Query psy6496
Match_columns 122
No_of_seqs 120 out of 1101
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:36:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13616 Rotamase_3: PPIC-type 99.9 7.8E-27 1.7E-31 159.0 10.7 93 24-122 11-117 (117)
2 PRK15441 peptidyl-prolyl cis-t 99.9 9.3E-26 2E-30 148.3 11.1 89 27-121 3-92 (93)
3 KOG3258|consensus 99.9 1.9E-23 4.2E-28 139.7 10.3 100 23-122 34-133 (133)
4 PF00639 Rotamase: PPIC-type P 99.9 1.4E-22 2.9E-27 133.3 10.4 82 33-120 1-95 (95)
5 PTZ00356 peptidyl-prolyl cis-t 99.9 1.4E-22 2.9E-27 137.9 10.1 89 25-119 2-114 (115)
6 PRK03002 prsA peptidylprolyl i 99.9 1.2E-22 2.5E-27 157.0 10.4 102 14-122 123-226 (285)
7 PRK02998 prsA peptidylprolyl i 99.9 1.4E-22 3.1E-27 156.3 10.3 102 14-122 121-224 (283)
8 TIGR02933 nifM_nitrog nitrogen 99.9 1.7E-22 3.6E-27 154.0 10.1 101 16-122 111-221 (256)
9 PRK03095 prsA peptidylprolyl i 99.9 2.1E-22 4.5E-27 155.7 10.6 101 15-122 120-222 (287)
10 PRK04405 prsA peptidylprolyl i 99.9 4.9E-22 1.1E-26 154.5 10.8 102 15-122 129-237 (298)
11 PRK10770 peptidyl-prolyl cis-t 99.9 1.5E-21 3.3E-26 156.5 9.7 96 21-122 148-256 (413)
12 PRK00059 prsA peptidylprolyl i 99.8 7.6E-21 1.6E-25 148.9 10.9 101 16-122 183-288 (336)
13 PRK12450 foldase protein PrsA; 99.8 5.3E-21 1.1E-25 149.3 8.4 107 15-122 133-243 (309)
14 PRK01326 prsA foldase protein 99.8 2.8E-20 6.1E-25 145.3 7.3 89 27-122 144-240 (310)
15 PRK10788 periplasmic folding c 99.8 7.3E-20 1.6E-24 153.7 9.9 101 15-122 257-359 (623)
16 PRK10770 peptidyl-prolyl cis-t 99.8 9.7E-20 2.1E-24 146.1 7.6 92 25-122 263-366 (413)
17 TIGR02925 cis_trans_EpsD pepti 99.8 1.8E-19 3.9E-24 134.6 8.5 101 15-122 125-226 (232)
18 KOG3259|consensus 99.7 1.3E-17 2.8E-22 116.8 8.4 90 23-118 49-161 (163)
19 COG0760 SurA Parvulin-like pep 99.5 7E-16 1.5E-20 116.2 -0.0 92 25-122 165-263 (320)
20 PF13145 Rotamase_2: PPIC-type 99.2 9.2E-12 2E-16 82.6 2.3 99 14-122 8-109 (121)
21 PRK10788 periplasmic folding c 94.4 0.2 4.3E-06 42.6 7.6 69 42-121 505-578 (623)
22 PF12075 KN_motif: KN motif; 65.0 3.2 6.9E-05 22.9 0.7 9 107-115 4-12 (39)
23 PF05225 HTH_psq: helix-turn-h 62.2 15 0.00033 20.4 3.3 27 39-65 2-29 (45)
24 PRK13696 hypothetical protein; 43.7 64 0.0014 19.6 4.0 30 32-63 4-33 (62)
25 COG1986 Inosine/xanthosine tri 32.0 60 0.0013 23.7 3.1 40 43-82 110-151 (175)
26 PF04218 CENP-B_N: CENP-B N-te 31.9 58 0.0012 18.6 2.5 23 43-65 13-35 (53)
27 PF12090 Spt20: Spt20 family; 30.3 55 0.0012 23.8 2.7 38 72-122 46-83 (182)
28 TIGR00370 conserved hypothetic 26.7 29 0.00062 25.7 0.7 12 106-117 165-176 (202)
29 PF01476 LysM: LysM domain; I 26.2 44 0.00095 17.6 1.2 17 49-65 3-19 (44)
30 PF04282 DUF438: Family of unk 24.7 1.1E+02 0.0023 19.0 2.9 23 42-64 2-24 (71)
31 PF04255 DUF433: Protein of un 24.0 96 0.0021 17.8 2.5 23 42-64 21-43 (56)
32 smart00796 AHS1 Allophanate hy 23.8 36 0.00077 25.1 0.7 13 106-118 175-187 (201)
33 PHA00675 hypothetical protein 23.4 1.4E+02 0.0031 18.9 3.3 28 38-65 24-52 (78)
34 PF02796 HTH_7: Helix-turn-hel 22.4 98 0.0021 16.8 2.2 25 41-65 10-34 (45)
35 COG2152 Predicted glycosylase 22.2 63 0.0014 25.8 1.8 25 87-117 198-222 (314)
36 PRK06043 fumarate hydratase; P 22.0 1.4E+02 0.003 22.2 3.5 38 16-53 10-48 (192)
37 PRK05753 nucleoside diphosphat 21.7 1.6E+02 0.0035 20.3 3.7 31 83-120 93-124 (137)
38 PF02682 AHS1: Allophanate hyd 21.7 27 0.00059 25.7 -0.3 66 51-119 109-187 (202)
39 PF12583 TPPII_N: Tripeptidyl 21.7 1.3 2.7E-05 31.1 -6.9 51 2-52 54-105 (139)
40 COG2442 Uncharacterized conser 21.4 1.1E+02 0.0023 19.3 2.5 23 42-64 33-55 (79)
41 PF01272 GreA_GreB: Transcript 21.4 1.8E+02 0.0039 17.6 3.5 32 83-121 44-75 (77)
42 PRK06842 fumarate hydratase; P 20.9 1.5E+02 0.0033 21.8 3.5 39 15-53 9-48 (185)
43 COG0782 Uncharacterized conser 20.5 1.8E+02 0.0039 20.4 3.8 31 83-120 117-147 (151)
44 PF05683 Fumerase_C: Fumarase 20.0 1E+02 0.0022 23.1 2.5 39 15-53 35-74 (205)
No 1
>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A.
