RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6499
(101 letters)
>gnl|CDD|226220 COG3696, COG3696, Putative silver efflux pump [Inorganic ion
transport and metabolism].
Length = 1027
Score = 35.7 bits (83), Expect = 0.002
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 5 VVVENFHRCREE--QEKEERWRLLIHSVV---TSKYFDLAIAAVIGLNVITM-AMEFYMM 58
VVVEN HR EE R+ ++ + +F L I V+ L + T+ +E +
Sbjct: 407 VVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGLLIITVVFLPIFTLTGVEGKLF 466
Query: 59 -PMALTYALKIFNYFFTAV 76
P+A T + ++
Sbjct: 467 APLAFTKTYALLAALLLSI 485
>gnl|CDD|237805 PRK14726, PRK14726, bifunctional preprotein translocase subunit
SecD/SecF; Provisional.
Length = 855
Score = 27.0 bits (60), Expect = 1.9
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 3 VGVVVEN----FHRCREEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNV---ITMAMEF 55
+G+ V++ + R REE++ LI ++ F A+A ++ NV I + F
Sbjct: 434 IGMAVDSNVLIYERIREEEKTG---HSLIQALDRG--FSRALATIVDANVTILIAAVILF 488
Query: 56 YMMP-----MALTYALKIFNYFFTAVFI 78
++ A+T A+ I FTA +
Sbjct: 489 FLGSGAVRGFAVTLAVGILTTVFTAFTL 516
>gnl|CDD|183831 PRK12933, secD, preprotein translocase subunit SecD; Reviewed.
Length = 604
Score = 26.2 bits (58), Expect = 3.7
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 3 VGVVVEN----FHRCREEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITM--AMEFY 56
VG+ V+ F R ++ K + R ++ T FD A + + N TM A+ Y
Sbjct: 503 VGMAVDTNVLIFERIKD---KLKEGRSFAQAIDTG--FDSAFSTIFDANFTTMITAVVLY 557
Query: 57 MM---PM---ALTYALKIFNYFFTAVF 77
+ P+ ALT L + FT +F
Sbjct: 558 SIGNGPIQGFALTLGLGLLTSMFTGIF 584
>gnl|CDD|172499 PRK13998, PRK13998, potassium-transporting ATPase subunit C;
Provisional.
Length = 186
Score = 25.8 bits (56), Expect = 4.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 44 IGLNVITMAMEFYMMPMALTYALKIFNY 71
I L +ITM + ++ P+A+T +IF Y
Sbjct: 8 ICLTIITMVLCGFLFPLAITLIGQIFFY 35
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family
contains Sodium, Potassium, Calcium ion channels. This
family is 6 transmembrane helices in which the last two
helices flank a loop which determines ion selectivity.
In some sub-families (e.g. Na channels) the domain is
repeated four times, whereas in others (e.g. K
channels) the protein forms as a tetramer in the
membrane. A bacterial structure of the protein is known
for the last two helices but is not the Pfam family due
to it lacking the first four helices.
Length = 194
Score = 25.7 bits (57), Expect = 4.8
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 68 IFNYFFTAVFILECFMKLLALGL-HIYLKD 96
I +Y FT +F LE +K +ALG Y +
Sbjct: 1 ILDYVFTVIFTLEMLLKFIALGFKRKYFRS 30
>gnl|CDD|236252 PRK08376, PRK08376, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 521
Score = 25.8 bits (57), Expect = 4.9
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 26 LIHSVVTSKYFDLAIAAVIG-LNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMK 84
+ + S L IA + G + MA M T KI F A MK
Sbjct: 178 MFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENPTVVAKIALALFIAGLA----MK 233
Query: 85 LLALGLHIYLKDSYT 99
A+ +H++L D+Y
Sbjct: 234 SGAVPVHMWLPDAYP 248
>gnl|CDD|198413 cd10431, GHITM, Growth-hormone inducible transmembrane protein.
GHITM appears to be ubiquitiously expressed in mammalian
cells and expression has also been observed in various
cancer cell lines. A cytoprotective function has been
suggested. It is closely related to the BAX inhibitor
(BI)-1 like family of small transmembrane proteins,
which have been shown to have an antiapoptotic effect.
Length = 264
Score = 25.0 bits (55), Expect = 7.5
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 38 LAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
+AA+IG ++ + + P A A + AV CF+
Sbjct: 85 ATLAAMIGSGMLVRSYTYPENPGAKHLAWLGHSGVQGAVLAPLCFL 130
>gnl|CDD|237876 PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA
polymerase; Provisional.
Length = 553
Score = 24.9 bits (55), Expect = 8.7
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 10/41 (24%)
Query: 14 REEQEKEERW----------RLLIHSVVTSKYFDLAIAAVI 44
+E E+E RW RLL V + DL +A+ +
Sbjct: 41 AQEGEEEPRWVWASTAALYPRLLAAGVRVERCHDLMLASQL 81
>gnl|CDD|171815 PRK12911, PRK12911, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 1403
Score = 25.2 bits (55), Expect = 8.9
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 1 MFVGVVVENFHRCREEQEKEERWRLLIHSVVTS--KYFDLAIAAVIGLNVITMAMEFYMM 58
M V V F R REE LL S+ S + A +A+ N+ T+ ++
Sbjct: 973 MAVDANVLVFERIREEY-------LLSRSLSESVEAGYKKAFSAIFDSNLTTILASALLL 1025
Query: 59 PM--------ALTYALKIFNYFFTAVFILECF 82
+ ALT + IF+ FTA+F+ + F
Sbjct: 1026 MLDTGPIKGFALTLIIGIFSSMFTALFMTKFF 1057
>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor;
Provisional.
Length = 571
Score = 24.8 bits (55), Expect = 9.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 56 YMMPMALTYAL 66
Y+ MALTY L
Sbjct: 215 YVQGMALTYTL 225
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.334 0.143 0.431
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,272,884
Number of extensions: 456776
Number of successful extensions: 878
Number of sequences better than 10.0: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 59
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.3 bits)