Query psy6496
Match_columns 122
No_of_seqs 120 out of 1101
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:36:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ui4_A Peptidyl-prolyl CIS-tra 100.0 1E-30 3.4E-35 173.5 13.2 97 26-122 5-101 (101)
2 1jns_A Peptidyl-prolyl CIS-tra 100.0 7.5E-29 2.6E-33 161.4 10.2 90 27-122 2-92 (92)
3 2rqs_A Parvulin-like peptidyl- 100.0 7.4E-28 2.5E-32 158.2 11.8 93 22-120 3-97 (97)
4 3gpk_A PPIC-type peptidyl-prol 100.0 3.3E-28 1.1E-32 164.2 10.1 92 25-122 4-104 (112)
5 4g2p_A Chaperone SURA; structu 100.0 7.7E-28 2.6E-32 161.7 11.6 93 24-122 4-108 (110)
6 1zk6_A Foldase protein PRSA; a 99.9 1.1E-27 3.8E-32 156.0 10.5 89 26-120 2-92 (93)
7 2pv1_A Chaperone SURA; surviVa 99.9 1.8E-27 6.1E-32 157.6 10.0 90 27-122 1-103 (103)
8 3i6c_A Peptidyl-prolyl CIS-tra 99.9 4.5E-27 1.5E-31 161.0 11.5 95 20-120 6-123 (123)
9 2lj4_A Peptidyl-prolyl CIS-tra 99.9 8.8E-27 3E-31 157.8 10.6 89 25-119 1-114 (115)
10 2jzv_A Foldase protein PRSA; p 99.9 4E-26 1.4E-30 153.0 11.5 90 25-120 4-111 (111)
11 2kgj_A Peptidyl-prolyl CIS-tra 99.9 1E-26 3.5E-31 154.3 8.1 89 27-122 2-94 (102)
12 3tc5_A Peptidyl-prolyl CIS-tra 99.9 2.1E-25 7.1E-30 159.7 11.2 94 21-120 50-166 (166)
13 1j6y_A Peptidyl-prolyl CIS-tra 99.9 7.7E-26 2.6E-30 157.6 5.4 99 15-119 13-138 (139)
14 1yw5_A Peptidyl prolyl CIS/tra 99.9 1.4E-24 4.8E-29 156.4 10.6 99 16-120 50-177 (177)
15 3rfw_A Cell-binding factor 2; 99.9 5.9E-24 2E-28 159.2 9.1 103 14-122 98-209 (252)
16 3nrk_A LIC12922; NC domain, pa 99.9 4E-22 1.4E-26 154.6 6.1 91 26-122 157-265 (325)
17 1m5y_A SurviVal protein, survi 99.8 8.5E-21 2.9E-25 149.7 9.2 102 15-122 140-254 (408)
18 1m5y_A SurviVal protein, survi 99.8 5.4E-19 1.8E-23 139.3 11.3 95 22-122 258-364 (408)
19 3rgc_A Possible periplasmic pr 99.7 1.3E-17 4.6E-22 124.6 5.7 86 15-122 122-207 (252)
20 2cob_A LCOR protein; MLR2, KIA 30.3 63 0.0022 19.2 3.4 28 38-65 15-43 (70)
21 3bmb_A Regulator of nucleoside 21.6 95 0.0032 20.2 3.5 30 83-119 92-125 (136)
22 1r71_A Transcriptional repress 20.3 1.1E+02 0.0037 21.1 3.7 48 40-91 40-88 (178)
No 1
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A
Probab=99.97 E-value=1e-30 Score=173.48 Aligned_cols=97 Identities=75% Similarity=1.282 Sum_probs=93.2
Q ss_pred CceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchhhhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCC
Q psy6496 26 GTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEP 105 (122)
Q Consensus 26 ~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~ 105 (122)
.++|+++||+++++++|++++++|++|++|++||++||.|++.+||+|||++.++|+|+|.+++++|++|++|+|+.+..