Probab=99.94 E-value=7.8e-27 Score=159.04 Aligned_cols=93 Identities=43% Similarity=0.752 Sum_probs=84.4
Q ss_pred CCCceEEEEEEEecC-----------HHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCccccee-CCCCcHHHHHHH
Q psy6496 24 KGGTAVKVRHILCEK-----------QSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMV-RGSMVGEFQDAA 89 (122)
Q Consensus 24 ~~~~~v~v~~I~v~~-----------~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~-~~~l~~~~~~a~ 89 (122)
..+++|+++||+|+. +..|++|+.+|++|.+|++||++||.|+ +.+||++||++ .+.++++|.+++
T Consensus 11 ~~~~~v~~~~I~i~~~~~~~~~~~~ak~~a~~i~~~l~~G~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~ 90 (117)
T PF13616_consen 11 QAPDEVKVSHILIPVPDASSRSKEEAKKKADSILKQLKSGADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAA 90 (117)
T ss_dssp GE--EEEEEEEEESS-----------HHHHHHHHHHHHCTCCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHH
T ss_pred CCcCeEEEEEEEEeccccccchhHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHH
Confidence 367899999999996 6789999999999999999999999984 68999999999 999999999999
Q ss_pred hcCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 90 FKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 90 ~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
++|++|++|+ ||++++|||||+|++||
T Consensus 91 ~~l~~G~is~------~v~s~~G~hIikv~drk 117 (117)
T PF13616_consen 91 FSLKVGEISG------PVESPNGYHIIKVTDRK 117 (117)
T ss_dssp HHS-TTECTC------EEEETTEEEEEEEEEE-
T ss_pred HcCCCCCCCC------eEEECCEEEEEEEEeeC
Confidence 9999999998 99999999999999997
No 2
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=99.93 E-value=9.3e-26 Score=148.28 Aligned_cols=89 Identities=35% Similarity=0.608 Sum_probs=84.9
Q ss_pred ceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh-hhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCC
Q psy6496 27 TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEP 105 (122)
Q Consensus 27 ~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~-~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~ 105 (122)
..+.++||++.+++.|++++++|++|.+|+++|++||.++ ...||++||+..++|||+|.+++++|++|++|+
T Consensus 3 ~~~~~~~I~~~~~~~A~~i~~~l~~g~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~------ 76 (93)
T PRK15441 3 KTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTG------ 76 (93)
T ss_pred CceEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHhCCCchhhcCccceeecccccCHHHHHHHHhCCCCCcCC------
Confidence 5789999999999999999999999999999999999984 568999999999999999999999999999998
Q ss_pred CeeeCceEEEEEEeee
Q psy6496 106 PIKTKFGYHIIMVEGK 121 (122)
Q Consensus 106 pi~s~~G~hIvkv~dr 121 (122)
||++++|||||+|++|
T Consensus 77 Pi~t~~G~hIlkv~~r 92 (93)
T PRK15441 77 PLHTQFGYHIIKVLYR 92 (93)
T ss_pred cEEcCCEEEEEEEEec
Confidence 9999999999999997
No 3
>KOG3258|consensus
Probab=99.90 E-value=1.9e-23 Score=139.72 Aligned_cols=100 Identities=83% Similarity=1.321 Sum_probs=95.0
Q ss_pred cCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchhhhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCC
Q psy6496 23 KKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVY 102 (122)
Q Consensus 23 ~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~ 102 (122)
.....-|.+|||+...+-++.++++.|++|..|.++|.+||+|.+.+||||||++++.|.-.|++++|+|+++.+..|++
T Consensus 34 kgggtaVKvRHiLCEKqGKi~EA~eKLk~G~~F~evAA~YSEdkar~GGDLGW~~RG~MvGPFQdaAFalpvs~~~~pv~ 113 (133)
T KOG3258|consen 34 KGGGTAVKVRHILCEKQGKINEAMEKLKSGMKFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQDAAFALPVSTVDKPVY 113 (133)
T ss_pred CCCcceEEEEEeeehhhchHHHHHHHHHcccchHHHHHHhccCccccCCcccceeccccccchhhhhhcccccccCCccc
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeCceEEEEEEeeeC
Q psy6496 103 TEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 103 ~~~pi~s~~G~hIvkv~drr 122 (122)
++.||+|.+|||||.|..|+
T Consensus 114 TdpP~KtkfGYHiImvEGrK 133 (133)
T KOG3258|consen 114 TDPPVKTKFGYHIIMVEGRK 133 (133)
T ss_pred cCCCcccccceEEEEecccC
Confidence 99999999999999998875
No 4
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=99.89 E-value=1.4e-22 Score=133.28 Aligned_cols=82 Identities=50% Similarity=0.830 Sum_probs=75.7
Q ss_pred EEEecC----------HHHHHHHHHHhcCCCC-HHHHHHHhcch--hhhcCCcccceeCCCCcHHHHHHHhcCCCCcccC
Q psy6496 33 HILCEK----------QSKVLEALEKLKSGVK-FPEVASQYSED--KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNN 99 (122)
Q Consensus 33 ~I~v~~----------~~~A~~i~~~l~~g~s-F~~la~~~S~d--~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~ 99 (122)
||+++. ++.|++++.+|++|.+ |+++|++||.+ ++.+||++||+..+.||++|.+++++|++|++|+
T Consensus 1 HIl~~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs~ 80 (95)
T PF00639_consen 1 HILVKPPPSDEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVSK 80 (95)
T ss_dssp EEEEESTTSCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBEE
T ss_pred CEEEECCCchhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcCC
Confidence 788874 5678999999999975 99999999965 4789999999999999999999999999999998
Q ss_pred CCCCCCCeeeCceEEEEEEee
Q psy6496 100 PVYTEPPIKTKFGYHIIMVEG 120 (122)
Q Consensus 100 ~~~~~~pi~s~~G~hIvkv~d 120 (122)
||++++|||||+|.|
T Consensus 81 ------pi~t~~G~~Ii~v~d 95 (95)
T PF00639_consen 81 ------PIETDNGYHIIKVED 95 (95)
T ss_dssp ------EEEETTEEEEEEEEE
T ss_pred ------CEEECCEEEEEEEEC
Confidence 999999999999986
No 5
>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
Probab=99.89 E-value=1.4e-22 Score=137.93 Aligned_cols=89 Identities=36% Similarity=0.589 Sum_probs=80.8
Q ss_pred CCceEEEEEEEecCH----------------------HHHHHHHHHhcCCC-CHHHHHHHhcch-hhhcCCcccceeCCC
Q psy6496 25 GGTAVKVRHILCEKQ----------------------SKVLEALEKLKSGV-KFPEVASQYSED-KARQGGDLGWMVRGS 80 (122)
Q Consensus 25 ~~~~v~v~~I~v~~~----------------------~~A~~i~~~l~~g~-sF~~la~~~S~d-~~~~gG~lG~~~~~~ 80 (122)
.+++|+++||++... ..++.++++|++|. +|+++|++||.+ +..+||++||+....
T Consensus 2 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~~~~~~gG~lG~~~~~~ 81 (115)
T PTZ00356 2 EGDTVRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIVSGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQ 81 (115)
T ss_pred CCcEEEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCCchhhcCccceeEcccc
Confidence 478999999999731 25788999999996 999999999987 467899999999999
Q ss_pred CcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEe
Q psy6496 81 MVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 119 (122)
Q Consensus 81 l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~ 119 (122)
|||.|.+++++|++|++|+ ||+++.|||||+++
T Consensus 82 L~~~~~~a~~~L~~Geis~------Pi~t~~G~hIlk~~ 114 (115)
T PTZ00356 82 MQKPFEDAAFALKVGEISD------IVHTDSGVHIILRL 114 (115)
T ss_pred cCHHHHHHHHcCCCCCCCC------cEEECCEEEEEEEc
Confidence 9999999999999999998 99999999999986
No 6
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=99.88 E-value=1.2e-22 Score=157.03 Aligned_cols=102 Identities=37% Similarity=0.622 Sum_probs=94.4
Q ss_pred ccccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhc
Q psy6496 14 KEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFK 91 (122)
Q Consensus 14 ~~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~ 91 (122)
..+|++.+.+.. ++++++||++++++.|+.++.+|++|.+|+++|++||.|+ ..+||++||+..+.|||.|.+++++
T Consensus 123 ~vtd~ei~~~Y~-~~~~~~~Ilv~~~~~A~~i~~~l~~G~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~ 201 (285)
T PRK03002 123 SVTEKDVKDHYK-PEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYK 201 (285)
T ss_pred CCCHHHHHHhhc-cceEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHc
Confidence 467777887776 5799999999999999999999999999999999999984 4689999999999999999999999
Q ss_pred CCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 92 LPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 92 l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
|++|++|+ ||++++|||||+|++++
T Consensus 202 L~~GevS~------pI~t~~G~hIikv~~~~ 226 (285)
T PRK03002 202 LKVGQISN------PVKSPNGYHIIKLTDKK 226 (285)
T ss_pred CCCCCcCC------cEEECCEEEEEEEeecC
Confidence 99999998 99999999999999875
No 7
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=99.88 E-value=1.4e-22 Score=156.34 Aligned_cols=102 Identities=39% Similarity=0.638 Sum_probs=93.7
Q ss_pred ccccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhc
Q psy6496 14 KEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFK 91 (122)
Q Consensus 14 ~~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~ 91 (122)
..+|++.+++.. ++++++||++++++.|+.++.+|++|.+|+++|++||.++ ..+||++||+..+.+||.|.++++.
