Query psy6501
Match_columns 174
No_of_seqs 155 out of 2262
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 19:44:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kpj_A SOS-response transcript 99.8 2.6E-18 9E-23 116.4 8.5 73 25-97 2-74 (94)
2 2jvl_A TRMBF1; coactivator, he 99.8 2.2E-18 7.6E-23 119.8 7.9 83 10-92 12-96 (107)
3 2ewt_A BLDD, putative DNA-bind 99.8 4.1E-18 1.4E-22 109.1 8.5 64 29-92 5-70 (71)
4 1y7y_A C.AHDI; helix-turn-heli 99.7 4E-18 1.4E-22 109.8 8.3 65 28-92 9-73 (74)
5 3omt_A Uncharacterized protein 99.7 9.9E-19 3.4E-23 113.0 4.3 64 31-94 7-70 (73)
6 3s8q_A R-M controller protein; 99.7 4.2E-18 1.4E-22 112.3 7.4 67 27-93 6-72 (82)
7 3ivp_A Putative transposon-rel 99.7 1.3E-17 4.4E-22 118.7 9.7 67 30-96 10-76 (126)
8 2b5a_A C.BCLI; helix-turn-heli 99.7 7.1E-18 2.4E-22 109.5 7.0 68 26-93 4-71 (77)
9 1x57_A Endothelial differentia 99.7 9.8E-18 3.4E-22 112.8 7.9 70 25-94 6-75 (91)
10 3op9_A PLI0006 protein; struct 99.7 4.3E-18 1.5E-22 119.1 6.3 68 29-96 6-73 (114)
11 3b7h_A Prophage LP1 protein 11 99.7 1.8E-17 6E-22 107.9 8.7 66 30-95 5-71 (78)
12 2r1j_L Repressor protein C2; p 99.7 4.2E-18 1.4E-22 107.8 5.2 62 32-93 5-66 (68)
13 3qq6_A HTH-type transcriptiona 99.7 1.2E-17 4E-22 109.7 7.4 66 29-94 7-73 (78)
14 3g5g_A Regulatory protein; tra 99.7 1E-17 3.5E-22 114.9 7.4 67 27-93 23-89 (99)
15 3kz3_A Repressor protein CI; f 99.7 2.5E-17 8.5E-22 108.3 8.5 64 29-92 9-72 (80)
16 2k9q_A Uncharacterized protein 99.7 5.1E-18 1.7E-22 110.7 5.1 63 31-93 1-63 (77)
17 3vk0_A NHTF, transcriptional r 99.7 2.5E-17 8.6E-22 115.4 8.6 70 24-93 13-82 (114)
18 1adr_A P22 C2 repressor; trans 99.7 1.1E-17 3.7E-22 108.3 6.3 64 32-95 5-68 (76)
19 3f6w_A XRE-family like protein 99.7 1.9E-17 6.4E-22 109.3 7.4 63 30-92 12-74 (83)
20 3lfp_A CSP231I C protein; tran 99.7 6.7E-17 2.3E-21 110.2 10.0 62 33-94 2-67 (98)
21 4ghj_A Probable transcriptiona 99.7 3.3E-17 1.1E-21 112.9 8.3 69 22-92 26-96 (101)
22 3mlf_A Transcriptional regulat 99.7 1E-17 3.5E-22 117.2 4.4 66 28-93 19-84 (111)
23 2wiu_B HTH-type transcriptiona 99.7 4.3E-17 1.5E-21 108.5 7.2 66 30-95 10-75 (88)
24 3bs3_A Putative DNA-binding pr 99.7 2E-17 7E-22 107.1 5.1 63 32-94 10-72 (76)
25 4ich_A Transcriptional regulat 99.7 1.3E-17 4.5E-22 134.7 5.0 125 30-155 28-160 (311)
26 2a6c_A Helix-turn-helix motif; 99.7 7E-17 2.4E-21 107.0 7.7 68 27-94 13-81 (83)
27 2l49_A C protein; P2 bacteriop 99.7 2.3E-17 8E-22 112.3 5.3 67 31-97 3-71 (99)
28 3t76_A VANU, transcriptional r 99.7 2.6E-17 8.8E-22 110.7 5.4 63 30-93 22-84 (88)
29 1zug_A Phage 434 CRO protein; 99.7 2.8E-17 9.7E-22 104.9 5.3 64 31-95 2-65 (71)
30 1lmb_3 Protein (lambda repress 99.7 1.7E-16 5.7E-21 106.6 8.7 65 29-93 14-78 (92)
31 2xi8_A Putative transcription 99.7 2.1E-17 7.1E-22 104.0 3.9 61 33-93 2-62 (66)
32 1r69_A Repressor protein CI; g 99.7 6.6E-17 2.2E-21 102.6 5.8 62 33-95 2-63 (69)
33 3f52_A CLP gene regulator (CLG 99.7 1.2E-16 4.1E-21 112.2 7.5 68 26-93 22-89 (117)
34 1b0n_A Protein (SINR protein); 99.7 3.3E-16 1.1E-20 108.5 8.8 64 33-96 2-66 (111)
35 2wus_R RODZ, putative uncharac 99.7 9.1E-17 3.1E-21 112.7 6.0 66 28-93 3-74 (112)
36 2ef8_A C.ECOT38IS, putative tr 99.7 2.6E-16 8.8E-21 103.7 7.6 64 30-93 8-75 (84)
37 2o38_A Hypothetical protein; a 99.6 4.8E-16 1.7E-20 110.2 8.8 70 28-97 36-106 (120)
38 1y9q_A Transcriptional regulat 99.6 4.8E-16 1.7E-20 117.8 9.0 70 26-95 5-74 (192)
39 3eus_A DNA-binding protein; st 99.6 5.3E-16 1.8E-20 103.4 8.1 59 30-88 12-70 (86)
40 3trb_A Virulence-associated pr 99.6 3.2E-16 1.1E-20 108.5 7.1 63 31-93 12-75 (104)
41 3fym_A Putative uncharacterize 99.6 1.1E-16 3.6E-21 115.1 4.4 63 31-93 2-70 (130)
42 2ppx_A AGR_C_3184P, uncharacte 99.6 1.5E-16 5.1E-21 108.8 4.9 62 30-92 28-89 (99)
43 3fmy_A HTH-type transcriptiona 99.6 5.7E-16 2E-20 100.3 6.9 60 32-92 11-70 (73)
44 2bnm_A Epoxidase; oxidoreducta 99.6 1.9E-15 6.3E-20 114.9 9.0 69 28-96 6-75 (198)
45 3r1f_A ESX-1 secretion-associa 99.6 4.5E-16 1.5E-20 112.5 5.2 63 31-93 6-80 (135)
46 3cec_A Putative antidote prote 99.6 1.4E-15 4.8E-20 104.6 7.1 63 30-92 16-78 (104)
47 2ofy_A Putative XRE-family tra 99.6 1.3E-15 4.3E-20 101.1 6.6 65 29-95 13-78 (86)
48 3kxa_A NGO0477 protein, putati 99.6 3.2E-16 1.1E-20 114.1 3.4 63 30-92 66-128 (141)
49 2ict_A Antitoxin HIGA; helix-t 99.6 3E-15 1E-19 101.0 7.0 61 32-92 8-69 (94)
50 2eby_A Putative HTH-type trans 99.6 2.1E-15 7.3E-20 105.1 5.6 62 32-93 10-72 (113)
51 3qwg_A ESX-1 secretion-associa 99.6 2.8E-15 9.7E-20 106.7 6.3 62 32-93 5-78 (123)
52 3bd1_A CRO protein; transcript 99.5 8E-15 2.7E-19 96.0 4.7 56 35-92 2-59 (79)
53 3u3w_A Transcriptional activat 99.5 1.4E-14 4.6E-19 115.1 6.5 66 30-96 3-68 (293)
54 2awi_A PRGX; repressor, pherom 99.5 1.6E-14 5.5E-19 117.8 4.8 64 31-95 2-65 (317)
55 3bdn_A Lambda repressor; repre 99.4 5.4E-14 1.8E-18 109.5 4.5 65 29-93 14-78 (236)
56 2p5t_A Putative transcriptiona 99.4 1.3E-14 4.6E-19 107.0 0.0 63 32-94 1-63 (158)
57 3o9x_A Uncharacterized HTH-typ 99.4 3.1E-13 1.1E-17 96.8 6.7 58 33-91 72-129 (133)
58 2qfc_A PLCR protein; TPR, HTH, 99.4 4.7E-14 1.6E-18 111.9 1.7 63 30-93 3-65 (293)
59 3pxp_A Helix-turn-helix domain 99.4 6.6E-13 2.3E-17 107.2 7.5 61 30-90 4-71 (292)
60 1neq_A DNA-binding protein NER 99.4 9.3E-13 3.2E-17 85.5 6.7 57 34-93 11-67 (74)
61 2fjr_A Repressor protein CI; g 99.3 1.6E-12 5.6E-17 97.9 6.3 62 29-93 6-67 (189)
62 2l1p_A DNA-binding protein SAT 99.3 2.9E-12 9.8E-17 83.2 4.4 53 31-87 20-72 (83)
63 3eus_A DNA-binding protein; st 99.2 9.8E-11 3.3E-15 77.6 7.7 54 121-174 13-66 (86)
64 2jvl_A TRMBF1; coactivator, he 99.2 8E-11 2.7E-15 81.3 7.2 72 103-174 15-88 (107)
65 3s8q_A R-M controller protein; 99.1 1.5E-10 5.1E-15 75.6 7.8 55 120-174 9-63 (82)
66 3qq6_A HTH-type transcriptiona 99.1 1.1E-10 3.9E-15 75.9 6.6 56 119-174 7-63 (78)
67 2ewt_A BLDD, putative DNA-bind 99.1 1.6E-10 5.3E-15 73.3 6.9 54 121-174 7-62 (71)
68 1y7y_A C.AHDI; helix-turn-heli 99.1 2.5E-10 8.6E-15 72.7 7.8 54 121-174 12-65 (74)
69 4ghj_A Probable transcriptiona 99.1 1.7E-10 5.7E-15 79.1 7.2 54 119-174 33-86 (101)
70 2r1j_L Repressor protein C2; p 99.1 2.4E-10 8.2E-15 71.5 7.2 53 122-174 5-57 (68)
71 3g5g_A Regulatory protein; tra 99.1 2E-10 6.8E-15 78.3 7.2 56 119-174 25-80 (99)
72 2b5a_A C.BCLI; helix-turn-heli 99.1 3.2E-10 1.1E-14 72.8 7.8 55 120-174 8-62 (77)
73 3f6w_A XRE-family like protein 99.1 1.9E-10 6.6E-15 75.2 6.7 54 121-174 13-66 (83)
74 2k9q_A Uncharacterized protein 99.1 2.2E-10 7.7E-15 74.0 6.7 52 123-174 3-54 (77)
75 3kz3_A Repressor protein CI; f 99.1 2.4E-10 8.3E-15 74.4 6.8 54 121-174 11-64 (80)
76 1adr_A P22 C2 repressor; trans 99.1 3.7E-10 1.3E-14 72.3 7.3 53 122-174 5-57 (76)
77 3fmy_A HTH-type transcriptiona 99.1 3.4E-10 1.1E-14 72.8 6.3 49 124-173 13-61 (73)
78 3b7h_A Prophage LP1 protein 11 99.1 5.4E-10 1.9E-14 71.9 7.2 54 121-174 6-60 (78)
79 2auw_A Hypothetical protein NE 99.0 4.7E-10 1.6E-14 83.5 7.5 58 24-81 74-139 (170)
80 1x57_A Endothelial differentia 99.0 4.8E-10 1.6E-14 74.7 6.7 57 118-174 9-65 (91)
81 3vk0_A NHTF, transcriptional r 99.0 4.9E-10 1.7E-14 78.0 6.9 56 119-174 18-73 (114)
82 3op9_A PLI0006 protein; struct 99.0 3.7E-10 1.3E-14 78.4 6.3 54 121-174 8-61 (114)
83 3omt_A Uncharacterized protein 99.0 3.9E-10 1.3E-14 72.1 5.8 51 124-174 10-60 (73)
84 2wiu_B HTH-type transcriptiona 99.0 5.3E-10 1.8E-14 73.7 6.6 55 120-174 10-64 (88)
85 2kpj_A SOS-response transcript 99.0 5.4E-10 1.9E-14 75.0 6.7 54 121-174 8-61 (94)
86 1lmb_3 Protein (lambda repress 99.0 6.7E-10 2.3E-14 74.0 6.8 55 120-174 15-69 (92)
87 3ivp_A Putative transposon-rel 99.0 6.3E-10 2.2E-14 78.6 6.8 55 120-174 10-64 (126)
88 3t76_A VANU, transcriptional r 99.0 6.7E-10 2.3E-14 74.2 6.4 50 124-174 26-75 (88)
89 3lfp_A CSP231I C protein; tran 99.0 4.1E-10 1.4E-14 76.2 5.5 52 123-174 2-57 (98)
90 2xi8_A Putative transcription 99.0 1.1E-09 3.6E-14 68.1 6.9 50 125-174 4-53 (66)
91 1r69_A Repressor protein CI; g 99.0 9.2E-10 3.2E-14 69.1 6.3 51 123-174 2-52 (69)
92 3f52_A CLP gene regulator (CLG 99.0 9.2E-10 3.1E-14 76.7 6.8 57 118-174 24-80 (117)
93 2a6c_A Helix-turn-helix motif; 99.0 1.6E-09 5.6E-14 71.1 7.2 55 120-174 16-71 (83)
94 3trb_A Virulence-associated pr 99.0 1E-09 3.5E-14 75.5 6.1 55 120-174 11-66 (104)
95 2ef8_A C.ECOT38IS, putative tr 99.0 1.9E-09 6.3E-14 70.3 7.0 53 121-173 9-61 (84)
96 1zug_A Phage 434 CRO protein; 98.9 1.7E-09 5.7E-14 68.2 6.1 52 122-174 3-54 (71)
97 3mlf_A Transcriptional regulat 98.9 3.7E-10 1.3E-14 78.5 3.1 55 120-174 21-75 (111)
98 2ppx_A AGR_C_3184P, uncharacte 98.9 1E-09 3.5E-14 74.4 4.9 52 122-174 30-81 (99)
99 2wus_R RODZ, putative uncharac 98.9 2.2E-09 7.6E-14 74.8 6.6 54 121-174 6-65 (112)
100 3fym_A Putative uncharacterize 98.9 1.6E-09 5.3E-14 77.4 5.9 53 122-174 3-61 (130)
101 3bs3_A Putative DNA-binding pr 98.9 2.2E-09 7.5E-14 68.7 6.1 51 124-174 12-62 (76)
102 2ict_A Antitoxin HIGA; helix-t 98.9 2.9E-09 1E-13 71.3 7.0 53 122-174 8-60 (94)
103 2l49_A C protein; P2 bacteriop 98.9 1.9E-09 6.6E-14 72.6 6.0 51 123-173 5-55 (99)
104 2o38_A Hypothetical protein; a 98.9 4.2E-09 1.4E-13 74.2 7.9 55 120-174 38-93 (120)
105 3cec_A Putative antidote prote 98.9 2.8E-09 9.6E-14 72.7 6.5 55 120-174 16-70 (104)
106 1nr3_A MTH0916, DNA-binding pr 98.9 4.9E-12 1.7E-16 89.6 -7.9 51 40-91 1-57 (122)
107 1b0n_A Protein (SINR protein); 98.9 3E-09 1E-13 73.0 6.1 52 123-174 2-54 (111)
108 1dw9_A Cyanate lyase; cyanate 98.9 6.1E-09 2.1E-13 76.1 7.9 63 30-92 11-73 (156)
109 1y9q_A Transcriptional regulat 98.8 7.8E-09 2.7E-13 77.8 7.1 54 121-174 10-63 (192)
110 2eby_A Putative HTH-type trans 98.8 5.1E-09 1.8E-13 72.4 5.4 53 122-174 10-63 (113)
111 2bnm_A Epoxidase; oxidoreducta 98.8 1.1E-08 3.8E-13 77.2 7.6 55 120-174 8-63 (198)
112 3bd1_A CRO protein; transcript 98.8 4.1E-09 1.4E-13 68.4 4.2 47 126-174 3-49 (79)
113 3kxa_A NGO0477 protein, putati 98.8 3.5E-09 1.2E-13 76.6 3.9 52 123-174 69-120 (141)
114 2ofy_A Putative XRE-family tra 98.8 1.9E-08 6.5E-13 66.0 7.1 52 121-174 15-67 (86)
115 1zx4_A P1 PARB, plasmid partit 98.7 5.9E-09 2E-13 79.0 4.3 62 30-92 10-90 (192)
116 3o9x_A Uncharacterized HTH-typ 98.7 1.8E-08 6.3E-13 71.6 6.0 45 124-168 73-117 (133)
117 3pxp_A Helix-turn-helix domain 98.6 7E-08 2.4E-12 77.7 7.3 54 121-174 5-65 (292)
118 2l1p_A DNA-binding protein SAT 98.6 2.6E-08 8.9E-13 64.6 3.9 50 121-174 20-69 (83)
119 1rzs_A Antirepressor, regulato 98.6 6.2E-08 2.1E-12 60.0 5.0 48 38-89 4-51 (61)
120 3g7d_A PHPD; non heme Fe(II) d 98.6 7.2E-08 2.5E-12 77.8 6.5 63 33-95 231-294 (443)
121 3r1f_A ESX-1 secretion-associa 98.6 6.7E-08 2.3E-12 69.4 5.7 53 122-174 7-71 (135)
122 3qwg_A ESX-1 secretion-associa 98.6 1.1E-07 3.8E-12 67.2 6.4 53 122-174 5-69 (123)
123 2p5t_A Putative transcriptiona 98.5 1.9E-08 6.3E-13 73.8 0.0 52 123-174 2-53 (158)
124 4ich_A Transcriptional regulat 98.5 1.9E-08 6.5E-13 80.8 0.0 54 121-174 29-82 (311)
125 3bdn_A Lambda repressor; repre 98.4 1.6E-07 5.4E-12 72.6 4.8 53 122-174 17-69 (236)
126 2h8r_A Hepatocyte nuclear fact 98.4 7E-07 2.4E-11 68.8 8.2 51 30-80 29-79 (221)
127 2auw_A Hypothetical protein NE 98.4 4.7E-07 1.6E-11 67.3 6.7 47 124-170 92-138 (170)
128 1uxc_A FRUR (1-57), fructose r 98.4 7.1E-07 2.4E-11 56.0 5.6 47 46-92 1-53 (65)
129 1neq_A DNA-binding protein NER 98.4 9.8E-07 3.3E-11 56.8 6.3 48 124-174 11-58 (74)
130 2pij_A Prophage PFL 6 CRO; tra 98.3 3.2E-07 1.1E-11 57.2 3.6 39 35-74 4-42 (67)
131 2l8n_A Transcriptional repress 98.3 1.2E-06 4.2E-11 55.3 5.4 48 45-92 9-59 (67)
132 1ic8_A Hepatocyte nuclear fact 98.3 2.8E-06 9.6E-11 64.5 7.9 49 30-78 28-76 (194)
133 2fjr_A Repressor protein CI; g 98.2 1.7E-06 5.9E-11 64.6 5.8 51 121-174 8-58 (189)
134 1dw9_A Cyanate lyase; cyanate 98.1 9E-06 3.1E-10 59.3 6.6 54 121-174 12-65 (156)
135 1s4k_A Putative cytoplasmic pr 98.1 6.6E-06 2.3E-10 56.9 5.5 52 32-83 3-56 (120)
136 1jhf_A LEXA repressor; LEXA SO 97.9 7.4E-06 2.5E-10 61.9 4.5 38 30-67 8-48 (202)
137 1nr3_A MTH0916, DNA-binding pr 97.9 1.2E-07 4.1E-12 66.7 -5.3 43 131-174 2-50 (122)
138 2hin_A GP39, repressor protein 97.8 2.3E-05 7.8E-10 49.9 4.4 39 47-86 12-50 (71)
139 2cw1_A SN4M; lambda CRO fold, 97.7 2.9E-05 1E-09 48.6 4.0 36 36-73 6-41 (65)
140 1rzs_A Antirepressor, regulato 97.7 5E-05 1.7E-09 46.7 4.5 37 135-174 10-46 (61)
141 2l0k_A Stage III sporulation p 97.7 7.3E-05 2.5E-09 50.1 5.2 54 34-87 9-63 (93)
142 1s4k_A Putative cytoplasmic pr 97.6 0.00013 4.6E-09 50.4 6.4 48 125-172 6-55 (120)
143 1xwr_A Regulatory protein CII; 97.5 1.3E-05 4.5E-10 54.1 -0.3 30 40-69 18-47 (97)
144 1uxc_A FRUR (1-57), fructose r 97.4 0.00018 6.3E-09 44.8 4.7 38 136-173 1-41 (65)
145 1zs4_A Regulatory protein CII; 97.4 0.00016 5.5E-09 47.2 3.7 42 43-88 22-63 (83)
146 2h8r_A Hepatocyte nuclear fact 97.4 0.00049 1.7E-08 52.9 7.0 50 120-169 29-78 (221)
147 1zx4_A P1 PARB, plasmid partit 97.2 0.00044 1.5E-08 52.2 5.4 54 120-174 10-79 (192)
148 2l8n_A Transcriptional repress 97.2 0.00072 2.5E-08 42.3 5.3 39 135-173 9-47 (67)
149 2pij_A Prophage PFL 6 CRO; tra 97.2 0.00038 1.3E-08 42.8 4.0 38 126-164 5-42 (67)
150 1jhg_A Trp operon repressor; c 97.1 0.00075 2.5E-08 45.7 5.2 53 32-84 43-97 (101)
151 3g7d_A PHPD; non heme Fe(II) d 97.1 0.00048 1.6E-08 55.8 4.6 53 122-174 230-283 (443)
152 1ic8_A Hepatocyte nuclear fact 97.0 0.0016 5.5E-08 49.2 6.8 48 119-166 27-74 (194)
153 1u78_A TC3 transposase, transp 97.0 0.013 4.5E-07 40.7 11.3 91 31-157 9-101 (141)
154 2ao9_A Phage protein; structur 96.9 0.0014 4.9E-08 47.7 5.5 39 45-85 48-87 (155)
155 2xsd_C POU domain, class 3, tr 96.9 0.0082 2.8E-07 44.0 9.7 53 31-85 16-74 (164)
156 1tc3_C Protein (TC3 transposas 96.9 0.0027 9.3E-08 35.9 5.5 33 35-68 12-44 (51)
157 2x48_A CAG38821; archeal virus 96.9 0.0026 8.9E-08 37.5 5.6 35 32-67 19-53 (55)
158 1au7_A Protein PIT-1, GHF-1; c 96.8 0.014 4.7E-07 41.9 10.1 53 31-85 6-64 (146)
159 1jko_C HIN recombinase, DNA-in 96.4 0.004 1.4E-07 35.6 3.8 33 36-69 13-45 (52)
160 2ovg_A Phage lambda CRO; trans 96.4 0.0034 1.2E-07 39.1 3.7 29 37-67 7-35 (66)
161 1e3o_C Octamer-binding transcr 96.1 0.013 4.6E-07 42.6 6.3 52 31-84 10-67 (160)
162 2hin_A GP39, repressor protein 96.1 0.007 2.4E-07 38.2 4.1 29 137-165 12-40 (71)
163 1jhf_A LEXA repressor; LEXA SO 96.0 0.006 2E-07 45.7 4.2 38 121-158 9-49 (202)
164 1k78_A Paired box protein PAX5 95.9 0.18 6.3E-06 35.4 11.5 39 28-67 32-70 (149)
165 2jn6_A Protein CGL2762, transp 95.8 0.013 4.3E-07 38.7 4.5 23 45-67 23-45 (97)
166 2w7n_A TRFB transcriptional re 95.6 0.021 7.2E-07 38.5 5.1 36 32-67 21-56 (101)
167 1x2l_A CUT-like 2, homeobox pr 95.6 0.038 1.3E-06 37.2 6.3 40 30-69 19-59 (101)
168 2elh_A CG11849-PA, LD40883P; s 95.5 0.028 9.4E-07 36.5 5.4 38 29-67 23-60 (87)
169 2k27_A Paired box protein PAX- 95.5 0.12 4.2E-06 36.8 9.4 39 30-69 27-65 (159)
170 2l0k_A Stage III sporulation p 95.5 0.022 7.4E-07 37.8 4.8 48 126-173 11-59 (93)
171 2csf_A DNA-binding protein SAT 95.3 0.059 2E-06 35.9 6.4 58 30-87 19-83 (101)
172 3kjx_A Transcriptional regulat 95.2 0.031 1E-06 44.6 5.7 49 43-91 8-59 (344)
173 2hsg_A Glucose-resistance amyl 95.1 0.035 1.2E-06 43.9 5.9 46 45-90 2-50 (332)
174 1xwr_A Regulatory protein CII; 95.1 0.0072 2.5E-07 40.5 1.5 29 131-159 19-47 (97)
175 3d1n_I POU domain, class 6, tr 95.1 0.11 3.9E-06 37.2 8.0 50 31-82 7-62 (151)
176 1r71_A Transcriptional repress 95.0 0.036 1.2E-06 41.1 5.3 50 30-81 38-87 (178)
177 1zs4_A Regulatory protein CII; 95.0 0.015 5E-07 37.8 2.7 26 134-159 23-48 (83)
178 2cw1_A SN4M; lambda CRO fold, 95.0 0.031 1.1E-06 34.6 4.1 34 127-162 7-40 (65)
179 1qpz_A PURA, protein (purine n 94.8 0.047 1.6E-06 43.4 5.8 45 46-90 1-48 (340)
180 3me5_A Cytosine-specific methy 94.8 0.025 8.7E-07 48.3 4.3 50 35-86 21-79 (482)
181 1j9i_A GPNU1 DBD;, terminase s 94.8 0.017 5.9E-07 35.7 2.4 24 46-69 3-26 (68)
182 2glo_A Brinker CG9653-PA; prot 94.6 0.077 2.6E-06 31.6 5.1 35 32-67 9-47 (59)
183 2pg4_A Uncharacterized protein 94.6 0.028 9.5E-07 36.8 3.3 42 24-65 2-51 (95)
184 2vz4_A Tipal, HTH-type transcr 94.6 0.04 1.4E-06 37.2 4.2 23 45-67 1-23 (108)
185 3oou_A LIN2118 protein; protei 94.5 0.48 1.6E-05 31.3 9.5 35 44-92 20-54 (108)
186 3lsg_A Two-component response 94.5 0.44 1.5E-05 31.2 9.2 34 45-92 19-52 (103)
187 1qgp_A Protein (double strande 94.2 0.045 1.5E-06 34.8 3.6 30 36-65 19-51 (77)
188 2k9s_A Arabinose operon regula 94.2 0.6 2E-05 30.8 9.5 46 33-92 5-53 (107)
189 3h5t_A Transcriptional regulat 94.2 0.037 1.3E-06 44.5 3.9 48 43-90 7-58 (366)
190 1vz0_A PARB, chromosome partit 94.2 0.078 2.7E-06 40.8 5.5 50 30-81 120-169 (230)
191 1pdn_C Protein (PRD paired); p 94.1 0.1 3.6E-06 35.1 5.6 38 29-67 18-55 (128)
192 2heo_A Z-DNA binding protein 1 94.1 0.085 2.9E-06 32.5 4.6 30 37-66 16-46 (67)
193 2o8x_A Probable RNA polymerase 94.1 0.089 3E-06 31.9 4.7 31 37-67 23-53 (70)
194 1x3u_A Transcriptional regulat 94.1 0.088 3E-06 32.8 4.7 46 43-88 29-78 (79)
195 3gp4_A Transcriptional regulat 94.0 0.14 4.7E-06 36.4 6.2 23 45-67 2-24 (142)
196 3frw_A Putative Trp repressor 94.0 0.13 4.4E-06 34.9 5.6 36 32-67 44-80 (107)
197 3l1p_A POU domain, class 5, tr 94.0 0.25 8.6E-06 35.6 7.6 54 30-85 12-71 (155)
198 3kor_A Possible Trp repressor; 94.0 0.11 3.7E-06 36.0 5.3 38 32-69 61-99 (119)
199 2w48_A Sorbitol operon regulat 93.8 0.086 2.9E-06 42.2 5.4 37 30-66 6-42 (315)
200 1wh8_A CUT-like 2, homeobox pr 93.8 0.2 6.9E-06 34.2 6.3 58 11-69 11-69 (111)
201 3gpv_A Transcriptional regulat 93.7 0.096 3.3E-06 37.5 4.9 23 45-67 16-38 (148)
202 1tc3_C Protein (TC3 transposas 93.7 0.19 6.4E-06 27.8 5.4 26 133-158 19-44 (51)
203 2p7v_B Sigma-70, RNA polymeras 93.7 0.086 2.9E-06 32.2 4.0 25 43-67 23-47 (68)
204 1xn7_A Hypothetical protein YH 93.6 0.051 1.7E-06 34.8 2.9 35 31-65 2-36 (78)
205 3hug_A RNA polymerase sigma fa 93.6 0.11 3.7E-06 33.7 4.7 31 37-67 45-75 (92)
206 2x48_A CAG38821; archeal virus 93.5 0.19 6.5E-06 29.1 5.2 32 125-157 22-53 (55)
207 1ku3_A Sigma factor SIGA; heli 93.5 0.13 4.4E-06 31.8 4.7 31 37-67 18-52 (73)
208 1wh6_A CUT-like 2, homeobox pr 93.4 0.1 3.5E-06 35.1 4.3 61 30-90 19-86 (101)
209 2jpc_A SSRB; DNA binding prote 93.4 0.1 3.6E-06 30.8 4.0 25 42-66 10-34 (61)
210 2jml_A DNA binding domain/tran 93.1 0.047 1.6E-06 34.8 2.2 23 45-67 5-27 (81)
211 2htj_A P fimbrial regulatory p 93.0 0.15 5.1E-06 32.2 4.5 30 37-66 6-35 (81)
212 2ox6_A Hypothetical protein SO 93.0 0.49 1.7E-05 33.0 7.3 40 35-74 10-49 (166)
