Query psy6499
Match_columns 101
No_of_seqs 118 out of 1052
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 19:40:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dxw_A Navrh, ION transport pr 99.6 2.5E-15 8.7E-20 96.3 4.1 75 26-100 4-79 (229)
2 3rvy_A ION transport protein; 99.5 4E-14 1.4E-18 93.3 5.8 79 21-100 17-96 (285)
3 1ors_C Potassium channel; volt 99.3 1.4E-11 4.9E-16 73.1 6.6 69 30-100 2-72 (132)
4 2r9r_B Paddle chimera voltage 99.0 1.1E-10 3.8E-15 82.6 2.1 81 20-100 161-276 (514)
5 2kyh_A KVAP, voltage-gated pot 98.9 1.2E-08 4.2E-13 61.5 8.1 78 21-98 8-87 (147)
6 1orq_C Potassium channel; volt 98.4 5.5E-08 1.9E-12 61.8 0.9 69 28-96 2-72 (223)
7 3beh_A MLL3241 protein; transm 98.4 3.6E-07 1.2E-11 61.6 4.7 69 31-99 5-75 (355)
8 1qg9_A Protein (sodium channel 97.5 6.6E-05 2.3E-09 31.9 2.1 20 71-90 4-23 (26)
9 2kav_A Sodium channel protein 84.8 0.21 7.1E-06 29.2 0.3 14 1-14 17-30 (129)
10 1byy_A Protein (sodium channel 44.4 8.7 0.0003 18.5 1.0 8 8-15 1-8 (53)
11 1r4p_B Sltii B subunit, shiga- 35.3 12 0.0004 18.7 0.6 10 91-100 26-35 (70)
12 1c4q_A Protein (shiga-like tox 21.7 29 0.00098 17.3 0.6 10 91-100 27-36 (69)
No 1
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.55 E-value=2.5e-15 Score=96.33 Aligned_cols=75 Identities=15% Similarity=0.375 Sum_probs=64.1
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cccccccCCCC
Q psy6499 26 LIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALG-LHIYLKDSYTN 100 (101)
Q Consensus 26 ~~~~iv~~~~f~~~i~~~i~ln~i~l~~~~~~~~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g-~~~y~~~~wN~ 100 (101)
.++++++|++|+.+++++|++|++.+++++++++++....++..|.+++++|++|+++|+++.| ++.|++++||.
T Consensus 4 ~~~~iv~~~~f~~~i~~~I~ln~i~l~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~~~~~~y~~~~wni 79 (229)
T 4dxw_A 4 FFSSLKDNRIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEILIRFIGEKQKADFFKSGWNI 79 (229)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHHHSTTTCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHhcCCcHH
Confidence 5788999999999999999999999999999999999999999999999999999999999996 57899999984
No 2
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.49 E-value=4e-14 Score=93.34 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCC
Q psy6499 21 ERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYM-MPMALTYALKIFNYFFTAVFILECFMKLLALGLHIYLKDSYT 99 (101)
Q Consensus 21 ~~~~~~~~~iv~~~~f~~~i~~~i~ln~i~l~~~~~~-~~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~~~y~~~~wN 99 (101)
+.+|+.+++++++++|+.++++++++|++.+++++++ .+.+....+..++.+++++|++|+++|+++.| ..|++++||
T Consensus 17 ~~~r~~~~~i~~~~~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~~-~~y~~~~wn 95 (285)
T 3rvy_A 17 SHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHR-ISFFKDPWS 95 (285)
T ss_dssp --CHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTG-GGGGGCHHH
T ss_pred hHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHcCChH
Confidence 4589999999999999999999999999999999987 45667789999999999999999999999999 679999998
Q ss_pred C
Q psy6499 100 N 100 (101)
Q Consensus 100 ~ 100 (101)
.
T Consensus 96 ~ 96 (285)
T 3rvy_A 96 L 96 (285)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=99.27 E-value=1.4e-11 Score=73.09 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=60.9
Q ss_pred HhcCchHHHHHHHHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cccccccCCCC
Q psy6499 30 VVTSKYFDLAIAAVIGLNVITMAMEFYMM-PMALTYALKIFNYFFTAVFILECFMKLLALG-LHIYLKDSYTN 100 (101)
Q Consensus 30 iv~~~~f~~~i~~~i~ln~i~l~~~~~~~-~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g-~~~y~~~~wN~ 100 (101)
+++++.|+.+++++|++|++.+++|+.++ +.+....+...|.+++++|++|+++|+++.+ +..|++ ||.