T Consensus 5 ~~~v~~~~Ilv~~~~~A~~i~~~l~~G~~F~~lA~~~S~d~a~~GGdlG~~~~~~l~~~f~~a~~~l~~G~vs~~~~~~~ 84 (101)
T 3ui4_A 5 SNAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDP 84 (101)
T ss_dssp GCEEEEEEEEESSHHHHHHHHHHHHTTCCHHHHHHHHCSSSGGGTTEEEEEETTSSCHHHHHHHHTSCCCBTTBCCBCSS
T ss_pred CcEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHhCcCchhcCCceeeEcCCCCCHHHHHHHHhCCCCCCccCcccCC
Confidence 57999999999999999999999999999999999999998889999999999999999999999999999998887777
Q ss_pred CeeeCceEEEEEEeeeC
Q psy6496 106 PIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 106 pi~s~~G~hIvkv~drr 122 (122)
||+|++|||||+|++||
T Consensus 85 pv~t~~G~hIikv~~rk 101 (101)
T 3ui4_A 85 PVKTKFGYHIIMVEGRK 101 (101)
T ss_dssp CEEETTEEEEEEEEEEC
T ss_pred cEEECCEEEEEEEEeeC
Confidence 99999999999999997
No 2
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=99.96 E-value=7.5e-29 Score=161.45 Aligned_cols=90 Identities=34% Similarity=0.606 Sum_probs=86.5
Q ss_pred ceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcch-hhhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCC
Q psy6496 27 TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEP 105 (122)
Q Consensus 27 ~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d-~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~ 105 (122)
++++++||+++++++|++++.+|++|++|+++|++||.+ ++.+||+|||++.++|+|+|.+++++|++|++|+
T Consensus 2 ~~~~~~hIl~~~~~~A~~i~~~l~~g~~F~~lA~~~S~~~s~~~gGdlg~~~~~~l~~~f~~a~~~l~~G~is~------ 75 (92)
T 1jns_A 2 KTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTG------ 75 (92)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEE------
T ss_pred CEEEEEEEEeCCHHHHHHHHHHHHCCCCHHHHHHHhCCCcchhcCCeeeEEcCcccCHHHHHHHHhCCCCCcCC------
Confidence 589999999999999999999999999999999999998 4679999999999999999999999999999998
Q ss_pred CeeeCceEEEEEEeeeC
Q psy6496 106 PIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 106 pi~s~~G~hIvkv~drr 122 (122)
||+|++|||||+|+++|
T Consensus 76 pv~t~~G~hIi~v~~~r 92 (92)
T 1jns_A 76 PLHTQFGYHIIKVLYRN 92 (92)
T ss_dssp EEEETTEEEEEEEECCC
T ss_pred cEEECCEEEEEEEEeeC
Confidence 99999999999999987
No 3
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}
Probab=99.95 E-value=7.4e-28 Score=158.21 Aligned_cols=93 Identities=42% Similarity=0.722 Sum_probs=87.7
Q ss_pred ccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcch--hhhcCCcccceeCCCCcHHHHHHHhcCCCCcccC
Q psy6496 22 QKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED--KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNN 99 (122)
Q Consensus 22 ~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d--~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~ 99 (122)
-++.+++++++||+++++++|++++.+|++|++|+++|++||.| ++.+||++||++.++|+|+|.+++++|++|+||+
T Consensus 3 ~~~~~~~~~~~hIl~~~~~~A~~i~~~l~~g~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~l~~G~is~ 82 (97)
T 2rqs_A 3 MGSMADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSE 82 (97)
T ss_dssp SCCCCCSEEEEEEEESCHHHHHHHHHHHTTTCCHHHHHHHTCCCCGGGGGTTEEEEECTTSSCHHHHHHHTTCTTSCBCC
T ss_pred cccccceEEEEEEEeCCHHHHHHHHHHHHCCCCHHHHHHHhCCCCcchhcCceeeeEcCCCCCHHHHHHHHcCCCCCccc
Confidence 36678999999999999999999999999999999999999965 4789999999999999999999999999999998
Q ss_pred CCCCCCCeeeCceEEEEEEee
Q psy6496 100 PVYTEPPIKTKFGYHIIMVEG 120 (122)
Q Consensus 100 ~~~~~~pi~s~~G~hIvkv~d 120 (122)
||+|++|||||+|.+
T Consensus 83 ------pv~t~~G~hIi~v~d 97 (97)
T 2rqs_A 83 ------PVKSEFGYHVIKRLG 97 (97)
T ss_dssp ------CEECSSCEEEEEECC
T ss_pred ------cEEECCEEEEEEEeC
Confidence 999999999999975
No 4
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=99.95 E-value=3.3e-28 Score=164.25 Aligned_cols=92 Identities=27% Similarity=0.487 Sum_probs=85.6
Q ss_pred CCceEEEEEEEecCH--------HHHHHHHHHhcCCCCHHHHHHHhcch-hhhcCCcccceeCCCCcHHHHHHHhcCCCC
Q psy6496 25 GGTAVKVRHILCEKQ--------SKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMVRGSMVGEFQDAAFKLPIS 95 (122)
Q Consensus 25 ~~~~v~v~~I~v~~~--------~~A~~i~~~l~~g~sF~~la~~~S~d-~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G 95 (122)
.+++|+++||+|++. ++|++++.+|++|++|++||++||.| ++.+||+|||++.++|+|+|.+++++|++|
T Consensus 4 ~~~~~~v~hIli~~~~~~~~~a~~~A~~i~~~l~~G~~F~~lA~~~S~d~sa~~GGdlG~~~~~~l~~~f~~a~~~l~~G 83 (112)
T 3gpk_A 4 GTEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASMGPG 83 (112)
