RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6496
(122 letters)
>gnl|CDD|216038 pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamases increase
the rate of protein folding by catalyzing the
interconversion of cis-proline and trans-proline.
Length = 94
Score = 77.3 bits (191), Expect = 7e-20
Identities = 40/100 (40%), Positives = 51/100 (51%), Gaps = 18/100 (18%)
Query: 33 HILCEKQSKVL---------EALEKLKSGV-KFPEVASQYSEDK--ARQGGDLGWMVRGS 80
HIL + E LE+L+SG F E+A +YS+D A GGDLGW RG
Sbjct: 1 HILIKPPESADRAAAKAKAEEILEQLQSGEDTFAELAREYSDDCPSAANGGDLGWFTRGQ 60
Query: 81 MVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120
+ EF+DAAF L + P++T FGYHII V
Sbjct: 61 LPPEFEDAAFSLKEGEI------SGPVETPFGYHIIKVTD 94
>gnl|CDD|222266 pfam13616, Rotamase_3, PPIC-type PPIASE domain. Rotamases increase
the rate of protein folding by catalyzing the
interconversion of cis-proline and trans-proline.
Length = 114
Score = 75.4 bits (186), Expect = 6e-19
Identities = 42/106 (39%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 29 VKVRHILCEKQSKVLEA---------LEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMV 77
VKVRHIL +A LK G F +A +YS+D QGGDLGW
Sbjct: 16 VKVRHILVAYAGAQRKAEAKALADSIYNALKGGADFAALAKKYSDDPGSKAQGGDLGWFT 75
Query: 78 -RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
G MV EF DA F L + + ++T FGYHII V KK
Sbjct: 76 ASGQMVKEFIDALFTLKVGEIG-------VVETPFGYHIIQVTDKK 114
>gnl|CDD|179522 PRK02998, prsA, peptidylprolyl isomerase; Reviewed.
Length = 283
Score = 65.4 bits (159), Expect = 8e-14
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 29 VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKA--RQGGDLGWMVRGSMVGEFQ 86
+KV HIL + + E EK+ +G F +A QYSED QGG++ G V EF+
Sbjct: 135 MKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFE 194
Query: 87 DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
+AA+KL V+ PV KT +GYHII V KK
Sbjct: 195 EAAYKLDAGQVSEPV------KTTYGYHIIKVTDKK 224
>gnl|CDD|101162 PRK03002, prsA, peptidylprolyl isomerase; Reviewed.
Length = 285
Score = 63.8 bits (155), Expect = 3e-13
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 29 VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKA--RQGGDLGWMVRGSMVGEFQ 86
+K HIL +++ E +KL +G F E+A Q S+D +GGDLG+ G M EF+
Sbjct: 137 IKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFE 196
Query: 87 DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
AA+KL + ++NPV K+ GYHII + KK
Sbjct: 197 TAAYKLKVGQISNPV------KSPNGYHIIKLTDKK 226
>gnl|CDD|179537 PRK03095, prsA, peptidylprolyl isomerase; Reviewed.
Length = 287
Score = 61.9 bits (150), Expect = 1e-12
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Query: 4 KKGSGKSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYS 63
+K K+ DKE + K + +K HIL + ++ + E+L G F E+A QYS
Sbjct: 113 EKAIEKTITDKELKDNYKPE-----IKASHILVKDEATAKKVKEELGQGKSFEELAKQYS 167
Query: 64 EDKA--RQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMV 118
ED +GGDLG+ G MV EF+DAA+KL V+ PV K++FGYHII V
Sbjct: 168 EDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPV------KSQFGYHIIKV 218
>gnl|CDD|223831 COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase
[Posttranslational modification, protein turnover,
chaperones].
Length = 320
Score = 60.5 bits (146), Expect = 5e-12
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 13/121 (10%)
Query: 9 KSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLK-----SGVKFPEVASQYS 63
++ +++ + +Q K T V+ RHIL + ++K EAL LK + F E+A + S
Sbjct: 149 EAEALRDKLQNKQQGKKVTEVQARHILVKAEAKAKEALALLKKGVREAKADFAELAKKQS 208
Query: 64 ED--KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 121
ED GG LGW +G +V EF+ AAF L + P+KT FGYHII VE K
Sbjct: 209 EDPSSKNGGGLLGWNKKGQLVPEFRKAAFILK-----VGEVSA-PVKTSFGYHIIKVEKK 262
Query: 122 K 122
+
Sbjct: 263 R 263
>gnl|CDD|185573 PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isomerase (PPIase);
Provisional.
