RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6496
         (122 letters)



>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14
           [TaxId: 9606]}
          Length = 96

 Score =  105 bits (262), Expect = 2e-31
 Identities = 73/95 (76%), Positives = 87/95 (91%)

Query: 28  AVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQD 87
           AVKVRHILCEK  K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ+
Sbjct: 2   AVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQE 61

Query: 88  AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 62  AAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96


>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli
           [TaxId: 562]}
          Length = 92

 Score = 73.1 bits (179), Expect = 7e-19
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 29  VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQG-GDLGWMVRGSMVGEFQD 87
               HIL +++   L+ LE++K+G  F ++A ++S   + +  GDLG   +G MV  F  
Sbjct: 4   AAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDK 63

Query: 88  AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 121
             F  P+     P+       T+FGYHII V  +
Sbjct: 64  VVFSCPVLEPTGPL------HTQFGYHIIKVLYR 91


>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains
           {Escherichia coli [TaxId: 562]}
          Length = 108

 Score = 57.8 bits (139), Expect = 8e-13
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 18/108 (16%)

Query: 27  TAVKVRHILC---------EKQSKVLEALEKLKSG-VKFPEVASQYSEDK--ARQGGDLG 74
           T V  RHIL          + + K+ +    +KSG   F   A ++S+D   A QGGDLG
Sbjct: 5   TEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLG 64

Query: 75  WMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           W         F+DA  +L    ++ PV       + FG+H+I +   +
Sbjct: 65  WATPDIFDPAFRDALTRLNKGQMSAPV------HSSFGWHLIELLDTR 106


>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains
           {Escherichia coli [TaxId: 562]}
          Length = 103

 Score = 54.8 bits (131), Expect = 1e-11
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 19/109 (17%)

Query: 27  TAVKVRHIL------------CEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGD-L 73
           T + + HIL             E +S+    +++ ++G  F ++A  +S D+    G  +
Sbjct: 1   TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQM 60

Query: 74  GWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           GW     + G F  A        +        PI++  G+HI+ V   +
Sbjct: 61  GWGRIQELPGIFAQALSTAKKGDIV------GPIRSGVGFHILKVNDLR 103


>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 120

 Score = 53.3 bits (127), Expect = 7e-11
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 33/117 (28%)

Query: 29  VKVRHILCEKQSKVL------------------EALEKLKS--------GVKFPEVASQY 62
           VK  HIL + Q                       A+E+LKS           F EVA++ 
Sbjct: 8   VKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRV 67

Query: 63  SED-KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMV 118
           S+   A++GGDLG   RG M   F++A + L +  +++ V       T  G HII  
Sbjct: 68  SDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIV------DTDSGVHIIKR 118


>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 119

 Score = 52.9 bits (126), Expect = 9e-11
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 30/124 (24%)

Query: 20  GKQKKGG-TAVKVRHILC---------------------EKQSKVLEALEKLKSGVK-FP 56
           GK  +G    V+  H+L                      E    +   ++K+KSG + F 
Sbjct: 1   GKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFE 60

Query: 57  EVASQYSEDKARQGGD-LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHI 115
            +ASQ+S+  + +    LG   RG M   F+DA+F L    ++ PV       T  G HI
Sbjct: 61  SLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPV------FTDSGIHI 114

Query: 116 IMVE 119
           I+  
Sbjct: 115 ILRT 118


>d1llaa1 a.85.1.1 (A:2-109) Hemocyanin, N-terminal domain
          {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
          Length = 108

 Score = 26.2 bits (58), Expect = 0.64
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 37 EKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLG 74
          +KQ ++    E+L S     +       D+ +  G L 
Sbjct: 3  DKQIRICHLFEQLSSATVIGDGDKHKHSDRLKNVGKLQ 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 418,188
Number of extensions: 16721
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 11
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.5 bits)