Query psy6499
Match_columns 101
No_of_seqs 118 out of 1052
Neff 9.5
Searched_HMMs 13730
Date Fri Aug 16 19:40:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6499.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6499hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1orsc_ f.14.1.1 (C:) Potassiu 99.4 5.3E-13 3.9E-17 77.9 6.9 69 30-98 2-72 (132)
2 d1r4pb_ b.40.2.1 (B:) Verotoxi 33.0 5.6 0.00041 18.7 0.4 10 91-100 26-35 (70)
3 d1c4qa_ b.40.2.1 (A:) Verotoxi 22.1 13 0.00095 17.3 0.6 11 90-100 26-36 (69)
4 d1ixsa_ a.5.1.1 (A:) DNA helic 7.3 1.2E+02 0.0087 13.1 1.6 12 80-91 7-18 (50)
5 d1r1ga_ g.3.7.2 (A:) Neurotoxi 7.0 95 0.0069 11.7 1.3 14 77-90 4-17 (31)
6 d1tifa_ d.15.8.1 (A:) Translat 4.2 1.5E+02 0.011 13.9 1.0 15 7-21 57-71 (76)
7 d1yoba1 c.23.5.1 (A:1-179) Fla 3.7 3E+02 0.022 14.9 2.1 27 2-31 146-172 (179)
8 d1gtfa_ b.82.5.1 (A:) Trp RNA- 3.6 1.5E+02 0.011 13.6 0.6 10 5-14 37-46 (69)
9 d1kf6c_ f.21.2.2 (C:) Fumarate 3.6 2.9E+02 0.021 14.5 1.8 10 43-52 68-77 (130)
10 d1qr0a2 d.150.1.1 (A:102-228) 3.5 2.1E+02 0.015 14.2 1.2 20 72-91 42-61 (127)
No 1
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=99.39 E-value=5.3e-13 Score=77.93 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=60.2
Q ss_pred HhcCchHHHHHHHHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccccccCC
Q psy6499 30 VVTSKYFDLAIAAVIGLNVITMAMEFYMM-PMALTYALKIFNYFFTAVFILECFMKLLALGL-HIYLKDSY 98 (101)
Q Consensus 30 iv~~~~f~~~i~~~i~ln~i~l~~~~~~~-~~~~~~~l~~~~~~f~~if~~E~~lk~~a~g~-~~y~~~~w 98 (101)
+++||.|+..+++++++|++.+++|++++ +++....++..|.+++++|++|+++|+++.+- ..|++++|
T Consensus 2 ~i~~p~~e~~i~~lillnvi~~~let~~~~~~~~~~~l~~~e~v~~~iF~~E~~lrl~~~~~~~~~~~~~~ 72 (132)
T d1orsc_ 2 VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTL 72 (132)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTTTCG
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCccceeCCcch
Confidence 57899999999999999999999999776 77888999999999999999999999998873 34444444
No 2
>d1r4pb_ b.40.2.1 (B:) Verotoxin-1/shiga-toxin, B-pentamer {Shigella dysenteriae, toxin II [TaxId: 622]}
Probab=32.95 E-value=5.6 Score=18.69 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=8.5
Q ss_pred ccccccCCCC
Q psy6499 91 HIYLKDSYTN 100 (101)
Q Consensus 91 ~~y~~~~wN~ 100 (101)
+.||.++||.
T Consensus 26 keywtnrwnl 35 (70)
T d1r4pb_ 26 KEYWTSRWNL 35 (70)
T ss_dssp EEEEECCTTH
T ss_pred ceeeccccch
Confidence 6799999984
No 3
>d1c4qa_ b.40.2.1 (A:) Verotoxin-1/shiga-toxin, B-pentamer {Escherichia coli [TaxId: 562]}
Probab=22.14 E-value=13 Score=17.30 Aligned_cols=11 Identities=0% Similarity=-0.296 Sum_probs=8.8
Q ss_pred cccccccCCCC
Q psy6499 90 LHIYLKDSYTN 100 (101)
Q Consensus 90 ~~~y~~~~wN~ 100 (101)
-+.||.++||.