213 1qbj_A Protein (double-strande 93.0 0.2 6.9E-06 32.1 5.1 29 37-65 16-47 (81)
214 2dk5_A DNA-directed RNA polyme 92.9 0.081 2.8E-06 34.8 3.1 32 35-66 24-57 (91)
215 1wiz_A DNA-binding protein SAT 92.8 0.39 1.3E-05 32.2 6.4 41 30-70 19-60 (101)
216 2o20_A Catabolite control prot 92.7 0.021 7.1E-07 45.4 0.0 47 44-90 4-53 (332)
217 1tty_A Sigma-A, RNA polymerase 92.7 0.19 6.4E-06 32.3 4.7 31 37-67 26-60 (87)
218 2ao9_A Phage protein; structur 92.6 0.16 5.3E-06 36.9 4.5 37 135-173 48-85 (155)
219 3oio_A Transcriptional regulat 92.4 0.75 2.5E-05 30.6 7.7 45 34-92 10-56 (113)
220 1hlv_A CENP-B, major centromer 92.3 0.23 7.9E-06 34.0 5.1 42 29-70 8-50 (131)
221 1fse_A GERE; helix-turn-helix 92.2 0.13 4.5E-06 31.4 3.4 24 43-66 24-47 (74)
222 1oyi_A Double-stranded RNA-bin 92.2 0.12 4.1E-06 33.4 3.1 35 32-66 17-51 (82)
223 1s7o_A Hypothetical UPF0122 pr 92.1 0.25 8.4E-06 33.7 4.9 31 37-67 30-60 (113)
224 1je8_A Nitrate/nitrite respons 92.0 0.23 7.9E-06 31.5 4.4 24 43-66 34-57 (82)
225 3c57_A Two component transcrip 92.0 0.26 8.8E-06 32.2 4.7 24 43-66 40-63 (95)
226 2k02_A Ferrous iron transport 91.9 0.066 2.3E-06 35.0 1.7 34 32-65 3-36 (87)
227 1z4h_A TORI, TOR inhibition pr 91.9 0.06 2E-06 33.0 1.4 28 46-73 11-38 (66)
228 3h5o_A Transcriptional regulat 91.9 0.03 1E-06 44.5 0.0 47 44-90 3-52 (339)
229 3mky_B Protein SOPB; partition 91.8 0.29 1E-05 36.5 5.4 42 31-72 27-69 (189)
230 2dg6_A Putative transcriptiona 91.6 0.86 3E-05 34.8 8.0 24 46-69 1-24 (222)
231 3e7l_A Transcriptional regulat 91.6 0.38 1.3E-05 29.0 4.9 34 34-67 21-54 (63)
232 1q06_A Transcriptional regulat 91.5 0.31 1E-05 34.2 5.0 23 46-68 1-23 (135)
233 3hh0_A Transcriptional regulat 91.5 0.27 9.3E-06 35.0 4.8 24 44-67 3-26 (146)
234 1sfx_A Conserved hypothetical 91.4 0.29 9.9E-06 31.8 4.6 34 33-66 22-55 (109)
235 1jhg_A Trp operon repressor; c 91.3 0.15 5.2E-06 34.2 3.0 37 134-170 56-93 (101)
236 1jko_C HIN recombinase, DNA-in 91.2 0.36 1.2E-05 26.9 4.3 27 133-159 19-45 (52)
237 2rn7_A IS629 ORFA; helix, all 91.2 0.17 5.9E-06 33.6 3.3 23 45-67 30-52 (108)
238 2o3f_A Putative HTH-type trans 91.0 0.44 1.5E-05 32.2 5.2 54 32-85 25-80 (111)
239 3bil_A Probable LACI-family tr 91.0 0.042 1.4E-06 44.0 0.0 45 46-90 9-56 (348)
240 3ulq_B Transcriptional regulat 90.9 0.37 1.3E-05 31.3 4.6 23 44-66 43-65 (90)
241 3jvd_A Transcriptional regulat 90.8 0.045 1.5E-06 43.6 0.0 47 44-90 5-54 (333)
242 2d1h_A ST1889, 109AA long hypo 90.7 0.22 7.4E-06 32.5 3.4 31 36-66 26-57 (109)
243 1xsv_A Hypothetical UPF0122 pr 90.7 0.35 1.2E-05 32.8 4.5 31 37-67 33-63 (113)
244 3dbi_A Sugar-binding transcrip 90.6 0.048 1.6E-06 43.3 0.0 46 46-91 4-52 (338)
245 2p5v_A Transcriptional regulat 90.5 0.45 1.5E-05 34.0 5.2 31 35-65 14-44 (162)
246 3e3m_A Transcriptional regulat 90.5 0.05 1.7E-06 43.6 0.0 49 43-91 10-61 (355)
247 3t72_q RNA polymerase sigma fa 90.4 0.43 1.5E-05 31.7 4.6 24 44-67 38-61 (99)
248 1r8d_A Transcription activator 90.2 0.29 9.8E-06 32.9 3.7 24 45-68 2-25 (109)
249 3bpv_A Transcriptional regulat 90.1 0.54 1.8E-05 31.9 5.2 39 28-66 26-64 (138)
250 2d5v_A Hepatocyte nuclear fact 90.1 0.6 2.1E-05 33.7 5.6 58 30-87 6-69 (164)
251 1umq_A Photosynthetic apparatu 90.0 0.6 2E-05 29.9 4.9 34 34-67 43-76 (81)
252 1jye_A Lactose operon represso 89.9 0.059 2E-06 43.1 0.0 45 46-90 4-51 (349)
253 3g3z_A NMB1585, transcriptiona 89.9 0.59 2E-05 32.2 5.3 42 25-66 25-66 (145)
254 3ctp_A Periplasmic binding pro 89.8 0.061 2.1E-06 42.6 0.0 45 46-90 3-50 (330)
255 1bl0_A Protein (multiple antib 89.7 1.2 4.2E-05 30.3 6.8 22 44-65 26-47 (129)
256 3iwf_A Transcription regulator 89.7 0.35 1.2E-05 32.6 3.8 51 32-82 21-73 (107)
257 3pvv_A Chromosomal replication 89.6 0.85 2.9E-05 30.4 5.6 66 69-153 2-68 (101)
258 2cg4_A Regulatory protein ASNC 89.6 0.58 2E-05 32.9 5.1 31 35-65 12-42 (152)
259 2o4a_A DNA-binding protein SAT 89.6 0.65 2.2E-05 30.7 4.9 40 31-70 10-50 (93)
260 3mn2_A Probable ARAC family tr 89.6 3 0.0001 27.2 9.5 22 44-65 17-38 (108)
261 3oop_A LIN2960 protein; protei 89.5 0.52 1.8E-05 32.3 4.8 39 28-66 34-72 (143)
262 2obp_A Putative DNA-binding pr 89.5 0.79 2.7E-05 30.4 5.3 38 29-66 14-57 (96)
263 3r0a_A Putative transcriptiona 89.4 0.34 1.2E-05 33.2 3.6 33 34-66 29-63 (123)
264 2glo_A Brinker CG9653-PA; prot 89.3 0.89 3E-05 26.7 5.0 25 133-157 19-47 (59)
265 3cuo_A Uncharacterized HTH-typ 89.2 0.18 6.2E-06 32.5 2.0 28 39-66 32-59 (99)
266 2nnn_A Probable transcriptiona 89.1 0.77 2.6E-05 31.1 5.3 39 28-66 35-73 (140)
267 3ech_A MEXR, multidrug resista 88.9 0.48 1.6E-05 32.6 4.2 38 29-66 35-72 (142)
268 2cfx_A HTH-type transcriptiona 88.8 0.47 1.6E-05 33.2 4.1 31 35-65 9-39 (144)
269 1b4a_A Arginine repressor; hel 88.8 0.51 1.8E-05 33.8 4.3 33 35-67 8-46 (149)
270 2hr3_A Probable transcriptiona 88.7 0.73 2.5E-05 31.6 5.0 38 29-66 33-71 (147)
271 2jn6_A Protein CGL2762, transp 88.6 0.75 2.6E-05 29.8 4.8 23 135-157 23-45 (97)
272 2w25_A Probable transcriptiona 88.6 0.49 1.7E-05 33.3 4.1 31 35-65 11-41 (150)
273 3me5_A Cytosine-specific methy 88.4 0.74 2.5E-05 39.2 5.7 38 125-164 21-64 (482)
274 2p5k_A Arginine repressor; DNA 88.4 0.63 2.2E-05 27.5 3.9 28 40-67 14-46 (64)
275 2rnj_A Response regulator prot 88.3 0.5 1.7E-05 30.4 3.7 24 43-66 42-65 (91)
276 3bdd_A Regulatory protein MARR 88.3 0.59 2E-05 31.8 4.3 33 34-66 34-66 (142)
277 2qvo_A Uncharacterized protein 88.3 0.35 1.2E-05 31.3 2.9 21 46-66 31-51 (95)
278 2rdp_A Putative transcriptiona 88.3 0.95 3.3E-05 31.1 5.4 37 29-65 40-76 (150)
279 1p4w_A RCSB; solution structur 88.2 0.42 1.4E-05 31.7 3.3 24 43-66 47-70 (99)
280 1ub9_A Hypothetical protein PH 88.2 0.36 1.2E-05 31.0 3.0 29 37-65 22-50 (100)
281 3nrv_A Putative transcriptiona 88.2 0.49 1.7E-05 32.7 3.8 38 29-66 38-75 (148)
282 2elh_A CG11849-PA, LD40883P; s 88.2 1 3.5E-05 28.7 5.1 25 133-157 36-60 (87)
283 3eco_A MEPR; mutlidrug efflux 88.1 0.63 2.2E-05 31.7 4.4 38 29-66 29-68 (139)
284 3bro_A Transcriptional regulat 88.1 0.84 2.9E-05 31.0 5.0 37 29-65 32-70 (141)
285 1jgs_A Multiple antibiotic res 88.1 1 3.5E-05 30.5 5.4 38 29-66 32-69 (138)
286 1on2_A Transcriptional regulat 88.0 1.1 3.8E-05 30.8 5.6 28 39-66 16-43 (142)
287 3k0l_A Repressor protein; heli 87.9 0.65 2.2E-05 32.7 4.4 35 32-66 47-81 (162)
288 1ntc_A Protein (nitrogen regul 87.8 0.57 2E-05 30.4 3.7 32 34-65 53-84 (91)
289 1j1v_A Chromosomal replication 87.8 1.1 3.9E-05 29.3 5.2 60 75-153 5-65 (94)
290 3kp7_A Transcriptional regulat 87.5 0.58 2E-05 32.5 3.9 32 34-66 41-72 (151)
291 2dbb_A Putative HTH-type trans 87.5 0.59 2E-05 32.8 4.0 31 35-65 13-43 (151)
292 4hbl_A Transcriptional regulat 87.4 0.59 2E-05 32.4 3.9 38 29-66 39-76 (149)
293 2fbi_A Probable transcriptiona 87.3 0.71 2.4E-05 31.4 4.2 38 29-66 34-71 (142)
294 1j9i_A GPNU1 DBD;, terminase s 87.2 0.38 1.3E-05 29.3 2.5 27 136-163 3-29 (68)
295 1y0u_A Arsenical resistance op 87.2 0.81 2.8E-05 29.6 4.2 23 43-65 41-63 (96)
296 1i1g_A Transcriptional regulat 87.1 0.63 2.2E-05 32.1 3.9 29 37-65 10-38 (141)
297 2a61_A Transcriptional regulat 87.1 1 3.4E-05 30.8 4.9 34 33-66 35-68 (145)
298 2w7n_A TRFB transcriptional re 87.1 0.49 1.7E-05 31.7 3.1 23 133-155 32-54 (101)
299 1yse_A DNA-binding protein SAT 87.0 0.74 2.5E-05 32.6 4.1 62 27-88 20-88 (141)
300 1d5y_A ROB transcription facto 87.0 2.1 7.3E-05 32.9 7.3 22 44-65 18-39 (292)
301 2pn6_A ST1022, 150AA long hypo 87.0 0.4 1.4E-05 33.6 2.8 30 36-65 8-37 (150)
302 2cyy_A Putative HTH-type trans 86.8 0.67 2.3E-05 32.6 3.9 31 35-65 11-41 (151)
303 1r1u_A CZRA, repressor protein 86.8 0.83 2.9E-05 30.1 4.2 24 43-66 37-60 (106)
304 3mzy_A RNA polymerase sigma-H 86.7 0.85 2.9E-05 31.6 4.4 27 41-67 120-146 (164)
305 1rp3_A RNA polymerase sigma fa 86.7 0.83 2.8E-05 33.9 4.6 29 39-67 197-225 (239)
306 1u2w_A CADC repressor, cadmium 86.6 0.52 1.8E-05 32.1 3.1 30 37-66 48-77 (122)
307 1ku9_A Hypothetical protein MJ 86.5 0.53 1.8E-05 32.3 3.2 38 29-66 24-62 (152)
308 2eth_A Transcriptional regulat 86.4 0.97 3.3E-05 31.5 4.6 34 33-66 46-79 (154)
309 2oz6_A Virulence factor regula 86.4 0.51 1.7E-05 34.2 3.2 22 45-66 164-185 (207)
310 2lkp_A Transcriptional regulat 86.4 1.1 3.9E-05 29.9 4.8 29 37-66 38-66 (119)
311 3s2w_A Transcriptional regulat 86.4 0.5 1.7E-05 33.2 3.1 31 36-66 55-85 (159)
312 2oqg_A Possible transcriptiona 86.3 0.81 2.8E-05 30.2 3.9 29 37-66 27-55 (114)
313 2jml_A DNA binding domain/tran 86.3 0.36 1.2E-05 30.6 2.0 23 135-157 5-27 (81)
314 2ia0_A Putative HTH-type trans 86.3 0.71 2.4E-05 33.5 3.9 31 35-65 21-51 (171)
315 1or7_A Sigma-24, RNA polymeras 86.3 0.92 3.1E-05 32.6 4.5 31 37-67 148-178 (194)
316 1g2h_A Transcriptional regulat 86.2 1.3 4.5E-05 26.4 4.5 33 34-67 23-55 (61)
317 2zkz_A Transcriptional repress 86.1 0.8 2.7E-05 29.9 3.8 28 39-66 35-62 (99)
318 2fa5_A Transcriptional regulat 86.0 0.84 2.9E-05 31.9 4.1 32 35-66 53-84 (162)
319 2pex_A Transcriptional regulat 86.0 0.92 3.2E-05 31.4 4.3 33 34-66 50-82 (153)
320 2wte_A CSA3; antiviral protein 85.9 1.3 4.3E-05 34.2 5.3 36 31-66 152-187 (244)
321 3ryp_A Catabolite gene activat 85.8 0.56 1.9E-05 34.1 3.2 22 45-66 167-188 (210)
322 3k2z_A LEXA repressor; winged 85.8 1.3 4.5E-05 32.6 5.2 36 30-65 7-44 (196)
323 1eto_A FIS, factor for inversi 85.7 1.5 5E-05 29.0 4.9 33 34-66 60-92 (98)
324 4fx0_A Probable transcriptiona 85.7 0.91 3.1E-05 31.8 4.1 22 45-66 52-73 (148)
325 2fbh_A Transcriptional regulat 85.7 0.74 2.5E-05 31.5 3.6 31 35-65 41-72 (146)
326 1z91_A Organic hydroperoxide r 85.7 0.8 2.7E-05 31.4 3.8 39 28-66 37-75 (147)
327 2fmy_A COOA, carbon monoxide o 85.6 1.3 4.3E-05 32.5 5.1 23 44-66 166-188 (220)
328 1j5y_A Transcriptional regulat 85.6 0.71 2.4E-05 33.9 3.6 30 37-66 27-57 (187)
329 2hoe_A N-acetylglucosamine kin 85.6 0.32 1.1E-05 39.7 1.9 31 35-66 24-54 (380)
330 1lj9_A Transcriptional regulat 85.6 0.73 2.5E-05 31.5 3.5 32 35-66 33-64 (144)
331 3bj6_A Transcriptional regulat 85.6 0.85 2.9E-05 31.5 3.9 35 32-66 41-75 (152)
332 3dv8_A Transcriptional regulat 85.5 1.4 4.9E-05 32.0 5.3 22 45-66 169-190 (220)
333 3mkl_A HTH-type transcriptiona 85.5 5.6 0.00019 26.5 8.0 26 44-69 22-47 (120)
334 2zcw_A TTHA1359, transcription 85.4 0.6 2E-05 33.9 3.2 22 45-66 146-167 (202)
335 1r71_A Transcriptional repress 85.1 2 7E-05 31.5 5.9 45 124-170 42-86 (178)
336 1u78_A TC3 transposase, transp 85.0 2 7E-05 29.1 5.7 36 32-67 64-101 (141)
337 2gxg_A 146AA long hypothetical 84.9 1.1 3.7E-05 30.6 4.2 32 34-66 40-71 (146)
338 4dyq_A Gene 1 protein; GP1, oc 84.9 0.71 2.4E-05 32.5 3.2 46 43-92 26-72 (140)
339 1z05_A Transcriptional regulat 84.8 0.9 3.1E-05 37.6 4.3 33 34-66 42-74 (429)
340 2nyx_A Probable transcriptiona 84.7 0.82 2.8E-05 32.5 3.6 33 34-66 48-80 (168)
341 3e6m_A MARR family transcripti 84.7 0.82 2.8E-05 32.2 3.5 32 35-66 57-88 (161)
342 4fe7_A Xylose operon regulator 84.6 10 0.00036 30.6 10.7 48 31-92 305-354 (412)
343 4ev0_A Transcription regulator 84.6 0.69 2.4E-05 33.7 3.2 23 44-66 162-184 (216)
344 3fm5_A Transcriptional regulat 84.6 1.4 4.8E-05 30.4 4.7 32 34-65 42-74 (150)
345 3iwz_A CAP-like, catabolite ac 84.5 0.69 2.3E-05 34.1 3.2 21 46-66 188-208 (230)
346 3qao_A LMO0526 protein, MERR-l 84.5 1.3 4.3E-05 34.4 4.7 48 44-91 2-66 (249)
347 3dew_A Transcriptional regulat 84.4 1.8 6.1E-05 30.6 5.3 43 24-66 4-49 (206)
348 3d0s_A Transcriptional regulat 84.4 0.71 2.4E-05 34.1 3.2 22 45-66 177-198 (227)
349 2e1c_A Putative HTH-type trans 84.4 0.99 3.4E-05 32.7 3.9 31 35-65 31-61 (171)
350 3tgn_A ADC operon repressor AD 84.4 1.2 4E-05 30.5 4.1 32 34-66 41-72 (146)
351 3bja_A Transcriptional regulat 84.3 0.69 2.4E-05 31.3 2.9 38 29-66 31-68 (139)
352 1ft9_A Carbon monoxide oxidati 84.3 0.72 2.5E-05 34.0 3.2 21 46-66 164-184 (222)
353 1s3j_A YUSO protein; structura 84.3 1 3.6E-05 31.1 3.9 33 34-66 40-72 (155)
354 2qww_A Transcriptional regulat 84.3 0.94 3.2E-05 31.4 3.6 31 35-65 45-75 (154)
355 1sfu_A 34L protein; protein/Z- 84.2 0.39 1.3E-05 30.4 1.4 36 31-66 15-50 (75)
356 3b02_A Transcriptional regulat 84.2 0.57 2E-05 33.8 2.6 22 45-66 139-160 (195)
357 3e97_A Transcriptional regulat 84.2 0.72 2.5E-05 34.1 3.2 23 44-66 174-196 (231)
358 3hsr_A HTH-type transcriptiona 84.2 0.48 1.6E-05 32.6 2.0 33 34-66 39-71 (140)
359 3jw4_A Transcriptional regulat 84.1 0.76 2.6E-05 31.7 3.1 33 33-65 43-77 (148)
360 1gdt_A GD resolvase, protein ( 83.9 1.8 6.2E-05 31.4 5.2 33 36-69 150-182 (183)
361 2frh_A SARA, staphylococcal ac 83.9 0.71 2.4E-05 31.4 2.8 32 34-65 40-73 (127)
362 2zhg_A Redox-sensitive transcr 83.7 1 3.6E-05 32.2 3.7 24 44-67 10-33 (154)
363 1pdn_C Protein (PRD paired); p 83.7 2.4 8.1E-05 28.0 5.4 35 122-157 21-55 (128)
364 3cjn_A Transcriptional regulat 83.7 1 3.5E-05 31.5 3.6 33 34-66 55-87 (162)
365 2jt1_A PEFI protein; solution 83.7 1.4 4.9E-05 27.8 3.9 35 32-66 8-45 (77)
366 1zyb_A Transcription regulator 83.5 0.8 2.7E-05 34.1 3.2 22 45-66 186-207 (232)
367 3cdh_A Transcriptional regulat 83.5 0.86 2.9E-05 31.7 3.1 32 35-66 47-78 (155)
368 2h09_A Transcriptional regulat 83.4 2.2 7.5E-05 29.8 5.3 37 30-66 38-75 (155)
369 2fxa_A Protease production reg 83.4 1.6 5.4E-05 32.4 4.8 41 26-66 43-83 (207)
370 3i4p_A Transcriptional regulat 83.3 0.75 2.6E-05 32.9 2.8 30 36-65 8-37 (162)
371 3dkw_A DNR protein; CRP-FNR, H 83.3 0.64 2.2E-05 34.2 2.5 23 44-66 177-199 (227)
372 1z6r_A MLC protein; transcript 83.1 0.81 2.8E-05 37.5 3.3 32 34-65 19-50 (406)
373 2ox6_A Hypothetical protein SO 83.0 4.3 0.00015 28.3 6.3 43 126-168 11-53 (166)
374 2x4h_A Hypothetical protein SS 83.0 2.1 7.1E-05 29.2 5.0 24 43-66 29-52 (139)
375 3jth_A Transcription activator 83.0 0.52 1.8E-05 30.5 1.7 22 44-65 35-56 (98)
376 1iuf_A Centromere ABP1 protein 82.9 0.36 1.2E-05 34.1 0.9 39 30-68 11-59 (144)
377 1q1h_A TFE, transcription fact 82.8 1.4 4.9E-05 29.0 3.9 21 45-65 33-53 (110)
378 2gau_A Transcriptional regulat 82.8 0.86 2.9E-05 33.7 3.1 23 44-66 179-201 (232)
379 1e3o_C Octamer-binding transcr 82.7 1.3 4.3E-05 32.0 3.8 39 121-159 10-54 (160)
380 3deu_A Transcriptional regulat 82.6 1.5 5.2E-05 31.1 4.3 37 29-65 51-88 (166)
381 3la7_A Global nitrogen regulat 82.6 0.91 3.1E-05 34.1 3.2 23 44-66 192-214 (243)
382 2p7v_B Sigma-70, RNA polymeras 82.4 2 6.8E-05 25.7 4.2 25 133-157 23-47 (68)
383 3fx3_A Cyclic nucleotide-bindi 82.3 0.72 2.5E-05 34.2 2.5 23 44-66 177-199 (237)
384 2o8x_A Probable RNA polymerase 82.2 2.7 9.4E-05 24.8 4.8 28 129-156 25-52 (70)
385 3e6c_C CPRK, cyclic nucleotide 82.1 0.96 3.3E-05 34.0 3.2 23 44-66 176-198 (250)
386 3nqo_A MARR-family transcripti 82.0 1.5 5.1E-05 31.9 4.1 33 34-66 44-78 (189)
387 4aik_A Transcriptional regulat 81.8 2.1 7.2E-05 30.0 4.7 31 36-66 36-67 (151)
388 2ovg_A Phage lambda CRO; trans 81.7 1.4 5E-05 26.9 3.3 23 137-159 15-37 (66)
389 1tbx_A ORF F-93, hypothetical 81.6 0.69 2.4E-05 29.9 1.9 30 36-65 13-46 (99)
390 3hug_A RNA polymerase sigma fa 81.5 2.6 8.9E-05 26.9 4.7 31 127-157 45-75 (92)
391 2jpc_A SSRB; DNA binding prote 81.4 2 6.9E-05 24.9 3.9 26 132-157 10-35 (61)
392 2kko_A Possible transcriptiona 81.4 1.1 3.8E-05 29.7 2.9 24 43-66 36-59 (108)
393 4b8x_A SCO5413, possible MARR- 81.4 1.2 4.2E-05 31.0 3.3 23 44-66 50-72 (147)
394 3kcc_A Catabolite gene activat 81.2 1.1 3.7E-05 34.1 3.2 22 45-66 217-238 (260)
395 1k78_A Paired box protein PAX5 81.1 3.1 0.00011 28.8 5.4 37 120-157 34-70 (149)
396 3gbg_A TCP pilus virulence reg 81.0 14 0.00047 28.0 9.6 23 45-67 185-207 (276)
397 1vz0_A PARB, chromosome partit 81.0 2.6 9E-05 32.1 5.3 48 121-170 121-168 (230)
398 1xmk_A Double-stranded RNA-spe 81.0 1.5 5.2E-05 27.9 3.3 32 34-65 14-46 (79)
399 1fse_A GERE; helix-turn-helix 80.9 3.8 0.00013 24.5 5.1 34 122-157 15-48 (74)
400 1l9z_H Sigma factor SIGA; heli 80.8 1.8 6.3E-05 36.3 4.6 30 38-67 384-417 (438)
401 2r0q_C Putative transposon TN5 80.5 3.7 0.00013 30.4 5.9 36 35-71 166-201 (209)
402 2o0m_A Transcriptional regulat 80.5 0.33 1.1E-05 39.3 0.0 35 33-67 22-56 (345)
403 2oa4_A SIR5; structure, struct 80.5 2.3 7.8E-05 28.4 4.1 30 38-67 43-72 (101)
404 1qgp_A Protein (double strande 80.4 2 6.9E-05 26.9 3.8 31 125-155 18-51 (77)
405 1ku3_A Sigma factor SIGA; heli 80.1 3.3 0.00011 25.1 4.7 24 134-157 29-52 (73)
406 3f3x_A Transcriptional regulat 80.1 1.6 5.5E-05 29.8 3.5 31 34-65 40-70 (144)
407 1xn7_A Hypothetical protein YH 80.1 2.7 9.3E-05 26.5 4.3 31 125-155 6-36 (78)
408 1rp3_A RNA polymerase sigma fa 79.9 10 0.00036 27.7 8.3 38 119-157 188-225 (239)
409 2jrt_A Uncharacterized protein 79.8 2.6 9E-05 27.7 4.3 46 22-67 23-71 (95)
410 2lfw_A PHYR sigma-like domain; 79.5 1.2 4E-05 31.4 2.7 30 37-66 101-130 (157)
411 3tqn_A Transcriptional regulat 79.5 4.5 0.00015 26.9 5.6 36 30-65 11-53 (113)
412 1je8_A Nitrate/nitrite respons 79.4 4.1 0.00014 25.5 5.0 35 121-157 24-58 (82)
413 3dn7_A Cyclic nucleotide bindi 79.4 0.38 1.3E-05 34.6 0.0 25 43-67 166-190 (194)
414 1v4r_A Transcriptional repress 79.0 2 6.9E-05 28.0 3.6 38 29-66 12-56 (102)
415 3c57_A Two component transcrip 78.9 4.2 0.00014 26.2 5.1 36 119-156 28-63 (95)
416 3pqk_A Biofilm growth-associat 78.9 2 6.7E-05 27.9 3.5 23 43-65 34-56 (102)
417 2bv6_A MGRA, HTH-type transcri 78.6 0.99 3.4E-05 30.8 2.0 31 35-65 41-71 (142)
418 3kor_A Possible Trp repressor; 78.6 3.9 0.00013 28.1 5.0 25 133-157 73-97 (119)
419 2k27_A Paired box protein PAX- 78.6 3.4 0.00012 29.0 4.9 36 121-157 28-63 (159)
420 1uly_A Hypothetical protein PH 78.4 1.6 5.4E-05 32.4 3.2 29 36-65 25-53 (192)
421 3e7l_A Transcriptional regulat 78.3 4.5 0.00015 24.0 4.7 33 124-156 21-53 (63)
422 2vz4_A Tipal, HTH-type transcr 78.2 1.5 5.1E-05 29.2 2.7 28 135-162 1-29 (108)
423 1z7u_A Hypothetical protein EF 78.0 2.6 9E-05 28.0 4.0 27 38-65 29-56 (112)
424 2htj_A P fimbrial regulatory p 77.9 3.9 0.00013 25.3 4.6 26 130-155 9-34 (81)
425 1r8d_A Transcription activator 77.8 2 6.7E-05 28.6 3.2 24 135-158 2-25 (109)
426 1tty_A Sigma-A, RNA polymerase 77.6 4 0.00014 25.8 4.6 38 119-157 19-60 (87)
427 2xsd_C POU domain, class 3, tr 77.4 2.7 9.1E-05 30.4 4.1 39 121-159 16-60 (164)
428 1qbj_A Protein (double-strande 77.4 5 0.00017 25.4 5.0 31 125-155 14-47 (81)
429 1au7_A Protein PIT-1, GHF-1; c 77.3 2.5 8.4E-05 29.9 3.8 39 121-159 6-50 (146)
430 1okr_A MECI, methicillin resis 77.3 1.7 5.7E-05 29.0 2.8 31 36-66 15-49 (123)
431 3ulq_B Transcriptional regulat 77.3 5.3 0.00018 25.6 5.2 37 119-157 30-66 (90)
432 3b73_A PHIH1 repressor-like pr 76.9 2.1 7.3E-05 28.9 3.2 32 34-65 16-49 (111)