T Consensus 2 ~v~~~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~~~~~~y~~--~ni 72 (132)
T 1ors_C 2 VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVK--KTL 72 (132)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTT--TCG
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--HHH
Confidence 57899999999999999999999999875 4567788999999999999999999999864 567888 874
No 4
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.99 E-value=1.1e-10 Score=82.58 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcC-------chHHHHHHHHHHHHHHHHhhhcCCCC---------------------------HHHHHH
Q psy6499 20 EERWRLLIHSVVTS-------KYFDLAIAAVIGLNVITMAMEFYMMP---------------------------MALTYA 65 (101)
Q Consensus 20 ~~~~~~~~~~iv~~-------~~f~~~i~~~i~ln~i~l~~~~~~~~---------------------------~~~~~~ 65 (101)
++++|+.++.++++ +.|+.+++++|++|++.+++++.++. ......
T Consensus 161 ~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2r9r_B 161 ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDP 240 (514)
T ss_dssp SCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCH
T ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhH
Confidence 35688999999987 48999999999999999999987541 113456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcc-cccccCCCC
Q psy6499 66 LKIFNYFFTAVFILECFMKLLALGLH-IYLKDSYTN 100 (101)
Q Consensus 66 l~~~~~~f~~if~~E~~lk~~a~g~~-~y~~~~wN~ 100 (101)
+.+++.+++++|++|+++|+++.+.+ .|+++.||.
T Consensus 241 l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y~ks~wni 276 (514)
T 2r9r_B 241 FFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNI 276 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSSSSTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHhchhHH
Confidence 88899999999999999999999864 899999984
No 5
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.89 E-value=1.2e-08 Score=61.45 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccccccCC
Q psy6499 21 ERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMM-PMALTYALKIFNYFFTAVFILECFMKLLALGL-HIYLKDSY 98 (101)
Q Consensus 21 ~~~~~~~~~iv~~~~f~~~i~~~i~ln~i~l~~~~~~~-~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~-~~y~~~~w 98 (101)
+++++.++++++++.|+..+.+++++|.+.+++++.+. +.+....+..+|.+++++|++|.++++++..- ..|++++|
T Consensus 8 ~~~~~~~~~~~e~~~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~~k~~f~~~~i 87 (147)
T 2kyh_A 8 GGRVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTL 87 (147)
T ss_dssp SHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHST
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHH
Confidence 35788899999999999999999999999999998764 55667788999999999999999999998763 57888754
No 6
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=98.40 E-value=5.5e-08 Score=61.81 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=57.6
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cccccc
Q psy6499 28 HSVVTSKYFDLAIAAVIGLNVITMAMEFYM-MPMALTYALKIFNYFFTAVFILECFMKLLALGL-HIYLKD 96 (101)
Q Consensus 28 ~~iv~~~~f~~~i~~~i~ln~i~l~~~~~~-~~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~-~~y~~~ 96 (101)
+++++++.|+.++++++++|++.+++++.+ .+++....+...|.++.++|++|+++|+.+.+. .+|+++
T Consensus 2 ~~~~~~~~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~~~~y~~~ 72 (223)
T 1orq_C 2 GDVMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK 72 (223)
T ss_dssp TTTCCSHHHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHhCchHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 468899999999999999999999998754 344566778899999999999999999998653 356654
No 7
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.38 E-value=3.6e-07 Score=61.55 Aligned_cols=69 Identities=10% Similarity=-0.013 Sum_probs=56.6
Q ss_pred hcCchHHHHHHHHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-cccccCCC
Q psy6499 31 VTSKYFDLAIAAVIGLNVITMAMEFYMM-PMALTYALKIFNYFFTAVFILECFMKLLALGLH-IYLKDSYT 99 (101)
Q Consensus 31 v~~~~f~~~i~~~i~ln~i~l~~~~~~~-~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~~-~y~~~~wN 99 (101)
..|+.|+.+++++|++|++.+++++.++ +.+....++.++.++..+|++|+.+|+.+.+.+ .|++++||
T Consensus 5 p~s~~f~~~~~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~~~~~~~~~~~~~ 75 (355)
T 3beh_A 5 PFLRIYAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKRRAGVVRDRTPKI 75 (355)
T ss_dssp --CCSSSSHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSSCCCHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccccccceeccCcch
Confidence 3577899999999999999999999886 566667788888888889999999999876543 47778776
No 8
>1qg9_A Protein (sodium channel protein, brain II alpha subunit); transmembrane sodium channel, structure, transmembrane channel; NMR {Synthetic} SCOP: j.35.1.1
Probab=97.51 E-value=6.6e-05 Score=31.89 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhCc
Q psy6499 71 YFFTAVFILECFMKLLALGL 90 (101)
Q Consensus 71 ~~f~~if~~E~~lk~~a~g~ 90 (101)
+.|+++|++|+++|++|.|.