T Consensus 121 ~Vtd~ei~~~y~-~~~~v~~Ilv~~e~~A~~i~~~l~~G~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~ 199 (283)
T PRK02998 121 TVTEKDVKDNYK-PEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYK 199 (283)
T ss_pred CCCHHHHHHhcc-cceEEEEEEeCCHHHHHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHc
Confidence 456777777765 4799999999999999999999999999999999999985 4689999999999999999999999
Q ss_pred CCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 92 LPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 92 l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
|++|++|+ ||+++.|||||+|++++
T Consensus 200 Lk~GevS~------pi~t~~G~hIikv~~~~ 224 (283)
T PRK02998 200 LDAGQVSE------PVKTTYGYHIIKVTDKK 224 (283)
T ss_pred CCCCCcCC------ceEECCEEEEEEEeccC
Confidence 99999998 99999999999999874
No 8
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=99.88 E-value=1.7e-22 Score=154.02 Aligned_cols=101 Identities=28% Similarity=0.502 Sum_probs=89.2
Q ss_pred ccccccccCCCceEEEEEEEecC--------HHHHHHHHHHhcCC-CCHHHHHHHhcchh-hhcCCcccceeCCCCcHHH
Q psy6496 16 EDSSGKQKKGGTAVKVRHILCEK--------QSKVLEALEKLKSG-VKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEF 85 (122)
Q Consensus 16 ~~~~~~~~~~~~~v~v~~I~v~~--------~~~A~~i~~~l~~g-~sF~~la~~~S~d~-~~~gG~lG~~~~~~l~~~~ 85 (122)
++.+...|..+..++++||+++. ...|..++.+|++| .+|+++|++||.++ +.+||++||++.+.|||.|
T Consensus 111 y~~~~~~~~~~e~~~~~hIli~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~sa~~GGdlG~~~~~~l~~~~ 190 (256)
T TIGR02933 111 YRRHAEQFKRPEQRLTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGLLGWVSRGLLYPQL 190 (256)
T ss_pred HHHHHHhcCCCCeEEEEEEEEECCcccHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCCccccCCccCCcCCCccChHH
Confidence 45667778888888999999974 23357788899887 69999999999984 6789999999999999999
Q ss_pred HHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 86 QDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 86 ~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
.+++++|++|+||+ ||+|+.|||||+|.+++
T Consensus 191 ~~~l~~L~~G~vS~------Pi~s~~G~hIlkl~~~~ 221 (256)
T TIGR02933 191 DAALFQLAEGELSP------PIESEIGWHLLLCEAIR 221 (256)
T ss_pred HHHHHcCCCCCcCC------ceeeCCeEEEEEEeeec
Confidence 99999999999998 99999999999999875
No 9
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=99.88 E-value=2.1e-22 Score=155.74 Aligned_cols=101 Identities=43% Similarity=0.683 Sum_probs=92.6
Q ss_pred cccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhcC
Q psy6496 15 EEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFKL 92 (122)
Q Consensus 15 ~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~l 92 (122)
.+|++.+.+.. ++++++||+++++..|.+++.+|++|.+|+++|++||.++ ..+||++||++.+.|||.|.+++++|
T Consensus 120 vtd~ei~~~y~-~~v~~~hIlv~~~~~A~~i~~~l~~G~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L 198 (287)
T PRK03095 120 ITDKELKDNYK-PEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKL 198 (287)
T ss_pred CCHHHHHhhhc-ccEEEEEEEeCCHHHHHHHHHHHHCCCCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhC
Confidence 45666777765 4699999999999999999999999999999999999985 46899999999999999999999999
Q ss_pred CCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 93 PISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 93 ~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
++|++|+ ||+++.|||||+|++++
T Consensus 199 ~~GevS~------pi~t~~G~hIikv~~~~ 222 (287)
T PRK03095 199 KKDEVSE------PVKSQFGYHIIKVTDIK 222 (287)
T ss_pred CCCCcCC------ceEECCEEEEEEEeeec
Confidence 9999998 99999999999999985
No 10
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=99.87 E-value=4.9e-22 Score=154.53 Aligned_cols=102 Identities=32% Similarity=0.498 Sum_probs=88.5
Q ss_pred cccccccccCC--CceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeC--CCCcHHHHHH
Q psy6496 15 EEDSSGKQKKG--GTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVR--GSMVGEFQDA 88 (122)
Q Consensus 15 ~~~~~~~~~~~--~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~--~~l~~~~~~a 88 (122)
.+|++.+.|.. +++|+++||++++++.|+.++++|++|++|+++|++||.|+ +.+||+|||+.. +.|||+|.++
T Consensus 129 Vtd~ei~~~y~~~~~~~~v~hIlv~~~~~A~~v~~~l~~G~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a 208 (298)
T PRK04405 129 VTNSQLKKAWKSYQPKVTVQHILVSKKSTAETVIKKLKDGKDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTA 208 (298)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEecChHHHHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHH
Confidence 45555554322 46899999999999999999999999999999999999984 468999998854 6899999999
Q ss_pred HhcCCCCccc-CCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 89 AFKLPISTVN-NPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 89 ~~~l~~G~vs-~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
+++|++|+++ + ||++++|||||+|++++
T Consensus 209 ~~~L~~Geiss~------pv~t~~GyhIikv~~~~ 237 (298)
T PRK04405 209 AFKLKNGEYTTT------PVKTTYGYEVIKMIKHP 237 (298)
T ss_pred HHcCCCCCccCC------CEEeCCeEEEEEEeecC
Confidence 9999999995 7 99999999999999863
No 11
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.86 E-value=1.5e-21 Score=156.52 Aligned_cols=96 Identities=27% Similarity=0.522 Sum_probs=88.0
Q ss_pred cccCCCceEEEEEEEec------------CHHHHHHHHHHhcCCCCHHHHHHHhcchh-hhcCCcccceeCCCCcHHHHH
Q psy6496 21 KQKKGGTAVKVRHILCE------------KQSKVLEALEKLKSGVKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQD 87 (122)
Q Consensus 21 ~~~~~~~~v~v~~I~v~------------~~~~A~~i~~~l~~g~sF~~la~~~S~d~-~~~gG~lG~~~~~~l~~~~~~ 87 (122)
..+..+++++++||+++ .+..|++++.+|++|.+|+++|+.||+++ +.+||++||++.+.|||.|.+
T Consensus 148 ~~~~~~~~~~~~~I~i~~~~~~s~~~~~~~~~~a~~l~~~l~~g~~F~~lA~~yS~~~~a~~gGdlg~~~~~~l~~~~~~ 227 (413)
T PRK10770 148 NQNDASTELNLSHILIPLPENPTQDQVDEAESQARSIVDQARNGADFGKLAIAYSADQQALKGGQMGWGRIQELPGLFAQ 227 (413)
