RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6499
(101 letters)
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 67.7 bits (166), Expect = 2e-15
Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 24 RLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFM 83
S+ ++ F + ++I LN + + Y + + + +Y T F++E +
Sbjct: 2 TPFFSSLKDNRIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEILI 61
Query: 84 KLLALGLHI-YLKDSY 98
+ + + K +
Sbjct: 62 RFIGEKQKADFFKSGW 77
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 68.2 bits (167), Expect = 2e-15
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 19 KEERWRLLIHSVVTSKYFDLAIAAVIGLNVITMAMEFY-MMPMALTYALKIFNYFFTAVF 77
+ L I ++V S +F I +I LN ITM +E + +FN +F
Sbjct: 15 RGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIF 74
Query: 78 ILECFMKLLALGLHIYLKDSY 98
+E +++ + + KD +
Sbjct: 75 TIEIILRIYVHRIS-FFKDPW 94
Score = 27.8 bits (62), Expect = 0.57
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 1 MFVGVVVENFHRCREEQEKEER 22
+ V + V+ +++E+
Sbjct: 230 LVVAICVDAMAILNQKEEQHII 251
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 31.8 bits (73), Expect = 0.017
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 33 SKYFDLAIAAVIGLNVITMAME-FYMMPMALTYALKIFNYFFTAVFILECFMKLLA 87
+L ++ L+VI + +E + L + + + + +
Sbjct: 7 HPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK 62
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET:
LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 31.0 bits (70), Expect = 0.041
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 33 SKYFDLAIAAVIGLNVITMAME-FYMMPMALTYALKIFNYFFTAVFILECFMKLLA 87
+ + A + ++ +A M AL ++L+ LL
Sbjct: 7 LRIYAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLK 62
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT,
cytoplasmic vesicle, membrane, Ca structural protein;
7.94A {Bos taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.16
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 11 HRCREEQEKEERWR 24
R +E E +WR
Sbjct: 78 DRLTQEPESIRKWR 91
Score = 25.1 bits (54), Expect = 4.5
Identities = 6/11 (54%), Positives = 7/11 (63%), Gaps = 2/11 (18%)
Query: 14 REEQEK--EER 22
REEQ K +E
Sbjct: 91 REEQRKRLQEL 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.17
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 17/38 (44%)
Query: 15 EEQE--K-EERWRLLIHSVVTSKYFD-----LAIAAVI 44
E+Q K + +L Y D LAI A +
Sbjct: 18 EKQALKKLQASLKL---------YADDSAPALAIKATM 46
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 28.3 bits (64), Expect = 0.38
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
Query: 5 VVVENFHRCREEQE---------KEERWRLLIHS---VVTSKYFDLAIAAVIGLNVITM- 51
V++EN H+ EE + + RW+++ + V + + L I + + + T+
Sbjct: 416 VMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPIFTLE 475
Query: 52 AMEFYM-MPMALT--YAL 66
E + P+A T YA+
Sbjct: 476 GQEGRLFGPLAFTKTYAM 493
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell
membrane, MEM protein transport, translocation,
transmembrane, transport; 3.30A {Thermus thermophilus}
PDB: 2rrn_A
Length = 741
Score = 25.9 bits (57), Expect = 2.5
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 10 FHRCREEQEKEERWRLLIHSVVTSKYFDLAIAAVIGLNVITM--AMEFYMM---PM---A 61
F R +EE ++ R I F + ++ +N+ + A Y P+ A
Sbjct: 346 FERIKEELRAGKKLRQAIPEG-----FRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFA 400
Query: 62 LTYALKIFNYFFTAVFILECFMKLL 86
+ A+ + F+ + ++ L
Sbjct: 401 VILAIGVVASVFSNLVFSRHLLERL 425
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 24.8 bits (55), Expect = 7.2
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 42 AVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGL 90
V+ + + +++ L +A AV ++ C A GL
Sbjct: 331 TVLLVAISAFIYWYFIAHAPLLFAFTT----LIAVLVVAC---PCAFGL 372
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 24.8 bits (55), Expect = 7.2
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 33 SKYFDLAIAAVIGLNVITMAMEFYMMPMALTYALKIFNYFFTAVFILECFMKLLALGL 90
YF I V+ + + +++ L +A AV ++ C A GL
Sbjct: 247 VAYF---IPTVLLVAISAFIYWYFIAHAPLLFAFTT----LIAVLVVAC---PCAFGL 294
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 24.5 bits (54), Expect = 8.2
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 17/46 (36%)
Query: 64 YALKIFNYFFTAVFI----------LECFMKLLA-------LGLHI 92
+KI+ FT +F + ++KL+ GLHI
Sbjct: 408 ENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHI 453
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.334 0.143 0.431
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,603,535
Number of extensions: 83947
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 21
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.4 bits)