T ss_dssp -CCEEEEEEEEEECCGGGHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHHHHCCTT
T ss_pred CCcEEEEEEEEEeCChhhHHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCcchhcCcccceEcccccCHHHHHHHHhCCCC
Confidence 468999999999853 67899999999999999999999998 478999999999999999999999999999
Q ss_pred cccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 96 TVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 96 ~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
+||+ ||+|++|||||+|.++|
T Consensus 84 eiS~------pv~t~~G~hIikv~~~~ 104 (112)
T 3gpk_A 84 QLAG------PVEIRGGFSILYLIDKR 104 (112)
T ss_dssp CEEE------EEEETTEEEEEEEEEEE
T ss_pred Cccc------eEEECCEEEEEEEEeEe
Confidence 9998 99999999999999985
No 5
>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}
Probab=99.95 E-value=7.7e-28 Score=161.67 Aligned_cols=93 Identities=37% Similarity=0.607 Sum_probs=85.8
Q ss_pred CCCceEEEEEEEecC---------HHHHHHHHHHhcCCC-CHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhc
Q psy6496 24 KGGTAVKVRHILCEK---------QSKVLEALEKLKSGV-KFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFK 91 (122)
Q Consensus 24 ~~~~~v~v~~I~v~~---------~~~A~~i~~~l~~g~-sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~ 91 (122)
...++|+++||+++. +.+|++++.+|++|. +|++||++||.|+ +.+||+|||+..+.|+|+|.+++++
T Consensus 4 ~~~~~v~~~hIli~~~~~~~~~~a~~~a~~i~~~l~~G~~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~ 83 (110)
T 4g2p_A 4 ISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTK 83 (110)
T ss_dssp CCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHT
T ss_pred ccccEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCccccccccccCeecccccCHHHHHHHHc
Confidence 456899999999973 456789999999998 9999999999984 6799999999999999999999999
Q ss_pred CCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 92 LPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 92 l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
|++|+||+ ||+|++|||||+|+++|
T Consensus 84 l~~Geis~------pv~t~~G~hIikv~~~r 108 (110)
T 4g2p_A 84 LHKGQISA------PVHSSFGWHLIELLDTR 108 (110)
T ss_dssp CCTTCBCC------CEEETTEEEEEEEEEEE
T ss_pred CCCCCcCc------cEEECCEEEEEEEEEEe
Confidence 99999998 99999999999999986
No 6
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=99.95 E-value=1.1e-27 Score=155.98 Aligned_cols=89 Identities=43% Similarity=0.764 Sum_probs=84.7
Q ss_pred CceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcch-hhhcCCccccee-CCCCcHHHHHHHhcCCCCcccCCCCC
Q psy6496 26 GTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMV-RGSMVGEFQDAAFKLPISTVNNPVYT 103 (122)
Q Consensus 26 ~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d-~~~~gG~lG~~~-~~~l~~~~~~a~~~l~~G~vs~~~~~ 103 (122)
+++++++||+++++++|++++.+|++|++|+++|++||.| ++.+||+|||++ .+.|+|+|.+++++|++|+||+
T Consensus 2 ~~~~~~~hIl~~~~~~A~~i~~~l~~g~~F~~lA~~~S~~~s~~~gG~lg~~~~~~~l~~~f~~a~~~l~~G~is~---- 77 (93)
T 1zk6_A 2 SGKIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSD---- 77 (93)
T ss_dssp -CCEEEEEEEESSHHHHHHHHHHHHHTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSCTTHHHHHHHSCTTCBCC----
T ss_pred CCEEEEEEEEeccHHHHHHHHHHHHCCCCHHHHHHHhCCCchhhhCCeeeeecccccCCHHHHHHHHcCCCCCccc----
Confidence 4789999999999999999999999999999999999998 478999999999 9999999999999999999998
Q ss_pred CCCeeeCceEEEEEEee
Q psy6496 104 EPPIKTKFGYHIIMVEG 120 (122)
Q Consensus 104 ~~pi~s~~G~hIvkv~d 120 (122)
||++++|||||+|.+
T Consensus 78 --pv~t~~G~hIi~v~~ 92 (93)
T 1zk6_A 78 --PVKTQYGYHIIKKTE 92 (93)
T ss_dssp --CEECSSCEEEEEEEE
T ss_pred --eEEECCEEEEEEEec
Confidence 999999999999986
No 7
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A
Probab=99.95 E-value=1.8e-27 Score=157.61 Aligned_cols=90 Identities=27% Similarity=0.489 Sum_probs=83.7
Q ss_pred ceEEEEEEEecC------------HHHHHHHHHHhcCCCCHHHHHHHhcch-hhhcCCcccceeCCCCcHHHHHHHhcCC
Q psy6496 27 TAVKVRHILCEK------------QSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMVRGSMVGEFQDAAFKLP 93 (122)
Q Consensus 27 ~~v~v~~I~v~~------------~~~A~~i~~~l~~g~sF~~la~~~S~d-~~~~gG~lG~~~~~~l~~~~~~a~~~l~ 93 (122)
++|+++||+++. +..|++++.+|++|.+|+++|++||.| ++.+||+|||++.+.|+|+|.+++++|+
T Consensus 1 ~~~~~~hIli~~~~~~~~~~~~~a~~~a~~i~~~l~~g~~F~~lA~~~S~~~s~~~gG~lg~~~~~~l~~~f~~a~~~l~ 80 (103)
T 2pv1_A 1 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAK 80 (103)
T ss_dssp CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHTTTCC
