BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6499
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
          Maltotetraose
 pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
          Maltotetraose
 pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
          Isopanose
 pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
          Isopanose
          Length = 588

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 52 AMEFYMMPMALTYALKIFNYFFTAV 76
          A +F MMPM  T + ++F+Y+F  V
Sbjct: 51 AWQFQMMPMRKTGSDELFDYWFAEV 75


>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
          Neopullulanase
 pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
          Neopullulanase
 pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
 pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
          Length = 588

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 52 AMEFYMMPMALTYALKIFNYFFTAV 76
          A +F MMPM  T + ++F+Y+F  V
Sbjct: 51 AWQFQMMPMRKTGSDELFDYWFAEV 75


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.334    0.143    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,581,699
Number of Sequences: 62578
Number of extensions: 77061
Number of successful extensions: 204
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 2
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 45 (21.9 bits)