433 2jsc_A Transcriptional regulat 76.4 1.8 6.3E-05 29.1 2.8 24 43-66 32-55 (118)
434 2bgc_A PRFA; bacterial infecti 76.2 1.7 5.7E-05 32.4 2.8 39 45-83 169-221 (238)
435 3hot_A Transposable element ma 76.2 22 0.00075 27.8 9.6 92 32-157 10-108 (345)
436 4a0z_A Transcription factor FA 76.0 2.7 9.4E-05 31.1 3.9 38 37-74 18-55 (190)
437 3rkx_A Biotin-[acetyl-COA-carb 75.9 3 0.0001 33.4 4.4 31 36-66 8-40 (323)
438 1r1t_A Transcriptional repress 75.8 2.8 9.7E-05 28.4 3.7 23 44-66 58-80 (122)
439 3neu_A LIN1836 protein; struct 75.6 5.7 0.00019 27.0 5.2 37 29-65 14-57 (125)
440 1z0x_A Transcriptional regulat 75.6 3.6 0.00012 30.3 4.5 36 30-65 7-46 (220)
441 2kfs_A Conserved hypothetical 75.6 1.9 6.7E-05 30.8 2.8 44 44-91 30-73 (148)
442 3clo_A Transcriptional regulat 75.6 3.7 0.00013 31.4 4.7 36 29-66 198-233 (258)
443 2hzt_A Putative HTH-type trans 75.5 2.1 7.3E-05 28.2 2.9 23 43-65 25-48 (107)
444 3ppb_A Putative TETR family tr 75.5 6.4 0.00022 27.3 5.7 37 31-67 12-51 (195)
445 2f2e_A PA1607; transcription f 75.4 3.1 0.00011 29.2 3.9 23 43-65 35-57 (146)
446 2cob_A LCOR protein; MLR2, KIA 75.3 5.4 0.00018 24.7 4.4 37 32-69 18-54 (70)
447 1z4h_A TORI, TOR inhibition pr 75.3 0.73 2.5E-05 27.9 0.5 28 136-163 11-38 (66)
448 1x2l_A CUT-like 2, homeobox pr 75.1 6.5 0.00022 26.2 5.1 39 120-158 19-58 (101)
449 3qkx_A Uncharacterized HTH-typ 75.0 5.4 0.00018 27.6 5.2 35 32-66 12-49 (188)
450 1umq_A Photosynthetic apparatu 75.0 5.7 0.00019 25.2 4.7 33 124-156 43-75 (81)
451 3bqz_B HTH-type transcriptiona 74.9 4.1 0.00014 28.5 4.6 24 44-67 21-44 (194)
452 3dcf_A Transcriptional regulat 74.9 6 0.00021 28.1 5.5 37 30-66 33-72 (218)
453 3boq_A Transcriptional regulat 74.9 0.83 2.8E-05 31.9 0.7 30 36-65 52-82 (160)
454 3lwj_A Putative TETR-family tr 74.8 2.5 8.5E-05 30.0 3.3 35 33-67 17-54 (202)
455 3u2r_A Regulatory protein MARR 74.7 2 7E-05 30.2 2.9 31 35-65 50-82 (168)
456 1u8b_A ADA polyprotein; protei 74.5 2.6 8.8E-05 28.8 3.2 24 43-66 91-114 (133)
457 3by6_A Predicted transcription 74.3 6.5 0.00022 26.8 5.3 36 30-65 13-55 (126)
458 3egq_A TETR family transcripti 74.1 2.3 8E-05 29.3 3.0 34 33-66 9-45 (170)
459 3rqi_A Response regulator prot 74.0 5.9 0.0002 28.0 5.2 37 34-70 145-181 (184)
460 2fq4_A Transcriptional regulat 74.0 2.6 8.9E-05 29.9 3.3 42 32-78 16-60 (192)
461 3vp5_A Transcriptional regulat 73.7 6.2 0.00021 27.9 5.3 34 32-65 16-52 (189)
462 1l9z_H Sigma factor SIGA; heli 73.7 7.7 0.00026 32.5 6.5 24 134-157 394-417 (438)
463 2ek5_A Predicted transcription 73.6 6.3 0.00022 27.0 5.1 35 31-65 7-48 (129)
464 1o5l_A Transcriptional regulat 73.5 0.69 2.3E-05 34.0 0.0 24 44-67 163-186 (213)
465 1s7o_A Hypothetical UPF0122 pr 73.5 6 0.00021 26.5 4.8 29 129-157 32-60 (113)
466 1u3e_M HNH homing endonuclease 73.4 2.8 9.7E-05 30.3 3.4 26 46-71 136-161 (174)
467 3cta_A Riboflavin kinase; stru 73.1 2.2 7.6E-05 32.1 2.8 21 45-65 27-47 (230)
468 3lhq_A Acrab operon repressor 73.0 2.8 9.6E-05 29.9 3.3 22 45-66 34-55 (220)
469 2zcm_A Biofilm operon icaabcd 73.0 7.4 0.00025 27.3 5.6 23 44-66 26-48 (192)
470 2w48_A Sorbitol operon regulat 72.8 5.3 0.00018 31.5 5.1 33 124-156 10-42 (315)
471 2g7s_A Transcriptional regulat 72.8 2.6 8.9E-05 29.4 3.0 22 44-65 27-48 (194)
472 1hlv_A CENP-B, major centromer 72.8 5.8 0.0002 26.7 4.7 41 120-160 9-50 (131)
473 3szt_A QCSR, quorum-sensing co 72.7 3.1 0.00011 31.5 3.6 24 43-66 188-211 (237)
474 1l0o_C Sigma factor; bergerat 72.7 0.74 2.5E-05 34.2 0.0 29 39-67 208-236 (243)
475 2rn7_A IS629 ORFA; helix, all 72.7 3 0.0001 27.3 3.1 22 136-157 31-52 (108)
476 2iai_A Putative transcriptiona 72.5 4.4 0.00015 29.7 4.3 22 44-65 49-70 (230)
477 3nnr_A Transcriptional regulat 72.5 6.4 0.00022 28.5 5.3 22 45-66 25-46 (228)
478 2q0o_A Probable transcriptiona 72.5 5.1 0.00017 30.1 4.7 25 43-67 188-212 (236)
479 3knw_A Putative transcriptiona 72.4 3 0.0001 29.7 3.3 22 45-66 34-55 (212)
480 2v57_A TETR family transcripti 72.4 3 0.0001 29.2 3.3 23 44-66 31-53 (190)
481 3vpr_A Transcriptional regulat 72.3 3 0.0001 29.4 3.3 23 44-66 22-44 (190)
482 2d6y_A Putative TETR family re 72.1 7.1 0.00024 27.9 5.4 38 32-69 12-52 (202)
483 3kz9_A SMCR; transcriptional r 72.1 3.1 0.0001 29.4 3.3 36 31-66 20-58 (206)
484 3hrs_A Metalloregulator SCAR; 72.0 3 0.0001 31.2 3.3 24 43-66 18-41 (214)
485 3cwr_A Transcriptional regulat 72.0 5.8 0.0002 27.9 4.8 22 44-65 36-57 (208)
486 1mkm_A ICLR transcriptional re 71.8 4 0.00014 31.1 4.1 30 37-66 14-44 (249)
487 3f1b_A TETR-like transcription 71.8 5.6 0.00019 27.9 4.7 34 33-66 19-55 (203)
488 3bhq_A Transcriptional regulat 71.8 3.7 0.00013 29.5 3.7 23 44-66 31-53 (211)
489 3ljl_A Transcriptional regulat 71.5 2.5 8.5E-05 29.2 2.6 36 33-68 19-57 (156)
490 1rr7_A Middle operon regulator 71.4 6.8 0.00023 27.1 4.8 26 42-67 89-114 (129)
491 3mzy_A RNA polymerase sigma-H 71.4 6.8 0.00023 26.8 4.9 37 118-156 109-145 (164)
492 2k02_A Ferrous iron transport 71.4 3.4 0.00012 26.7 3.0 31 125-155 6-36 (87)
493 1y6u_A XIS, excisionase from t 71.3 2.3 7.8E-05 26.3 2.1 25 44-68 15-39 (70)
494 2eh3_A Transcriptional regulat 71.3 3.5 0.00012 28.8 3.4 22 44-65 21-42 (179)
495 1x3u_A Transcriptional regulat 71.3 7.2 0.00025 23.6 4.5 24 133-156 29-52 (79)
496 2fbk_A Transcriptional regulat 71.2 2.2 7.4E-05 30.6 2.3 19 46-64 87-105 (181)
497 3frw_A Putative Trp repressor 71.1 9.4 0.00032 25.6 5.2 25 133-157 56-80 (107)
498 3uj3_X DNA-invertase; helix-tu 71.0 0.85 2.9E-05 33.5 0.0 34 36-70 150-183 (193)
499 1xsv_A Hypothetical UPF0122 pr 71.0 6.9 0.00024 26.2 4.7 30 127-156 33-62 (113)
500 3dpj_A Transcription regulator 70.8 6.4 0.00022 27.5 4.8 22 45-66 28-49 (194)
No 1
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=99.76 E-value=2.6e-18 Score=116.40 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=67.4
Q ss_pred ccccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCCCC
Q psy6501 25 KHEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTNKQ 97 (174)
Q Consensus 25 ~~~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~~~ 97 (174)
..+..++.+|.+|+.+|+.+||||++||+.+|||+++|++||+|.+.|+.+.+.+||++|||+++||+.....
T Consensus 2 ~~~~~~~~~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~~~~l~~~~~~ 74 (94)
T 2kpj_A 2 VKDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKL 74 (94)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHSCSCC
T ss_pred CccHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcCHHHHhcCCCc
Confidence 3455678999999999999999999999999999999999999999999999999999999999999965543
No 2
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=99.75 E-value=2.2e-18 Score=119.83 Aligned_cols=83 Identities=34% Similarity=0.534 Sum_probs=79.5
Q ss_pred CCccccccccchhhcccccchHHHHHHHHHHHH--HcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcc
Q psy6501 10 TTKNTAKLDRETEELKHEKVPLDLAKLLMQGRQ--AKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIR 87 (174)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ig~~ik~~R~--~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~ 87 (174)
+..+..+||+.++.+++..+.+.+|.+|+.+|+ .+||||++||+.+|+|+++|++||+|.+.|+.+.+.+||++|||+
T Consensus 12 ~~~~~~~~d~~~~~~~~~~~~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~ 91 (107)
T 2jvl_A 12 EGQRLTKVDRSDDIIKPKTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVK 91 (107)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCB
T ss_pred cccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 556788999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy6501 88 LRVNA 92 (174)
Q Consensus 88 ~~~l~ 92 (174)
++++.
T Consensus 92 ~~e~~ 96 (107)
T 2jvl_A 92 LRGAN 96 (107)
T ss_dssp SSSSS
T ss_pred Hhhhc
Confidence 99864
No 3
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=99.75 E-value=4.1e-18 Score=109.09 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhC--CCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKIN--EKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~ig--vs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
+...+|.+|+.+|+.+|+||++||+.+| +|+++|++||+|...|+.+.+.+||++|||+++||+
T Consensus 5 ~~~~~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~~~~l~ 70 (71)
T 2ewt_A 5 YAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL 70 (71)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGGGC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHc
Confidence 4668999999999999999999999999 999999999999999999999999999999999987
No 4
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=99.75 E-value=4e-18 Score=109.78 Aligned_cols=65 Identities=28% Similarity=0.173 Sum_probs=62.5
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 28 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 28 ~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
...+.+|.+|+.+|+.+|+||.+||+.+|+|+++|++||+|.+.|+.+.+.+||++|||+++||+
T Consensus 9 ~~~~~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~~l~ 73 (74)
T 1y7y_A 9 ADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHc
Confidence 34678999999999999999999999999999999999999999999999999999999999997
No 5
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=99.74 E-value=9.9e-19 Score=112.96 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCC
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGT 94 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~ 94 (174)
+.++++|+.+|+.+|+||++||+.+|||+++|++||+|...|+.+.+.+||++|||+++||+..
T Consensus 7 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l~~~ 70 (73)
T 3omt_A 7 RKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVS 70 (73)
T ss_dssp CCCCBCHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhcC
Confidence 4678999999999999999999999999999999999999999999999999999999999964
No 6
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=99.74 E-value=4.2e-18 Score=112.29 Aligned_cols=67 Identities=18% Similarity=0.101 Sum_probs=63.6
Q ss_pred ccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 27 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 27 ~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
+.+...+|.+|+.+|+.+||||++||+.+|+|+++|++||+|.+.|+.+.+.+||++|+|+++||+.
T Consensus 6 ~~~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~~~~l~~ 72 (82)
T 3s8q_A 6 SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE 72 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence 3466789999999999999999999999999999999999999999999999999999999999983
No 7
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=99.73 E-value=1.3e-17 Score=118.71 Aligned_cols=67 Identities=12% Similarity=0.188 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCCC
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTNK 96 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~~ 96 (174)
++.||.+|+.+|+.+||||++||+.+|||+++|++||+|.+.|+.+.+.+||++|||+++||+....
T Consensus 10 ~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~ 76 (126)
T 3ivp_A 10 FRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPAS 76 (126)
T ss_dssp THHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCCCc
Confidence 6789999999999999999999999999999999999999999999999999999999999997544
No 8
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=99.73 E-value=7.1e-18 Score=109.54 Aligned_cols=68 Identities=22% Similarity=0.169 Sum_probs=64.2
Q ss_pred cccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 26 HEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 26 ~~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
...+...+|.+|+.+|+.+||||.+||+.+|+|+++|++||+|.+.|+.+.+.+||++|||+++||+.
T Consensus 4 ~~~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~~~~l~~ 71 (77)
T 2b5a_A 4 EIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFR 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhc
Confidence 34567789999999999999999999999999999999999999999999999999999999999983
No 9
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=99.73 E-value=9.8e-18 Score=112.75 Aligned_cols=70 Identities=54% Similarity=0.921 Sum_probs=65.5
Q ss_pred ccccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCC
Q psy6501 25 KHEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGT 94 (174)
Q Consensus 25 ~~~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~ 94 (174)
.++.+.+.+|.+|+.+|+.+||||++||+.+|+|+++|++||+|...|+.+.+.+||++|+|+++||+..
T Consensus 6 ~~~~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~l~~g 75 (91)
T 1x57_A 6 SGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIG 75 (91)
T ss_dssp CSSCCCCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSSTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHccC
Confidence 4556778899999999999999999999999999999999999999999999999999999999998743
No 10
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=99.73 E-value=4.3e-18 Score=119.10 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCCC
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTNK 96 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~~ 96 (174)
+++.+|.+|+.+|+.+||||++||+.+|||+++|++||+|.+.|+.+.+.+||++|||+++||++...
T Consensus 6 ~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~l~~~~~ 73 (114)
T 3op9_A 6 IQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQ 73 (114)
T ss_dssp CCCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhcCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999996554
No 11
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=99.73 E-value=1.8e-17 Score=107.90 Aligned_cols=66 Identities=21% Similarity=0.136 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCcccccccCCC
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERALGIRLRVNAGTN 95 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~-~P~~~~l~~la~~L~v~~~~l~~~~ 95 (174)
.+.+|.+|+.+|+.+|+||.+||+.+|+|+++|++||+|.. .|+.+.+.+||++|||+++||+...
T Consensus 5 ~~~~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~~~~l~~~~ 71 (78)
T 3b7h_A 5 GEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFDFP 71 (78)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHHTCST
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHhcCC
Confidence 57899999999999999999999999999999999999999 9999999999999999999999543
No 12
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=99.72 E-value=4.2e-18 Score=107.83 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
.+|++|+.+|+.+|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||+++||+.
T Consensus 5 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l~~ 66 (68)
T 2r1j_L 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 66 (68)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999974
No 13
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=99.72 E-value=1.2e-17 Score=109.66 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcC-CCCCCHHHHHHHHHHhCcccccccCC
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGG-RGIPNQAIIGKMERALGIRLRVNAGT 94 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G-~~~P~~~~l~~la~~L~v~~~~l~~~ 94 (174)
....+|.+|+.+|+++||||++||+++|||+++|++||+| ...|+.+.+.+||++|||+++||+..
T Consensus 7 ~~~~~~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~l~~~ 73 (78)
T 3qq6_A 7 HHHMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDE 73 (78)
T ss_dssp -CTTHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHHHHHHS
T ss_pred CCCCccHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHHhCC
Confidence 3457999999999999999999999999999999999999 89999999999999999999999853
No 14
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=99.72 E-value=1e-17 Score=114.93 Aligned_cols=67 Identities=18% Similarity=0.101 Sum_probs=63.7
Q ss_pred ccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 27 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 27 ~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
+.+...||.+|+.+|+.+||||++||+++|||+++|++||+|.+.|+.+.+.+||++|||++++|+.
T Consensus 23 ~~~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~l~~ 89 (99)
T 3g5g_A 23 SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE 89 (99)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence 3466789999999999999999999999999999999999999999999999999999999999983
No 15
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=99.72 E-value=2.5e-17 Score=108.26 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
+++.++.+|+.+|+++||||.+||+.+|||+++|++||+|++.|+.+.+.+||++|||++++|.
T Consensus 9 ~~~~l~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~~~~l~ 72 (80)
T 3kz3_A 9 DARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFS 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHh
Confidence 3568999999999999999999999999999999999999999999999999999999999887
No 16
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=5.1e-18 Score=110.73 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
|.+|.+|+.+|+.+||||++||+++|||+++|++||+|...|+.+.+.+||++|||+++||+.
T Consensus 1 m~~~~~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~ 63 (77)
T 2k9q_A 1 MELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFD 63 (77)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHHHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHhC
Confidence 358999999999999999999999999999999999999999999999999999999999984
No 17
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=99.71 E-value=2.5e-17 Score=115.43 Aligned_cols=70 Identities=27% Similarity=0.195 Sum_probs=65.7
Q ss_pred cccccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 24 LKHEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 24 ~~~~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
.++..+...+|.+||.+|+.+||||++||+++|+|+++|++||+|++.|+.+.+.+||++|||+++||+.
T Consensus 13 ~~~~~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~l~~ 82 (114)
T 3vk0_A 13 PDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLL 82 (114)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSCHHHHTS
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhC
Confidence 3445667889999999999999999999999999999999999999999999999999999999999985
No 18
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=99.71 E-value=1.1e-17 Score=108.27 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCC
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTN 95 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~ 95 (174)
.+|++|+.+|+.+|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||+++||+...