T ss_pred CcEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCcccccCCccceEchhhcCHHHHHHHHcCC
Confidence 369999999962 466899999999999999999999998 4689999999999999999999999999
Q ss_pred CCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 94 ISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 94 ~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
+|+||+ ||+|++|||||+|+++|
T Consensus 81 ~G~is~------pv~t~~G~hii~v~~~r 103 (103)
T 2pv1_A 81 KGDIVG------PIRSGVGFHILKVNDLR 103 (103)
T ss_dssp TTCEEE------EEEETTEEEEEEEEEEC
T ss_pred CCCeec------cEEECCEEEEEEEEEEC
Confidence 999998 99999999999999987
No 8
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Probab=99.95 E-value=4.5e-27 Score=161.05 Aligned_cols=95 Identities=35% Similarity=0.554 Sum_probs=80.7
Q ss_pred ccccCCCceEEEEEEEec-----------------CHHHHH----HHHHHhcCC-CCHHHHHHHhcch-hhhcCCcccce
Q psy6496 20 GKQKKGGTAVKVRHILCE-----------------KQSKVL----EALEKLKSG-VKFPEVASQYSED-KARQGGDLGWM 76 (122)
Q Consensus 20 ~~~~~~~~~v~v~~I~v~-----------------~~~~A~----~i~~~l~~g-~sF~~la~~~S~d-~~~~gG~lG~~ 76 (122)
+.+|..+++|+++||+|+ ++++|+ +++.+|++| .+|++||++||++ ++.+||+|||+
T Consensus 6 ~~~~~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~~sa~~GGdLG~~ 85 (123)
T 3i6c_A 6 KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAF 85 (123)
T ss_dssp -----CCSEEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEE
T ss_pred ccccCCCcEEEEEEEEEecCCccCccccchhhhhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCchhhhCCceeeE
Confidence 348899999999999997 234454 445688899 6999999999987 47899999999
Q ss_pred eCCCCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEee
Q psy6496 77 VRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120 (122)
Q Consensus 77 ~~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~d 120 (122)
..++|+|+|.+++|+|++|+||+ ||+|++|||||+|++
T Consensus 86 ~~~~l~~~f~~a~f~l~~GeiS~------pv~t~~G~hIi~v~E 123 (123)
T 3i6c_A 86 SRGQMQKPFEDASFALRTGEMSG------PVFTDSGIHIILRTE 123 (123)
T ss_dssp ETTTSCHHHHHHHHHSCTTCBCS------CEEETTEEEEEEECC
T ss_pred cCCCCCHHHHHHHHhCCCCCccc------cEEECCEEEEEEEeC
Confidence 99999999999999999999998 999999999999975
No 9
>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}
Probab=99.94 E-value=8.8e-27 Score=157.81 Aligned_cols=89 Identities=30% Similarity=0.444 Sum_probs=80.7
Q ss_pred CCceEEEEEEEecC-----------------------HHHHHHHHHHhcCCC-CHHHHHHHhcch-hhhcCCcccceeCC
Q psy6496 25 GGTAVKVRHILCEK-----------------------QSKVLEALEKLKSGV-KFPEVASQYSED-KARQGGDLGWMVRG 79 (122)
Q Consensus 25 ~~~~v~v~~I~v~~-----------------------~~~A~~i~~~l~~g~-sF~~la~~~S~d-~~~~gG~lG~~~~~ 79 (122)
.+++|+++||+|+. ...|++++.+|++|. +|+++|++||++ ++.+||+|||+..+
T Consensus 1 ~pe~vrasHILi~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~sa~~GGdLG~~~~~ 80 (115)
T 2lj4_A 1 MSEKLRAAHLLVKFSGSRNPVSRRTGDSTADVTYEDAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSG 80 (115)
T ss_dssp CCCEEEEEEEEECCTTSSCCCCTTTSSCCTTSCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGTTSEEEEEETT
T ss_pred CCCcEEEEEEEEecCCccChhhhhhccccccccHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCcccccCCccceecCC
Confidence 37899999999951 245788999999995 999999999987 57899999999999
Q ss_pred CCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEe
Q psy6496 80 SMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 119 (122)
Q Consensus 80 ~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~ 119 (122)
+|+|+|.+++++|++|+||+ ||+|++|||||+|+
T Consensus 81 ~~~~~f~~a~~~l~~GeiS~------pv~t~~G~HIIkl~ 114 (115)
T 2lj4_A 81 EMMKPFEDAVRALKIGDISP------IVQTDSGLHIIKRL 114 (115)
T ss_dssp SSCHHHHHHHTTSCBTCBCC------CEECSSSEEEEEEC
T ss_pred CCCchHHHHHhcCCCCCCCC------cEEeCCeEEEEEEe
Confidence 99999999999999999998 99999999999986
No 10
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}
Probab=99.94 E-value=4e-26 Score=153.01 Aligned_cols=90 Identities=34% Similarity=0.596 Sum_probs=83.7
Q ss_pred CCceEEEEEEEec---------------CHHHHHHHHHHhcCC-CCHHHHHHHhcchh--hhcCCcccceeCCCCcHHHH
Q psy6496 25 GGTAVKVRHILCE---------------KQSKVLEALEKLKSG-VKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQ 86 (122)
Q Consensus 25 ~~~~v~v~~I~v~---------------~~~~A~~i~~~l~~g-~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~ 86 (122)
.+++|+++||+++ ++++|++++.+|++| .+|+++|++||.|+ +.+||+|||+..+.|+++|.
