BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6496
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14
pdb|3UI5|A Chain A, Crystal Structure Of Human Parvulin 14
pdb|3UI6|A Chain A, 0.89 A Resolution Crystal Structure Of Human Parvulin 14
In Complex With Oxidized Dtt
Length = 101
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 73/96 (76%), Positives = 87/96 (90%)
Query: 27 TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQ 86
AVKVRHILCEK K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ
Sbjct: 6 NAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQ 65
Query: 87 DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 66 EAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 101
>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE,
Hpar14
Length = 104
Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 73/96 (76%), Positives = 87/96 (90%)
Query: 27 TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQ 86
AVKVRHILCEK K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ
Sbjct: 9 NAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQ 68
Query: 87 DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 69 EAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 104
>pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14
Length = 96
Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 73/95 (76%), Positives = 87/95 (91%)
Query: 28 AVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQD 87
AVKVRHILCEK K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ+
Sbjct: 2 AVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQE 61
Query: 88 AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 62 AAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96
>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon
Cenarcheaum Symbiosum (Cspin)
Length = 97
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Query: 29 VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED--KARQGGDLGWMVRGSMVGEFQ 86
+K HIL +KQ + L E+LK+G KF ++A + S D A++ G LG+ RG MV F+
Sbjct: 10 IKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFE 69
Query: 87 DAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
DAAF+L + V+ PV K++FGYH+I
Sbjct: 70 DAAFRLQVGEVSEPV------KSEFGYHVI 93
>pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase
Length = 93
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 29 VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMVR-GSMVGEFQ 86
++ HIL + E +KLK G KF ++A +YS D A +GGDLGW + G M F
Sbjct: 5 IRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFS 64
Query: 87 DAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
AAFKL V++PV KT++GYHII
Sbjct: 65 KAAFKLKTGEVSDPV------KTQYGYHII 88
>pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
Cj1289 Are Two Structurally-Related Sura-Like Chaperones
In The Human Pathogen Campylobacter Jejuni
Length = 252
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 13/100 (13%)
Query: 29 VKVRHIL--CEKQSK-VLEALEKLKS---GVKFPEVASQYSED--KARQGGDLGWMVRGS 80
V+ +HIL EK++K ++ L+ LK KF E+A + S D QGG+LGW + +
Sbjct: 113 VQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQST 172
Query: 81 MVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120
MV F DAAF L T+ T P+KT FGYH+I+ E
Sbjct: 173 MVKPFTDAAFALKNGTI-----TTTPVKTNFGYHVILKEN 207
>pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
pdb|1JNT|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
Length = 92
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 33 HILCEKQSKVLEALEKLKSGVKFPEVASQYS-EDKARQGGDLGWMVRGSMVGEFQDAAFK 91
HIL +++ L+ LE++K+G F ++A ++S ++GGDLG +G MV F F
Sbjct: 8 HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFS 67
Query: 92 LPISTVNNPVYTEPPIKTKFGYHIIMV 118
P+ P++T+ FGYHII V
Sbjct: 68 CPVLEPTGPLHTQ------FGYHIIKV 88
>pdb|4G2P|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
pdb|4G2P|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
Length = 110
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 18/102 (17%)
Query: 27 TAVKVRHILC---------EKQSKVLEALEKLKSG-VKFPEVASQYSED--KARQGGDLG 74
T V RHIL + + K+ E +KSG F A +YS+D A QGGDLG
Sbjct: 7 TEVHARHILLKPSPIXNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLG 66
Query: 75 WMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
W F+DA KL ++ PV++ FG+H+I
Sbjct: 67 WATPDIFDPAFRDALTKLHKGQISAPVHSS------FGWHLI 102
>pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1
Length = 114
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 44 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 103
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 104 DS------GIHIIL 111
>pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IK8|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3JYJ|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3JYJ|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
Length = 123
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 53 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 112
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 113 DS------GIHIIL 120
>pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAC|B Chain B, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
Length = 123
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 53 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 112
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 113 DS------GIHIIL 120
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 97 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMAKPFEDASFALRTGEMSGPVFT 156
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 157 DS------GIHIIL 164
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 93 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 153 DS------GIHIIL 160
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 93 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 153 DS------GIHIIL 160
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 93 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 153 DS------GIHIIL 160
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 93 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 153 DS------GIHIIL 160
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 93 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 153 DS------GIHIIL 160
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 88 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 147
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 148 DS------GIHIIL 155