T ss_pred hhccccceEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCcccccCCcCCccccccccHHHHH
Confidence 34566889999999997 24668899999999999999999999985 679999999999999999999
Q ss_pred HHhcCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 88 AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 88 a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
++++|++|++|+ ||+++.|||||+|.++|
T Consensus 228 ~~~~l~~G~is~------Pi~t~~GyhIikl~~~~ 256 (413)
T PRK10770 228 ALSTAKKGDIVG------PIRSGVGFHILKVNDLR 256 (413)
T ss_pred HHHhCCCCCCCC------cEECCCceEEEEEeeec
Confidence 999999999998 99999999999999975
No 12
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=99.85 E-value=7.6e-21 Score=148.93 Aligned_cols=101 Identities=31% Similarity=0.476 Sum_probs=92.3
Q ss_pred ccccccccC-CCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeC--CCCcHHHHHHHh
Q psy6496 16 EDSSGKQKK-GGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVR--GSMVGEFQDAAF 90 (122)
Q Consensus 16 ~~~~~~~~~-~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~--~~l~~~~~~a~~ 90 (122)
++.+...|. .+++++++||++++++.|++++++|++|.+|+++|++||.++ ..+||++||++. +.+||+|.++++
T Consensus 183 y~~~~~~~~~~p~~~~v~~I~~~~~~~a~~~~~~l~~g~~F~~la~~~s~~~~~~~~~g~lg~~~~~~~~l~~~~~~a~~ 262 (336)
T PRK00059 183 YNENKSKFTEKPNTMHLAHILVKTEDEAKKVKKRLDKGEDFAKVAKEVSQDPGSKDKGGDLGDVPYSDSGYDKEFMDGAK 262 (336)
T ss_pred HHHhhhhhcCCcceEEEEEEEecCHHHHHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcccccccccCccCHHHHHHHH
Confidence 445556675 688999999999999999999999999999999999999983 578999999998 789999999999
Q ss_pred cCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 91 KLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 91 ~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
.|++|+||+ ||.+++|||||+|++++
T Consensus 263 ~l~~Gevs~------pi~~~~G~~i~~v~~~~ 288 (336)
T PRK00059 263 ALKEGEISA------PVKTQFGYHIIKAIKKK 288 (336)
T ss_pred cCCCCCcCc------cEecCCeEEEEEEEeec
Confidence 999999998 99999999999999875
No 13
>PRK12450 foldase protein PrsA; Reviewed
Probab=99.84 E-value=5.3e-21 Score=149.34 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=91.3
Q ss_pred cccccccccCC--CceEEEEEEEecCHHHHHHHHHHhc-CCCCHHHHHHHhcchhhhcCCcccceeC-CCCcHHHHHHHh
Q psy6496 15 EEDSSGKQKKG--GTAVKVRHILCEKQSKVLEALEKLK-SGVKFPEVASQYSEDKARQGGDLGWMVR-GSMVGEFQDAAF 90 (122)
Q Consensus 15 ~~~~~~~~~~~--~~~v~v~~I~v~~~~~A~~i~~~l~-~g~sF~~la~~~S~d~~~~gG~lG~~~~-~~l~~~~~~a~~ 90 (122)
.+|++.+.|.. .++++++||++.+++.|+.++.+|+ .|++|+++|++||.++ ..||++||... +.|||+|.++++
T Consensus 133 Vtd~evk~~y~~~~~~~~~~~I~~~~~~~A~~i~~~l~~~G~dF~~lAk~~S~~~-~~~g~~~f~~~~~~l~~ef~~aa~ 211 (309)
T PRK12450 133 ISKKDYRQAYDAYTPTMTAEIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAA-DKKTTYTFDSGETTLPAEVVRAAS 211 (309)
T ss_pred CCHHHHHHHHHHhCccceeEEEEeCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCc-ccCCcccccCCCCCCCHHHHHHHH
Confidence 45556554432 3589999999999999999999998 4999999999999874 46789998764 579999999999
Q ss_pred cCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 91 KLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 91 ~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
.|++|++|+|+.+..|++|++|||||+|++++
T Consensus 212 ~Lk~GevS~~i~~~~pv~t~~GyhIikl~~~~ 243 (309)
T PRK12450 212 GLKEGNRSEIITALDPATSKRTYHIIKVTKKA 243 (309)
T ss_pred cCCCCCccccccCCCccccCCceEEEEEeccc
Confidence 99999999988776699999999999999874
No 14
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=99.82 E-value=2.8e-20 Score=145.26 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=81.1
Q ss_pred ceEEEEEEEecCHHHHHHHHHHhc-CCCCHHHHHHHhcchhhhcCCcccceeC-CCCcHHHHHHHhcCCCCcccCCCCCC
Q psy6496 27 TAVKVRHILCEKQSKVLEALEKLK-SGVKFPEVASQYSEDKARQGGDLGWMVR-GSMVGEFQDAAFKLPISTVNNPVYTE 104 (122)
Q Consensus 27 ~~v~v~~I~v~~~~~A~~i~~~l~-~g~sF~~la~~~S~d~~~~gG~lG~~~~-~~l~~~~~~a~~~l~~G~vs~~~~~~ 104 (122)
++++++||++.+++.|+.++.+|+ .|++|+++|++||. ++.+||++||++. ..||++|.+++++|++|+||+
T Consensus 144 ~~~~~~~I~~~~~~~A~~i~~~l~~~G~dF~~lA~~~S~-s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~----- 217 (310)
T PRK01326 144 PEVTAQIIRLDNEDKAKSVLEEAKAEGADFAQIAKENTT-TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSD----- 217 (310)
T ss_pred ccccchhhhHhhhHHHHHHHHHHHhCCCCHHHHHHHhCc-ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCC-----
Confidence 568999999999999999999999 59999999999998 6678999999987 479999999999999999999
Q ss_pred CCeee------CceEEEEEEeeeC
Q psy6496 105 PPIKT------KFGYHIIMVEGKK 122 (122)
Q Consensus 105 ~pi~s------~~G~hIvkv~drr 122 (122)
||++ .+|||||+|.++|
T Consensus 218 -pv~t~~~~~~~~GyhIikv~~~~ 240 (310)
T PRK01326 218 -VISVLDPTAYQSKYYIVKVTKKT 240 (310)
T ss_pred -ceecCCCCcCCceEEEEEEeccC
Confidence 7765 7799999999875
No 15
>PRK10788 periplasmic folding chaperone; Provisional
Probab=99.81 E-value=7.3e-20 Score=153.66 Aligned_cols=101 Identities=25% Similarity=0.423 Sum_probs=92.9
Q ss_pred cccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcch--hhhcCCcccceeCCCCcHHHHHHHhcC
Q psy6496 15 EEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED--KARQGGDLGWMVRGSMVGEFQDAAFKL 92 (122)
Q Consensus 15 ~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d--~~~~gG~lG~~~~~~l~~~~~~a~~~l 92 (122)
.+++++.+|..+++++++||++++++.|++++.+|++|++|+++|++||.| ++.+||+|||++.+.||++|.++++ +
T Consensus 257 ~y~~~~~~~~~~e~~~~~~i~~~~~~~A~~~~~~l~~G~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~ 335 (623)
T PRK10788 257 YYDQHQDQFTQPERKRYSIIQTKTEAEAKAVLDELKKGADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGL-K 335 (623)
T ss_pred HHHHHHHhcCChhheeeeEEEECCHHHHHHHHHHHhCCCCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhc-c
Confidence 456677788899999999999999999999999999999999999999998 4679999999999999999999988 6
Q ss_pred CCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 93 PISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 93 ~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