T Consensus 4 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~lA~~~S~d~~s~~~gG~lG~~~~~~l~~~f~ 83 (111)
T 2jzv_A 4 GSDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFE 83 (111)
T ss_dssp CCSEEEEEEEEEEBCSCSSCSSSBCHHHHHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEEETTSSCHHHH
T ss_pred CCcEEEEEEEEEECCCCCChhhhhhHHHHHHHHHHHHHHHHcCcccHHHHHHHHCCCcchhhhCCccceecCCcccHHHH
Confidence 4689999999997 456789999999999 89999999999984 67899999999999999999
Q ss_pred HHHhcCCCCcccCCCCCCCCeeeCceEEEEEEee
Q psy6496 87 DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120 (122)
Q Consensus 87 ~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~d 120 (122)
+++++|++|+||+ ||+|++|||||+|++
T Consensus 84 ~a~~~l~~G~is~------pv~t~~G~hIi~v~~ 111 (111)
T 2jzv_A 84 KALFKLKDGEVSE------VVKSSFGYHIIKADK 111 (111)
T ss_dssp HHHHTCCTTCBCC------CEEETTEEEEEEECC
T ss_pred HHHHhCCCCCcCc------cEEECCEEEEEEEeC
Confidence 9999999999998 999999999999974
No 11
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}
Probab=99.94 E-value=1e-26 Score=154.29 Aligned_cols=89 Identities=25% Similarity=0.512 Sum_probs=84.5
Q ss_pred ceEEEEEEEe--cCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCC
Q psy6496 27 TAVKVRHILC--EKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVY 102 (122)
Q Consensus 27 ~~v~v~~I~v--~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~ 102 (122)
++++++||++ .++++|++++.+|++|++|++||++||.|+ +.+||+|||++.+.|+|+|.+++++ ++|+||+
T Consensus 2 ~~~~~~hIl~~~~~~~~A~~i~~~l~~G~~F~~lA~~~S~d~~sa~~GGdlG~~~~~~l~~~f~~a~~~-~~GeiS~--- 77 (102)
T 2kgj_A 2 QPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLK-EKGQLSG--- 77 (102)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHHHHHTSCHHHHHHHTCTTHHHHTTTSEEEEEETTCCCHHHHTTCCC-STTCEEE---
T ss_pred CEEEEEeeecChhhHHHHHHHHHHHHCCCCHHHHHHHhCCCchhhhcCCccceecccccCHHHHHHHhc-CCCCccc---
Confidence 5799999999 789999999999999999999999999985 6799999999999999999999999 9999998
Q ss_pred CCCCeeeCceEEEEEEeeeC
Q psy6496 103 TEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 103 ~~~pi~s~~G~hIvkv~drr 122 (122)
||+|++|||||+|.+++
T Consensus 78 ---pv~t~~G~hIikv~~~~ 94 (102)
T 2kgj_A 78 ---VIKSSVGFLIVRLDDIQ 94 (102)
T ss_dssp ---EEEETTEEEEEEEEEEE
T ss_pred ---cEEECCEEEEEEEeecc
Confidence 99999999999999875
No 12
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=99.93 E-value=2.1e-25 Score=159.66 Aligned_cols=94 Identities=35% Similarity=0.579 Sum_probs=80.9
Q ss_pred cccCCCceEEEEEEEec-----------------CHHHHHHHH----HHhcCC-CCHHHHHHHhcch-hhhcCCccccee
Q psy6496 21 KQKKGGTAVKVRHILCE-----------------KQSKVLEAL----EKLKSG-VKFPEVASQYSED-KARQGGDLGWMV 77 (122)
Q Consensus 21 ~~~~~~~~v~v~~I~v~-----------------~~~~A~~i~----~~l~~g-~sF~~la~~~S~d-~~~~gG~lG~~~ 77 (122)
..+..+++|+++||+|+ ++++|++++ .+|++| .+|++||++||++ ++.+||+|||+.
T Consensus 50 ~~~~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~~Sd~~sa~~GGdLG~~~ 129 (166)
T 3tc5_A 50 NGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFS 129 (166)
T ss_dssp ----CCSCEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEEC
T ss_pred cccccccceeEeeeEEecccccCccccchhhhhhHHHHHHHHHHHHHHHHHcCccCHHHHHHHhCcccHHhcCCccceec
Confidence 35667899999999998 345565554 588889 6999999999987 578999999999
Q ss_pred CCCCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEee
Q psy6496 78 RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120 (122)
Q Consensus 78 ~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~d 120 (122)
.++|+++|.+++|+|++|+||+ ||+|++|||||+|++
T Consensus 130 ~~~l~~~f~~a~f~l~~GeiS~------pv~t~~G~hIi~v~e 166 (166)
T 3tc5_A 130 RGQMQKPFEDASFALRTGEMSG------PVFTDSGIHIILRTE 166 (166)
T ss_dssp TTSSCHHHHHHHHHSCTTCBCC------CEEETTEEEEEEECC
T ss_pred ccccCHHHHHHHHhCCCCCCcc------cEEECCEEEEEEEeC
Confidence 9999999999999999999998 999999999999975
No 13
>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1
Probab=99.92 E-value=7.7e-26 Score=157.64 Aligned_cols=99 Identities=32% Similarity=0.494 Sum_probs=84.1
Q ss_pred cccccccccCCCceEEEEEEEecCH-------------------------HHHHHHHHHhcCCC-CHHHHHHHhcch-hh
Q psy6496 15 EEDSSGKQKKGGTAVKVRHILCEKQ-------------------------SKVLEALEKLKSGV-KFPEVASQYSED-KA 67 (122)