T Consensus 5 ~~~~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l~~~~ 68 (76)
T 1adr_A 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGD 68 (76)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhcCC
Confidence 6999999999999999999999999999999999999999999999999999999999999543
No 19
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=99.71 E-value=1.9e-17 Score=109.28 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
.+.+|.+|+.+|+.+||||++||+.+|+|+++|++||+|++.|+.+.+.+||++|||+++||+
T Consensus 12 ~~~~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~l~ 74 (83)
T 3f6w_A 12 YQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALL 74 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 568999999999999999999999999999999999999999999999999999999999998
No 20
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=99.71 E-value=6.7e-17 Score=110.22 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHH----HHHHHcCCCCCCHHHHHHHHHHhCcccccccCC
Q psy6501 33 LAKLLMQGRQAKGWSQKDLATKINEKPQI----VNDYEGGRGIPNQAIIGKMERALGIRLRVNAGT 94 (174)
Q Consensus 33 ig~~ik~~R~~~gltq~eLA~~igvs~~~----is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~ 94 (174)
||.+|+.+|+.+||||++||+.+|+|+++ |++||+|.+.|+.+.+.+||++|||+++||++.
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~~l~~~ 67 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTP 67 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGGGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCC
Confidence 79999999999999999999999999999 999999999999999999999999999999963
No 21
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=99.71 E-value=3.3e-17 Score=112.85 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=60.7
Q ss_pred hhcccccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccc--cccc
Q psy6501 22 EELKHEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL--RVNA 92 (174)
Q Consensus 22 ~~~~~~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~--~~l~ 92 (174)
..+....+...+|++||.+|+++||||++||+++|||+++|++||+|+ |+++.+.+||.+||++. +.|+
T Consensus 26 ~~~~~~~l~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E~G~--~~~~~l~~i~~aL~~~~~ld~ll 96 (101)
T 4ghj_A 26 KHVTAAALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGK--VQLDIMIAILMALDLTEQIDLFI 96 (101)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTC--CBHHHHHHHHHHTTCCGGGGGSS
T ss_pred hhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHCCC--CCHHHHHHHHHHcCCCccHHHcC
Confidence 455666778899999999999999999999999999999999999997 46678999999999964 4555
No 22
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=99.69 E-value=1e-17 Score=117.21 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=62.6
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 28 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 28 ~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
.++..+|++|+.+|+.+||||++||+.+|||+++|++||+|.+.|+.+.+.+||++|||+++||+.
T Consensus 19 ~~~~~~g~~Lk~~R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l~~ 84 (111)
T 3mlf_A 19 YFQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFL 84 (111)
T ss_dssp SCCCSSCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGGEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhC
Confidence 345578999999999999999999999999999999999999999999999999999999999984
No 23
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=99.69 E-value=4.3e-17 Score=108.52 Aligned_cols=66 Identities=26% Similarity=0.425 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCC
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTN 95 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~ 95 (174)
.+.+|.+|+.+|+.+|+||++||+.+|+|+++|++||+|...|+.+.+.+||++|||+++||++..
T Consensus 10 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l~~~~ 75 (88)
T 2wiu_B 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKN 75 (88)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC---
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHhccCC
Confidence 578999999999999999999999999999999999999999999999999999999999999544
No 24
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=99.69 E-value=2e-17 Score=107.07 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCC
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGT 94 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~ 94 (174)
.+|++|+.+|+.+|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||+++||+..
T Consensus 10 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l~~~ 72 (76)
T 3bs3_A 10 MMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLING 72 (76)
T ss_dssp CCCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBC-
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhcC
Confidence 489999999999999999999999999999999999999999999999999999999999953
No 25
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=99.69 E-value=1.3e-17 Score=134.73 Aligned_cols=125 Identities=9% Similarity=0.071 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCCCCCCCCcccchhhh
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTNKQPGTTKNTAKLDR 109 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~~~~~~~~~~~~l~~ 109 (174)
.+.+|++||.+|+++||||++||+++|||+++||+||+|++.|+.+.|.+||++|||+++||++................
T Consensus 28 ~~~~~~~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 107 (311)
T 4ich_A 28 SDELRRRVRGLIHSRPGAQREFAAAIGLDESKLSKSLNGTRRFSPHELVRIAEHSGVTVNWLINGRDDARTVAAVPAPTA 107 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChhhhhcCCCccccccCCCCccc
Confidence 46899999999999999999999999999999999999999999999999999999999999965443211000000000
Q ss_pred -hh-------hhhhcccccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHH
Q psy6501 110 -ET-------EELKHEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDY 155 (174)
Q Consensus 110 -~~-------~~~~~~~~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~ 155 (174)
.. .......+......++ ..+--.+.|..++|+..|+++.++..|
T Consensus 108 ~~~~~~~~~~~~~~r~~il~aa~~l~-~~~G~~~~T~~~IA~~AGvs~gtlY~y 160 (311)
T 4ich_A 108 RSRSAPAGEPQSEARRRILETAWRLI-ARRGYHNVRIHDIASELGTSNATIHYH 160 (311)
T ss_dssp ---------CCHHHHHHHHHHHHHHH-HHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred ccCCCCCccchhhHHHHHHHHHHHHH-HHcCCccCCHHHHHHHhCCCchhHHHh
Confidence 00 0000011111111111 122225589999999999999988766
No 26
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=99.69 E-value=7e-17 Score=106.99 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=63.2
Q ss_pred ccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCcccccccCC
Q psy6501 27 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERALGIRLRVNAGT 94 (174)
Q Consensus 27 ~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~-~P~~~~l~~la~~L~v~~~~l~~~ 94 (174)
......+|.+|+.+|+.+||||.+||+.+|+|+++|++||+|+. .|+.+.+.+||++|||+++|++.+
T Consensus 13 ~~~~~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~~~~~l~~~ 81 (83)
T 2a6c_A 13 MKMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINIKD 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCCCCC
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCeEEEeCC
Confidence 34467899999999999999999999999999999999999998 599999999999999999999853
No 27
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=99.68 E-value=2.3e-17 Score=112.31 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHH--hCcccccccCCCCC
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERA--LGIRLRVNAGTNKQ 97 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~--L~v~~~~l~~~~~~ 97 (174)
|.+|.+|+.+|+.+||||.+||+.+|+|+++|++||+|.+.|+.+.+.+||++ |+|+++||+.....
T Consensus 3 m~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~~~v~~~~l~~~~~~ 71 (99)
T 2l49_A 3 NTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMTNQIA 71 (99)
T ss_dssp CCTTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSSSSSSSSSSTTTSSCCC
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCHHHHHcCCCC
Confidence 46899999999999999999999999999999999999999999999999999 99999999965543
No 28
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=99.68 E-value=2.6e-17 Score=110.72 Aligned_cols=63 Identities=5% Similarity=-0.080 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
|+..+++|+.+|+++||||.|||+++|||+++|++||+|+. |+.+.+.+||++|+|++++|+.
T Consensus 22 M~i~~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~-~s~~~l~kIa~~L~v~~~~L~~ 84 (88)
T 3t76_A 22 MRVSYNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNEN-VSLTVLLAICEYLNCDFGDIIE 84 (88)
T ss_dssp EEEECHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCC-CCHHHHHHHHHHHTCCGGGTCE
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC-cCHHHHHHHHHHHCcCHHHHhc
Confidence 44678899999999999999999999999999999999986 8999999999999999999983
No 29
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=99.68 E-value=2.8e-17 Score=104.92 Aligned_cols=64 Identities=23% Similarity=0.104 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCC
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTN 95 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~ 95 (174)
+.+|.+|+.+|+.+|+||.+||+.+|+|+++|++||+|...|... +.+||++|||+++||+...
T Consensus 2 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~-l~~i~~~l~~~~~~l~~~~ 65 (71)
T 1zug_A 2 QTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRF-LFEIAMALNCDPVWLQYGT 65 (71)
T ss_dssp CSHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCST-HHHHHHHTTSCHHHHHHSC
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCChHH-HHHHHHHHCCCHHHHhCCC
Confidence 468999999999999999999999999999999999999887644 9999999999999998543
No 30
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=99.68 E-value=1.7e-16 Score=106.63 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
+.+.++..|+.+|+.+||||++||+.+|+|+++|++||+|.+.|+.+.+.+||++|||+++||+.
T Consensus 14 ~~~~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l~~ 78 (92)
T 1lmb_3 14 DARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhh
Confidence 45678999999999999999999999999999999999999999999999999999999999983
No 31
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=99.68 E-value=2.1e-17 Score=104.01 Aligned_cols=61 Identities=23% Similarity=0.153 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 33 ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
+|.+|+.+|+.+|+||++||+.+|+|+++|++||+|...|+.+.+.+||++|||+++||+.
T Consensus 2 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l~~ 62 (66)
T 2xi8_A 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQ 62 (66)
T ss_dssp EEECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence 5678999999999999999999999999999999999999999999999999999999985
No 32
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=99.67 E-value=6.6e-17 Score=102.65 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCC
Q psy6501 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTN 95 (174)
Q Consensus 33 ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~ 95 (174)
||++|+.+|+.+||||.+||+.+|+|+++|++||+|...|+.. +.+||++|||+++||+...
T Consensus 2 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~-l~~la~~l~~~~~~l~~~~ 63 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRF-LPELASALGVSVDWLLNGT 63 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTT-HHHHHHHTTCCHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchH-HHHHHHHHCcCHHHHhCCC
Confidence 7999999999999999999999999999999999999988877 9999999999999998533
No 33
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=99.67 E-value=1.2e-16 Score=112.17 Aligned_cols=68 Identities=21% Similarity=0.216 Sum_probs=64.0
Q ss_pred cccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 26 HEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 26 ~~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
...+...||.+|+.+|+.+||||++||+.+|||+++|++||+|.+.|+.+.+.+||++|||++++|+.
T Consensus 22 ~~~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l~~ 89 (117)
T 3f52_A 22 EPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLI 89 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHHh
Confidence 34567789999999999999999999999999999999999999999999999999999999999883
No 34
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=99.66 E-value=3.3e-16 Score=108.53 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcC-CCCCCHHHHHHHHHHhCcccccccCCCC
Q psy6501 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGG-RGIPNQAIIGKMERALGIRLRVNAGTNK 96 (174)
Q Consensus 33 ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G-~~~P~~~~l~~la~~L~v~~~~l~~~~~ 96 (174)
||.+|+.+|+.+||||.+||+.+|+|+++|++||+| ...|+.+.+.+||++|||+++||++...
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~~l~~~~~ 66 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKH 66 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHCCTT
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHHhcCCC
Confidence 689999999999999999999999999999999999 8999999999999999999999996543
No 35
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=99.66 E-value=9.1e-17 Score=112.66 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=60.2
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCC------CHHHHHHHHHHhCcccccccC
Q psy6501 28 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIP------NQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 28 ~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P------~~~~l~~la~~L~v~~~~l~~ 93 (174)
+..+.+|.+||.+|+.+||||++||+++|||+++|++||+|...| +...+.+||++|||++++|+.
T Consensus 3 ~~~~~lG~~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA~~Lgv~~~~L~~ 74 (112)
T 2wus_R 3 EKWKELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLK 74 (112)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHHHHhCcCHHHHHH
Confidence 446789999999999999999999999999999999999999765 357899999999999999983
No 36
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=99.66 E-value=2.6e-16 Score=103.71 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH----HHHHhCcccccccC
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGK----MERALGIRLRVNAG 93 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~----la~~L~v~~~~l~~ 93 (174)
++.+|.+|+.+|+.+||||++||+.+|+|+++|++||+|.+.|+.+.+.+ ||.+|+|+++||+.
T Consensus 8 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~~l~~ 75 (84)
T 2ef8_A 8 YRCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLK 75 (84)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHHHHHc
Confidence 57899999999999999999999999999999999999999999766655 55555999999983
No 37
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=99.65 E-value=4.8e-16 Score=110.20 Aligned_cols=70 Identities=14% Similarity=0.022 Sum_probs=64.8
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCcccccccCCCCC
Q psy6501 28 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERALGIRLRVNAGTNKQ 97 (174)
Q Consensus 28 ~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~-~P~~~~l~~la~~L~v~~~~l~~~~~~ 97 (174)
.+...+|.+|+.+|+.+||||+|||+++|+|+++|++||+|+. .|+.+.+.+||++|||+++|++.+...
T Consensus 36 ~~~~~lg~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~Lgv~~~~l~~~~~~ 106 (120)
T 2o38_A 36 QTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIRKKPR 106 (120)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCcEEeecCCCc
Confidence 4567799999999999999999999999999999999999998 999999999999999999999965443
No 38
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=99.64 E-value=4.8e-16 Score=117.80 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=65.4
Q ss_pred cccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCC
Q psy6501 26 HEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTN 95 (174)
Q Consensus 26 ~~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~ 95 (174)
...+.+.+|.+||.+|+.+||||++||+++|+|+++|++||+|.+.|+.+.+.+||++|+|+++||+...
T Consensus 5 ~~~~~~~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~~ 74 (192)
T 1y9q_A 5 DVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFAND 74 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTTS
T ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHcCCC
Confidence 3445678999999999999999999999999999999999999999999999999999999999999643
No 39
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=99.64 E-value=5.3e-16 Score=103.43 Aligned_cols=59 Identities=22% Similarity=0.149 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccc
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~ 88 (174)
...||.+|+.+|+.+||||++||+.+|+|+++|++||+|.+.|+.+.+.+||++|||+.
T Consensus 12 ~~~~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~ 70 (86)
T 3eus_A 12 HVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGLD 70 (86)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCc
Confidence 34699999999999999999999999999999999999999999999999999999974
No 40
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=99.64 E-value=3.2e-16 Score=108.50 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=60.1
Q ss_pred HHHHHHHHH-HHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 31 LDLAKLLMQ-GRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 31 ~~ig~~ik~-~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
...|++|++ +|+.+||||.+||+.+|||+++||+||+|++.|+.+.+.+||++|||+++||++
T Consensus 12 ~~pG~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs~~~ll~ 75 (104)
T 3trb_A 12 IHPGEILAEELGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFWLN 75 (104)
T ss_dssp CCHHHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence 457999996 899999999999999999999999999999999999999999999999999984
No 41
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=99.64 E-value=1.1e-16 Score=115.07 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH------HHHHHHHHHhCcccccccC
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQ------AIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~------~~l~~la~~L~v~~~~l~~ 93 (174)
+.+|++||++|+++||||+|||+++|+|+++|++||+|...|++ +.+.++|++|||++++|+.
T Consensus 2 ~~~G~~lr~~R~~~gltq~elA~~~gis~~~is~iE~g~~~~~~~~~~~~~~l~~ia~~L~v~~~~l~~ 70 (130)
T 3fym_A 2 KTVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQ 70 (130)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCchhhhHHHHHHHHHHHhCCCHHHHHH
Confidence 36999999999999999999999999999999999999988777 7799999999999999984
No 42
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=99.64 E-value=1.5e-16 Score=108.81 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
.+.+|.+|+.+|+.+||||++||+.+|||+++|++||+|.+.|+.. +.+||++|+|+++||+
T Consensus 28 ~~~~~~~lk~~R~~~glsq~elA~~lgvs~~~is~~E~G~~~p~~~-~~~l~~~l~~~~~~l~ 89 (99)
T 2ppx_A 28 SAPRMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQP-ARAYLKIIAVDPEGTA 89 (99)
T ss_dssp ----CCHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHH-HHHHHHHHHHCHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHH-HHHHHHHHCcCHHHHH
Confidence 4679999999999999999999999999999999999999999998 8899999999999987
No 43
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=99.63 E-value=5.7e-16 Score=100.29 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
..|++|+.+|+..||||+|||+.+|||+++|++||+|.+.|+...+ +++.+|+++++||.
T Consensus 11 ~~g~~lr~~R~~~gltq~elA~~~gvs~~tis~~E~G~~~p~~~~~-~l~~~l~~~p~~l~ 70 (73)
T 3fmy_A 11 VAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPSTI-KLLRVLDKHPELLN 70 (73)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHHH-HHHHHHHHCGGGHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHH-HHHHHHCCCHHHHH
Confidence 4699999999999999999999999999999999999999999988 99999999998863
No 44
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=99.61 E-value=1.9e-15 Score=114.91 Aligned_cols=69 Identities=22% Similarity=0.364 Sum_probs=64.9
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCcccccccCCCC
Q psy6501 28 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERALGIRLRVNAGTNK 96 (174)
Q Consensus 28 ~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~-~P~~~~l~~la~~L~v~~~~l~~~~~ 96 (174)
...+.+|.+||.+|+.+||||++||+++|+|+++|++||+|.. .|+.+.|.+||++|+|+++||+....
T Consensus 6 ~~~~~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~~l~~~~~ 75 (198)
T 2bnm_A 6 TASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAG 75 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSCCCC
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHEEccCC
Confidence 3467899999999999999999999999999999999999999 99999999999999999999996543
No 45
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=99.61 E-value=4.5e-16 Score=112.53 Aligned_cols=63 Identities=10% Similarity=0.118 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHH------HcCCCHHHHHHHhC-----CCHHHHHHHHcCCC-CCCHHHHHHHHHHhCcccccccC
Q psy6501 31 LDLAKLLMQGRQ------AKGWSQKDLATKIN-----EKPQIVNDYEGGRG-IPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 31 ~~ig~~ik~~R~------~~gltq~eLA~~ig-----vs~~~is~~E~G~~-~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
..|++||+.+|+ .++|||++||+.+| +|++|||+||+|.+ .|+.+.|.+||++|||+++||++
T Consensus 6 ~~~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f~V~~~yl~~ 80 (135)
T 3r1f_A 6 TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTD 80 (135)
T ss_dssp CCHHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHHTSCTHHHHC
T ss_pred HHHHHHHHHHHHhhcccCCCCCCHHHHHHHHcccCCCcCHHHHHHHHCCCCCCCCHHHHHHHHHHhCCCHHHHcC
Confidence 469999999999 57899999999999 99999999999997 89999999999999999999995
No 46
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=99.60 E-value=1.4e-15 Score=104.62 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
...+|++|+.+|+.+|+||.+||+.+|+|+++|++||+|.+.|+.+.+.+||++|||+++||+
T Consensus 16 ~~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~v~~~~ll 78 (104)
T 3cec_A 16 PIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWL 78 (104)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHCcCHHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999987
No 47
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=99.60 E-value=1.3e-15 Score=101.13 Aligned_cols=65 Identities=23% Similarity=0.189 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCcccccccCCC
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERALGIRLRVNAGTN 95 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~-~P~~~~l~~la~~L~v~~~~l~~~~ 95 (174)
....+|.+|+.+|+.+ ||++||+++|||+++|++||+|.. .|+.+.+.+||++|||+++||+...
T Consensus 13 ~~~~~g~~l~~~R~~~--sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~~l~~~~ 78 (86)
T 2ofy_A 13 RGQRLGELLRSARGDM--SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVV 78 (86)
T ss_dssp HHHHHHHHHHHHHTTS--CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHC--CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHhccc
Confidence 3467999999999999 999999999999999999999998 9999999999999999999999644
No 48
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=99.60 E-value=3.2e-16 Score=114.08 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
+..+|.+|+.+|+.+||||++||+.+|+|+++|++||+|.+.|+.+.+.+||++|||+++||+
T Consensus 66 ~~~~g~~L~~~R~~~glTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~lgv~~~~l~ 128 (141)
T 3kxa_A 66 LKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVR 128 (141)
T ss_dssp HHHSSCCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999998
No 49
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=99.58 E-value=3e-15 Score=101.05 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccc-ccc
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLR-VNA 92 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~-~l~ 92 (174)
.+|++|+.+|+.+|+||.+||+.+|||+++|++||+|.+.|+.+.+.+||++|||+++ ||.
T Consensus 8 ~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l~v~~~~~l~ 69 (94)
T 2ict_A 8 RPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLN 69 (94)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHH
T ss_pred ChhHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999 554
No 50
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=99.57 E-value=2.1e-15 Score=105.10 Aligned_cols=62 Identities=6% Similarity=0.041 Sum_probs=60.0
Q ss_pred HHHHHHHH-HHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 32 DLAKLLMQ-GRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 32 ~ig~~ik~-~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
.+|++|+. +|+.+|+||.+||+.+|+|+++|++||+|.+.|+.+.+.+||++|||+++||++
T Consensus 10 ~~g~~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~~~~~~l~~ 72 (113)
T 2eby_A 10 TPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLN 72 (113)
T ss_dssp CHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHHc
Confidence 58999998 999999999999999999999999999999999999999999999999999984
No 51
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=99.57 E-value=2.8e-15 Score=106.66 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=59.3
Q ss_pred HHHHHHHHHHH------HcCCCHHHHHHHhC-----CCHHHHHHHHcCCC-CCCHHHHHHHHHHhCcccccccC
Q psy6501 32 DLAKLLMQGRQ------AKGWSQKDLATKIN-----EKPQIVNDYEGGRG-IPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 32 ~ig~~ik~~R~------~~gltq~eLA~~ig-----vs~~~is~~E~G~~-~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
.|++||+.+|+ ..+|||++||+.+| +|+++||+||+|.+ .|+.+.|.+||++|||+++||++
T Consensus 5 ~~a~RL~~L~~~~~~~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~~yl~~ 78 (123)
T 3qwg_A 5 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTD 78 (123)
T ss_dssp CHHHHHHHHHHHSSCTTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHTTSCTHHHHC
T ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHcccCCCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHcC
Confidence 58999999999 77899999999998 99999999999997 89999999999999999999995
No 52
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=99.52 E-value=8e-15 Score=95.98 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC--ccccccc
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALG--IRLRVNA 92 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~--v~~~~l~ 92 (174)
++|+.+|+.+| ||.+||+.+|||+++|++||+|.+.| .+.+.+||++|| |+++||+
T Consensus 2 ~~l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~p-~~~l~~ia~~l~~~v~~~~l~ 59 (79)
T 3bd1_A 2 NAIDIAINKLG-SVSALAASLGVRQSAISNWRARGRVP-AERCIDIERVTNGAVICRELR 59 (79)
T ss_dssp CHHHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCC-GGGHHHHHHHTTTSSCHHHHC
T ss_pred hHHHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCCC-HHHHHHHHHHHCCCCcHHHhC
Confidence 37999999999 99999999999999999999999988 999999999999 9999994
No 53
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.52 E-value=1.4e-14 Score=115.09 Aligned_cols=66 Identities=21% Similarity=0.193 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCCC
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTNK 96 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~~ 96 (174)
.+.+|.+||.+|+.+||||++||+.+ +|+++||+||+|.+.|+.+.+.+||++|||+++||+....
T Consensus 3 ~~~~g~~i~~~R~~~~~tq~~la~~~-~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~~ 68 (293)
T 3u3w_A 3 AEKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLI 68 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHHTTT
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHh-CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhCCCC
Confidence 35799999999999999999999999 9999999999999999999999999999999999996443
No 54
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=99.48 E-value=1.6e-14 Score=117.76 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCC
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTN 95 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~ 95 (174)
|.+|++||.+|+++||||++||+.+ +|+++||+||+|.+.|+.+.+.+||++|||++++|+...
T Consensus 2 m~ig~~lk~~R~~~gltq~~la~~~-is~~~is~~E~g~~~~~~~~l~~i~~~l~v~~~~~~~~~ 65 (317)
T 2awi_A 2 FKIGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEILNRA 65 (317)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHh-cCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHHHHhhc
Confidence 5699999999999999999999999 999999999999999999999999999999999998543
No 55
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=99.44 E-value=5.4e-14 Score=109.51 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
+++.++++|+.+|+.+|+||++||+++|+|+++|++||+|.+.|+.+.+.+||++|||+++||+.
T Consensus 14 ~~~~~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g~~~p~~~~l~~ia~~l~v~~~~l~~ 78 (236)
T 3bdn_A 14 DARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP 78 (236)
T ss_dssp HHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTTTSCGGGTCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHhhc
Confidence 35689999999999999999999999999999999999999999999999999999999999984
No 56
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.42 E-value=1.3e-14 Score=107.03 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCC
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGT 94 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~ 94 (174)
++|.+|+.+|+.+||||++||+++|+|+++|++||+|...|+.+.+.+||+.|||+.+||++.
T Consensus 1 mig~~lk~~R~~~gltq~elA~~lgis~~~vs~~e~G~~~~~~~~~~~la~~~~v~~~~l~~~ 63 (158)
T 2p5t_A 1 MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGE 63 (158)
T ss_dssp ---------------------------------------------------------------
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCC
Confidence 479999999999999999999999999999999999999999999999999999999999953
No 57
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=99.41 E-value=3.1e-13 Score=96.75 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccc
Q psy6501 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVN 91 (174)
Q Consensus 33 ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l 91 (174)
.|++|+.+|+..||||++||+.+|+|+++|++||+|.+.|+... .+|++.|+++++++
T Consensus 72 ~~~~l~~~R~~~glsq~~la~~~g~s~~~i~~~E~g~~~p~~~~-~~l~~~~~~~p~~~ 129 (133)
T 3o9x_A 72 APEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPST-IKLLRVLDKHPELL 129 (133)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHHTSSCCCHHH-HHHHHHHHHCGGGH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH-HHHHHHHccCHHHH
Confidence 36899999999999999999999999999999999999999776 77889999988875
No 58
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.40 E-value=4.7e-14 Score=111.94 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
++.+|.+||.+|+.+||||++||+.+ +|+++||+||+|.+.|+.+.+.+||++|||++++|+.
T Consensus 3 ~~~~g~~i~~~r~~~~~tq~~la~~~-~s~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~ 65 (293)
T 2qfc_A 3 AEKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYE 65 (293)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTTTTTT-SCHHHHHHHHTSSSCCCHHHHHHHTTTSCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH-cCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhc
Confidence 46799999999999999999999999 9999999999999999999999999999999999873
No 59
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=99.38 E-value=6.6e-13 Score=107.17 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHH------cCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCccccc
Q psy6501 30 PLDLAKLLMQGRQA------KGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERALGIRLRV 90 (174)
Q Consensus 30 ~~~ig~~ik~~R~~------~gltq~eLA~~igvs~~~is~~E~G~~-~P~~~~l~~la~~L~v~~~~ 90 (174)
...||.+||.+|++ +||||+|||+.+|||+++|++||+|+. .|+.+.+.+||++|+|+.++
T Consensus 4 ~~~lG~~Lr~lR~~~~~~~~~gLtqeelA~~~gvS~~~is~iE~G~~~~ps~~~l~~lA~aL~v~~~e 71 (292)
T 3pxp_A 4 RAAFGKLVQALRREHRDEKGRVWTQEVLAERTQLPKRTIERIENGSLAHLDADILLRLADALELTIGE 71 (292)
T ss_dssp HHHHHHHHHHHHHTCBCTTSCBCCHHHHHHHHTCCHHHHHHHHHTCCSCCCHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHccCccCcCCCCHHHHHHHHCcCHHHHHHHHCCCCCCCCHHHHHHHHHhcCCCHHH
Confidence 35799999999999 999999999999999999999999996 99999999999999999875
No 60
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=99.38 E-value=9.3e-13 Score=85.50 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
..+|+.+|.++|+||.+||+++|||+++|++|++| ..|+ ....||++|||+++||+.
