RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6496
(122 letters)
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact;
peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} PDB:
3ui5_A 1fjd_A 1eq3_A
Length = 101
Score = 145 bits (368), Expect = 7e-47
Identities = 74/100 (74%), Positives = 88/100 (88%)
Query: 23 KKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMV 82
G AVKVRHILCEK K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMV
Sbjct: 2 PMGSNAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMV 61
Query: 83 GEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
G FQ+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 62 GPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 101
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation,
cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1,
cell cycle; NMR {Cenarchaeum symbiosum}
Length = 97
Score = 109 bits (275), Expect = 1e-32
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 20 GKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMV 77
G +K HIL +KQ + L E+LK+G KF ++A + S D A++ G LG+
Sbjct: 1 GPMGSMADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFG 60
Query: 78 RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120
RG MV F+DAAF+L + V+ PV K++FGYH+I G
Sbjct: 61 RGKMVKPFEDAAFRLQVGEVSEPV------KSEFGYHVIKRLG 97
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS
peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB:
1jnt_A
Length = 92
Score = 105 bits (264), Expect = 3e-31
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 29 VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMVRGSMVGEFQD 87
HIL +++ L+ LE++K+G F ++A ++S ++GGDLG +G MV F
Sbjct: 4 AAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDK 63
Query: 88 AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 121
F P+ P+ T+FGYHII V +
Sbjct: 64 VVFSCPVLEPTGPL------HTQFGYHIIKVLYR 91
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR
{Bacillus subtilis}
Length = 93
Score = 101 bits (253), Expect = 2e-29
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 25 GGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK-ARQGGDLGWMVR-GSMV 82
G ++ HIL + E +KLK G KF ++A +YS D A +GGDLGW + G M
Sbjct: 1 GSGKIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMD 60
Query: 83 GEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 121
F AAFKL V++PV KT++GYHII +
Sbjct: 61 ETFSKAAFKLKTGEVSDPV------KTQYGYHIIKKTEE 93
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin,
cell inner membrane, cell membrane, membrane, rotamase,
stress response; NMR {Escherichia coli}
Length = 102
Score = 99.6 bits (249), Expect = 9e-29
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 29 VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQ 86
+ I + + + L++L G F +A + S D AR GGD+GW+ ++ E +
Sbjct: 6 TRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELK 65
Query: 87 DAAFKLP--ISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
+A K +S IK+ G+ I+ ++ +
Sbjct: 66 NAGLKEKGQLSG---------VIKSSVGFLIVRLDDIQ 94
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase
domain, 11189O3,PSI2., structural genomics; 1.55A
{Novosphingobium aromaticivorans}
Length = 112
Score = 99.3 bits (248), Expect = 2e-28
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 15/107 (14%)
Query: 25 GGTAVKVRHIL--------CEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGW 75
G ++ I + + + +E+LK G F A QYSE A GGDLGW
Sbjct: 4 GTEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGW 63
Query: 76 MVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
+ + E A + + PV + + G+ I+ + K+
Sbjct: 64 IRLAQLPTELATTAASMGPGQLAGPV------EIRGGFSILYLIDKR 104
>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, pcsep; 1.82A {Salmonella
enterica subsp}
Length = 110
Score = 97.3 bits (243), Expect = 9e-28
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 22 QKKGGTAVKVRHILC---------EKQSKVLEALEKLKSG-VKFPEVASQYSEDK--ARQ 69
T V RHIL + + K+ E +KSG F A +YS+D A Q
Sbjct: 2 NAISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQ 61
Query: 70 GGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
GGDLGW F+DA KL ++ PV + FG+H+I + +
Sbjct: 62 GGDLGWATPDIFDPAFRDALTKLHKGQISAPV------HSSFGWHLIELLDTR 108
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans
isomerase domain, peptide, complex; 1.30A {Escherichia
coli} SCOP: d.26.1.1 PDB: 2pv2_A
Length = 103
Score = 94.7 bits (236), Expect = 8e-27
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 27 TAVKVRHIL------------CEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDL 73