Q Consensus 15 ~~~~~~~~~~~~~~v~v~~I~v~~~-------------------------~~A~~i~~~l~~g~-sF~~la~~~S~d-~~ 67 (122)
-++++...|..+++|+++||+|+.. +.|++++.+|++|. +|++||++||.+ ++
T Consensus 13 ~~~~~~~~f~~~~~v~~~HILi~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~a~~i~~~l~~G~~~F~~lA~~~S~~~sa 92 (139)
T 1j6y_A 13 GLVPRGSHMASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSA 92 (139)
T ss_dssp -------CCSSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHHHH
T ss_pred hHHHhHHHcCCCCeEEEEEEEEecCccccccccccccccccchHHHHHHHHHHHHHHHHHHcCcccHHHHHHHhccCchh
Confidence 3678899999999999999999731 23568899999998 799999999997 47
Q ss_pred hcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEe
Q psy6496 68 RQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 119 (122)
Q Consensus 68 ~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~ 119 (122)
.+||+|||+..++|+|+|.+++++|++|+||+ ||+|++|||||+|+
T Consensus 93 ~~GGdLG~~~~~~l~~~f~~a~~~l~~GeiS~------pv~t~~G~hIikv~ 138 (139)
T 1j6y_A 93 KRGGDLGSFGRGQMQKPFEEATYALKVGDISD------IVDTDSGVHIIKRT 138 (139)
T ss_dssp HTCSEEEECSSSSSCTHHHHHHHHCCSSSCCS------CEEETTEEECCCSC
T ss_pred hcCCeeeeecccccCHHHHHHHHcCCCCCccc------cEEECCEEEEEEEe
Confidence 89999999999999999999999999999998 99999999999986
No 14
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=99.91 E-value=1.4e-24 Score=156.43 Aligned_cols=99 Identities=32% Similarity=0.519 Sum_probs=86.6
Q ss_pred cccccccc-----CCCceEEEEEEEecC------------------HHHH----HHHHHHhcCCC-CHHHHHHHhcch-h
Q psy6496 16 EDSSGKQK-----KGGTAVKVRHILCEK------------------QSKV----LEALEKLKSGV-KFPEVASQYSED-K 66 (122)
Q Consensus 16 ~~~~~~~~-----~~~~~v~v~~I~v~~------------------~~~A----~~i~~~l~~g~-sF~~la~~~S~d-~ 66 (122)
++++..+| ..+++++++||+|+. ++.| +.++.+|++|. +|++||++||.| +
T Consensus 50 y~~~~~~~~~~~~~~~~~~~~~hIlv~~~~~~~p~~~~~~~~~~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~~s 129 (177)
T 1yw5_A 50 IAKFKNNGYKPLVNEDGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTESDCSS 129 (177)
T ss_dssp HHHHHHTTSCCCCCTTSCEEEEEEEECCTTSSSCCBTTBTTCCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGG
T ss_pred HHHhHhhhcccccCCcceEEEEEEEEecCCccCcccccccccchhHHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCcc
Confidence 45566677 688999999999974 3444 55678889997 899999999998 4
Q ss_pred hhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEee
Q psy6496 67 ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120 (122)
Q Consensus 67 ~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~d 120 (122)
+.+||+|||+..++|+++|.+++|+|++|+||+ ||+|++|||||+|++
T Consensus 130 a~~GGdLG~~~~~~l~~~f~~a~f~L~~GeiS~------pv~t~~G~hIikv~~ 177 (177)
T 1yw5_A 130 HDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSN------IIETNSGVHILQRTG 177 (177)
T ss_dssp GGGTTEEEEECTTSSCHHHHHHHHTSCTTCBCC------CEEETTEEEEEEECC
T ss_pred hhcCCccceecccccCHHHHHHHHcCCCCCcCC------eEEECCEEEEEEEeC
Confidence 789999999999999999999999999999998 999999999999974
No 15
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=99.90 E-value=5.9e-24 Score=159.22 Aligned_cols=103 Identities=37% Similarity=0.645 Sum_probs=94.0
Q ss_pred ccccccccccCCCceEEEEEEEecCHHHHHHHHHHhc--CC----CCHHHHHHHhcchh--hhcCCcccceeCCCCcHHH
Q psy6496 14 KEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLK--SG----VKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEF 85 (122)
Q Consensus 14 ~~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~--~g----~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~ 85 (122)
+-++++...|..+++++++||++++++.|++++.+|+ +| .+|+++|++||.|+ ..+||++||++.++|+|+|
T Consensus 98 ~~Y~~~~~~f~~~~~~~~~~I~~~~~~~A~~~~~~l~~~~g~~~~~~F~~lA~~~S~~~~~~~~gGdlg~~~~~~l~~~f 177 (252)
T 3rfw_A 98 AFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPF 177 (252)
T ss_dssp HHHHHHGGGSEECCEEEEEEEEESSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCTTTGGGTTEEEEECSSSSCHHH
T ss_pred HHHHHhHHhccccceEEEEEEEeCCHHHHHHHHHHHHhhcCCCccccHHHHHHHhCCCCchhhcCCcccccccccccHHH
Confidence 3466778889999999999999999999999999999 45 49999999999985 3469999999999999999