T Consensus 4 ~~F~~IYtfE~liKi~ArGf 23 (26)
T 1qg9_A 4 YTFTGIYTFESLIKILARXX 23 (26)
T ss_dssp CCHHHHHHHHHHHHHHTC--
T ss_pred EEeeHHHHHHHHHHHHHhhh
Confidence 46899999999999999884
No 9
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=84.83 E-value=0.21 Score=29.17 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=6.2
Q ss_pred CEEEEEccccccch
Q psy6499 1 MFVGVVVENFHRCR 14 (101)
Q Consensus 1 lFigvii~~f~~~~ 14 (101)
|||+||+|||....
T Consensus 17 LfIAVIlenF~~~~ 30 (129)
T 2kav_A 17 RGSHMASENFSVAT 30 (129)
T ss_dssp -------CCSCCTT
T ss_pred eeeeeeeccHHHHH
Confidence 79999999999877
No 10
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1
Probab=44.42 E-value=8.7 Score=18.51 Aligned_cols=8 Identities=25% Similarity=0.738 Sum_probs=0.0
Q ss_pred cccccchH
Q psy6499 8 ENFHRCRE 15 (101)
Q Consensus 8 ~~f~~~~~ 15 (101)
||||+++.
T Consensus 1 dnFn~~k~ 8 (53)
T 1byy_A 1 DNFNQQKK 8 (53)
T ss_dssp --------
T ss_pred CcHHHHHH
Confidence 68888773
No 11
>1r4p_B Sltii B subunit, shiga-like toxin type II B subunit; AB5 toxin; HET: 1PS; 1.77A {Escherichia coli} SCOP: b.40.2.1 PDB: 2ga4_B* 3mxg_A* 2bos_A* 1qoh_A*
Probab=35.30 E-value=12 Score=18.72 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=8.6
Q ss_pred ccccccCCCC
Q psy6499 91 HIYLKDSYTN 100 (101)
Q Consensus 91 ~~y~~~~wN~ 100 (101)
+.||.++||.
T Consensus 26 keywt~rwnl 35 (70)
T 1r4p_B 26 KEYWTSRWNL 35 (70)
T ss_dssp EEEEECCTTH
T ss_pred eeeeecccch
Confidence 6799999994
No 12
>1c4q_A Protein (shiga-like toxin I subunit B); receptor binding, protein-carbohydrate recognition, OB-fold; HET: GLA GAL BGC; 1.52A {Escherichia coli} SCOP: b.40.2.1 PDB: 1d1i_A* 1czw_A* 1d1k_A* 2xsc_A 1bos_A 1dm0_B 1qnu_A* 1r4q_B 2c5c_A* 1bov_A 4ull_A 1c48_A 1cqf_A* 1czg_A
Probab=21.74 E-value=29 Score=17.25 Aligned_cols=10 Identities=0% Similarity=-0.193 Sum_probs=8.4
Q ss_pred ccccccCCCC
Q psy6499 91 HIYLKDSYTN 100 (101)
Q Consensus 91 ~~y~~~~wN~ 100 (101)
+.||.++||.
T Consensus 27 keywt~rwnl 36 (69)
T 1c4q_A 27 KELATNRANL 36 (69)
T ss_dssp EEEEECCTTH
T ss_pred eeeeecccch
Confidence 6799999984
Done!