++|++|+ ||+++.|||||+|++++
T Consensus 336 ~~G~vs~------pv~t~~G~~Iikv~~~~ 359 (623)
T PRK10788 336 EKGQLSG------VIKSSVGFLIVRLDDIQ 359 (623)
T ss_pred CCCCcCC------cEEECCeEEEEEEEeec
Confidence 8899998 99999999999999875
No 16
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.80 E-value=9.7e-20 Score=146.13 Aligned_cols=92 Identities=34% Similarity=0.629 Sum_probs=82.7
Q ss_pred CCceEEEEEEEecC---------HHHHHHHHHHhcCCC-CHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhcC
Q psy6496 25 GGTAVKVRHILCEK---------QSKVLEALEKLKSGV-KFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFKL 92 (122)
Q Consensus 25 ~~~~v~v~~I~v~~---------~~~A~~i~~~l~~g~-sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~l 92 (122)
..++++++||+++. ...|.+++.+|.+|. +|+++|++||.|+ +.+||++||+..+.|+|+|.+++++|
T Consensus 263 ~~~e~~~~hIli~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~~A~~~S~d~~s~~~gG~lg~~~~~~~~~~~~~~~~~l 342 (413)
T PRK10770 263 SVTEVHARHILLKPSPIMTDEQARAKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALMRL 342 (413)
T ss_pred hHHhhhhhheEECCCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCCChHhhCCcCCccCccccCHHHHHHHHcC
Confidence 45679999999973 245678899999995 9999999999984 67899999999999999999999999
Q ss_pred CCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 93 PISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 93 ~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
++|++|. ||.++.|||||+|+++|
T Consensus 343 ~~GeiS~------pv~t~~g~~ii~v~~~~ 366 (413)
T PRK10770 343 NKGQISA------PVHSSFGWHLIELLDTR 366 (413)
T ss_pred CCCCcCC------cEEcCCeEEEEEEeecc
Confidence 9999998 99999999999999975
No 17
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=99.80 E-value=1.8e-19 Score=134.62 Aligned_cols=101 Identities=7% Similarity=-0.019 Sum_probs=90.4
Q ss_pred cccccccccCCCceEEEEEEEecC-HHHHHHHHHHhcCCCCHHHHHHHhcchhhhcCCcccceeCCCCcHHHHHHHhcCC
Q psy6496 15 EEDSSGKQKKGGTAVKVRHILCEK-QSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLP 93 (122)
Q Consensus 15 ~~~~~~~~~~~~~~v~v~~I~v~~-~~~A~~i~~~l~~g~sF~~la~~~S~d~~~~gG~lG~~~~~~l~~~~~~a~~~l~ 93 (122)
-++++...|..+++|+++||+++. ++.|+++++++++|.+|++++..++......+|.+||++.++|||+|.+++++|+
T Consensus 125 ~Y~~~~~~f~~~~~~~~~hIlv~~~~~~a~~~~~~l~~g~~f~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~ 204 (232)
T TIGR02925 125 YFQEHPQLFAERKLYNLQEIALPPDMELLDELRAMVENGKPLEDILAWLKAKNVPFNASSAARPAEQLPAEILAVLAKLK 204 (232)
T ss_pred HHHhCHHhcCCCceEEEEEEEecCChhHHHHHHHHHhcCCCHHHHHHHhhhcCcccccccccCchhhCCHHHHHHHHhCC
Confidence 467788889999999999999975 4568999999999999999999987654456788999999999999999999999
Q ss_pred CCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 94 ISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 94 ~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
+|+|+ ||+|.+||||++|.+++
T Consensus 205 ~G~is-------~v~s~~G~hiikv~~~~ 226 (232)
T TIGR02925 205 PGAPL-------VVQGPNNVLILVLADAQ 226 (232)
T ss_pred CCCeE-------EeecCCceEEEEEeccc
Confidence 99998 79999999999999875
No 18
>KOG3259|consensus
Probab=99.73 E-value=1.3e-17 Score=116.79 Aligned_cols=90 Identities=37% Similarity=0.571 Sum_probs=77.6
Q ss_pred cCCCceEEEEEEEecC-----------------HHHH----HHHHHHhcCCC-CHHHHHHHhcch-hhhcCCcccceeCC
Q psy6496 23 KKGGTAVKVRHILCEK-----------------QSKV----LEALEKLKSGV-KFPEVASQYSED-KARQGGDLGWMVRG 79 (122)
Q Consensus 23 ~~~~~~v~v~~I~v~~-----------------~~~A----~~i~~~l~~g~-sF~~la~~~S~d-~~~~gG~lG~~~~~ 79 (122)
-..+++|+.+||||+- ++.| +.+.+.|+.|. +|.+||+++|++ ++..||||||+..+
T Consensus 49 ~~~p~~Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrg 128 (163)
T KOG3259|consen 49 QGEPARVRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRG 128 (163)
T ss_pred CCCccceeEEEEEEccccCCCCcccccccchhhHHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCcccccccc
Confidence 3457899999999972 3444 45556677774 999999999998 57899999999999
Q ss_pred CCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEE
Q psy6496 80 SMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMV 118 (122)
Q Consensus 80 ~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv 118 (122)
+|-..|.++.|+|++|++|+ ||.|+.|+|||+=
T Consensus 129 qMqk~FEdaafaL~~ge~Sg------iV~t~SG~HiI~R 161 (163)
T KOG3259|consen 129 QMQKPFEDAAFALKVGEMSG------IVDTDSGVHIIYR 161 (163)
T ss_pred cccccchhhhhhcccccccC------ceecCCceEEEEe
Confidence 99999999999999999999 9999999999974
No 19
>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7e-16 Score=116.16 Aligned_cols=92 Identities=49% Similarity=0.784 Sum_probs=83.7
Q ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCC-----CCHHHHHHHhcchh-hh-cCCcccceeCCCCcHHHHHHHhcCCCCcc
Q psy6496 25 GGTAVKVRHILCEKQSKVLEALEKLKSG-----VKFPEVASQYSEDK-AR-QGGDLGWMVRGSMVGEFQDAAFKLPISTV 97 (122)
Q Consensus 25 ~~~~v~v~~I~v~~~~~A~~i~~~l~~g-----~sF~~la~~~S~d~-~~-~gG~lG~~~~~~l~~~~~~a~~~l~~G~v 97 (122)
..++++.+||+++.+..|.+++..++.+ .+|+++|++||.++ .. .||++||...+.++|+|..+++.+++|++
T Consensus 165 ~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g~~ 244 (320)
T COG0760 165 KVTEVQARHILVKAEAKAKEALALLKKGVREAKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGEV 244 (320)
T ss_pred HHHHHhhcccccCchHhHHHHHHHHHhccccccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCccc
Confidence 3589999999999999999999988877 79999999999985 33 47788889999999999999999999999
Q ss_pred cCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 98 NNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 98 s~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
+. ||++.+||||++|+++|
T Consensus 245 ~~------pv~t~~g~~ii~v~~~~ 263 (320)
T COG0760 245 SA------PVKTSFGYHIIKVEKKR 263 (320)
T ss_pred cc------ccccchHHHHHHHHhhh
Confidence 98 99999999999998875
No 20
>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A.