T + + HIL E +S+ +++ ++G F ++A +S D +A GG +
Sbjct: 1 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQM 60
Query: 74 GWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
GW + G F A + P+ ++ G+HI+ V +
Sbjct: 61 GWGRIQELPGIFAQALSTAKKGDIVGPI------RSGVGFHILKVNDLR 103
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter
jejuni}
Length = 252
Score = 93.7 bits (233), Expect = 6e-25
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 21 KQKKGGTAVKVRHILCEKQSKVLEALEKLK------SGVKFPEVASQYSEDK--ARQGGD 72
+ V+ +HIL + + + + +LK KF E+A + S D QGG+
Sbjct: 105 DKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGE 164
Query: 73 LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
LGW + +MV F DAAF L T+ T P+KT FGYH+I+ E +
Sbjct: 165 LGWFDQSTMVKPFTDAAFALKNGTI-----TTTPVKTNFGYHVILKENSQ 209
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase,
lipoprotein, membrane, palmitate, rotamase; NMR
{Staphylococcus aureus}
Length = 111
Score = 90.0 bits (224), Expect = 6e-25
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 29 VKVRHILC---------------EKQSKVLEALEKLKSG-VKFPEVASQYSEDK--ARQG 70
K HIL E + K E +++ KF E+A + S D A++
Sbjct: 8 KKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKD 67
Query: 71 GDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 119
G+LG++++G +F+ A FKL V+ V K+ FGYHII +
Sbjct: 68 GELGYVLKGQTDKDFEKALFKLKDGEVSEVV------KSSFGYHIIKAD 110
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD,
small molecule, ppiase, cell cycle, nucleus,
phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens}
PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Length = 123
Score = 85.9 bits (213), Expect = 4e-23
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 29/114 (25%)
Query: 29 VKVRHILC---------------------EKQSKVLEALEKLKSG-VKFPEVASQYSEDK 66
V+ H+L E + ++K+KSG F +ASQ+S+
Sbjct: 15 VRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCS 74
Query: 67 -ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 119
A+ GDLG RG M F+DA+F L ++ PV T G HII+
Sbjct: 75 SAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPV------FTDSGIHIILRT 122
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 86.8 bits (215), Expect = 6e-23
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 30/133 (22%)
Query: 12 KDKEEDSSGKQKKGGTAVKVRHILC----------------------EKQSKVLEALEKL 49
+ + V+V H+L E + + LE++
Sbjct: 51 AKFKNNGYKPLVNEDGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERI 110
Query: 50 KSG-VKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPI 107
SG VK E+A+ S+ +GGDLG+ +G M F++AAF L + V+N +
Sbjct: 111 LSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNII------ 164
Query: 108 KTKFGYHIIMVEG 120
+T G HI+ G
Sbjct: 165 ETNSGVHILQRTG 177
>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1,
phosphorylation; NMR {Arabidopsis thaliana} SCOP:
d.26.1.1
Length = 139
Score = 85.6 bits (212), Expect = 7e-23
Identities = 32/136 (23%), Positives = 47/136 (34%), Gaps = 33/136 (24%)
Query: 12 KDKEEDSSGKQKKGGTAVKVRHILC-------------------------EKQSKVLEAL 46
G VK HIL ++
Sbjct: 10 HSSGLVPRGSHMASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIR 69
Query: 47 EKLKSG-VKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTE 104
E + SG F EVA++ S+ A++GGDLG RG M F++A + L + +++ V
Sbjct: 70 EDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIV--- 126
Query: 105 PPIKTKFGYHIIMVEG 120
T G HII
Sbjct: 127 ---DTDSGVHIIKRTA 139
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 84.9 bits (210), Expect = 3e-22
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 33/140 (23%)
Query: 7 SGKSSKDKEEDSSGKQKKGGTA----VKVRHILC---------------------EKQSK 41
+ S ++ +S K G V+ H+L E
Sbjct: 32 TNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALEL 91
Query: 42 VLEALEKLKSG-VKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNN 99
+ ++K+KSG F +ASQ+S+ A+ GDLG RG M F+DA+F L ++
Sbjct: 92 INGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSG 151
Query: 100 PVYTEPPIKTKFGYHIIMVE 119
PV T G HII+
Sbjct: 152 PV------FTDSGIHIILRT 165
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A,
periplasmic molecular chaperone, membrane protein
folding, GRAM negative bacteria; 3.00A {Escherichia
coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Length = 408
Score = 70.9 bits (173), Expect = 9e-16
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 20 GKQKKGGTAVKVRHILC------------EKQSKVLEALEKLKSGVKFPEVASQYSED-K 66
G Q T + + HIL E +S+ +++ ++G F ++A +S D +
Sbjct: 145 GNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQ 204