T Consensus 11 ~~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~~-~~p~--~~~~IA~aLgv~~~~L~~ 67 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPTTLANALER-HWPK--GEQIIANALETKPEVIWP 67 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTS-SCHH--HHHHHHHHTTSCHHHHCT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC-CCcc--HHHHHHHHHCcCHHHHhH
Confidence 67889899999999999999999999999999997 3344 445699999999999995
No 61
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=99.33 E-value=1.6e-12 Score=97.89 Aligned_cols=62 Identities=10% Similarity=0.058 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccC
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAG 93 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~ 93 (174)
-.+.+++||+++|+.+ ||++||+++|+|+++|++||+|...| .+.+.+||++|||+++||+.
T Consensus 6 ~~~~~~~rl~~~r~~~--tq~elA~~~Gis~~~i~~~e~g~~~p-~~~l~~ia~~~~v~~~~l~~ 67 (189)
T 2fjr_A 6 SNVDVLDRICEAYGFS--QKIQLANHFDIASSSLSNRYTRGAIS-YDFAAHCALETGANLQWLLT 67 (189)
T ss_dssp CHHHHHHHHHHHHTCS--SHHHHHHHTTCCHHHHHHHHHSSSCC-HHHHHHHHHHHCCCHHHHHH
T ss_pred ccHHHHHHHHHHHhhc--CHHHHHHHhCcCHHHHHHHHhCCCCC-HHHHHHHHHHHCCCHHHHhc
Confidence 3578999999999887 99999999999999999999999999 99999999999999999984
No 62
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=99.28 E-value=2.9e-12 Score=83.21 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcc
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIR 87 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~ 87 (174)
....-+||.+|. ||+|.+||+.+|||++|||.+|||+..|++. .+||++||.=
T Consensus 20 ~~~~~kLK~il~--GikQ~eLAK~iGIsqsTLSaIenG~~~PsL~--~kIAk~fg~w 72 (83)
T 2l1p_A 20 TTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS--AAKCQEFGRW 72 (83)
T ss_dssp HHHHHHHHHHHT--TSCHHHHHHHSSSCHHHHHHHHTCSSCCCCC--SHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hcCHHHHHHHcCCCHHHHHHHHcCCCCCCch--HHHHHHHHHH
Confidence 467889999999 9999999999999999999999999999999 8999999863
No 63
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=99.17 E-value=9.8e-11 Score=77.60 Aligned_cols=54 Identities=24% Similarity=0.240 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..++..|+..|+.+||||.++|+.+|+++++|++||+|...|+.+.+.+|+++|
T Consensus 13 ~~~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l 66 (86)
T 3eus_A 13 VYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAAC 66 (86)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHc
Confidence 347899999999999999999999999999999999999999999999999986
No 64
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=99.16 E-value=8e-11 Score=81.33 Aligned_cols=72 Identities=36% Similarity=0.563 Sum_probs=62.9
Q ss_pred ccchhhhhhhhhhcccccHHHHHHHHHHHH--hcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 103 NTAKLDRETEELKHEKVPLDLAKLLMQGRQ--AKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~--~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
+...++...+......+...++..|+..|. ..|+||.+||+.+|+++++|++||+|...|+.+.+.+|+++|
T Consensus 15 ~~~~~d~~~~~~~~~~~~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l 88 (107)
T 2jvl_A 15 RLTKVDRSDDIIKPKTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVL 88 (107)
T ss_dssp CCCCCCCCCCCCCCCCCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTT
T ss_pred ccccccccccccCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 344555555555666777889999999999 999999999999999999999999999999999999999986
No 65
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=99.15 E-value=1.5e-10 Score=75.63 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
...++..|+..|..+|+||.++|+.+|+++++|++||+|...|+...+.+||++|
T Consensus 9 ~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l 63 (82)
T 3s8q_A 9 LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGL 63 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999986
No 66
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=99.13 E-value=1.1e-10 Score=75.94 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcC-CCCCCHHHHHHHHhhC
Q psy6501 119 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGG-RGIPNQAIIGKMERAL 174 (174)
Q Consensus 119 ~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G-~~~P~~~~l~~i~~~l 174 (174)
.+...+..|+.+|+.+||||.++|+.+|+++++|++||+| ...|+.+.+.+||++|
T Consensus 7 ~~~~~~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l 63 (78)
T 3qq6_A 7 HHHMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVL 63 (78)
T ss_dssp -CTTHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999 8999999999999875
No 67
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=99.12 E-value=1.6e-10 Score=73.27 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhC--CChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKIN--EKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg--~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..++..|+..|..+|+||+++|+.+| +++++|++||+|...|+...+.+||++|
T Consensus 7 ~~~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l 62 (71)
T 2ewt_A 7 KQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFY 62 (71)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999 9999999999999999999999999875
No 68
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=99.12 E-value=2.5e-10 Score=72.71 Aligned_cols=54 Identities=30% Similarity=0.244 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..++..|+..|...|+||.++|+.+|+++++|++||+|...|+.+.+.+|+++|
T Consensus 12 ~~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l 65 (74)
T 1y7y_A 12 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATAL 65 (74)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999999999999986
No 69
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=99.12 E-value=1.7e-10 Score=79.13 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=49.1
Q ss_pred ccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 119 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 119 ~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
+...++.+|+.+|+.+||||+++|+++|+++++|++||+|+ |+++.+.+|+++|
T Consensus 33 l~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E~G~--~~~~~l~~i~~aL 86 (101)
T 4ghj_A 33 LAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGK--VQLDIMIAILMAL 86 (101)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTC--CBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHCCC--CCHHHHHHHHHHc
Confidence 45678999999999999999999999999999999999997 5667899999886
No 70
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=99.11 E-value=2.4e-10 Score=71.53 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 122 ~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
.++..|+..|..+|+||.++|+.+|+++++|++||+|...|+.+.+.+|+++|
T Consensus 5 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l 57 (68)
T 2r1j_L 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKAL 57 (68)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999876
No 71
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=99.11 E-value=2e-10 Score=78.32 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 119 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 119 ~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
+...++.+|+.+|+.+|+||+++|+++|+++++|++||+|...|+...+.+||++|
T Consensus 25 ~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l 80 (99)
T 3g5g_A 25 LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGL 80 (99)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999987
No 72
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=99.10 E-value=3.2e-10 Score=72.85 Aligned_cols=55 Identities=25% Similarity=0.224 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
...++..|+..|..+|+||.++|+.+|+++++|++||+|...|+...+.+||++|
T Consensus 8 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l 62 (77)
T 2b5a_A 8 KRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAAL 62 (77)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 3567899999999999999999999999999999999999999999999999986
No 73
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=99.10 E-value=1.9e-10 Score=75.16 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..++..|+..|..+|+||.++|+.+|+++++|++||+|+..|+.+.+.+||++|
T Consensus 13 ~~~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l 66 (83)
T 3f6w_A 13 QALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGI 66 (83)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHc
Confidence 457899999999999999999999999999999999999999999999999875
No 74
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=2.2e-10 Score=74.00 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 123 ~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
++..|+..|..+|+||+++|+++|+++++|++||+|+..|+...+.+|+++|
T Consensus 3 ~~~~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l 54 (77)
T 2k9q_A 3 LSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSK 54 (77)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999986
No 75
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=99.09 E-value=2.4e-10 Score=74.43 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..+..+++..|+.+|+||.++|+.+|+++++|++||+|...|+.+.+.+||++|
T Consensus 11 ~~l~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l 64 (80)
T 3kz3_A 11 RRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKIL 64 (80)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999999999999999875
No 76
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=99.08 E-value=3.7e-10 Score=72.29 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 122 ~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
.++..|+..|..+|+||.++|+.+|+++++|++||+|...|+.+.+.+|+++|
T Consensus 5 ~~~~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l 57 (76)
T 1adr_A 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKAL 57 (76)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999876
No 77
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=99.06 E-value=3.4e-10 Score=72.78 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhh
Q psy6501 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERA 173 (174)
Q Consensus 124 ~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~ 173 (174)
+..|+..|+..|+||+++|+.+|+++++|++||+|...|+...+ +++++
T Consensus 13 g~~lr~~R~~~gltq~elA~~~gvs~~tis~~E~G~~~p~~~~~-~l~~~ 61 (73)
T 3fmy_A 13 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPSTI-KLLRV 61 (73)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHHH-HHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHH-HHHHH
Confidence 57899999999999999999999999999999999999999988 66654
No 78
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=99.05 E-value=5.4e-10 Score=71.92 Aligned_cols=54 Identities=22% Similarity=0.167 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCC-CCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~-~P~~~~l~~i~~~l 174 (174)
..++..|+..|..+|+||.++|+.+|+++++|++||+|.. .|+.+.+.+||++|
T Consensus 6 ~~~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l 60 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTL 60 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHc
Confidence 4578899999999999999999999999999999999999 99999999999875
No 79
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=99.04 E-value=4.7e-10 Score=83.47 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=47.3
Q ss_pred cccccchHHH--------HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHH
Q psy6501 24 LKHEKVPLDL--------AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKME 81 (174)
Q Consensus 24 ~~~~~~~~~i--------g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la 81 (174)
+.|+.+.... .++||.+|+.+||||+++|+++|||+++|++||+|.+.|+...+.+..
T Consensus 74 iaPd~LY~~~~~~~~~~s~~~lk~lR~~~glTQ~elA~~LGvsr~tis~yE~G~r~iP~~~~lac~ 139 (170)
T 2auw_A 74 FGRDNVYAWAKEQAGEVSHEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTIWLACL 139 (170)
T ss_dssp BCHHHHHHHHHHHTTCCCHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred CCHHHHHHhhhhhccCCCcHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHH
Confidence 5666663322 458999999999999999999999999999999999977777754433
No 80
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=99.04 E-value=4.8e-10 Score=74.73 Aligned_cols=57 Identities=61% Similarity=1.050 Sum_probs=52.9
Q ss_pred cccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 118 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 118 ~~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
.....++..|+..|..+|+||.++|+.+|+++++|++||+|...|+.+.+.+|+++|
T Consensus 9 ~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l 65 (91)
T 1x57_A 9 RVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAI 65 (91)
T ss_dssp CCCCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 345568899999999999999999999999999999999999999999999999875
No 81
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=99.04 E-value=4.9e-10 Score=77.96 Aligned_cols=56 Identities=32% Similarity=0.262 Sum_probs=52.7
Q ss_pred ccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 119 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 119 ~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
....++..|+.+|+.+||||+++|+.+|+++++|++||+|+..|+...+.+||++|
T Consensus 18 ~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l 73 (114)
T 3vk0_A 18 LRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAAL 73 (114)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999999999999999999999999999999999875
No 82
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=99.04 E-value=3.7e-10 Score=78.36 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..++.+|+..|+.+|+||.++|+.+|+++++|++||+|...|+.+.+.+||++|
T Consensus 8 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l 61 (114)
T 3op9_A 8 HQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYF 61 (114)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 347889999999999999999999999999999999999999999999999875
No 83
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=99.03 E-value=3.9e-10 Score=72.06 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 124 ~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
...|+..|..+|+||.++|+.+|+++++|++||+|...|+.+.+.+||++|
T Consensus 10 ~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l 60 (73)
T 3omt_A 10 FNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEAL 60 (73)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999875
No 84
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=99.03 E-value=5.3e-10 Score=73.69 Aligned_cols=55 Identities=29% Similarity=0.459 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
...++..|+..|..+|+||.++|+.+|+++++|++||+|...|+...+.+|+++|
T Consensus 10 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l 64 (88)
T 2wiu_B 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSL 64 (88)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 3567899999999999999999999999999999999999999999999999986
No 85
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=99.03 E-value=5.4e-10 Score=75.01 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..++.+|+..|..+|+||.++|+.+|+++++|++||+|...|+.+.+.+|+++|
T Consensus 8 ~~~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l 61 (94)
T 2kpj_A 8 AIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYF 61 (94)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999875
No 86
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=99.02 E-value=6.7e-10 Score=73.96 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
...++..++..|..+|+||.++|+.+|+++++|++||+|...|+.+.+.+||++|
T Consensus 15 ~~~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l 69 (92)
T 1lmb_3 15 ARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKIL 69 (92)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999875
No 87
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=99.01 E-value=6.3e-10 Score=78.57 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
...++.+|+..|..+||||.++|+.+|+++++|++||+|...|+.+.+.+||++|
T Consensus 10 ~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l 64 (126)
T 3ivp_A 10 FRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLL 64 (126)
T ss_dssp THHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999875
No 88
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=99.01 E-value=6.7e-10 Score=74.21 Aligned_cols=50 Identities=6% Similarity=0.011 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 124 ~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
...|+..|.++||||.+||+++|+++++|++||+|+. |+.+.+.+||++|
T Consensus 26 ~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~-~s~~~l~kIa~~L 75 (88)
T 3t76_A 26 YNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNEN-VSLTVLLAICEYL 75 (88)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC-cCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999986 8999999999986
No 89
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=99.01 E-value=4.1e-10 Score=76.18 Aligned_cols=52 Identities=25% Similarity=0.410 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCChhH----HHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 123 LAKLLMQGRQAKGWSQKDLATKINEKPQI----VNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 123 ~~~~i~~~R~~~glsq~ela~~lg~~~s~----i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
++.+|+..|..+|+||.++|+.+|+++++ |++||+|...|+.+.+.+||++|
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l 57 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVL 57 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999999999 99999999999999999999875
No 90
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=99.00 E-value=1.1e-09 Score=68.11 Aligned_cols=50 Identities=26% Similarity=0.211 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 125 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 125 ~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..|+..|..+|+||.++|+.+|+++++|++||+|...|+.+.+.+|+++|
T Consensus 4 ~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l 53 (66)
T 2xi8_A 4 NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYL 53 (66)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999886
No 91
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=98.99 E-value=9.2e-10 Score=69.07 Aligned_cols=51 Identities=22% Similarity=0.336 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 123 ~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
++..|+..|...|+||.++|+.+|+++++|++||+|...|+.. +.+|+++|
T Consensus 2 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~-l~~la~~l 52 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRF-LPELASAL 52 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTT-HHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchH-HHHHHHHH
Confidence 5678999999999999999999999999999999999998877 99999876
No 92
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=98.99 E-value=9.2e-10 Score=76.68 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=53.2
Q ss_pred cccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 118 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 118 ~~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
.....++..|+..|+.+|+||.++|+.+|+++++|++||+|...|+.+.+.+||++|
T Consensus 24 ~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l 80 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 80 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 344678999999999999999999999999999999999999999999999999875
No 93
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=98.97 E-value=1.6e-09 Score=71.10 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCC-CCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~-~P~~~~l~~i~~~l 174 (174)
...++..|+..|...|+||.++|+.+|+++++|++||+|+. .|+.+.+.+|+++|
T Consensus 16 ~~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l 71 (83)
T 2a6c_A 16 RSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSI 71 (83)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHc
Confidence 35578899999999999999999999999999999999998 59999999999986
No 94
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=98.96 E-value=1e-09 Score=75.54 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=50.7
Q ss_pred cHHHHHHHHH-HHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQ-GRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~-~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
+...+..|++ .|+..|+||.+||+.+|+++++|+.||+|+..|+.+.+.+|+++|
T Consensus 11 ~~~pG~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~l 66 (104)
T 3trb_A 11 PIHPGEILAEELGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFF 66 (104)
T ss_dssp CCCHHHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3456789986 799999999999999999999999999999999999999999976
No 95
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=98.96 E-value=1.9e-09 Score=70.34 Aligned_cols=53 Identities=17% Similarity=0.076 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhh
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERA 173 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~ 173 (174)
..++..|+..|...|+||.++|+.+|+++++|++||+|...|+...+.+++++
T Consensus 9 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~ 61 (84)
T 2ef8_A 9 RCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEV 61 (84)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999997766655543
No 96
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=98.94 E-value=1.7e-09 Score=68.25 Aligned_cols=52 Identities=29% Similarity=0.238 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 122 ~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
.++..|+..|..+|+||.++|+.+|+++++|++||+|...|+.. +.+|+++|
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~-l~~i~~~l 54 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRF-LFEIAMAL 54 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCST-HHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCChHH-HHHHHHHH
Confidence 35789999999999999999999999999999999999887654 89999876
No 97
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=98.94 E-value=3.7e-10 Score=78.51 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
...++..|+.+|..+||||.++|+.+|+++++|++||+|...|+.+.+.+||++|
T Consensus 21 ~~~~g~~Lk~~R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l 75 (111)
T 3mlf_A 21 QSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAF 75 (111)
T ss_dssp CCSSCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 3445678999999999999999999999999999999999999999999999875
No 98
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=98.92 E-value=1e-09 Score=74.42 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 122 ~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
.++..|+..|+..|+||.+||+.+|+++++|++||+|...|+.. +.+|+++|
T Consensus 30 ~~~~~lk~~R~~~glsq~elA~~lgvs~~~is~~E~G~~~p~~~-~~~l~~~l 81 (99)
T 2ppx_A 30 PRMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQP-ARAYLKII 81 (99)
T ss_dssp --CCHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHH-HHHHHHHH
Confidence 45678999999999999999999999999999999999999988 77888764
No 99
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=98.92 E-value=2.2e-09 Score=74.79 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCC------CHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIP------NQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P------~~~~l~~i~~~l 174 (174)
..++..|+.+|+.+||||+++|+.+|+++++|+.||+|...| ...++.+||++|
T Consensus 6 ~~lG~~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA~~L 65 (112)
T 2wus_R 6 KELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFL 65 (112)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999998754 346788999886
No 100
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=98.92 E-value=1.6e-09 Score=77.41 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCH------HHHHHHHhhC
Q psy6501 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQ------AIIGKMERAL 174 (174)
Q Consensus 122 ~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~------~~l~~i~~~l 174 (174)
.++..|+++|+++|+||+++|+++|++++++++||+|+..|.+ .++.++|++|
T Consensus 3 ~~G~~lr~~R~~~gltq~elA~~~gis~~~is~iE~g~~~~~~~~~~~~~~l~~ia~~L 61 (130)
T 3fym_A 3 TVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVV 61 (130)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCchhhhHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999988776 7799999986
No 101
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=98.92 E-value=2.2e-09 Score=68.67 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 124 ~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
+..|+..|..+|+||.++|+.+|+++++|++||+|...|+.+.+.+|+++|
T Consensus 12 ~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l 62 (76)
T 3bs3_A 12 LNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELL 62 (76)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999875
No 102
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=98.92 E-value=2.9e-09 Score=71.26 Aligned_cols=53 Identities=9% Similarity=0.159 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 122 ~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
.++..|+..|...|+||.++|+.+|+++++|++||+|...|+.+.+.+|+++|
T Consensus 8 ~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l 60 (94)
T 2ict_A 8 RPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVI 60 (94)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999986
No 103
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=98.91 E-value=1.9e-09 Score=72.64 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhh
Q psy6501 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERA 173 (174)
Q Consensus 123 ~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~ 173 (174)
++.+|+..|..+|+||.++|+.+|+++++|++||+|...|+...+.+|+++
T Consensus 5 ~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~ 55 (99)
T 2l49_A 5 ISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQT 55 (99)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999987
No 104
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=98.91 E-value=4.2e-09 Score=74.21 Aligned_cols=55 Identities=18% Similarity=0.013 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCC-CCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~-~P~~~~l~~i~~~l 174 (174)
...++..|+..|+.+||||.++|+.+|+++++|++||+|+. .|+.+.+.+|+++|
T Consensus 38 ~~~lg~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~L 93 (120)
T 2o38_A 38 KLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNAL 93 (120)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999998 99999999999986
No 105
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=98.90 E-value=2.8e-09 Score=72.72 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
...++..|+..|...|+||.++|+.+|+++++|++||+|+..|+.+.+.+|+++|
T Consensus 16 ~~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l 70 (104)
T 3cec_A 16 PIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKAL 70 (104)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999875
No 106
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=98.89 E-value=4.9e-12 Score=89.55 Aligned_cols=51 Identities=24% Similarity=0.383 Sum_probs=47.3
Q ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHcC------CCCCCHHHHHHHHHHhCcccccc
Q psy6501 40 GRQAKGWSQKDLATKINEKPQIVNDYEGG------RGIPNQAIIGKMERALGIRLRVN 91 (174)
Q Consensus 40 ~R~~~gltq~eLA~~igvs~~~is~~E~G------~~~P~~~~l~~la~~L~v~~~~l 91 (174)
+|+ +||||+|||+++|+|+++||+||+| +..|++..+.+||..|+|++++.
T Consensus 1 lR~-~glTQ~eLA~~~Gvs~~~is~~E~G~~~~~~~~~p~~~~l~~la~~l~v~~~~~ 57 (122)
T 1nr3_A 1 MRE-RGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLKSPVRILCRRG 57 (122)
T ss_dssp CCC-CSCSSCSTHHHHHHCCSSSCCHHHHHHTTCSSSSCHHHHHHHHCCCEEEEECCG
T ss_pred Ccc-cCCCHHHHHHHhCCCHHHHHHHHcCCCccchhcccCHHHHHHHHHHHccccccC
Confidence 366 9999999999999999999999999 88999999999999999998753
No 107
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=98.88 E-value=3e-09 Score=73.04 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcC-CCCCCHHHHHHHHhhC
Q psy6501 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGG-RGIPNQAIIGKMERAL 174 (174)
Q Consensus 123 ~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G-~~~P~~~~l~~i~~~l 174 (174)
++..|+..|..+|+||.++|+.+|+++++|++||+| ...|+...+.+||++|
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l 54 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVL 54 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 367899999999999999999999999999999999 9999999999999875
No 108
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=98.88 E-value=6.1e-09 Score=76.11 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
...+.++|..+|+++|||++++|+.+|+|+.++..++.|...|+.+.+.+|+++|+++.+...
T Consensus 11 ~~~~~~~I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e~~~ 73 (156)
T 1dw9_A 11 RLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSIL 73 (156)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999987653
No 109
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=98.82 E-value=7.8e-09 Score=77.80 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..++.+|+..|+.+|+||+++|+++|+++++|++||+|+..|+.+.+.+||++|
T Consensus 10 ~~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l 63 (192)
T 1y9q_A 10 SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGL 63 (192)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999875
No 110
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=98.81 E-value=5.1e-09 Score=72.39 Aligned_cols=53 Identities=8% Similarity=0.069 Sum_probs=49.8
Q ss_pred HHHHHHHH-HHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 122 DLAKLLMQ-GRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 122 ~~~~~i~~-~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
.++..|+. .|...|+||.++|+.+|+++++|++||+|...|+...+.+||++|
T Consensus 10 ~~g~~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l 63 (113)
T 2eby_A 10 TPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVF 63 (113)
T ss_dssp CHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 46789997 899999999999999999999999999999999999999999875
No 111
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=98.81 E-value=1.1e-08 Score=77.15 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCC-CCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~-~P~~~~l~~i~~~l 174 (174)
...++.+|+..|+.+||||+++|+++|+++++|++||+|+. .|+...+.+||++|
T Consensus 8 ~~~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l 63 (198)
T 2bnm_A 8 STGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVL 63 (198)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999999 99999999999986
No 112
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=98.80 E-value=4.1e-09 Score=68.38 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 126 LLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 126 ~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
.|+..|+..| ||.+||+++|+++++|++||+|...| .+.+.+|+++|
T Consensus 3 ~l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~p-~~~l~~ia~~l 49 (79)
T 3bd1_A 3 AIDIAINKLG-SVSALAASLGVRQSAISNWRARGRVP-AERCIDIERVT 49 (79)
T ss_dssp HHHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCC-GGGHHHHHHHT
T ss_pred HHHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCCC-HHHHHHHHHHH
Confidence 6788899999 99999999999999999999999988 99999999886
No 113
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=98.78 E-value=3.5e-09 Score=76.61 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 123 ~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
++..|+..|..+|+||.++|+.+|+++++|++||+|...|+...+.+|+++|
T Consensus 69 ~g~~L~~~R~~~glTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~l 120 (141)
T 3kxa_A 69 GGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANAL 120 (141)
T ss_dssp SSCCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999875
No 114
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=98.78 E-value=1.9e-08 Score=65.98 Aligned_cols=52 Identities=25% Similarity=0.245 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCC-CCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~-~P~~~~l~~i~~~l 174 (174)
..++..|+..|+.+ +|.++|+.+|+++++|++||+|.. .|+...+.+||++|
T Consensus 15 ~~~g~~l~~~R~~~--sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l 67 (86)
T 2ofy_A 15 QRLGELLRSARGDM--SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVL 67 (86)
T ss_dssp HHHHHHHHHHHTTS--CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC--CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 45788999999888 999999999999999999999999 99999999999986
No 115
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=98.75 E-value=5.9e-09 Score=79.04 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH----------------HcCCCCCCHHHHHHHHHHh---Cccccc
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDY----------------EGGRGIPNQAIIGKMERAL---GIRLRV 90 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~----------------E~G~~~P~~~~l~~la~~L---~v~~~~ 90 (174)
..++|.++..+ ...|+||+|+|+.+|||+++||++ |+|...|++..|.+++..| ++++++
T Consensus 10 l~eiG~ria~~-y~~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lfp~~~~ls~p~~~~L~k~~~~l~~~~~~l~e 88 (192)
T 1zx4_A 10 IREIGLRLMRM-KNDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEMGNKNLEFDQ 88 (192)
T ss_dssp HHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGGGCCHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHcCCcccCccchHHHHHHHHHHhhhcCCCHHH
Confidence 46799999999 889999999999999999999998 7999999999999999999 999999
Q ss_pred cc
Q psy6501 91 NA 92 (174)
Q Consensus 91 l~ 92 (174)
|+
T Consensus 89 Li 90 (192)
T 1zx4_A 89 LI 90 (192)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 116
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=98.72 E-value=1.8e-08 Score=71.63 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHH
Q psy6501 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIG 168 (174)
Q Consensus 124 ~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~ 168 (174)
+..|+.+|+..||||.++|+.+|+++++|++||+|...|+.....
