RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6499
         (101 letters)



>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
          pernix [TaxId: 56636]}
          Length = 132

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 30 VVTSKYFDLAIAAVIGLNVITMAME-FYMMPMALTYALKIFNYFFTAVFILECFMKLLAL 88
          V+     +L ++    L+VI + +E    +       L + +     +   +   +    
Sbjct: 2  VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS 61

Query: 89 G 89
          G
Sbjct: 62 G 62


>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 109

 Score = 23.2 bits (50), Expect = 5.4
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 36 FDLAIAAVIGL---NVITMAMEFYMMPMALTYALKIFNYFFTAVF 77
           DLA+A VIG     ++T   +  + P+     +   +       
Sbjct: 6  VDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNAQSDVGILRI 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.143    0.431 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 387,011
Number of extensions: 15036
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 5
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.0 bits)