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 93 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 153 DS------GIHIIL 160
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 92 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 151
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 152 DS------GIHIIL 159
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 93 IQKIKSGEEDFESLASQFSDASSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 153 DS------GIHIIL 160
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 96 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 155
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 156 DS------GIHIIL 163
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 97 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 156
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 157 DS------GIHIIL 164
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 97 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 156
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 157 DS------GIHIIL 164
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG M F+DA+F L ++ PV+T
Sbjct: 91 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 150
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 151 DS------GIHIIL 158
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 46 LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
++K+KSG + F +ASQ+S+ A+ GDLG RG F+DA+F L ++ PV+T
Sbjct: 93 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQAQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
+ G HII+
Sbjct: 153 DS------GIHIIL 160
>pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|B Chain B, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|C Chain C, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
pdb|1M5Y|D Chain D, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
Length = 408
Score = 44.7 bits (104), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 22/104 (21%)
Query: 27 TAVKVRHIL-------CEKQSKVLEALEKLKSGVK-----FPEVASQYSED--KARQGGD 72
T V RHIL ++Q++V LE++ + +K F A ++S+D A QGGD
Sbjct: 263 TEVHARHILLKPSPIMTDEQARV--KLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGD 320
Query: 73 LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
LGW F+DA +L N P+ + FG+H+I
Sbjct: 321 LGWATPDIFDPAFRDALTRL------NKGQMSAPVHSSFGWHLI 358
>pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase
Length = 111
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 54 KFPEVASQYSED--KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKF 111
KF E+A + S D A++ G+LG++++G +F+ A FKL V+ V K+ F
Sbjct: 49 KFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVV------KSSF 102
Query: 112 GYHIIMVE 119
GYHII +
Sbjct: 103 GYHIIKAD 110
>pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans
Length = 177
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 46 LEKLKSG-VKFPEVASQYSEDKAR-QGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
LE++ SG VK E+A+ S+ + +GGDLG+ +G M F++AAF L + V+N
Sbjct: 107 LERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSN---- 162
Query: 104 EPPIKTKFGYHIIMVEG 120
I+T G HI+ G
Sbjct: 163 --IIETNSGVHILQRTG 177
>pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
Length = 139
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 34 ILCEKQSKVLEALEKLKSGV-----KFPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQD 87
IL + +E L+ ++ + F EVA++ S+ A++GGDLG RG M F++
Sbjct: 53 ILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEE 112
Query: 88 AAFKLPISTVNNPVYTEPPIKTKFGYHII 116
A + L + +++ V T+ G HII
Sbjct: 113 ATYALKVGDISDIVDTDS------GVHII 135
>pdb|2LJ4|A Chain A, Solution Structure Of The Tbpin1
Length = 115
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 47 EKLKSG-VKFPEVASQYSEDKA-RQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTE 104
+++ SG V F E ASQ S+ + GGDLG+ G M+ F+DA L I ++
Sbjct: 46 QRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSGEMMKPFEDAVRALKIGDIS------ 99
Query: 105 PPIKTKFGYHII 116
P ++T G HII
Sbjct: 100 PIVQTDSGLHII 111
>pdb|2KGJ|A Chain A, Solution Structure Of Parvulin Domain Of Ppid From
E.Coli
Length = 102
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 46 LEKLKSGVKFPEVASQYSED--KARQGGDLGWMVRGSMVGEFQDAAFK 91
L++L G F +A + S D AR GGD+GW+ ++ E ++A K
Sbjct: 23 LDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLK 70
>pdb|3GPK|A Chain A, Crystal Structure Of Ppic-Type Peptidyl-Prolyl Cis-Trans
Isomerase Domain At 1.55a Resolution.
pdb|3GPK|B Chain B, Crystal Structure Of Ppic-Type Peptidyl-Prolyl Cis-Trans
Isomerase Domain At 1.55a Resolution
Length = 112
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 46 LEKLKSGVKFPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTE 104
+E+LK G F A QYSE A GGDLGW+ + E A P
Sbjct: 33 VEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTA------ASXGPGQLA 86
Query: 105 PPIKTKFGYHIIMVEGKK 122
P++ + G+ I+ + K+
Sbjct: 87 GPVEIRGGFSILYLIDKR 104
>pdb|3S1S|A Chain A, Characterization And Crystal Structure Of The Type Iig
Restriction Endonuclease Bpusi
Length = 878
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 97 VNNPVY----TEPPIKTKFGYHIIMVEGKK 122
V NP Y T+P IK KF + II + G +
Sbjct: 404 VXNPPYVSGVTDPAIKRKFAHKIIQLTGNR 433
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 46 LEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPV 101
L +L V P + + +E + R G D+ VR ++ GEF A + VN V
Sbjct: 269 LFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEV 324
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 46 LEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPV 101
L +L V P + + +E + R G D+ VR ++ GEF A + VN V
Sbjct: 268 LFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEV 323
>pdb|1APS|A Chain A, Three-Dimensional Structure Of Acylphosphatase.
Refinement And Structure Analysis
Length = 98
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 62 YSEDKARQGGDLGWM---VRGSMVGEFQ 86
Y+ED+AR+ G +GW+ +G++ G+ Q
Sbjct: 25 YAEDEARKIGVVGWVKNTSKGTVTGQVQ 52
>pdb|1G4U|S Chain S, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
pdb|1G4W|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp
Length = 383
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 28 AVKVRHILCEKQSKVLEALEKLKSGVKFPEVAS 60
AVK H++ ++ V LEK+++G P+ S
Sbjct: 109 AVKKIHVIAKELKNVTAELEKIEAGAPMPQTMS 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,875,640
Number of Sequences: 62578
Number of extensions: 99267
Number of successful extensions: 298
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 41
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)