Q ss_pred HHHHhcCCCCccc-CCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 86 QDAAFKLPISTVN-NPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 86 ~~a~~~l~~G~vs-~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
.+++++|++|++| . ||+|++|||||+|++++
T Consensus 178 ~~a~~~l~~G~is~~------pv~t~~G~hii~v~~~~ 209 (252)
T 3rfw_A 178 TDAAFALKNGTITTT------PVKTNFGYHVILKENSQ 209 (252)
T ss_dssp HHHHHHSCTTEECSS------CEEETTEEEEEEEEEEE
T ss_pred HHHHHcCCCCCccCc------eEEECCEEEEEEEEEec
Confidence 9999999999999 7 99999999999999874
No 16
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=99.85 E-value=4e-22 Score=154.61 Aligned_cols=91 Identities=22% Similarity=0.293 Sum_probs=84.5
Q ss_pred CceEEEEEEEe-----------cCHHHHHHHHHH-hcCCCCHHHHHHHhcchh--hhcCCcccceeCCCCc---HHHHHH
Q psy6496 26 GTAVKVRHILC-----------EKQSKVLEALEK-LKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMV---GEFQDA 88 (122)
Q Consensus 26 ~~~v~v~~I~v-----------~~~~~A~~i~~~-l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~---~~~~~a 88 (122)
+..++++||++ .+++.|++++.+ |++|.+|+++|++||.|+ +.+||++||++.+.|+ |+|.++
T Consensus 157 ~~~~~~~~Ili~~~~~~~~~~~~~~~~a~~i~~~~l~~g~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~~~~a 236 (325)
T 3nrk_A 157 GFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATI 236 (325)
T ss_dssp CEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSTTSCHHHHHTTTEEEEEEHHHHHHHCHHHHHH
T ss_pred CcceEEEEEEEecCCCCccchHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCccccccCCcccccccccccccCHHHHHH
Confidence 56799999999 567789999999 999999999999999984 4799999999999999 999999
Q ss_pred HhcCCCCcccCCCCCCCCeeeCc-eEEEEEEeeeC
Q psy6496 89 AFKLPISTVNNPVYTEPPIKTKF-GYHIIMVEGKK 122 (122)
Q Consensus 89 ~~~l~~G~vs~~~~~~~pi~s~~-G~hIvkv~drr 122 (122)
+++|++|+||+ ||++++ |||||+|++++
T Consensus 237 ~~~l~~Geis~------pv~t~~~G~hIikv~~~~ 265 (325)
T 3nrk_A 237 AAPLPNGGVSE------VFRDERKRYCILKIEGKR 265 (325)
T ss_dssp HTTCCTTCBCC------CEECTTSCEEEEEEEEEE
T ss_pred HHcCCCCCCCc------eEEeCCCeEEEEEEeccC
Confidence 99999999998 999999 99999999874
No 17
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=99.83 E-value=8.5e-21 Score=149.65 Aligned_cols=102 Identities=25% Similarity=0.463 Sum_probs=87.0
Q ss_pred cccccccccCCCceEEEEEEEecC------------HHHHHHHHHHhcCCCCHHHHHHHhcchh-hhcCCcccceeCCCC
Q psy6496 15 EEDSSGKQKKGGTAVKVRHILCEK------------QSKVLEALEKLKSGVKFPEVASQYSEDK-ARQGGDLGWMVRGSM 81 (122)
Q Consensus 15 ~~~~~~~~~~~~~~v~v~~I~v~~------------~~~A~~i~~~l~~g~sF~~la~~~S~d~-~~~gG~lG~~~~~~l 81 (122)
-++.+..+|..+++++++||+++. +..|++++.+|++|.+|+++|+.||.++ +.+||++||++.+.|
T Consensus 140 ~y~~~~~~~~~~~~~~~~~i~i~~~~~~s~~~~~~~~~~a~~~~~~l~~g~~F~~lA~~~S~~~~~~~gG~lg~~~~~~l 219 (408)
T 1m5y_A 140 LAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQEL 219 (408)
T ss_dssp HHHCC-------CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGS
T ss_pred HHHhhhhhcCCcccEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHcCCCcccccCCcccccchhhc
Confidence 355667788899999999999962 4568899999999999999999999984 679999999999999
Q ss_pred cHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 82 VGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 82 ~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
||.|.++++.|++|++|+ ||++++||||++|.+++
T Consensus 220 ~~~~~~~~~~l~~G~vs~------pv~~~~g~~iikv~~~~ 254 (408)
T 1m5y_A 220 PGIFAQALSTAKKGDIVG------PIRSGVGFHILKVNDLR 254 (408)
T ss_dssp CHHHHTGGGTCCTTCEEE------EEEETTEEEEEEEEEEC
T ss_pred cHHHHHHHHhCCCCCccC------eeecCCeEEEEEEEEec
Confidence 999999999999999998 99999999999999875
No 18
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=99.79 E-value=5.4e-19 Score=139.33 Aligned_cols=95 Identities=33% Similarity=0.586 Sum_probs=85.3
Q ss_pred ccCCCceEEEEEEEecC---------HHHHHHHHHHhcCCC-CHHHHHHHhcch--hhhcCCcccceeCCCCcHHHHHHH
Q psy6496 22 QKKGGTAVKVRHILCEK---------QSKVLEALEKLKSGV-KFPEVASQYSED--KARQGGDLGWMVRGSMVGEFQDAA 89 (122)
Q Consensus 22 ~~~~~~~v~v~~I~v~~---------~~~A~~i~~~l~~g~-sF~~la~~~S~d--~~~~gG~lG~~~~~~l~~~~~~a~ 89 (122)
.....++++++||++.. .+.|.+++.+|++|. +|+++|++||.+ ++.+||++||++.+.++|+|.+++
T Consensus 258 ~~~~~~~~~~~~Il~~~~~~~~~~~a~~~a~~~~~~l~~g~~~f~~~A~~~s~~~~s~~~gg~lg~~~~~~~~~~~~~a~ 337 (408)
T 1m5y_A 258 KNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDAL 337 (408)