T Consensus 73 ~~~l~~~R~~~glsq~~la~~~g~s~~~i~~~E~g~~~p~~~~~~ 117 (133)
T 3o9x_A 73 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIK 117 (133)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHHTSSCCCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH
Confidence 467999999999999999999999999999999999999987743
No 117
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=98.62 E-value=7e-08 Score=77.75 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHh------cCCCHHHHHHHhCCChhHHHHHhcCCC-CCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQA------KGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~------~glsq~ela~~lg~~~s~i~~~E~G~~-~P~~~~l~~i~~~l 174 (174)
..++..|+..|++ +|+||+++|+.+|++.++|++||+|+. .|+.+++.+|+++|
T Consensus 5 ~~lG~~Lr~lR~~~~~~~~~gLtqeelA~~~gvS~~~is~iE~G~~~~ps~~~l~~lA~aL 65 (292)
T 3pxp_A 5 AAFGKLVQALRREHRDEKGRVWTQEVLAERTQLPKRTIERIENGSLAHLDADILLRLADAL 65 (292)
T ss_dssp HHHHHHHHHHHHTCBCTTSCBCCHHHHHHHHTCCHHHHHHHHHTCCSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCccCcCCCCHHHHHHHHCcCHHHHHHHHCCCCCCCCHHHHHHHHHhc
Confidence 4578999999999 999999999999999999999999997 99999999999987
No 118
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=98.62 E-value=2.6e-08 Score=64.60 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..+.-.++..+. |++|.+||+++|+++++++.+|+|+..|+.. .+||++|
T Consensus 20 ~~~~~kLK~il~--GikQ~eLAK~iGIsqsTLSaIenG~~~PsL~--~kIAk~f 69 (83)
T 2l1p_A 20 TTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS--AAKCQEF 69 (83)
T ss_dssp HHHHHHHHHHHT--TSCHHHHHHHSSSCHHHHHHHHTCSSCCCCC--SHHHHHH
T ss_pred HHHHHHHHHHHH--hcCHHHHHHHcCCCHHHHHHHHcCCCCCCch--HHHHHHH
Confidence 445667777776 9999999999999999999999999999988 7888875
No 119
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=98.60 E-value=6.2e-08 Score=60.05 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=38.1
Q ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccc
Q psy6501 38 MQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLR 89 (174)
Q Consensus 38 k~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~ 89 (174)
+++.+.. +||.+||+.+|||+++||+|| ...|. .....|+++++..+.
T Consensus 4 ~~~i~~~-~tq~~lA~~lGvs~~~Vs~we--~~~p~-~~~~~i~~~~~g~v~ 51 (61)
T 1rzs_A 4 KDVIDHF-GTQRAVAKALGISDAAVSQWK--EVIPE-KDAYRLEIVTAGALK 51 (61)
T ss_dssp HHHHHHH-SSHHHHHHHHTCCHHHHHHCC--SBCCH-HHHHHHHHHTTSCSC
T ss_pred HHHHHHc-CCHHHHHHHhCCCHHHHHHHH--hhCCH-HHHHHHHHHHCCCce
Confidence 4444444 599999999999999999999 34454 566699999998776
No 120
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A
Probab=98.59 E-value=7.2e-08 Score=77.84 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCcccccccCCC
Q psy6501 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERALGIRLRVNAGTN 95 (174)
Q Consensus 33 ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~-~P~~~~l~~la~~L~v~~~~l~~~~ 95 (174)
.|-.|+.+|...|+||++||++.||++..||.+|||++ .+..+.+.+||++|+|+...|+...
T Consensus 231 agv~LR~ar~ReglTQ~~LAe~TGIPq~hISeMenGKr~~IGkdeaR~LA~ALnvDYRvLLP~~ 294 (443)
T 3g7d_A 231 AGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYRVLLPAD 294 (443)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHHTCCGGGGSCCC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHhcCCcCCccHHHHHHHHHHhCCCchhccCcc
Confidence 47899999999999999999999999999999999999 5699999999999999999999544
No 121
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=98.59 E-value=6.7e-08 Score=69.38 Aligned_cols=53 Identities=9% Similarity=0.145 Sum_probs=48.9
Q ss_pred HHHHHHHHHHH------hcCCCHHHHHHHhC-----CChhHHHHHhcCCC-CCCHHHHHHHHhhC
Q psy6501 122 DLAKLLMQGRQ------AKGWSQKDLATKIN-----EKPQIVNDYEGGRG-IPNQAIIGKMERAL 174 (174)
Q Consensus 122 ~~~~~i~~~R~------~~glsq~ela~~lg-----~~~s~i~~~E~G~~-~P~~~~l~~i~~~l 174 (174)
.++++|+..|+ ..++||+++|+.+| +++++|+.||+|++ .|+.+++.+||++|
T Consensus 7 ~~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f 71 (135)
T 3r1f_A 7 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFF 71 (135)
T ss_dssp CHHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHcccCCCcCHHHHHHHHCCCCCCCCHHHHHHHHHHh
Confidence 46789999999 47899999999999 99999999999997 89999999999986
No 122
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=98.58 E-value=1.1e-07 Score=67.22 Aligned_cols=53 Identities=9% Similarity=0.145 Sum_probs=47.8
Q ss_pred HHHHHHHHHHH------hcCCCHHHHHHHhC-----CChhHHHHHhcCCC-CCCHHHHHHHHhhC
Q psy6501 122 DLAKLLMQGRQ------AKGWSQKDLATKIN-----EKPQIVNDYEGGRG-IPNQAIIGKMERAL 174 (174)
Q Consensus 122 ~~~~~i~~~R~------~~glsq~ela~~lg-----~~~s~i~~~E~G~~-~P~~~~l~~i~~~l 174 (174)
.+.++|...++ ..+|||+++|+.+| +++++|+.||+|++ .|+.+.+.+||++|
T Consensus 5 ~~a~RL~~L~~~~~~~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f 69 (123)
T 3qwg_A 5 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFF 69 (123)
T ss_dssp CHHHHHHHHHHHSSCTTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHcccCCCcCHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 35678888888 56799999999998 99999999999997 89999999999987
No 123
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.47 E-value=1.9e-08 Score=73.83 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 123 ~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
++.+|+..|...|+||.++|+++|+++++|++||+|...|+...+.+|+++|
T Consensus 2 ig~~lk~~R~~~gltq~elA~~lgis~~~vs~~e~G~~~~~~~~~~~la~~~ 53 (158)
T 2p5t_A 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKF 53 (158)
T ss_dssp ----------------------------------------------------
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999876
No 124
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=98.46 E-value=1.9e-08 Score=80.75 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..++.+|+..|+.+|+||.++|+.+|+++++|++||+|+..|+.+.+.+||++|
T Consensus 29 ~~~~~~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~g~~~p~~~~l~~ia~~l 82 (311)
T 4ich_A 29 DELRRRVRGLIHSRPGAQREFAAAIGLDESKLSKSLNGTRRFSPHELVRIAEHS 82 (311)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999876
No 125
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.44 E-value=1.6e-07 Score=72.63 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 122 ~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
.+..+|+..|+.+|+||.++|+++|++++++++||+|...|+.+.+.+|+++|
T Consensus 17 ~~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g~~~p~~~~l~~ia~~l 69 (236)
T 3bdn_A 17 RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKIL 69 (236)
T ss_dssp HHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999876
No 126
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.44 E-value=7e-07 Score=68.79 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHH
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKM 80 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~l 80 (174)
...++..|+..|..+||||.+||+.+|||+++||+||++....+...+..+
T Consensus 29 ~~~~~~~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~~g~~~t~~k~a~~ 79 (221)
T 2h8r_A 29 PWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAAL 79 (221)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTTCCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCchhHHHHHHH
Confidence 367889999999999999999999999999999999997777776655443
No 127
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=98.43 E-value=4.7e-07 Score=67.27 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHH
Q psy6501 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKM 170 (174)
Q Consensus 124 ~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i 170 (174)
..+|+.+|++.|+||+++|+.+|+++++|+.||+|++.|+..++.++
T Consensus 92 ~~~lk~lR~~~glTQ~elA~~LGvsr~tis~yE~G~r~iP~~~~lac 138 (170)
T 2auw_A 92 HEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTIWLAC 138 (170)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHH
Confidence 46899999999999999999999999999999999998887775543
No 128
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=98.37 E-value=7.1e-07 Score=56.04 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=37.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCC---CCCHHHHHHHHH---HhCccccccc
Q psy6501 46 WSQKDLATKINEKPQIVNDYEGGRG---IPNQAIIGKMER---ALGIRLRVNA 92 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E~G~~---~P~~~~l~~la~---~L~v~~~~l~ 92 (174)
+|++|+|+.+|||++|||++.||.. .++.++..+|.+ .||..++...
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a 53 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVA 53 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC---
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHH
Confidence 5899999999999999999999998 888877666554 6888776553
No 129
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=98.36 E-value=9.8e-07 Score=56.78 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 124 ~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
...|+..+.++|+|+.+||+.+|+++++|+.|++| |.+.....||++|
T Consensus 11 ~~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~~---~~p~~~~~IA~aL 58 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPTTLANALER---HWPKGEQIIANAL 58 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTS---SCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC---CCccHHHHHHHHH
Confidence 45677778899999999999999999999999997 4455556699886
No 130
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=98.34 E-value=3.2e-07 Score=57.23 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQ 74 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~ 74 (174)
.+|+.+|...| ||.++|+.+|+|+++||+||+|.+.|++
T Consensus 4 ~~l~~~~~~~g-s~~~~A~~lgis~~~vs~~~~~~~~~~l 42 (67)
T 2pij_A 4 IPLSKYLEEHG-TQSALAAALGVNQSAISQMVRAGRSIEI 42 (67)
T ss_dssp EEHHHHHHHTC-CHHHHHHHHTSCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHcC-CHHHHHHHHCcCHHHHHHHHcCCCCCCe
Confidence 36889999999 9999999999999999999999887754
No 131
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=98.30 E-value=1.2e-06 Score=55.26 Aligned_cols=48 Identities=21% Similarity=0.077 Sum_probs=38.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH---HHHHHHhCccccccc
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEGGRGIPNQAII---GKMERALGIRLRVNA 92 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l---~~la~~L~v~~~~l~ 92 (174)
.+|+.|+|+.+|||++|||+++||...++.++. .++++.||..++.+.
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY~pn~~a 59 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMG 59 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHCCCC----
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCccHHH
Confidence 589999999999999999999999988888774 455788888776543
No 132
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.27 E-value=2.8e-06 Score=64.46 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIG 78 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~ 78 (174)
...|+.+|+.++..+|+||.+||+.+|+|+++||+|++|...++.....
T Consensus 28 p~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l~~~~~~~~~kra 76 (194)
T 1ic8_A 28 PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRA 76 (194)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHhcCccccccccc
Confidence 3468899999999999999999999999999999999998777766433
No 133
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=98.22 E-value=1.7e-06 Score=64.59 Aligned_cols=51 Identities=8% Similarity=0.058 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..+.++|+..|... ||.++|+++|+++++++.||+|...| .+.+.+|+++|
T Consensus 8 ~~~~~rl~~~r~~~--tq~elA~~~Gis~~~i~~~e~g~~~p-~~~l~~ia~~~ 58 (189)
T 2fjr_A 8 VDVLDRICEAYGFS--QKIQLANHFDIASSSLSNRYTRGAIS-YDFAAHCALET 58 (189)
T ss_dssp HHHHHHHHHHHTCS--SHHHHHHHTTCCHHHHHHHHHSSSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--CHHHHHHHhCcCHHHHHHHHhCCCCC-HHHHHHHHHHH
Confidence 45678888888766 99999999999999999999999999 99999999875
No 134
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=98.06 E-value=9e-06 Score=59.32 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
..+...|..+|.++|+|.+++|+++|+++..+..++.|...|+.+.+.+|+++|
T Consensus 12 ~~~~~~I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~L 65 (156)
T 1dw9_A 12 LDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKL 65 (156)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999999999986
No 135
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=98.06 E-value=6.6e-06 Score=56.94 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC--CCHHHHHHHHcCCCCCCHHHHHHHHHH
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKIN--EKPQIVNDYEGGRGIPNQAIIGKMERA 83 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~ig--vs~~~is~~E~G~~~P~~~~l~~la~~ 83 (174)
+.+.-|+.+|...||||.|.|..+| +|..+-.+||+|.+..+.+....+...
T Consensus 3 Mn~~ELkalR~ilgLt~~EaA~~i~~~vs~rtWQqWE~G~~~IP~~i~e~~~~m 56 (120)
T 1s4k_A 3 MNALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKEM 56 (120)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHhccCCHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 4467799999999999999999998 899999999999999998888777643
No 136
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=97.94 E-value=7.4e-06 Score=61.94 Aligned_cols=38 Identities=11% Similarity=0.257 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHcCC--CHHHHHHHhCCC-HHHHHHHHc
Q psy6501 30 PLDLAKLLMQGRQAKGW--SQKDLATKINEK-PQIVNDYEG 67 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gl--tq~eLA~~igvs-~~~is~~E~ 67 (174)
...++++|+.+|++.|+ ||.|||+++|++ +++|++|++
T Consensus 8 q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 8 QQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 45799999999999999 999999999999 999999987
No 137
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=97.93 E-value=1.2e-07 Score=66.72 Aligned_cols=43 Identities=23% Similarity=0.462 Sum_probs=39.5
Q ss_pred HHhcCCCHHHHHHHhCCChhHHHHHhcC------CCCCCHHHHHHHHhhC
Q psy6501 131 RQAKGWSQKDLATKINEKPQIVNDYEGG------RGIPNQAIIGKMERAL 174 (174)
Q Consensus 131 R~~~glsq~ela~~lg~~~s~i~~~E~G------~~~P~~~~l~~i~~~l 174 (174)
|+ +||||+++|+++|+++++|++||+| ...|+...+.+|+.+|
T Consensus 2 R~-~glTQ~eLA~~~Gvs~~~is~~E~G~~~~~~~~~p~~~~l~~la~~l 50 (122)
T 1nr3_A 2 RE-RGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLKSPV 50 (122)
T ss_dssp CC-CSCSSCSTHHHHHHCCSSSCCHHHHHHTTCSSSSCHHHHHHHHCCCE
T ss_pred cc-cCCCHHHHHHHhCCCHHHHHHHHcCCCccchhcccCHHHHHHHHHHH
Confidence 44 8999999999999999999999999 8899999999998754
No 138
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=97.81 E-value=2.3e-05 Score=49.92 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=31.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Q psy6501 47 SQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGI 86 (174)
Q Consensus 47 tq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v 86 (174)
+|.+||+.+|||+++|++|++|...| ......|..+-+-
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g~~iP-~~~~~~Ie~~T~G 50 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQAGEIP-PLRQSDIEVRTAY 50 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHTSCC-HHHHHHHHHHTTT
T ss_pred CHHHHHHHHCCCHHHHHHHHhCCCCC-HHHHHHHHHHhCC
Confidence 69999999999999999999986666 4556666666553
No 139
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=97.74 E-value=2.9e-05 Score=48.57 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q psy6501 36 LLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPN 73 (174)
Q Consensus 36 ~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~ 73 (174)
.|+.+|... ||.++|+.+|||+++||+|+++.+.+.
T Consensus 6 ~Lk~l~~~~--sq~~~A~~Lgvsq~aVS~~~~~~r~i~ 41 (65)
T 2cw1_A 6 DLKKFVEDK--NQEYAARALGLSQKLIEEVLKRGLPVY 41 (65)
T ss_dssp CHHHHHTTS--CHHHHHHHSSSCHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHc--CHHHHHHHhCCCHHHHHHHHHhcCCce
Confidence 577777776 999999999999999999998766544
No 140
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=97.69 E-value=5e-05 Score=46.65 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=29.8
Q ss_pred CCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhhC
Q psy6501 135 GWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 135 glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~l 174 (174)
+.||.++|+.+|+++++|+.|| ...|.. .+..|+++|
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we--~~~p~~-~~~~i~~~~ 46 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK--EVIPEK-DAYRLEIVT 46 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC--SBCCHH-HHHHHHHHT
T ss_pred cCCHHHHHHHhCCCHHHHHHHH--hhCCHH-HHHHHHHHH
Confidence 3599999999999999999999 445654 444888765
No 141
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=97.66 E-value=7.3e-05 Score=50.07 Aligned_cols=54 Identities=9% Similarity=-0.007 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCC-CCCCHHHHHHHHHHhCcc
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR-GIPNQAIIGKMERALGIR 87 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~-~~P~~~~l~~la~~L~v~ 87 (174)
-..|..+....++|..++|+.+|||.+|||++.+|. ..++.++..++.++||..
T Consensus 9 ~~~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~~~~~Vs~~tr~rV~~algY~ 63 (93)
T 2l0k_A 9 TIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYH 63 (93)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTTHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCCHHHHHHHHHHHCCC
Confidence 355666777778999999999999999999999997 778999999999986654
No 142
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=97.64 E-value=0.00013 Score=50.39 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHhC--CChhHHHHHhcCCCCCCHHHHHHHHh
Q psy6501 125 KLLMQGRQAKGWSQKDLATKIN--EKPQIVNDYEGGRGIPNQAIIGKMER 172 (174)
Q Consensus 125 ~~i~~~R~~~glsq~ela~~lg--~~~s~i~~~E~G~~~P~~~~l~~i~~ 172 (174)
..++..|...|+|+.+.|..++ ++..+...||+|+...+++++..+..
T Consensus 6 ~ELkalR~ilgLt~~EaA~~i~~~vs~rtWQqWE~G~~~IP~~i~e~~~~ 55 (120)
T 1s4k_A 6 LELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE 55 (120)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHhccCCHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 3578889999999999999998 78999999999999999999988763
No 143
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=97.49 E-value=1.3e-05 Score=54.09 Aligned_cols=30 Identities=3% Similarity=0.014 Sum_probs=26.6
Q ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHcCC
Q psy6501 40 GRQAKGWSQKDLATKINEKPQIVNDYEGGR 69 (174)
Q Consensus 40 ~R~~~gltq~eLA~~igvs~~~is~~E~G~ 69 (174)
++.-.+++|..+|+.+||+.++||+|++|.
T Consensus 18 l~~la~~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 18 LNKIAMLGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HHHHHHHCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHhCCCHHHHHHHHhhh
Confidence 555667899999999999999999999974
No 144
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=97.45 E-value=0.00018 Score=44.80 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=34.6
Q ss_pred CCHHHHHHHhCCChhHHHHHhcCCC---CCCHHHHHHHHhh
Q psy6501 136 WSQKDLATKINEKPQIVNDYEGGRG---IPNQAIIGKMERA 173 (174)
Q Consensus 136 lsq~ela~~lg~~~s~i~~~E~G~~---~P~~~~l~~i~~~ 173 (174)
+|++|+|+.+|+++++|+++.+|.. .+++++..+|.++
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~a 41 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAV 41 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence 5899999999999999999999998 8999988887764
No 145
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=97.37 E-value=0.00016 Score=47.20 Aligned_cols=42 Identities=5% Similarity=0.015 Sum_probs=33.0
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccc
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~ 88 (174)
-.-++|+.+|+.+|++.++||+|.+|. ++.+..+..+|+..+
T Consensus 22 La~~gQ~~vAe~~GvdeStISR~k~~~----~~~~~~lLa~Lglkv 63 (83)
T 1zs4_A 22 IAMLGTEKTAEAVGVDKSQISRWKRDW----IPKFSMLLAVLEWGV 63 (83)
T ss_dssp HHHHCHHHHHHHHTSCHHHHHHHHHHT----HHHHHHHHHHHTTCC
T ss_pred HHHHhhHHHHHHhCCCHHHHhhhhhhH----HHHHHHHHHHhccCC
Confidence 344699999999999999999999974 556666666666554
No 146
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=97.36 E-value=0.00049 Score=52.89 Aligned_cols=50 Identities=10% Similarity=0.013 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHH
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGK 169 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~ 169 (174)
+..+...|+..|..+|++|.++|+++|+++++|+.||++...++...+..
T Consensus 29 ~~~~~~~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~~g~~~t~~k~a~ 78 (221)
T 2h8r_A 29 PWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAA 78 (221)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTTCCCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCchhHHHHHH
Confidence 45677899999999999999999999999999999999777777665543
No 147
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=97.23 E-value=0.00044 Score=52.21 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHH----------------hcCCCCCCHHHHHHHHhhC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDY----------------EGGRGIPNQAIIGKMERAL 174 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~----------------E~G~~~P~~~~l~~i~~~l 174 (174)
..+++.++... ...|+||.++|+.+|+++++|+++ ++|...|+...+.+++..|
T Consensus 10 l~eiG~ria~~-y~~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lfp~~~~ls~p~~~~L~k~~~~l 79 (192)
T 1zx4_A 10 IREIGLRLMRM-KNDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEM 79 (192)
T ss_dssp HHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHcCCCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHcCCcccCccchHHHHHHHHHHh
Confidence 35567777777 679999999999999999999997 7999999999999999875
No 148
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=97.19 E-value=0.00072 Score=42.32 Aligned_cols=39 Identities=23% Similarity=0.143 Sum_probs=34.9
Q ss_pred CCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHHHhh
Q psy6501 135 GWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERA 173 (174)
Q Consensus 135 glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i~~~ 173 (174)
.+++.|+|+..|+++++|+++.+|....++++..+|.++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~ 47 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKA 47 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999988899887777553
No 149
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=97.18 E-value=0.00038 Score=42.81 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCH
Q psy6501 126 LLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQ 164 (174)
Q Consensus 126 ~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~ 164 (174)
.|...+...| ++.++|+.+|+++++|+.|++|...|.+
T Consensus 5 ~l~~~~~~~g-s~~~~A~~lgis~~~vs~~~~~~~~~~l 42 (67)
T 2pij_A 5 PLSKYLEEHG-TQSALAAALGVNQSAISQMVRAGRSIEI 42 (67)
T ss_dssp EHHHHHHHTC-CHHHHHHHHTSCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcC-CHHHHHHHHCcCHHHHHHHHcCCCCCCe
Confidence 4566788899 9999999999999999999999887754
No 150
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=97.13 E-value=0.00075 Score=45.73 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=36.3
Q ss_pred HHHHHHHHHH-HHcC-CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHh
Q psy6501 32 DLAKLLMQGR-QAKG-WSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 84 (174)
Q Consensus 32 ~ig~~ik~~R-~~~g-ltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L 84 (174)
.++.|+.-.+ ...| +||.|+|+.+|+|++|||++-+--...+.+.-..|...|
T Consensus 43 ~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi~r~L~~l~~~~k~~l~~~l 97 (101)
T 1jhg_A 43 ALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVL 97 (101)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHHHHHHHHccHHHHHHHHHHh
Confidence 3555555544 2245 999999999999999999996544445555555555554
No 151
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A
Probab=97.09 E-value=0.00048 Score=55.82 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCC-CCCHHHHHHHHhhC
Q psy6501 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG-IPNQAIIGKMERAL 174 (174)
Q Consensus 122 ~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~-~P~~~~l~~i~~~l 174 (174)
..+..|+..|.+.|++|.++|++.|++...|+..|+|+. .+..+.+.+|+++|
T Consensus 230 aagv~LR~ar~ReglTQ~~LAe~TGIPq~hISeMenGKr~~IGkdeaR~LA~AL 283 (443)
T 3g7d_A 230 SAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRAL 283 (443)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHhcCCcCCccHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999 66999999999986
No 152
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=97.03 E-value=0.0016 Score=49.18 Aligned_cols=48 Identities=10% Similarity=0.040 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHH
Q psy6501 119 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAI 166 (174)
Q Consensus 119 ~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~ 166 (174)
-+..+...|+..+...|++|.++|+.+|++.++|+.|++|...++...
T Consensus 27 ~p~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l~~~~~~~~~k 74 (194)
T 1ic8_A 27 DPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQK 74 (194)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHH
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHhcCccccccc
Confidence 456778999999999999999999999999999999999987777653
No 153
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=97.03 E-value=0.013 Score=40.73 Aligned_cols=91 Identities=9% Similarity=0.065 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCCCCCCCCcccchhhhh
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTNKQPGTTKNTAKLDRE 110 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~~~~~~~~~~~~l~~~ 110 (174)
.+.-..|..+. ..|+|..++|+.+|+|++||.+|-+..... |... .-+
T Consensus 9 ~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~------------g~~~--~~g----------------- 56 (141)
T 1u78_A 9 DTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDPVSY------------GTSK--RAP----------------- 56 (141)
T ss_dssp HHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSGGGT------------TCCC--CCC-----------------
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHccccc------------CCcC--CCC-----------------
Confidence 34444555555 579999999999999999999997632110 1000 000
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCHHHHHHHhC--CChhHHHHHhc
Q psy6501 111 TEELKHEKVPLDLAKLLMQGRQAKGWSQKDLATKIN--EKPQIVNDYEG 157 (174)
Q Consensus 111 ~~~~~~~~~~~~~~~~i~~~R~~~glsq~ela~~lg--~~~s~i~~~E~ 157 (174)
....+.......|........++..+++..+| ++.++|.+|-.