Length = 115
Score = 56.2 bits (136), Expect = 2e-11
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 50 KSGVKFPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIK 108
F E+A Q S+ A +GGDLG+ RG M F+DAAF L + +++ V+T+
Sbjct: 50 SGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQMQKPFEDAAFALKVGEISDIVHTDS--- 106
Query: 109 TKFGYHII 116
G HII
Sbjct: 107 ---GVHII 111
>gnl|CDD|185338 PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C;
Provisional.
Length = 93
Score = 51.6 bits (123), Expect = 7e-10
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 33 HILCEKQSKVLEALEKLKSGVKFPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFK 91
HIL +++ L+ LE++K+G F ++A ++S ++GGDLG +G MV F F
Sbjct: 9 HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFS 68
Query: 92 LPISTVNNPVYTEPPIKTKFGYHIIMV 118
P+ + P+ T+FGYHII V
Sbjct: 69 CPV------LEPTGPLHTQFGYHIIKV 89
>gnl|CDD|236758 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA;
Provisional.
Length = 413
Score = 54.7 bits (132), Expect = 7e-10
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 20 GKQKKGGTAVKVRHILC---------EKQSKVLEALEKLKSG-VKFPEVASQYSED--KA 67
Q T V RHIL + ++K+ + +KSG F A ++S+D A
Sbjct: 258 ESQNISVTEVHARHILLKPSPIMTDEQARAKLEQIAADIKSGKTTFAAAAKEFSQDPGSA 317
Query: 68 RQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
QGGDLGW F+DA +L ++ PV++ FG+H+I
Sbjct: 318 NQGGDLGWATPDIFDPAFRDALMRLNKGQISAPVHSS------FGWHLI 360
Score = 35.5 bits (82), Expect = 0.003
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 25/115 (21%)
Query: 20 GKQKKGGTAVKVRHIL-----------CEKQSKVLEAL-EKLKSGVKFPEVASQYSED-K 66
G Q T + + HIL ++ ++ ++ ++G F ++A YS D +
Sbjct: 147 GNQNDASTELNLSHILIPLPENPTQDQVDEAESQARSIVDQARNGADFGKLAIAYSADQQ 206
Query: 67 ARQGGDLGWMVRGSMVGEFQDA---AFKLPISTVNNPVYTEPPIKTKFGYHIIMV 118
A +GG +GW + G F A A K I PI++ G+HI+ V
Sbjct: 207 ALKGGQMGWGRIQELPGLFAQALSTAKKGDIVG---------PIRSGVGFHILKV 252
>gnl|CDD|234605 PRK00059, prsA, peptidylprolyl isomerase; Provisional.
Length = 336
Score = 53.2 bits (128), Expect = 2e-09
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 5 KGSGKSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSE 64
K + K ++ ++ K + + + HIL + + + + ++L G F +VA + S+
Sbjct: 173 KVTDKDAQKYYNENKSKFTEKPNTMHLAHILVKTEDEAKKVKKRLDKGEDFAKVAKEVSQ 232
Query: 65 DKA--RQGGDLGWM--VRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120
D +GGDLG + EF D A L ++ PV KT+FGYHII
Sbjct: 233 DPGSKDKGGDLGDVPYSDSGYDKEFMDGAKALKEGEISAPV------KTQFGYHIIKAIK 286
Query: 121 KK 122
KK
Sbjct: 287 KK 288
>gnl|CDD|235295 PRK04405, prsA, peptidylprolyl isomerase; Provisional.
Length = 298
Score = 51.7 bits (124), Expect = 8e-09
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 29 VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKA--RQGGDLGW--MVRGSMVGE 84
V V+HIL K+S ++KLK G F ++A +YS D A +GG L ++
Sbjct: 145 VTVQHILVSKKSTAETVIKKLKDGKDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDST 204
Query: 85 FQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
F+ AAFKL N YT P+KT +GY +I
Sbjct: 205 FKTAAFKL-----KNGEYTTTPVKTTYGYEVI 231
>gnl|CDD|131979 TIGR02933, nifM_nitrog, nitrogen fixation protein NifM. Members of
this protein family, found in a subset of
nitrogen-fixing bacteria, are the nitrogen fixation
protein NifM. NifM, homologous to peptidyl-prolyl
cis-trans isomerases, appears to be an accessory protein
for NifH, the Fe protein, also called component II or
dinitrogenase reductase, of nitrogenase [Central
intermediary metabolism, Nitrogen fixation].