Probab=99.18 E-value=9.2e-12 Score=82.63 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=70.7
Q ss_pred ccccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCC--CCHHHHHHHhcchhhhcCCcccceeCC-CCcHHHHHHHh
Q psy6496 14 KEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSG--VKFPEVASQYSEDKARQGGDLGWMVRG-SMVGEFQDAAF 90 (122)
Q Consensus 14 ~~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g--~sF~~la~~~S~d~~~~gG~lG~~~~~-~l~~~~~~a~~ 90 (122)
+-++.++..|..+..+.+.+++++++..+......++.+ .+|..++..++.. ..+++|.... .|++.|.++++
T Consensus 8 ~yY~~n~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ 83 (121)
T PF13145_consen 8 AYYEENKDRFSQPERRIFQIIFFKAEDAAEAAKALAKKKAGEDFAALAKKYSID----QSDLGIFTDESDLPPEFADALF 83 (121)
T ss_dssp HHHHH-HHHH--EEEEEEEEEEESSCCHHHHHHHHHHHHCHHHHHHHHHCTHCC----CCCCCCCETTHHH-HHHHCCHT
T ss_pred HHHHHHHHHhCCcccEEEEEEEeCCHHHHHHHHHHHhhcccchHHHHHHhcCCc----cccccccccccccCHHHHHHHh
Confidence 457788999999999888888888766555555555443 4677777665543 3445566654 68999999999
Q ss_pred cCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 91 KLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 91 ~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
.|++|++|+ ||.+.+|||||+|.+++
T Consensus 84 ~l~~g~~s~------~i~~~~~~~v~~v~~~~ 109 (121)
T PF13145_consen 84 KLKPGEVSG------PIESGNGYYVVKVKERN 109 (121)
T ss_dssp T-STT-EEE------EEEETTEEEEEEEEEEE
T ss_pred cCCCCCeee------eEEECCEEEEEEEEeec
Confidence 999999998 99999999999998863
No 21
>PRK10788 periplasmic folding chaperone; Provisional
Probab=94.42 E-value=0.2 Score=42.65 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHhcchhhhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCCCeee-----CceEEEE
Q psy6496 42 VLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKT-----KFGYHII 116 (122)
Q Consensus 42 A~~i~~~l~~g~sF~~la~~~S~d~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s-----~~G~hIv 116 (122)
|++++.+|++|.+.+ +++. . ...-...+++++..++|.+..++|.++.|..+. |+.. ..||.|+
T Consensus 505 a~~ll~~l~~g~~~~-~~~~--~--~~~~~~~~~~~r~~~~~~~~~~~F~~~~~~~~~------~~~~~~~~~~~~~~v~ 573 (623)
T PRK10788 505 AEKLLAALKAGKGEE-AMKA--A--GLSFGEPKTLSRTSQDDPLSQAAFALPLPAKDK------PSYGMAQDMQGNVVLI 573 (623)
T ss_pred HHHHHHHHhcCCchh-hhHh--c--CCccccccceecCCCChHHHHHHhcCCCCCCCC------CeeEEEEcCCCCEEEE
Confidence 566777788886542 3221 1 111122356776667778999999999988887 5533 5789999
Q ss_pred EEeee
Q psy6496 117 MVEGK 121 (122)
Q Consensus 117 kv~dr 121 (122)
+|.++
T Consensus 574 ~v~~v 578 (623)
T PRK10788 574 ALDEV 578 (623)
T ss_pred EEccc
Confidence 99865
No 22
>PF12075 KN_motif: KN motif; InterPro: IPR021939 This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors [].
Probab=64.97 E-value=3.2 Score=22.92 Aligned_cols=9 Identities=56% Similarity=1.320 Sum_probs=8.1
Q ss_pred eeeCceEEE
Q psy6496 107 IKTKFGYHI 115 (122)
Q Consensus 107 i~s~~G~hI 115 (122)
++|++||||
T Consensus 4 v~tPYGyhi 12 (39)
T PF12075_consen 4 VETPYGYHI 12 (39)
T ss_pred ccCCcceee
Confidence 689999998
No 23
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=62.17 E-value=15 Score=20.45 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHhcch
Q psy6496 39 QSKVLEALEKLKSG-VKFPEVASQYSED 65 (122)
Q Consensus 39 ~~~A~~i~~~l~~g-~sF~~la~~~S~d 65 (122)
++....++..+++| .++..+|+.|...
T Consensus 2 ee~l~~Ai~~v~~g~~S~r~AA~~ygVp 29 (45)
T PF05225_consen 2 EEDLQKAIEAVKNGKMSIRKAAKKYGVP 29 (45)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHT--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCcC
Confidence 45677788888899 7999999999876
No 24
>PRK13696 hypothetical protein; Provisional
Probab=43.73 E-value=64 Score=19.58 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=20.6
Q ss_pred EEEEecCHHHHHHHHHHhcCCCCHHHHHHHhc
Q psy6496 32 RHILCEKQSKVLEALEKLKSGVKFPEVASQYS 63 (122)
Q Consensus 32 ~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S 63 (122)
..|.++++ +-..+...+.|.||+++..++.
T Consensus 4 K~ItI~dd--~Y~~L~~kk~~~SFSevi~~L~ 33 (62)
T PRK13696 4 KTITISDD--VYEKLLEIKGDKSFSEVIRELI 33 (62)
T ss_pred ceEEeCHH--HHHHHHHHhCCCCHHHHHHHHH
Confidence 35666644 4344447778899999999877
No 25
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=31.98 E-value=60 Score=23.73 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCHHHHHHHhcch--hhhcCCcccceeCCCCc
Q psy6496 43 LEALEKLKSGVKFPEVASQYSED--KARQGGDLGWMVRGSMV 82 (122)
Q Consensus 43 ~~i~~~l~~g~sF~~la~~~S~d--~~~~gG~lG~~~~~~l~ 82 (122)
..+.+++++|..|.+++.+|+.- -..+.|-+|.++.+.+.
T Consensus 110 ~~v~~~vl~G~ElG~v~~~~~g~~~ig~~~GaIG~lT~g~lt 151 (175)
T COG1986 110 PRVLEEVLQGKELGEVMEEYTGIDEIGRKEGAIGVLTNGKLT 151 (175)
T ss_pred HHHHHHHHccccHHHHHHHHcCCCCcCcccceEEEeeCCeee
Confidence 46788889999999999999874 36788999999998874
No 26
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=31.89 E-value=58 Score=18.63 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=17.1
Q ss_pred HHHHHHhcCCCCHHHHHHHhcch
Q psy6496 43 LEALEKLKSGVKFPEVASQYSED 65 (122)
Q Consensus 43 ~~i~~~l~~g~sF~~la~~~S~d 65 (122)
-++...+.+|.+..++|++|...
T Consensus 13 ~~iI~~~e~g~s~~~ia~~fgv~ 35 (53)
T PF04218_consen 13 LEIIKRLEEGESKRDIAREFGVS 35 (53)
T ss_dssp HHHHHHHHCTT-HHHHHHHHT--
T ss_pred HHHHHHHHcCCCHHHHHHHhCCC
Confidence 45677788999999999999875
No 27
>PF12090 Spt20: Spt20 family; InterPro: IPR021950 This presumed domain is found in the Spt20 proteins from both human and yeast. The Spt20 protein is part of the SAGA complex which is a large cmplex mediating histone deacetylation. Yeast Spt20 has been shown to play a role in structural integrity of the SAGA complex as as no intact SAGA could be purified in spt20 deletion strains.