T Consensus 57 ----r~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~ 101 (141)
T 1u78_A 57 ----RRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIK 101 (141)
T ss_dssp ----CCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHH
T ss_pred ----CCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHH
Confidence 00011122223344445567799999999999 78889998864
No 154
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=96.93 E-value=0.0014 Score=47.71 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=34.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCH-HHHHHHHHHhC
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEGGRGIPNQ-AIIGKMERALG 85 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~G~~~P~~-~~l~~la~~L~ 85 (174)
|+|+.++|+.+|||++||.+|.+. .|.. +.+.++|+.+-
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~--~p~~~~~l~~vad~~l 87 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTK--NQDFIAFKSEVADSFL 87 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH--CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHc--CcchHHHHHHHHHHHH
Confidence 899999999999999999999985 5775 88888888743
No 155
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=96.92 E-value=0.0082 Score=44.03 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHHHHHhC
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINE------KPQIVNDYEGGRGIPNQAIIGKMERALG 85 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igv------s~~~is~~E~G~~~P~~~~l~~la~~L~ 85 (174)
..|+..+|..|-..|+||.+++..+|. |+++|+++|+-. .+...+.++--.|.
T Consensus 16 ~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~--ls~kn~~klkPlL~ 74 (164)
T 2xsd_C 16 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ--LSFKNMCKLKPLLN 74 (164)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTC--SBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccC--CCHHHHHHcchhHH
Confidence 689999999999999999999999988 999999999644 45566666554443
No 156
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.88 E-value=0.0027 Score=35.90 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcC
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGG 68 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G 68 (174)
..|..+. ..|+|+.++|+.+|||++||.+|-+.
T Consensus 12 ~~i~~~~-~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 12 AQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 3444443 57999999999999999999999754
No 157
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.88 E-value=0.0026 Score=37.49 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
..-..+..+ ...|+|+.++|+.+|+|++||++|.+
T Consensus 19 ~~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 19 DLVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344566666 46899999999999999999999864
No 158
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=96.84 E-value=0.014 Score=41.95 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHHHHHhC
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINE------KPQIVNDYEGGRGIPNQAIIGKMERALG 85 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igv------s~~~is~~E~G~~~P~~~~l~~la~~L~ 85 (174)
..|+...+.-|-..|+||.+++..+|. |++||+++|+-. .+...+.+|--.|.
T Consensus 6 ~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~--ls~knm~kLkPlL~ 64 (146)
T 1au7_A 6 EQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQ--LSFKNACKLKAILS 64 (146)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTC--SBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccC--CChHHHHhcchHHH
Confidence 579999999999999999999999988 999999999644 45566666665544
No 159
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=96.37 E-value=0.004 Score=35.60 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCC
Q psy6501 36 LLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR 69 (174)
Q Consensus 36 ~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~ 69 (174)
.|..+. ..|+|..++|+.+|||++||.+|-+..
T Consensus 13 ~i~~l~-~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 13 QISRLL-EKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHH-HTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHH-HcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 344443 468999999999999999999997644
No 160
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=96.37 E-value=0.0034 Score=39.06 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=24.5
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
|+.+.... ||.+.|+.+|||+++||+|.+
T Consensus 7 L~~~~~~~--s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 7 LKDYAMRF--GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp HHHHHHHH--CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHC--CHHHHHHHhCCCHHHHHHHHH
Confidence 55555555 999999999999999999975
No 161
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=96.12 E-value=0.013 Score=42.64 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHHHHHh
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINE------KPQIVNDYEGGRGIPNQAIIGKMERAL 84 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igv------s~~~is~~E~G~~~P~~~~l~~la~~L 84 (174)
..||..+|..|...|+||.+++..+|. |+++|+++|.=. .+...+.++--+|
T Consensus 10 ~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~--lS~knm~klkPlL 67 (160)
T 1e3o_C 10 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN--LSFKNMSKLKPLL 67 (160)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTC--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccC--CChHHHHhcchhH
Confidence 589999999999999999999999999 999999999753 4555555554443
No 162
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=96.10 E-value=0.007 Score=38.24 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=25.6
Q ss_pred CHHHHHHHhCCChhHHHHHhcCCCCCCHH
Q psy6501 137 SQKDLATKINEKPQIVNDYEGGRGIPNQA 165 (174)
Q Consensus 137 sq~ela~~lg~~~s~i~~~E~G~~~P~~~ 165 (174)
+|.++|+.+|+++++|+.|+.|..+|...
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g~~iP~~~ 40 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQAGEIPPLR 40 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHTSCCHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhCCCCCHHH
Confidence 59999999999999999999997777543
No 163
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=96.02 E-value=0.006 Score=45.67 Aligned_cols=38 Identities=11% Similarity=0.263 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCC--CHHHHHHHhCCC-hhHHHHHhcC
Q psy6501 121 LDLAKLLMQGRQAKGW--SQKDLATKINEK-PQIVNDYEGG 158 (174)
Q Consensus 121 ~~~~~~i~~~R~~~gl--sq~ela~~lg~~-~s~i~~~E~G 158 (174)
..+.++|++.|++.|+ ||.++|+++|++ +++++.|+++
T Consensus 9 ~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 9 QEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 3467899999999999 999999999999 9999999874
No 164
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=95.92 E-value=0.18 Score=35.36 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 28 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 28 ~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
.+..++-.+|..+. ..|+|..++|+.+|+|++||++|-+
T Consensus 32 ~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 32 PLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34455555565555 4799999999999999999999964
No 165
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=95.78 E-value=0.013 Score=38.66 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~ 67 (174)
|+|..++|+.+|||++||.+|-+
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHHH
Confidence 89999999999999999999964
No 166
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=95.63 E-value=0.021 Score=38.51 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
...-++-.+--..|+||.|+|+.+|+|+++||++-+
T Consensus 21 ~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~ 56 (101)
T 2w7n_A 21 QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVH 56 (101)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 344566667788999999999999999999999853
No 167
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=95.59 E-value=0.038 Score=37.23 Aligned_cols=40 Identities=8% Similarity=0.008 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHH-hCCCHHHHHHHHcCC
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATK-INEKPQIVNDYEGGR 69 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~-igvs~~~is~~E~G~ 69 (174)
...|...|++-.+..++||+-||+. +|.++.++|.+-+--
T Consensus 19 Tk~I~~~ike~L~~~~isQ~~FA~~VLgrsQgtlS~lL~~P 59 (101)
T 1x2l_A 19 TAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARP 59 (101)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHccccchHHHHhcCC
Confidence 4589999999999999999999998 899999999997653
No 168
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=95.55 E-value=0.028 Score=36.46 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
...++-..+..+. ..|.|..++|+.+|||+++|.+|-+
T Consensus 23 ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 23 LTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344433444444 4689999999999999999999963
No 169
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=95.54 E-value=0.12 Score=36.82 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCC
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR 69 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~ 69 (174)
..++-..|..+. ..|+|..++|+.+|+|++||++|-+-.
T Consensus 27 s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 27 PEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp CHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444555555 479999999999999999999998643
No 170
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=95.52 E-value=0.022 Score=37.85 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCC-CCCCHHHHHHHHhh
Q psy6501 126 LLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR-GIPNQAIIGKMERA 173 (174)
Q Consensus 126 ~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~-~~P~~~~l~~i~~~ 173 (174)
.|.+.....+.+..|+|+.+|+|.+||+++.+|. ...++++..++.++
T Consensus 11 ~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~~~~~Vs~~tr~rV~~a 59 (93)
T 2l0k_A 11 KIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEI 59 (93)
T ss_dssp HHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTTHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 4445555666999999999999999999999997 67788888887654
No 171
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=95.33 E-value=0.059 Score=35.87 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHHcCCCCCCH------HHHHHHHHHhCcc
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKI-NEKPQIVNDYEGGRGIPNQ------AIIGKMERALGIR 87 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~i-gvs~~~is~~E~G~~~P~~------~~l~~la~~L~v~ 87 (174)
...|..+|+.-.+..+++|.-||+.+ +-|+.++|.+-+=...|.+ +.|.++-+.|+.+
T Consensus 19 Tk~i~~~I~~ELK~~~IsQa~FAk~vlnRsQGtLSelLR~~enPkP~~~~lW~~Lk~m~nWL~Lp 83 (101)
T 2csf_A 19 TAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLP 83 (101)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHhchhHHHHHHhcccCCCcchhhHHHHHHHHHHHHcCC
Confidence 45899999999999999999999966 9999999999875556665 4455555555554
No 172
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=95.19 E-value=0.031 Score=44.60 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=38.9
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH---HHHHHhCcccccc
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIG---KMERALGIRLRVN 91 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~---~la~~L~v~~~~l 91 (174)
.+..|.+|+|+.+|||.+|||+.-||....+.++-. +.++.||..+...
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~ 59 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPNKI 59 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCCHH
Confidence 456899999999999999999999999777776655 5566788776544
No 173
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=95.15 E-value=0.035 Score=43.94 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=37.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH---HHHHHhCccccc
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIG---KMERALGIRLRV 90 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~---~la~~L~v~~~~ 90 (174)
..|.+|+|+++|||.+|||+.-||....+.++-. +.++.||..+..
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~~~~vs~~tr~rV~~aa~~lgY~pn~ 50 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNA 50 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCSCH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 3699999999999999999999998777776654 556778876543
No 174
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=95.13 E-value=0.0072 Score=40.53 Aligned_cols=29 Identities=3% Similarity=0.065 Sum_probs=25.4
Q ss_pred HHhcCCCHHHHHHHhCCChhHHHHHhcCC
Q psy6501 131 RQAKGWSQKDLATKINEKPQIVNDYEGGR 159 (174)
Q Consensus 131 R~~~glsq~ela~~lg~~~s~i~~~E~G~ 159 (174)
+.-.+.+|..+|+.+|+++++|++|++|.
T Consensus 19 ~~la~~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 19 NKIAMLGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HHHHHHCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HHHHHHhHHHHHHHhCCCHHHHHHHHhhh
Confidence 33467899999999999999999999974
No 175
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=95.09 E-value=0.11 Score=37.17 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHHHH
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINE------KPQIVNDYEGGRGIPNQAIIGKMER 82 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igv------s~~~is~~E~G~~~P~~~~l~~la~ 82 (174)
..|++..+.-|-..|+||.+++..+|. |+++|+++|.-.- +...+.++.-
T Consensus 7 ~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~l--s~kn~~klkP 62 (151)
T 3d1n_I 7 REFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDI--TPKSAQKLKP 62 (151)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCS--CHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCC--ChhHHHHhch
Confidence 489999999999999999999999997 9999999997654 4454444443
No 176
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=95.04 E-value=0.036 Score=41.12 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHH
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKME 81 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la 81 (174)
+.+.+..++.+... |+||+++|+++|+|+++|+++-+=...| ...+..+.
T Consensus 38 piE~A~a~~~L~~~-G~t~eeiA~~lG~s~s~V~~~LrLl~Lp-~~v~~~v~ 87 (178)
T 1r71_A 38 PREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLLDLP-EKIADAFN 87 (178)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGGSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHHcCC-HHHHHHHH
Confidence 45667777777765 9999999999999999999998655443 35555544
No 177
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=95.03 E-value=0.015 Score=37.83 Aligned_cols=26 Identities=4% Similarity=0.059 Sum_probs=23.6
Q ss_pred cCCCHHHHHHHhCCChhHHHHHhcCC
Q psy6501 134 KGWSQKDLATKINEKPQIVNDYEGGR 159 (174)
Q Consensus 134 ~glsq~ela~~lg~~~s~i~~~E~G~ 159 (174)
..++|..+|+.+|+++|+|++|.+|.
T Consensus 23 a~~gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 23 AMLGTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HHHCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHhhHHHHHHhCCCHHHHhhhhhhH
Confidence 44789999999999999999999975
No 178
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=95.00 E-value=0.031 Score=34.55 Aligned_cols=34 Identities=12% Similarity=-0.001 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCC
Q psy6501 127 LMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIP 162 (174)
Q Consensus 127 i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P 162 (174)
|+..+... +|.++|+.+|+++++|+.|+++....
T Consensus 7 Lk~l~~~~--sq~~~A~~Lgvsq~aVS~~~~~~r~i 40 (65)
T 2cw1_A 7 LKKFVEDK--NQEYAARALGLSQKLIEEVLKRGLPV 40 (65)
T ss_dssp HHHHHTTS--CHHHHHHHSSSCHHHHHHHHHTTCCC
T ss_pred HHHHHHHc--CHHHHHHHhCCCHHHHHHHHHhcCCc
Confidence 33344444 99999999999999999999876543
No 179
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=94.79 E-value=0.047 Score=43.40 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=36.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH---HHHHHHhCccccc
Q psy6501 46 WSQKDLATKINEKPQIVNDYEGGRGIPNQAII---GKMERALGIRLRV 90 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E~G~~~P~~~~l---~~la~~L~v~~~~ 90 (174)
.|.+|+|+++|||.+|||+.-||....+.++- .+.++.||-.+..
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn~~~~vs~~tr~rV~~~a~~lgY~pn~ 48 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSA 48 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCCCH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCcCCCCHHHHHHHHHHHHHhCCCCCH
Confidence 48899999999999999999999977777654 4556678876543
No 180
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=94.77 E-value=0.025 Score=48.29 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHh------CCCHHHHHHHHcCCCCCC---HHHHHHHHHHhCc
Q psy6501 35 KLLMQGRQAKGWSQKDLATKI------NEKPQIVNDYEGGRGIPN---QAIIGKMERALGI 86 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~i------gvs~~~is~~E~G~~~P~---~~~l~~la~~L~v 86 (174)
+.|+++++ .+||++||+.+ +.|..+|.+||+|...|+ ...+..|...+..
T Consensus 21 ~~~~~~~~--~~~~~~~a~~l~~~~~~~~~~~~~~rw~~~~~~~~~~~~~~~~~l~~~~~~ 79 (482)
T 3me5_A 21 AMLEKLLQ--IYDVKMLVAQLNGVGENHWSAAILKRALANDSAWHRLSEKEFAHLQTLLPK 79 (482)
T ss_dssp HHHHHHHT--TSCHHHHHHHHHHTCSSCCCHHHHHHHHC-------CCTHHHHHHHTTSCC
T ss_pred HHHHHHHH--HcCHHHHHHHHHhhccCCCCHHHHHHHHcCCCCCccccHHHHHHHHhhCCC
Confidence 44455544 47999999999 899999999999987663 4445555554443
No 181
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=94.76 E-value=0.017 Score=35.68 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=21.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Q psy6501 46 WSQKDLATKINEKPQIVNDYEGGR 69 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E~G~ 69 (174)
||.+|+|+.+|||++||.+|....
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 689999999999999999998643
No 182
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=94.59 E-value=0.077 Score=31.60 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCC----HHHHHHHhCCCHHHHHHHHc
Q psy6501 32 DLAKLLMQGRQAKGWS----QKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 32 ~ig~~ik~~R~~~glt----q~eLA~~igvs~~~is~~E~ 67 (174)
+|-..+..+ ...|.| ..++|..+||++++|.+|-+
T Consensus 9 efK~~~~~~-~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 9 HFKLQVLES-YRNDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHHHHHHHH-HHHCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHH-HHcCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 444444333 346789 99999999999999999975
No 183
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.59 E-value=0.028 Score=36.75 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=29.5
Q ss_pred cccccchHHHHHHHHHH------HHHc-CCCHHHHHHHhCCCHHH-HHHH
Q psy6501 24 LKHEKVPLDLAKLLMQG------RQAK-GWSQKDLATKINEKPQI-VNDY 65 (174)
Q Consensus 24 ~~~~~~~~~ig~~ik~~------R~~~-gltq~eLA~~igvs~~~-is~~ 65 (174)
|+++.+...+|.-++.+ .... ++|+.|||+.+|+++++ +++.
T Consensus 2 m~~~~l~~~~g~~~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~ 51 (95)
T 2pg4_A 2 MDDETLRLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGL 51 (95)
T ss_dssp CCCGGGGSBHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTH
T ss_pred CcHHHHHHHhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHH
Confidence 44555555555554443 3444 79999999999999999 7765
No 184
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=94.58 E-value=0.04 Score=37.22 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~ 67 (174)
+||..|+|+.+|||..||..||.
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 47899999999999999999984
No 185
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=94.53 E-value=0.48 Score=31.35 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=28.0
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
..+|.++||+.+|+|++++++. +.+.+|+++..++
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~--------------fk~~~G~s~~~~~ 54 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQL--------------FQKEMGEHFTDYL 54 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHH--------------HHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH--------------HHHHHCcCHHHHH
Confidence 4799999999999999999876 5566777765443
No 186
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=94.46 E-value=0.44 Score=31.17 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=27.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
.+|..+||+.+|+|++++++. +.+.+|+++..++
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~--------------fk~~~g~s~~~~~ 52 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIM--------------FKKNFGIPFQDYL 52 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHH--------------HHHHHSSCHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH--------------HHHHHCcCHHHHH
Confidence 799999999999999998875 5566677765544
No 187
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=94.24 E-value=0.045 Score=34.83 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=24.7
Q ss_pred HHHHHHHHc---CCCHHHHHHHhCCCHHHHHHH
Q psy6501 36 LLMQGRQAK---GWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 36 ~ik~~R~~~---gltq~eLA~~igvs~~~is~~ 65 (174)
-|..+++.- ++|..|||+++|+|+++|++.
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~ 51 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 51 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 445566666 799999999999999999876
No 188
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=94.21 E-value=0.6 Score=30.78 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHHHHHHH---cCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 33 LAKLLMQGRQA---KGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 33 ig~~ik~~R~~---~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
+-..+..+... ..+|.++||+.+|+|++++++. +.+.+|+++..++
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~--------------fk~~~G~s~~~~~ 53 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHL--------------FRQQLGISVLSWR 53 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHH--------------HHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHH--------------HHHHHCcCHHHHH
Confidence 33444455554 4699999999999999999876 5566677765443
No 189
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=94.20 E-value=0.037 Score=44.49 Aligned_cols=48 Identities=8% Similarity=-0.030 Sum_probs=36.1
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH---HHHHHHhCcc-ccc
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAII---GKMERALGIR-LRV 90 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l---~~la~~L~v~-~~~ 90 (174)
.+..|.+|+|+++|||.+|||+.-||....+.++- .+.++.||.. +..
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn~ 58 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDP 58 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC-----
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCCH
Confidence 45679999999999999999999999866666554 4567778876 543
No 190
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=94.17 E-value=0.078 Score=40.79 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHH
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKME 81 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la 81 (174)
..+.+..++.+. ..|+|++++|+.+|+|+++|+++-+=... +.+.+..+.
T Consensus 120 ~~E~a~~~~~l~-~~g~t~~~iA~~lG~s~~~V~~~l~l~~l-~~~v~~~l~ 169 (230)
T 1vz0_A 120 PVEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRLLQL-PPEALEALE 169 (230)
T ss_dssp HHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHGGGS-CHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHcC-CHHHHHHHH
Confidence 345666677777 78999999999999999999999764433 334444444
No 191
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=94.12 E-value=0.1 Score=35.08 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
+..++-.+|..+. ..|+|..++|+.+|+|++||++|-+
T Consensus 18 ~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 18 LPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp CCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444445555554 4799999999999999999999964
No 192
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=94.10 E-value=0.085 Score=32.47 Aligned_cols=30 Identities=13% Similarity=-0.037 Sum_probs=23.3
Q ss_pred HHHHHHH-cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 37 LMQGRQA-KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 37 ik~~R~~-~gltq~eLA~~igvs~~~is~~E 66 (174)
|..+.+. ..+|..|||+.+|+|+++|++.-
T Consensus 16 L~~L~~~~~~~s~~eLA~~lglsr~tv~~~l 46 (67)
T 2heo_A 16 LQVLSDDGGPVAIFQLVKKCQVPKKTLNQVL 46 (67)
T ss_dssp HHHHHHHCSCEEHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3344444 46999999999999999998764
No 193
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=94.07 E-value=0.089 Score=31.87 Aligned_cols=31 Identities=16% Similarity=-0.012 Sum_probs=26.0
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
+-.++-..|+|++|+|+.+|+|+++|.++-.
T Consensus 23 il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ 53 (70)
T 2o8x_A 23 ALLLTQLLGLSYADAAAVCGCPVGTIRSRVA 53 (70)
T ss_dssp HHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3445567899999999999999999998753
No 194
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=94.06 E-value=0.088 Score=32.82 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=35.1
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc----CCCCCCHHHHHHHHHHhCccc
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYEG----GRGIPNQAIIGKMERALGIRL 88 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E~----G~~~P~~~~l~~la~~L~v~~ 88 (174)
..|+|.+|+|+.+|+|.++|..+-. --+..+...+..++..+|++.
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~~~~~~g~~~ 78 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVRMALAGGFGP 78 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTCCC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 6899999999999999999987653 225566677777776666543
No 195
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=94.04 E-value=0.14 Score=36.41 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~ 67 (174)
.||..|+|+.+|||..||.-||.
T Consensus 2 ~~~I~e~A~~~gvs~~tLR~Ye~ 24 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYER 24 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH
Confidence 47899999999999999999994
No 196
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=94.01 E-value=0.13 Score=34.91 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=28.4
Q ss_pred HHHHHHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 32 DLAKLLMQGRQ-AKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 32 ~ig~~ik~~R~-~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
.+++|++-++. ..|+|+.++|+.+|+|..||+++=+
T Consensus 44 alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 44 SLSQRFEVAKMLTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 46666655544 4789999999999999999998643
No 197
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=94.00 E-value=0.25 Score=35.57 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKIN------EKPQIVNDYEGGRGIPNQAIIGKMERALG 85 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~ig------vs~~~is~~E~G~~~P~~~~l~~la~~L~ 85 (174)
.+.|+..+|.-|-..|+||.+++..+| .|+++|+++|+-.- +...+.+|--.|.
T Consensus 12 l~~fa~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~l--s~~nm~kLkPlL~ 71 (155)
T 3l1p_A 12 LEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQL--SLKNMSKLRPLLE 71 (155)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhheecccHHHHHHHHHhhcCcccccccccccccccC--ChhhHhhcchHHH
Confidence 348999999999999999999888753 88999999997544 5556556555544
No 198
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=93.97 E-value=0.11 Score=36.01 Aligned_cols=38 Identities=8% Similarity=0.202 Sum_probs=29.5
Q ss_pred HHHHHHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHHcCC
Q psy6501 32 DLAKLLMQGRQ-AKGWSQKDLATKINEKPQIVNDYEGGR 69 (174)
Q Consensus 32 ~ig~~ik~~R~-~~gltq~eLA~~igvs~~~is~~E~G~ 69 (174)
.+++|++-++. ..|+|+.|+|+.+|+|..||++.-+--
T Consensus 61 aLs~R~eV~klL~~G~syreIA~~~g~S~aTIsRv~r~L 99 (119)
T 3kor_A 61 SLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSL 99 (119)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56666554443 478999999999999999999876543
No 199
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=93.84 E-value=0.086 Score=42.16 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
...+-.++..+....++||.|||+++|||+.||++.-
T Consensus 6 ~~~~~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL 42 (315)
T 2w48_A 6 DIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLL 42 (315)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3456678999999999999999999999999999874
No 200
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=93.75 E-value=0.2 Score=34.20 Aligned_cols=58 Identities=9% Similarity=0.060 Sum_probs=46.3
Q ss_pred CccccccccchhhcccccchHHHHHHHHHHHHHcCCCHHHHHH-HhCCCHHHHHHHHcCC
Q psy6501 11 TKNTAKLDRETEELKHEKVPLDLAKLLMQGRQAKGWSQKDLAT-KINEKPQIVNDYEGGR 69 (174)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~ig~~ik~~R~~~gltq~eLA~-~igvs~~~is~~E~G~ 69 (174)
..++.++|+... +...--...|..+|++..+..++||+-+|+ -+|.++.+||++-+--
T Consensus 11 ~~~~~~~qe~~~-~~~~lDTk~I~~~ikewL~~~~isQ~~FA~~ILgrsQgtlSdlL~~P 69 (111)
T 1wh8_A 11 SQAPGGIQEIVA-MSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRP 69 (111)
T ss_dssp CCCCCCHHHHHH-HCCCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHSC
T ss_pred CcccccHHHHHh-ccccCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCcCcHHHHHcCC
Confidence 567788887632 222333688999999999999999999999 6799999999987644
No 201
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=93.74 E-value=0.096 Score=37.48 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~ 67 (174)
-+|..|+|+.+|||.+||.-||.
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~ 38 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDK 38 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHH
T ss_pred ceeHHHHHHHHCcCHHHHHHHHH
Confidence 58999999999999999999994
No 202
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=93.73 E-value=0.19 Score=27.76 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=23.2
Q ss_pred hcCCCHHHHHHHhCCChhHHHHHhcC
Q psy6501 133 AKGWSQKDLATKINEKPQIVNDYEGG 158 (174)
Q Consensus 133 ~~glsq~ela~~lg~~~s~i~~~E~G 158 (174)
..|++..++|+.+|+++++|.+|-..
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 57899999999999999999988653
No 203
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=93.66 E-value=0.086 Score=32.16 Aligned_cols=25 Identities=4% Similarity=0.258 Sum_probs=22.7
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
..|+|.+|+|+.+|+|.++|..+..
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4699999999999999999999863
No 204
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=93.63 E-value=0.051 Score=34.80 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
|.+-+-+..+++...+|..|||+.++||..||.+-
T Consensus 2 m~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrd 36 (78)
T 1xn7_A 2 ASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAM 36 (78)
T ss_dssp CCHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHH
T ss_pred chHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHH
Confidence 44556677788888899999999999999999864
No 205
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=93.62 E-value=0.11 Score=33.73 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
+-.+|-..|+|.+|+|+.+|+|.++|..+-.
T Consensus 45 vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 45 VIQRSYYRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp HHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4456678899999999999999999998763
No 206
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=93.50 E-value=0.19 Score=29.05 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 125 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 125 ~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
..+... ...|+|+.++|+.+|+++++|+.|..
T Consensus 22 ~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 22 SVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444 36899999999999999999998864
No 207
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=93.47 E-value=0.13 Score=31.79 Aligned_cols=31 Identities=6% Similarity=0.223 Sum_probs=25.7
Q ss_pred HHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 37 LMQGRQA----KGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 37 ik~~R~~----~gltq~eLA~~igvs~~~is~~E~ 67 (174)
|-.+|-. .|+|.+|+|+.+|+|.++|..+..
