYITHHGLAINCDTDL 173
E + + + A L + + + +
Sbjct: 83 ESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKF 142
Query: 174 TWFNHITPCGI 184
I
Sbjct: 143 GGAKEIYLTER 153
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 347
Score = 25.4 bits (55), Expect = 7.1
Identities = 10/74 (13%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 56 IRSLKEYDENLELKLNKLGADFYKTNRGGLITFHGPGQLVAYPIINLKHFTPSIKWFV-Q 114
+ L+ Y ++ ELK + Y L+ + + + L+ + ++
Sbjct: 167 LSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDH 226
Query: 115 SIEQTVIQLCKQEF 128
S ++ +I +++
Sbjct: 227 STQKPLIACVEKQL 240
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.411
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 875,452
Number of extensions: 39622
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 15
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)