Length = 256
Score = 46.8 bits (111), Expect = 3e-07
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Query: 32 RHILC-------EKQSKVLEALEK-LKSG-VKFPEVASQYSE-DKARQGGDLGWMVRGSM 81
RH+L E + A+ + L+ F E A ++S A +GG LGW+ RG +
Sbjct: 127 RHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGLLGWVSRGLL 186
Query: 82 VGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 119
+ A F+L ++ PPI+++ G+H+++ E
Sbjct: 187 YPQLDAALFQLAEGELS------PPIESEIGWHLLLCE 218
>gnl|CDD|182731 PRK10788, PRK10788, periplasmic folding chaperone; Provisional.
Length = 623
Score = 44.6 bits (106), Expect = 2e-06
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 44 EALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFK 91
L++LK G F +A + S D AR GGDLGW+ + E ++A K
Sbjct: 286 AVLDELKKGADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGLK 335
>gnl|CDD|221934 pfam13145, Rotamase_2, PPIC-type PPIASE domain.
Length = 121
Score = 36.3 bits (84), Expect = 9e-04
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 37 EKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVG-EFQDAAFKLPIS 95
E + AL K K+G F +A D DL S + E +A F L
Sbjct: 33 EVAADAAAALLKGKAGEDFAALAKGEGID----ATDLDLFESDSDLPEELAEALFALKPG 88
Query: 96 TVNNPVYTEPPIKTKFGYHIIMVEGKK 122
V PI++ GY+++ V
Sbjct: 89 EV------SGPIESDNGYYLVRVTEIL 109
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 28.4 bits (64), Expect = 0.84
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 16/56 (28%)
Query: 26 GTAVKVRHILCEKQSKVLEALEKLK--SGVKFPEVASQYSEDKARQGGDLGWMVRG 79
G ++ ++L E ++ +L ALE GV+ R+ GD W+V G
Sbjct: 318 GDGIQDAYVLGEDEALLLRALETFTDEDGVE-------------REPGDR-WLVHG 359
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 27.5 bits (61), Expect = 1.8
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 2 GPKKGSGKSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSK-----VLEALEKLKSGVKFP 56
P GK K+KE +S + +G + R I KQ + ++ +E + VKF
Sbjct: 338 VPVMFLGKKPKEKEVESKSQCIEGIS----RLICSAKQQQTMLRVSIDGVE--WNDVKFF 391
Query: 57 EVASQYS 63
++A+Q+
Sbjct: 392 QLAAQWQ 398
>gnl|CDD|132141 TIGR03097, PEP_O_lig_1, probable O-glycosylation ligase, exosortase
A-associated. These proteins are members of the
O-antigen polymerase (wzy) family described by
pfam04932. This group is associated with genomes and
ususally genomic contexts containing elements of the
exosortase/PEP-CTERM protein export system ,
specificially the type 1 variety of this system
described by the Genome Property, GenProp0652.
Length = 402
Score = 27.0 bits (60), Expect = 2.5
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 66 KARQGGDLGWMVRGSMVGEFQDAAF 90
+ + DL M++ S+VG AF
Sbjct: 359 ELKWAVDLAAMLQVSLVGYAVGGAF 383
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 26.4 bits (59), Expect = 3.6
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 42 VLEALEKLKSGVKFPEVASQYSEDKARQGGD 72
+LEAL V PE +Y E++ GGD
Sbjct: 15 LLEALAARGYPV-VPEYGREYIEEQLADGGD 44
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 25.8 bits (57), Expect = 4.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 1 MGPKKGSGKSSKDKEEDSSGKQKK 24
M PKK K++K + GK KK
Sbjct: 1 MPPKKQQKKAAKAAAASAGGKAKK 24
>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2.
Length = 190
Score = 25.5 bits (56), Expect = 6.9
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 25 GGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQY 62
GG +K + K SK+ + L G+ P A++Y
Sbjct: 90 GGKIIKAPKPMHGKTSKIYHNHDDLFQGLPNPFTATRY 127
>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 25.4 bits (56), Expect = 8.2
Identities = 9/12 (75%), Positives = 9/12 (75%), Gaps = 1/12 (8%)
Query: 70 GGDLGWMVRGSM 81
GGDLGWM R M
Sbjct: 65 GGDLGWM-RAQM 75
>gnl|CDD|215190 PLN02332, PLN02332, membrane bound O-acyl transferase (MBOAT)
family protein.
Length = 465
Score = 25.4 bits (56), Expect = 8.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 93 PISTVNNPVYTEPPIKTKFGYHII 116
P+S P Y E +FGY +
Sbjct: 232 PLSRFTEPDYQEWGFWHRFGYQYM 255
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.130 0.368
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,844,529
Number of extensions: 480332
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 31
Length of query: 122
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 38
Effective length of database: 7,211,866
Effective search space: 274050908
Effective search space used: 274050908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.2 bits)