T ss_dssp CCCCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHH
T ss_pred CcccccchhhheeeecCCCCcCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCcchhhcCCcCcccCcccchHHHHHHH
Confidence 34456889999999973 355788999999998 999999999998 467899999999999999999999
Q ss_pred hcCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 90 FKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 90 ~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
|+|++|++|+ ||++++|||||+|++++
T Consensus 338 f~l~~G~~s~------~v~~~~g~~ii~v~~~~ 364 (408)
T 1m5y_A 338 TRLNKGQMSA------PVHSSFGWHLIELLDTR 364 (408)
T ss_dssp HTCCTTCBCC------CEECSSCEEEEEEEEEE
T ss_pred HcCCCCCccC------cEeeCCeEEEEEEeeec
Confidence 9999999998 99999999999999874
No 19
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=99.70 E-value=1.3e-17 Score=124.57 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=76.0
Q ss_pred cccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchhhhcCCcccceeCCCCcHHHHHHHhcCCC
Q psy6496 15 EEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPI 94 (122)
Q Consensus 15 ~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~~~~gG~lG~~~~~~l~~~~~~a~~~l~~ 94 (122)
-++++..+|..+++|+++||++.+++ ++.+|++|.+|+ .+|++||++.+.|||+|.+++++|++
T Consensus 122 yy~~~~~~f~~~~~v~~~~i~~~~~~----~~~~l~~g~~f~------------l~g~lg~~~~~~l~~~~~~a~~~l~~ 185 (252)
T 3rgc_A 122 FFEQNKDKFTFYTQINANIYLSNNPQ----TLENIKNTKKTI------------LKPQNASLNTSNADPRLLGLLSQIPV 185 (252)
T ss_dssp HHHTCGGGCCEESEEEEEEEECSCHH----HHHHHHHHCCCC------------SCCEEEEEETTTSCHHHHHHHHHSCT
T ss_pred HHHhCHHhcCCCceEEEEEecCCCHH----HHHHHHhCCCcc------------cccccceecHHhcCHHHHHHHHcCCC
Confidence 46778888999999999999998754 456677788886 26899999999999999999999999
Q ss_pred CcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496 95 STVNNPVYTEPPIKTKFGYHIIMVEGKK 122 (122)
Q Consensus 95 G~vs~~~~~~~pi~s~~G~hIvkv~drr 122 (122)
|++|+ ||++++|||||+|++++
T Consensus 186 G~is~------pv~t~~G~hiikv~~~~ 207 (252)
T 3rgc_A 186 GSFSP------VLNGKNGYELYEVKSKD 207 (252)
T ss_dssp TCBCC------CBTTTTCEEEEEEEECS
T ss_pred CCcCC------cEEeCCeEEEEEEeccc
Confidence 99998 99999999999999875
No 20
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=30.32 E-value=63 Score=19.19 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHhcCC-CCHHHHHHHhcch
Q psy6496 38 KQSKVLEALEKLKSG-VKFPEVASQYSED 65 (122)
Q Consensus 38 ~~~~A~~i~~~l~~g-~sF~~la~~~S~d 65 (122)
+++....+++++++| .+...+|+.|...
T Consensus 15 te~~L~~Ai~aVr~g~mS~~~Aak~yGVP 43 (70)
T 2cob_A 15 NSEILEEAISVVMSGKMSVSKAQSIYGIP 43 (70)
T ss_dssp CHHHHHHHHHHHHTTSSCHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHcCCccHHHHHHHhCCC
Confidence 457788888899999 6999999999875
No 21
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=21.62 E-value=95 Score=20.20 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCCcccCCCCCCCCeeeCce----EEEEEEe
Q psy6496 83 GEFQDAAFKLPISTVNNPVYTEPPIKTKFG----YHIIMVE 119 (122)
Q Consensus 83 ~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G----~hIvkv~ 119 (122)
..+..++...++|+.. -+.++.| |.|+.|.
T Consensus 92 SPlG~ALlGk~~GD~v-------~v~~p~G~~~~~~I~~I~ 125 (136)
T 3bmb_A 92 APVGAALLGLRVGDSI-------HWELPGGVATHLEVLELE 125 (136)
T ss_dssp SHHHHHHTTCBTTCEE-------EEEETTTEEEEEEEEEEE
T ss_pred CHHHHHHcCCCCCCEE-------EEEcCCCCEEEEEEEEEE
Confidence 5799999999999987 4788888 5555543
No 22
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=20.35 E-value=1.1e+02 Score=21.08 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhcchh-hhcCCcccceeCCCCcHHHHHHHhc
Q psy6496 40 SKVLEALEKLKSGVKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQDAAFK 91 (122)
Q Consensus 40 ~~A~~i~~~l~~g~sF~~la~~~S~d~-~~~gG~lG~~~~~~l~~~~~~a~~~ 91 (122)
+.|..+...+..|.+-.++|+.+.... ... .++.+..|||.+..++..
T Consensus 40 E~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~----~~LrLl~Lp~~v~~~v~~ 88 (178)
T 1r71_A 40 EIADFIGRELAKGKKKGDIAKEIGKSPAFIT----QHVTLLDLPEKIADAFNT 88 (178)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHH----HHHGGGSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHH----HHHHHHcCCHHHHHHHHc
Confidence 556666666667888899998877652 222 245666789998888765
Done!