Query: 67 ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
A GG +GW + G F A + PI++ G+HI+ V +
Sbjct: 205 ALNGGQMGWGRIQELPGIFAQALSTAKKGDIV------GPIRSGVGFHILKVNDLR 254
Score = 67.0 bits (163), Expect = 2e-14
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 15 EEDSSGKQKKGGTAVKVRHILC---------EKQSKVLEALEKLKSG-VKFPEVASQYSE 64
+ + T V RHIL + + K+ + +KSG F A ++S+
Sbjct: 251 NDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQ 310
Query: 65 DK--ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
D A QGGDLGW F+DA +L ++ P+ + FG+H+I + +
Sbjct: 311 DPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMS------APVHSSFGWHLIELLDTR 364
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
chaperon unknown function; 3.10A {Leptospira interrogans
serovar copenhaorganism_taxid}
Length = 325
Score = 70.0 bits (171), Expect = 1e-15
Identities = 16/118 (13%), Positives = 39/118 (33%), Gaps = 23/118 (19%)
Query: 22 QKKGGTAVKVRHILC-------EKQSKVLEALEK-----LKSGVKFPEVASQYSEDK--A 67
+ K G ++ R I ++++++ + + + L F +A D
Sbjct: 153 KDKVGFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALR 212
Query: 68 RQGGDLGWMVRGSMVGEFQ---DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
+ G + W+ + + A LP V+ + + + I+ K
Sbjct: 213 ARRGMVEWISSFDLYKYSKITATIAAPLPNGGVS------EVFRDERKRYCILKIEGK 264
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A
{Campylobacter jejuni}
Length = 252
Score = 46.4 bits (110), Expect = 3e-07
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 22/110 (20%)
Query: 13 DKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGD 72
K + + + T + L S + LE +K+ K
Sbjct: 120 KKFFEQNKDKFTFYTQINANIYL----SNNPQTLENIKNTKKT------------ILKPQ 163
Query: 73 LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
+ + ++P+ + + P + K GY + V+ K
Sbjct: 164 NASLNTSNADPRLLGLLSQIPVGSFS------PVLNGKNGYELYEVKSKD 207
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 2e-04
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 11/31 (35%)
Query: 37 EKQSKVLEALEKLKSGVKFPEVASQYSEDKA 67
EKQ+ L+KL++ +K Y++D A
Sbjct: 18 EKQA-----LKKLQASLKL------YADDSA 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.11
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 43 LEALEKLKSGVKFPEVASQYS--EDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNP 100
L+ +E + F V + E K R W GS++ Q F P N+P
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDS-TAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 101 VYTE 104
Y
Sbjct: 540 KYER 543
Score = 30.2 bits (67), Expect = 0.14
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 1 MGPKKGSGKSS--KDKEEDSSGKQKKGGTA--VKVRHILCEKQSKVLEALEKL 49
+ GSGK+ D + K + +++ C VLE L+KL
Sbjct: 158 VL---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN--CNSPETVLEMLQKL 205
Score = 28.7 bits (63), Expect = 0.48
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 27/79 (34%)
Query: 32 RHILCEKQSKVLEA-LEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAF 90
+H+ C+K + ++E+ L L+ E + L V F +A
Sbjct: 348 KHVNCDKLTTIIESSLNVLEP----AEYRKMFD--------RLS--V-------FPPSA- 385
Query: 91 KLPISTV----NNPVYTEP 105
+P + + + ++
Sbjct: 386 HIPTILLSLIWFDVIKSDV 404
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80;
transcription, galactose metabolism, repressor; 2.10A
{Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB:
3e1k_A
Length = 479
Score = 27.7 bits (61), Expect = 1.1
Identities = 8/66 (12%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 23 KKGGTAVKVRHILCEK-------QSKVLEALEKLKSGVKFPEVASQYSED----KARQ-- 69
+ + +R++ E Q++ L ++ + ++ ++ + Q + +A++
Sbjct: 130 EHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT-IICLQGRKSPYIVRAKELI 188
Query: 70 -GGDLG 74
G +G
Sbjct: 189 SEGCIG 194
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 2.3
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 27/91 (29%)
Query: 26 GTAVKVRHILCE---KQSKVLEALEKLKSGVKFPEVA----SQYSED-KARQGGDLGWMV 77
G + +R QS++ + KLK +F VA S DL
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL---- 443
Query: 78 RGSMVGEFQDAAFK---LPISTVNNPVY-TE 104
+ +F + I PVY T
Sbjct: 444 ------VKNNVSFNAKDIQI-----PVYDTF 463
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 26.0 bits (58), Expect = 3.3
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 70 GGDLGWMVRGSMVGEFQDAAFKL 92
G DL G D A +
Sbjct: 71 GADLSEAGSGGSPSSAYDMAVER 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.130 0.368
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,728,022
Number of extensions: 90159
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 31
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.4 bits)