BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6501
         (174 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1X57|A Chain A, Solution Structures Of The Hth Domain Of Human Edf-1
          Protein
          Length = 91

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 54/63 (85%)

Query: 27 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGI 86
          ++V L++ K++ QGRQ+KG +QKDLATKINEKPQ++ DYE GR IPN  ++GK+ERA+G+
Sbjct: 8  DRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGL 67

Query: 87 RLR 89
          +LR
Sbjct: 68 KLR 70



 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 49/58 (84%)

Query: 117 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
           ++V L++ K++ QGRQ+KG +QKDLATKINEKPQ++ DYE GR IPN  ++GK+ERA+
Sbjct: 8   DRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAI 65


>pdb|2JVL|A Chain A, Nmr Structure Of The C-Terminal Domain Of Mbf1 Of
          Trichoderm
          Length = 107

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 16 KLDRETEELKHEKVPLDLAKLLMQGRQ--AKGWSQKDLATKINEKPQIVNDYEGGRGIPN 73
          K+DR  + +K + V  ++ K + QGRQ      +Q +L  +I E    V  YE G   P+
Sbjct: 18 KVDRSDDIIKPKTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPD 77

Query: 74 QAIIGKMERALGIRLR 89
          Q I+ KMER L ++LR
Sbjct: 78 QNILSKMERVLNVKLR 93



 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 106 KLDRETEELKHEKVPLDLAKLLMQGRQ--AKGWSQKDLATKINEKPQIVNDYEGGRGIPN 163
           K+DR  + +K + V  ++ K + QGRQ      +Q +L  +I E    V  YE G   P+
Sbjct: 18  KVDRSDDIIKPKTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPD 77

Query: 164 QAIIGKMERAL 174
           Q I+ KMER L
Sbjct: 78  QNILSKMERVL 88


>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide
           Formyltransferase (Purn) In Complex With Ches From
           Coxiella Burnetii
          Length = 215

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 27/65 (41%)

Query: 56  NEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTNKQPGTTKNTAKLDRETEELK 115
           N +P  +     G G   QAIIG +++ L I +R            K   + D  T  + 
Sbjct: 2   NREPLPIVVLISGNGTNLQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQADIPTHIIP 61

Query: 116 HEKVP 120
           HE+ P
Sbjct: 62  HEEFP 66


>pdb|3LDG|A Chain A, Crystal Structure Of Smu.472, A Putative Methyltransferase
           Complexed With Sah
          Length = 384

 Score = 27.7 bits (60), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 25/119 (21%)

Query: 74  QAIIGKMERALGIRLRVNAGTNKQPGTTKNTAKLD------------------RETEELK 115
           +A++GK  R LG+  +V  G     G  +  AK +                  R  EEL 
Sbjct: 16  EAVVGKELRNLGLDCQVENGRVLFKGNIETIAKSNLWLRSADRIKIVVGEFPARTFEELF 75

Query: 116 HEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
                LD    L  G Q      K + +K++ +P I       +GI  +AI+ K++   
Sbjct: 76  QGVYALDWENYLPLGCQFPVAKAKSVKSKLHNEPSI-------QGITKKAIVKKLQHYF 127


>pdb|4G5E|A Chain A, 2,4,6-Trichlorophenol 4-Monooxygenase
 pdb|4G5E|B Chain B, 2,4,6-Trichlorophenol 4-Monooxygenase
 pdb|4G5E|C Chain C, 2,4,6-Trichlorophenol 4-Monooxygenase
 pdb|4G5E|D Chain D, 2,4,6-Trichlorophenol 4-Monooxygenase
          Length = 517

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 59  PQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTNKQPGTTKNTAKL 107
           PQ V D+     +  Q++  ++   L I +  + GTNK P      AKL
Sbjct: 282 PQRVFDWLHYHALIRQSVRAELMAGLAILITEHIGTNKIPAVQTRVAKL 330


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.130    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,226,461
Number of Sequences: 62578
Number of extensions: 205199
Number of successful extensions: 451
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 14
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)