Probab=30.25 E-value=55 Score=23.79 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=28.5
Q ss_pred cccceeCCCCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 72 DLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 72 ~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
.|.++..+.+|+.+.+.+... +|.--.|..|+.|.|.|
T Consensus 46 ~L~~I~~~~iP~~Lle~l~~~-------------~v~FYdGClIveV~D~R 83 (182)
T PF12090_consen 46 FLEYIDAGEIPHDLLELLDDA-------------NVPFYDGCLIVEVRDHR 83 (182)
T ss_pred HHHHHHcCCCCHHHHHHHHhC-------------CCeeEcCEEEEEEeccc
Confidence 345566777888888887661 46677899999998876
No 28
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=26.74 E-value=29 Score=25.74 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=10.6
Q ss_pred CeeeCceEEEEE
Q psy6496 106 PIKTKFGYHIIM 117 (122)
Q Consensus 106 pi~s~~G~hIvk 117 (122)
|+.++.|||||=
T Consensus 165 p~~sPGGW~iIG 176 (202)
T TIGR00370 165 PISTPGGWQLIG 176 (202)
T ss_pred ccCCCCcceEee
Confidence 889999999973
No 29
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=26.19 E-value=44 Score=17.58 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=10.6
Q ss_pred hcCCCCHHHHHHHhcch
Q psy6496 49 LKSGVKFPEVASQYSED 65 (122)
Q Consensus 49 l~~g~sF~~la~~~S~d 65 (122)
++.|+++..+|++|...
T Consensus 3 V~~gDtl~~IA~~~~~~ 19 (44)
T PF01476_consen 3 VQPGDTLWSIAKRYGIS 19 (44)
T ss_dssp E-TT--HHHHHHHTTS-
T ss_pred ECcCCcHHHHHhhhhhh
Confidence 46788999999998654
No 30
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=24.72 E-value=1.1e+02 Score=19.05 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHhcc
Q psy6496 42 VLEALEKLKSGVKFPEVASQYSE 64 (122)
Q Consensus 42 A~~i~~~l~~g~sF~~la~~~S~ 64 (122)
.+.++.+|.+|.+++++-++|..
T Consensus 2 LK~ii~~Lh~G~~~e~vk~~F~~ 24 (71)
T PF04282_consen 2 LKEIIKRLHEGEDPEEVKEEFKK 24 (71)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 36788899999999999888765
No 31
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.97 E-value=96 Score=17.84 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHhcc
Q psy6496 42 VLEALEKLKSGVKFPEVASQYSE 64 (122)
Q Consensus 42 A~~i~~~l~~g~sF~~la~~~S~ 64 (122)
...++..+.+|.+.++++..|..
T Consensus 21 v~~i~~~~~~G~s~eeI~~~yp~ 43 (56)
T PF04255_consen 21 VRDILDLLAAGESPEEIAEDYPS 43 (56)
T ss_dssp HHHHHHHHHTT--HHHHHHHSTT
T ss_pred HHHHHHHHHcCCCHHHHHHHCCC
Confidence 45677778899999999999864
No 32
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=23.82 E-value=36 Score=25.12 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=11.1
Q ss_pred CeeeCceEEEEEE
Q psy6496 106 PIKTKFGYHIIMV 118 (122)
Q Consensus 106 pi~s~~G~hIvkv 118 (122)
|..|+.||+||=-
T Consensus 175 p~~SPGGW~iIG~ 187 (201)
T smart00796 175 PLESPGGWQLIGR 187 (201)
T ss_pred CCCCCCcceEeee
Confidence 7899999999843
No 33
>PHA00675 hypothetical protein
Probab=23.37 E-value=1.4e+02 Score=18.89 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHh-cCCCCHHHHHHHhcch
Q psy6496 38 KQSKVLEALEKL-KSGVKFPEVASQYSED 65 (122)
Q Consensus 38 ~~~~A~~i~~~l-~~g~sF~~la~~~S~d 65 (122)
++.+.++|+..+ +.|.+..++|++|...
T Consensus 24 t~~qV~~IR~l~~r~G~s~~~IA~~fGVs 52 (78)
T PHA00675 24 TDAEVERIRELHEVEGMSYAVLAEKFEQS 52 (78)
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHhCCC
Confidence 456688999888 8999999999999875
No 34
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=22.38 E-value=98 Score=16.81 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhcch
Q psy6496 41 KVLEALEKLKSGVKFPEVASQYSED 65 (122)
Q Consensus 41 ~A~~i~~~l~~g~sF~~la~~~S~d 65 (122)
..+.+.+.+.+|.+-.++|+.+...
T Consensus 10 ~~~~i~~l~~~G~si~~IA~~~gvs 34 (45)
T PF02796_consen 10 QIEEIKELYAEGMSIAEIAKQFGVS 34 (45)
T ss_dssp CHHHHHHHHHTT--HHHHHHHTTS-
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCcC
Confidence 4677777788999999999988754
No 35
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=22.22 E-value=63 Score=25.78 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHhcCCCCcccCCCCCCCCeeeCceEEEEE
Q psy6496 87 DAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 117 (122)
Q Consensus 87 ~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvk 117 (122)
.+-+++++|--+. ||++..||.|++
T Consensus 198 ~~~d~~KIG~g~~------Pikt~egwLvly 222 (314)
T COG2152 198 GWWDELKIGWGTP------PIKTEEGWLVLY 222 (314)
T ss_pred CcchhhhccCCCC------CcCcccceEEEE
Confidence 3455778877666 999999999986
No 36
>PRK06043 fumarate hydratase; Provisional
Probab=21.98 E-value=1.4e+02 Score=22.19 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=31.8
Q ss_pred ccccccccCCCceEEEEEEEecCHHHH-HHHHHHhcCCC
Q psy6496 16 EDSSGKQKKGGTAVKVRHILCEKQSKV-LEALEKLKSGV 53 (122)
Q Consensus 16 ~~~~~~~~~~~~~v~v~~I~v~~~~~A-~~i~~~l~~g~ 53 (122)
++++.++++.++.|.++-.++..++.| .++.+.+.+|+
T Consensus 10 ~~e~i~~L~vGD~V~LsG~IytaRDaaH~rl~e~~~~G~ 48 (192)
T PRK06043 10 KKEDIEKLNVGDIVYISGEILTARDEAHARILEMKEKGK 48 (192)
T ss_pred CHHHHhhCCCCCEEEEEEEEEEEeHHHHHHHHHHHhcCC
Confidence 456789999999999999999988876 57777777774
No 37
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=21.72 E-value=1.6e+02 Score=20.25 Aligned_cols=31 Identities=13% Similarity=-0.032 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCCCcccCCCCCCCCeeeCce-EEEEEEee
Q psy6496 83 GEFQDAAFKLPISTVNNPVYTEPPIKTKFG-YHIIMVEG 120 (122)
Q Consensus 83 ~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G-~hIvkv~d 120 (122)
..+..++...++|+.. .++++.| .+-++|.+
T Consensus 93 SPlG~ALlG~~~Gd~v-------~v~~p~G~~~~~~I~~ 124 (137)