T Consensus 26 gkeywtnrwnl 36 (69)
T d1c4qa_ 26 DKELATNRANL 36 (69)
T ss_dssp TEEEEECCTTH
T ss_pred Cceehhcccch
Confidence 36799999984
No 4
>d1ixsa_ a.5.1.1 (A:) DNA helicase RuvA subunit, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.33 E-value=1.2e+02 Score=13.08 Aligned_cols=12 Identities=50% Similarity=0.736 Sum_probs=7.8
Q ss_pred HHHHHHHHhCcc
Q psy6499 80 ECFMKLLALGLH 91 (101)
Q Consensus 80 E~~lk~~a~g~~ 91 (101)
|.++.++++|++
T Consensus 7 eA~~AL~aLGFr 18 (50)
T d1ixsa_ 7 EAVMALAALGFK 18 (50)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHhccc
Confidence 556667777754
No 5
>d1r1ga_ g.3.7.2 (A:) Neurotoxin bmk37 {Chinese scorpion (Buthus martensi karsch) [TaxId: 34649]}
Probab=7.04 E-value=95 Score=11.67 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhCc
Q psy6499 77 FILECFMKLLALGL 90 (101)
Q Consensus 77 f~~E~~lk~~a~g~ 90 (101)
|..++-+|.+|+|+
T Consensus 4 yssdcrvkcvamgf 17 (31)
T d1r1ga_ 4 YSSDCRVKCVAMGF 17 (31)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred ccCCceeEEEEEec
Confidence 44567778889885
No 6
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.25 E-value=1.5e+02 Score=13.95 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=8.8
Q ss_pred ccccccchHHHHHHH
Q psy6499 7 VENFHRCREEQEKEE 21 (101)
Q Consensus 7 i~~f~~~~~~~~~~~ 21 (101)
+-+|.+++.++++..
T Consensus 57 i~dygK~~ye~~kk~ 71 (76)
T d1tifa_ 57 IMDYGKFRFEQQKKE 71 (76)
T ss_dssp EECHHHHHHHHHHHH
T ss_pred EEcchhHHHHHHHHH
Confidence 346667776665543
No 7
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}
Probab=3.65 E-value=3e+02 Score=14.85 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=15.5
Q ss_pred EEEEEccccccchHHHHHHHHHHHHHHHHh
Q psy6499 2 FVGVVVENFHRCREEQEKEERWRLLIHSVV 31 (101)
Q Consensus 2 Figvii~~f~~~~~~~~~~~~~~~~~~~iv 31 (101)
|+|..+|.-|+... ...|+.+|+..+.
T Consensus 146 f~GL~lD~dnq~~~---t~~ri~~W~~~l~ 172 (179)
T d1yoba1 146 FVGLALDLDNQSGK---TDERVAAWLAQIA 172 (179)
T ss_dssp BSSEEECTTTCGGG---HHHHHHHHHHHHG
T ss_pred eeeeeccccCchhh---hHHHHHHHHHHHH
Confidence 67888876664421 2355666665443
No 8
>d1gtfa_ b.82.5.1 (A:) Trp RNA-binding attenuation protein (TRAP) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.59 E-value=1.5e+02 Score=13.60 Aligned_cols=10 Identities=20% Similarity=0.487 Sum_probs=6.1
Q ss_pred EEccccccch
Q psy6499 5 VVVENFHRCR 14 (101)
Q Consensus 5 vii~~f~~~~ 14 (101)
|.|.+|.++.
T Consensus 37 vmiaQFTehT 46 (69)
T d1gtfa_ 37 VLIAQFTEHT 46 (69)
T ss_dssp EEEEECCSSE
T ss_pred EEEEEeccce
Confidence 5566676654
No 9
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=3.57 E-value=2.9e+02 Score=14.54 Aligned_cols=10 Identities=40% Similarity=0.727 Sum_probs=5.4
Q ss_pred HHHHHHHHHh
Q psy6499 43 VIGLNVITMA 52 (101)
Q Consensus 43 ~i~ln~i~l~ 52 (101)
++++|.+.++
T Consensus 68 vv~lniiaLa 77 (130)
T d1kf6c_ 68 IVIINLITLA 77 (130)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555655553
No 10
>d1qr0a2 d.150.1.1 (A:102-228) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=3.52 E-value=2.1e+02 Score=14.22 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhCcc
Q psy6499 72 FFTAVFILECFMKLLALGLH 91 (101)
Q Consensus 72 ~f~~if~~E~~lk~~a~g~~ 91 (101)
++...=.=|+.+|..+.|..
T Consensus 42 F~~~Wt~KEA~~Ka~G~GL~ 61 (127)
T d1qr0a2 42 FYHLWSMKESFIKQEGKGLS 61 (127)
T ss_dssp HHHHHHHHHHHHHHHCSTTS
T ss_pred HHHHHHHhHHHHHHhCCCcC
Confidence 34444556999999988753
Done!