T PRK05753 93 APVGAALLGLSVGQSI-------DWPLPGGKETHLEVLE 124 (137)
T ss_pred CHHHHHHcCCCCCCEE-------EEECCCCCEEEEEEEE
Confidence 5799999999999988 4777777 34455543
No 38
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=21.66 E-value=27 Score=25.75 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHhcchh--hhcCCcc-cceeCCCCcHHHHHHH-----hcCCCCccc--C---CCCCCCCeeeCceEEEEE
Q psy6496 51 SGVKFPEVASQYSEDK--ARQGGDL-GWMVRGSMVGEFQDAA-----FKLPISTVN--N---PVYTEPPIKTKFGYHIIM 117 (122)
Q Consensus 51 ~g~sF~~la~~~S~d~--~~~gG~l-G~~~~~~l~~~~~~a~-----~~l~~G~vs--~---~~~~~~pi~s~~G~hIvk 117 (122)
.|.+-+++.+.++... -.--|.+ |+-..+.|++.+.--= ...+.|.|. + -++ |..|+.|||||=
T Consensus 109 ~gls~~evi~~H~~~~y~V~~iGF~PGfpYL~gld~~l~~PR~~~PR~~vPaGSV~Iag~qtgIY---P~~sPGGW~iIG 185 (202)
T PF02682_consen 109 NGLSVEEVIRLHSSAEYRVYMIGFAPGFPYLGGLDPRLAVPRRSTPRTRVPAGSVGIAGRQTGIY---PQESPGGWQIIG 185 (202)
T ss_dssp HTS-HHHHHHHHHTS-EEEEEECSSTTEEEEECSSGGG-B---SS-EEEE-TTEEEEEBTEEEEE---SSSEEE-SEEEE
T ss_pred hCcCHHHHHHHHHcCchHhhccCcccCcHhhcccCcccCCCCCCCCCccCCCCEEEEccceEEEE---ecCCCCcceEEe
Confidence 4678888888887653 1122232 4555566666531110 012334432 0 122 889999999985
Q ss_pred Ee
Q psy6496 118 VE 119 (122)
Q Consensus 118 v~ 119 (122)
-+
T Consensus 186 rT 187 (202)
T PF02682_consen 186 RT 187 (202)
T ss_dssp EE
T ss_pred ec
Confidence 44
No 39
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=21.65 E-value=1.3 Score=31.12 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCcccccccccccCCC-ceEEEEEEEecCHHHHHHHHHHhcCC
Q psy6496 2 GPKKGSGKSSKDKEEDSSGKQKKGG-TAVKVRHILCEKQSKVLEALEKLKSG 52 (122)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~I~v~~~~~A~~i~~~l~~g 52 (122)
+|++++++..+.|+......+|... -.+.+.+|.==..+.|+.+|.+|++-
T Consensus 54 ~p~~~~~~~~s~kk~ktk~DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~ 105 (139)
T PF12583_consen 54 PPANSSGSPKSPKKDKTKWDEYSEALRDFQCSWIAKLEPENAEQVYEELLEA 105 (139)
T ss_dssp ------------------HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 5777777777776555444444332 11333333322446788888888754
No 40
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=21.44 E-value=1.1e+02 Score=19.34 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHhcc
Q psy6496 42 VLEALEKLKSGVKFPEVASQYSE 64 (122)
Q Consensus 42 A~~i~~~l~~g~sF~~la~~~S~ 64 (122)
-..++..|..|.++++++..|..
T Consensus 33 V~~Il~~l~~G~s~eeil~dyp~ 55 (79)
T COG2442 33 VWDILEMLAAGESIEEILADYPD 55 (79)
T ss_pred HHHHHHHHHCCCCHHHHHHhCCC
Confidence 45677888899999999998874
No 41
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=21.44 E-value=1.8e+02 Score=17.61 Aligned_cols=32 Identities=6% Similarity=-0.060 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEeee
Q psy6496 83 GEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 121 (122)
Q Consensus 83 ~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~dr 121 (122)
..+..|+...++|+.. .+..+.|-+-+++.+.
T Consensus 44 SPLG~ALlG~~~Gd~v-------~~~~~~g~~~~~I~~I 75 (77)
T PF01272_consen 44 SPLGKALLGKKVGDEV-------EVELPGGERKYEILEI 75 (77)
T ss_dssp SHHHHHHTT-BTT-EE-------EEEETTBEEEEEEEEE
T ss_pred CHHHHHhcCCCCCCEE-------EEEeCCceEEEEEEEE
Confidence 4799999999999988 5788887554555543
No 42
>PRK06842 fumarate hydratase; Provisional
Probab=20.85 E-value=1.5e+02 Score=21.80 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=32.3
Q ss_pred cccccccccCCCceEEEEEEEecCHHHH-HHHHHHhcCCC
Q psy6496 15 EEDSSGKQKKGGTAVKVRHILCEKQSKV-LEALEKLKSGV 53 (122)
Q Consensus 15 ~~~~~~~~~~~~~~v~v~~I~v~~~~~A-~~i~~~l~~g~ 53 (122)
-++++.++++.++.|.++-.++..++.| +++.+.+.+|+
T Consensus 9 l~~e~i~~L~vGD~V~LsG~i~taRDaAHkrl~e~l~~G~ 48 (185)
T PRK06842 9 LTEEKVKDLKAGDSVLISGYIYTARDAAHKRLIELLDKGE 48 (185)
T ss_pred CCHHHHhhCCCCCEEEEeEEEEEEeHHHHHHHHHHHhcCC
Confidence 4567789999999999999999988876 57777787774
No 43
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=20.51 E-value=1.8e+02 Score=20.39 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEee
Q psy6496 83 GEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120 (122)
Q Consensus 83 ~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~d 120 (122)
..+..+|...++|++. .+.++.|.+-++|..
T Consensus 117 SPig~aLlGk~vGd~v-------~v~~p~g~~~~~I~~ 147 (151)
T COG0782 117 SPLGRALLGKKVGDTV-------EVNTPGGEKEVEILS 147 (151)
T ss_pred CHHHHHHhCCCCCCEE-------EEecCCceEEEEEEE
Confidence 4799999999999998 577777666666654
No 44
>PF05683 Fumerase_C: Fumarase C-terminus; InterPro: IPR004647 This entry represents various Fe-S type hydro-lyases, including the beta subunit from both L-tartrate dehydratase (TtdB; EC:4.2.1.32) and class 2 fumarate hydratase (FumC; (4.2.1.2 from EC) []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of the archaeal proteins in this group is unknown.; GO: 0016836 hydro-lyase activity; PDB: 2ISB_A.
Probab=20.01 E-value=1e+02 Score=23.11 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=26.5
Q ss_pred cccccccccCCCceEEEEEEEecCHHHH-HHHHHHhcCCC
Q psy6496 15 EEDSSGKQKKGGTAVKVRHILCEKQSKV-LEALEKLKSGV 53 (122)
Q Consensus 15 ~~~~~~~~~~~~~~v~v~~I~v~~~~~A-~~i~~~l~~g~ 53 (122)
-++++.++++.++.|.++-.++..++.| .++.+.|++|.
T Consensus 35 lt~e~i~~L~vGD~V~LsG~i~taRDaaH~ri~e~l~~g~ 74 (205)
T PF05683_consen 35 LTEEDIRKLKVGDTVYLSGTIYTARDAAHKRIVELLERGE 74 (205)
T ss_dssp --HHHHHH--TT-EEEEEEEEEE--HHHHHHHHHHHHHT-
T ss_pred CCHHHHhhCCCCCEEEEeeEEEEEhHHHHHHHHHHHHcCC
Confidence 3457788999999999999999988877 67778888774
Done!