T Consensus 18 il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 18 VLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp HHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3344554 799999999999999999999874
No 208
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=93.44 E-value=0.1 Score=35.11 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHH-HhCCCHHHHHHHHcCCCC---CC---HHHHHHHHHHhCccccc
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLAT-KINEKPQIVNDYEGGRGI---PN---QAIIGKMERALGIRLRV 90 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~-~igvs~~~is~~E~G~~~---P~---~~~l~~la~~L~v~~~~ 90 (174)
...|..+|++..+..++||+-+|+ -+|.++.++|++-+.-.. -+ -+...++-..|+.+.+.
T Consensus 19 Tk~I~~~ike~L~~~~isQ~~FA~~ILgrsqgtlSdlL~~PKpW~~L~~~Gre~fiRM~nWL~l~e~q 86 (101)
T 1wh6_A 19 TLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQ 86 (101)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHccCcCcHHHHhcCCCCHHHHhHHhHHHHHHHHHHhCCcHHH
Confidence 578999999999999999999999 679999999999875522 12 35556777777766543
No 209
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=93.36 E-value=0.1 Score=30.80 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=22.5
Q ss_pred HHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 42 QAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 42 ~~~gltq~eLA~~igvs~~~is~~E 66 (174)
-..|+|.+|+|+.+|+|.+||+.+-
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~ 34 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHR 34 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 4789999999999999999998764
No 210
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=93.10 E-value=0.047 Score=34.83 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=21.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~ 67 (174)
-+|..|+|+.+|||.+||..||.
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHH
Confidence 47899999999999999999997
No 211
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=93.00 E-value=0.15 Score=32.22 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
|..+.....+|..|||+.+|+|+++|+++-
T Consensus 6 l~~L~~~~~~s~~eLa~~lgvs~~tv~r~L 35 (81)
T 2htj_A 6 LEFLNRHNGGKTAEIAEALAVTDYQARYYL 35 (81)
T ss_dssp HHHHHHSCCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 334445567999999999999999998764
No 212
>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, Pro structure initiative; 1.70A {Shewanella oneidensis} SCOP: a.35.1.6
Probab=92.99 E-value=0.49 Score=33.01 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQ 74 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~ 74 (174)
--|+.+|...|+|..++|+..+.|..-|-.||.|....+.
T Consensus 10 ie~~ylr~slgl~~aqv~~l~k~se~dv~aweage~~~~~ 49 (166)
T 2ox6_A 10 IEMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPE 49 (166)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCH
T ss_pred HhHHHHHHHcCCCHHHHHHHhccCHHHhhhhhhcCCcCcc
Confidence 3578999999999999999999999999999999966553
No 213
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.95 E-value=0.2 Score=32.13 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=22.9
Q ss_pred HHHHHHHc---CCCHHHHHHHhCCCHHHHHHH
Q psy6501 37 LMQGRQAK---GWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 37 ik~~R~~~---gltq~eLA~~igvs~~~is~~ 65 (174)
|..+++.- .+|..|||+.+|+|+++|.+.
T Consensus 16 L~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~ 47 (81)
T 1qbj_A 16 LKFLEELGEGKATTAHDLSGKLGTPKKEINRV 47 (81)
T ss_dssp HHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 34444444 599999999999999998865
No 214
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=92.90 E-value=0.081 Score=34.82 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=26.2
Q ss_pred HHHHHHHH--HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 35 KLLMQGRQ--AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 35 ~~ik~~R~--~~gltq~eLA~~igvs~~~is~~E 66 (174)
..++.+.+ ..|++|+|||+++++++++|+.+-
T Consensus 24 ~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iL 57 (91)
T 2dk5_A 24 LVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKIL 57 (91)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 34566666 459999999999999999998764
No 215
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=92.80 E-value=0.39 Score=32.19 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHH-HhCCCHHHHHHHHcCCC
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLAT-KINEKPQIVNDYEGGRG 70 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~-~igvs~~~is~~E~G~~ 70 (174)
...|..+|++-.+..++||.-||+ -+|.++.++|.+-+.-+
T Consensus 19 Tk~I~~~Ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lLr~P~ 60 (101)
T 1wiz_A 19 SPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEE 60 (101)
T ss_dssp CTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhHHHHHHcCCC
Confidence 357899999999999999999999 57999999999976543
No 216
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=92.68 E-value=0.021 Score=45.35 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCccccc
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEGGRGIPNQAI---IGKMERALGIRLRV 90 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~---l~~la~~L~v~~~~ 90 (174)
...|.+|+|+++|||.+|||+.-||....+.++ +.+.++.||-.++.
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~pn~ 53 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNA 53 (332)
T ss_dssp --------------------------------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 357999999999999999999999986555554 45566778866544
No 217
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=92.67 E-value=0.19 Score=32.29 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=25.6
Q ss_pred HHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 37 LMQGRQA----KGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 37 ik~~R~~----~gltq~eLA~~igvs~~~is~~E~ 67 (174)
|-.+|-- .|+|.+|+|+.+|+|.++|..+..
T Consensus 26 vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 26 VLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp HHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3344554 799999999999999999999864
No 218
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=92.58 E-value=0.16 Score=36.85 Aligned_cols=37 Identities=8% Similarity=0.151 Sum_probs=30.6
Q ss_pred CCCHHHHHHHhCCChhHHHHHhcCCCCCCH-HHHHHHHhh
Q psy6501 135 GWSQKDLATKINEKPQIVNDYEGGRGIPNQ-AIIGKMERA 173 (174)
Q Consensus 135 glsq~ela~~lg~~~s~i~~~E~G~~~P~~-~~l~~i~~~ 173 (174)
++|+.++|+.+|++.+++.+|... .|.. +.+.+++..
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~--~p~~~~~l~~vad~ 85 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTK--NQDFIAFKSEVADS 85 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH--CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHc--CcchHHHHHHHHHH
Confidence 799999999999999999999995 5663 666666543
No 219
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=92.40 E-value=0.75 Score=30.62 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=31.1
Q ss_pred HHHHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 34 AKLLMQGRQA--KGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 34 g~~ik~~R~~--~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
...+..++.. ..+|.++||+.+|+|++++++. +.+.+|+++..++
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~--------------fk~~~G~s~~~~~ 56 (113)
T 3oio_A 10 TEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERL--------------FKQYLGTVPSKYY 56 (113)
T ss_dssp HHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHH--------------HHHHTSSCHHHHH
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHH--------------HHHHHCcCHHHHH
Confidence 3334444442 4699999999999999999886 4556666655443
No 220
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=92.31 E-value=0.23 Score=34.02 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHcC-CCHHHHHHHhCCCHHHHHHHHcCCC
Q psy6501 29 VPLDLAKLLMQGRQAKG-WSQKDLATKINEKPQIVNDYEGGRG 70 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~g-ltq~eLA~~igvs~~~is~~E~G~~ 70 (174)
+..++=..+..+-...| .++.++|+.+||++++|++|-++..
T Consensus 8 ~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~ 50 (131)
T 1hlv_A 8 LTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR 50 (131)
T ss_dssp CCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchh
Confidence 34444333433332445 4566999999999999999988754
No 221
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=92.24 E-value=0.13 Score=31.43 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=22.0
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
..|+|.+|+|+.+|+|+++|+.+-
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~ 47 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHI 47 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHH
Confidence 689999999999999999998764
No 222
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=92.18 E-value=0.12 Score=33.43 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
....+|-.+....|+|-.|||+.+|+|+++|.+.-
T Consensus 17 ~~~~~IL~lL~~~g~sa~eLAk~LgiSk~aVr~~L 51 (82)
T 1oyi_A 17 EIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKAL 51 (82)
T ss_dssp HHHHHHHHHHSSSTEEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 44555555555788999999999999999988753
No 223
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=92.14 E-value=0.25 Score=33.66 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=26.4
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
+-.++-..|+|++|+|+.+|+|++||..+-.
T Consensus 30 vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ 60 (113)
T 1s7o_A 30 YIELYYADDYSLAEIADEFGVSRQAVYDNIK 60 (113)
T ss_dssp HHHHHHHTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3445667899999999999999999998864
No 224
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=92.02 E-value=0.23 Score=31.53 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=22.1
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
..|+|.+|+|+.+|+|.+||..+-
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l 57 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHV 57 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 689999999999999999998764
No 225
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=91.97 E-value=0.26 Score=32.25 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=22.4
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
..|+|.+|+|+.+|+|.+||..+-
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l 63 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYV 63 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 899999999999999999998764
No 226
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=91.87 E-value=0.066 Score=35.04 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.+-+-+..+++...+|..|||+.++||..||.+.
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrD 36 (87)
T 2k02_A 3 SLMEVRDMLALQGRMEAKQLSARLQTPQPLIDAM 36 (87)
T ss_dssp CTHHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHH
Confidence 4455666777888899999999999999998764
No 227
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=91.86 E-value=0.06 Score=33.01 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=24.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q psy6501 46 WSQKDLATKINEKPQIVNDYEGGRGIPN 73 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E~G~~~P~ 73 (174)
++.+|+|+.+|+|++||.+|.+....|.
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g~fP~ 38 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSGDLPK 38 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHHHCCC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCCCCC
Confidence 6889999999999999999997655554
No 228
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=91.85 E-value=0.03 Score=44.53 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCccccc
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEGGRGIPNQAI---IGKMERALGIRLRV 90 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~---l~~la~~L~v~~~~ 90 (174)
+..|.+|+|+++|||.+|||+.-||....+.++ +.+.++.||..+..
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~ 52 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQPQQVSEQLREKVMQAVDALAYVPSR 52 (339)
T ss_dssp --------------------------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcCH
Confidence 357999999999999999999999986555544 44566667766553
No 229
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=91.85 E-value=0.29 Score=36.53 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHcCCCCC
Q psy6501 31 LDLAKLLMQGRQAK-GWSQKDLATKINEKPQIVNDYEGGRGIP 72 (174)
Q Consensus 31 ~~ig~~ik~~R~~~-gltq~eLA~~igvs~~~is~~E~G~~~P 72 (174)
.+.|.+...+.... ..+|++||+.+|+|++.||++-+--+.|
T Consensus 27 yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~LP 69 (189)
T 3mky_B 27 YERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLP 69 (189)
T ss_dssp HHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHhcCC
Confidence 56777776666553 7899999999999999999998644444
No 230
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=91.63 E-value=0.86 Score=34.77 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=21.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Q psy6501 46 WSQKDLATKINEKPQIVNDYEGGR 69 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E~G~ 69 (174)
||..|+|+.+|||.+||.-||+-.
T Consensus 1 ~~IgevA~~~Gvs~~TLRyYE~~G 24 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLREG 24 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCC
Confidence 678999999999999999999643
No 231
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=91.60 E-value=0.38 Score=28.97 Aligned_cols=34 Identities=9% Similarity=-0.019 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
-..|..+.+..+.++.+.|+.+|||++++.+.-+
T Consensus 21 ~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 21 KIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4568888899999999999999999999987643
No 232
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=91.53 E-value=0.31 Score=34.18 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Q psy6501 46 WSQKDLATKINEKPQIVNDYEGG 68 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E~G 68 (174)
||..|+|+.+|||..||..||.-
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~~ 23 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEK 23 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHC
Confidence 68899999999999999999853
No 233
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=91.49 E-value=0.27 Score=35.02 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=22.1
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~ 67 (174)
..+|..|+|+.+|||.+||.-||.
T Consensus 3 ~~~tI~evA~~~Gvs~~tLR~ye~ 26 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRALRYYDK 26 (146)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHH
Confidence 358999999999999999999994
No 234
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.38 E-value=0.29 Score=31.78 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 33 ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
-..-|..+....++|+.+||+.+|+++++|++.-
T Consensus 22 ~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l 55 (109)
T 1sfx_A 22 DVRIYSLLLERGGMRVSEIARELDLSARFVRDRL 55 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3344556666788999999999999999998764
No 235
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=91.26 E-value=0.15 Score=34.23 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=26.8
Q ss_pred cC-CCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHH
Q psy6501 134 KG-WSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKM 170 (174)
Q Consensus 134 ~g-lsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i 170 (174)
.| +||.++|+.+|+|.++|+++.+--.-.+..+-..|
T Consensus 56 ~ge~TQREIA~~lGiS~stISRi~r~L~~l~~~~k~~l 93 (101)
T 1jhg_A 56 RGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWL 93 (101)
T ss_dssp HCCSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCcCHHHHHHHHCCChhhhhHHHHHHHHccHHHHHHH
Confidence 45 99999999999999999998553333344443333
No 236
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=91.16 E-value=0.36 Score=26.90 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=23.6
Q ss_pred hcCCCHHHHHHHhCCChhHHHHHhcCC
Q psy6501 133 AKGWSQKDLATKINEKPQIVNDYEGGR 159 (174)
Q Consensus 133 ~~glsq~ela~~lg~~~s~i~~~E~G~ 159 (174)
..|++..++|+.+|+++++|.+|-...
T Consensus 19 ~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 19 EKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 467999999999999999999987643
No 237
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=91.16 E-value=0.17 Score=33.64 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~ 67 (174)
|.|..++|..+|||+++|.+|-+
T Consensus 30 g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHH
Confidence 38999999999999999999964
No 238
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=90.99 E-value=0.44 Score=32.23 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=39.9
Q ss_pred HHHHHHHHH-HHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH-HHHHHhC
Q psy6501 32 DLAKLLMQG-RQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIG-KMERALG 85 (174)
Q Consensus 32 ~ig~~ik~~-R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~-~la~~L~ 85 (174)
.+++-|-.- ..-..+|..|||+++|||++||.++-+--..-....+. .|+..+.
T Consensus 25 ~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~efk~~l~~~~~ 80 (111)
T 2o3f_A 25 KLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMRVAGDLA 80 (111)
T ss_dssp HHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344444433 33468999999999999999999999877777777666 4555553
No 239
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=90.96 E-value=0.042 Score=44.00 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCccccc
Q psy6501 46 WSQKDLATKINEKPQIVNDYEGGRGIPNQAI---IGKMERALGIRLRV 90 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E~G~~~P~~~~---l~~la~~L~v~~~~ 90 (174)
.|.+|+|+++|||.+|||+.-||....+.++ +.+.++.||..+..
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~aa~~lgY~pn~ 56 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALADNPAVAASTRERIQQLASDLGYRANA 56 (348)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCcCH
Confidence 6999999999999999999999975555544 45566778766543
No 240
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=90.88 E-value=0.37 Score=31.30 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=21.4
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
.|+|.+|+|+.+|+|.+||..+-
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~ 65 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSL 65 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 89999999999999999998764
No 241
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=90.78 E-value=0.045 Score=43.56 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCccccc
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEGGRGIPNQAI---IGKMERALGIRLRV 90 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~---l~~la~~L~v~~~~ 90 (174)
+..|.+|+|+++|||.+|||+.-||....+.++ +.+.++.||..+..
T Consensus 5 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~ 54 (333)
T 3jvd_A 5 AKSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVPNQ 54 (333)
T ss_dssp --------------------------------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 457999999999999999999999986555554 44566777776554
No 242
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.74 E-value=0.22 Score=32.49 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=24.8
Q ss_pred HHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 36 LLMQGRQ-AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 36 ~ik~~R~-~~gltq~eLA~~igvs~~~is~~E 66 (174)
.|..+.. ..++|+.|||+.+|+|+++|+++-
T Consensus 26 ~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l 57 (109)
T 2d1h_A 26 VLLKMVEIEKPITSEELADIFKLSKTTVENSL 57 (109)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3444444 678999999999999999999864
No 243
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=90.73 E-value=0.35 Score=32.80 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=26.1
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
+-.++-..|+|.+|+|+.+|+|.+||..+-.
T Consensus 33 vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ 63 (113)
T 1xsv_A 33 YLELFYLEDYSLSEIADTFNVSRQAVYDNIR 63 (113)
T ss_dssp HHHHHHTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3345667899999999999999999998764
No 244
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=90.59 E-value=0.048 Score=43.26 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCH---HHHHHHHHHhCcccccc
Q psy6501 46 WSQKDLATKINEKPQIVNDYEGGRGIPNQ---AIIGKMERALGIRLRVN 91 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E~G~~~P~~---~~l~~la~~L~v~~~~l 91 (174)
.|.+|+|+.+|||.+|||+.-||....+. +.+.+.++.||-.++..
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~pn~~ 52 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNLL 52 (338)
T ss_dssp -------------------------------------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCcCHH
Confidence 58999999999999999999999855444 44556777788766543
No 245
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=90.54 E-value=0.45 Score=33.98 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-|..+.+...+|..|||+.+|+|++++++.
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 44 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPSPCLRR 44 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4566667777899999999999999998875
No 246
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=90.46 E-value=0.05 Score=43.58 Aligned_cols=49 Identities=10% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCcccccc
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAI---IGKMERALGIRLRVN 91 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~---l~~la~~L~v~~~~l 91 (174)
.+-.|.+|+|+++|||.+|||+.-||....+.++ +.+.++.||..++..
T Consensus 10 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~~ 61 (355)
T 3e3m_A 10 HRPVTMRDVAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMNYVPDQV 61 (355)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCcHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 4457999999999999999999999985555544 556667777766543
No 247
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=90.37 E-value=0.43 Score=31.73 Aligned_cols=24 Identities=4% Similarity=0.273 Sum_probs=22.5
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~ 67 (174)
.|+|.+|+|+.+|+|.++|.+++.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 689999999999999999999984
No 248
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=90.17 E-value=0.29 Score=32.91 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEGG 68 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~G 68 (174)
-+|..|+|+.+|||+.||..||.-
T Consensus 2 ~~~i~e~A~~~gvs~~tLR~ye~~ 25 (109)
T 1r8d_A 2 KYQVKQVAEISGVSIRTLHHYDNI 25 (109)
T ss_dssp CBCHHHHHHHHSCCHHHHHHHHHT
T ss_pred CccHHHHHHHHCcCHHHHHHHHHC
Confidence 378999999999999999999853
No 249
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=90.13 E-value=0.54 Score=31.91 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=29.7
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 28 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 28 ~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.+...-..-|..+...-++|+.+||+.+|+++++|+..-
T Consensus 26 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l 64 (138)
T 3bpv_A 26 NLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTL 64 (138)
T ss_dssp TCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 344444455666666788999999999999999998754
No 250
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=90.10 E-value=0.6 Score=33.69 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHHcCCC-----CCCHHHHHHHHHHhCcc
Q psy6501 30 PLDLAKLLMQGRQAKGWSQKDLATKI-NEKPQIVNDYEGGRG-----IPNQAIIGKMERALGIR 87 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gltq~eLA~~i-gvs~~~is~~E~G~~-----~P~~~~l~~la~~L~v~ 87 (174)
...|...|+...+..+++|..+|+.+ |+++.++|.+-+.-. ....+...++-..|..+
T Consensus 6 t~~i~~~i~~~l~~~~i~q~~fa~~ilg~sq~~ls~~l~~pkpw~~l~~g~~~y~rm~~WL~~p 69 (164)
T 2d5v_A 6 TKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEP 69 (164)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHHSCCCGGGCSTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHhcCCchhHHHHcCCCCCHHHHcccchHHHHHHHHHhcc
Confidence 46799999999999999999999966 999999999986431 12234444555555544
No 251
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=89.99 E-value=0.6 Score=29.93 Aligned_cols=34 Identities=6% Similarity=-0.001 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
-..|..+.+..+.++.+.|+.+|||++|+.+.-+
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4567888889999999999999999999987644
No 252
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=89.90 E-value=0.059 Score=43.09 Aligned_cols=45 Identities=11% Similarity=-0.079 Sum_probs=0.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHH---HHHHHHHHhCccccc
Q psy6501 46 WSQKDLATKINEKPQIVNDYEGGRGIPNQA---IIGKMERALGIRLRV 90 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E~G~~~P~~~---~l~~la~~L~v~~~~ 90 (174)
.|.+|+|+++|||.+|||+.-||....+.+ .+.+.++.||-.+..
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~~~~vs~~tr~rV~~~a~~lgY~pn~ 51 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNR 51 (349)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 699999999999999999999998655544 455667778776554
No 253
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=89.88 E-value=0.59 Score=32.17 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=31.9
Q ss_pred ccccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 25 KHEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 25 ~~~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.+-.+...=..-|..+...-++|+.+||+.+|++++++++.-
T Consensus 25 ~~~~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 66 (145)
T 3g3z_A 25 GQQDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVC 66 (145)
T ss_dssp HTTTCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 333444445566777777788999999999999999998863
No 254
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=89.83 E-value=0.061 Score=42.57 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCccccc
Q psy6501 46 WSQKDLATKINEKPQIVNDYEGGRGIPNQAI---IGKMERALGIRLRV 90 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E~G~~~P~~~~---l~~la~~L~v~~~~ 90 (174)
.|.+|+|+++|||.+|||+.-||....+.++ +.+.++.||..+..
T Consensus 3 ~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~~~~lgY~pn~ 50 (330)
T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNNTGYVSEDAREKIQKVVDELNYTPNA 50 (330)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcCH
Confidence 5899999999999999999999986555544 44566777766554
No 255
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=89.75 E-value=1.2 Score=30.34 Aligned_cols=22 Identities=5% Similarity=-0.026 Sum_probs=19.8
Q ss_pred cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~ 65 (174)
..+|.++||+.+|+|++++++.
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~ 47 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRM 47 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 3599999999999999999876
No 256
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=89.71 E-value=0.35 Score=32.58 Aligned_cols=51 Identities=4% Similarity=0.148 Sum_probs=36.7
Q ss_pred HHHHHHH-HHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH-HHHH
Q psy6501 32 DLAKLLM-QGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIG-KMER 82 (174)
Q Consensus 32 ~ig~~ik-~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~-~la~ 82 (174)
.+++-|- ...+-..+|..|||+.+|||++||.++-+--..-....+. .|+.
T Consensus 21 ~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l~~ 73 (107)
T 3iwf_A 21 KIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLSK 73 (107)
T ss_dssp HHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHHT
T ss_pred HHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3444433 3445678999999999999999999998766666666555 3443
No 257
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=89.61 E-value=0.85 Score=30.45 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=41.6
Q ss_pred CCCCCHH-HHHHHHHHhCcccccccCCCCCCCCCcccchhhhhhhhhhcccccHHHHHHHHHHHHhcCCCHHHHHHHhCC
Q psy6501 69 RGIPNQA-IIGKMERALGIRLRVNAGTNKQPGTTKNTAKLDRETEELKHEKVPLDLAKLLMQGRQAKGWSQKDLATKINE 147 (174)
Q Consensus 69 ~~~P~~~-~l~~la~~L~v~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~~glsq~ela~~lg~ 147 (174)
...++++ .+..+|++|||++++|.+..-. .... .+-.+...| .|+..++|..+++..+|.
T Consensus 2 ~~~it~~~I~~~Va~~f~v~~~dl~s~~R~-----------~~i~------~aRqiAmYL--~r~~t~~Sl~~IG~~fgR 62 (101)
T 3pvv_A 2 PHMISAATIMAATAEYFDTTVEELRGPGKT-----------RALA------QSRQIAMYL--CRELTDLSLPKIGQAFGR 62 (101)
T ss_dssp ---CCHHHHHHHHHHHTTCCHHHHHSSCCC-----------HHHH------HHHHHHHHH--HHHHCCCCHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHhCCCCC-----------chhh------HHHHHHHHH--HHHHhCCCHHHHHHHHCC
Confidence 3344544 4558999999999999864421 0000 011223333 567789999999999998
Q ss_pred ChhHHH
Q psy6501 148 KPQIVN 153 (174)
Q Consensus 148 ~~s~i~ 153 (174)
..++|.
T Consensus 63 DHsTV~ 68 (101)
T 3pvv_A 63 DHTTVM 68 (101)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 887653
No 258
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=89.61 E-value=0.58 Score=32.94 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-|..+++...+|..|||+.+|+|++++++.
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 42 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPETIHVR 42 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4566677778899999999999999999875
No 259
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=89.59 E-value=0.65 Score=30.65 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHH-HhCCCHHHHHHHHcCCC
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLAT-KINEKPQIVNDYEGGRG 70 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~-~igvs~~~is~~E~G~~ 70 (174)
..|...|+.-.+..++||.-||+ -+|.|+.++|.+-+.-.
T Consensus 10 ~~I~~~ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lL~~Pk 50 (93)
T 2o4a_A 10 SEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEE 50 (93)
T ss_dssp TTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhhHHHHHHcCCC
Confidence 47899999999999999999999 66999999999876544
No 260
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=89.55 E-value=3 Score=27.19 Aligned_cols=22 Identities=5% Similarity=-0.049 Sum_probs=20.0
Q ss_pred cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~ 65 (174)
..+|.++||+.+|+|++++++.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~ 38 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKA 38 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 4699999999999999999876
No 261
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=89.54 E-value=0.52 Score=32.34 Aligned_cols=39 Identities=21% Similarity=0.105 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 28 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 28 ~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.+...=..-|..+...-++|+.+||+.+|++++++++.-
T Consensus 34 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l 72 (143)
T 3oop_A 34 DVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIV 72 (143)
T ss_dssp SSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHH
Confidence 343444455666777789999999999999999999753
No 262
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=89.48 E-value=0.79 Score=30.36 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHHH------cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQA------KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~------~gltq~eLA~~igvs~~~is~~E 66 (174)
+.......+..++.. ..+++.+||+.++++++++++.-
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l 57 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVL 57 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHH
Confidence 556677778878777 67999999999999999998753
No 263
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=89.39 E-value=0.34 Score=33.20 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcC--CCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKG--WSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~g--ltq~eLA~~igvs~~~is~~E 66 (174)
...+..+.+.-+ +|+.|||+.+|+|++||++.-
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L 63 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSV 63 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 345666666667 999999999999999998763
No 264
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=89.28 E-value=0.89 Score=26.73 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=22.3
Q ss_pred hcCCC----HHHHHHHhCCChhHHHHHhc
Q psy6501 133 AKGWS----QKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 133 ~~gls----q~ela~~lg~~~s~i~~~E~ 157 (174)
..|.+ ..++|..+|+++++|..|-.
T Consensus 19 ~~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 19 RNDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 46778 99999999999999999965
No 265
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=89.16 E-value=0.18 Score=32.52 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=22.6
Q ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 39 QGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 39 ~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.+....++|+.|||+.+|+|+++|++.-
T Consensus 32 ~l~~~~~~s~~ela~~l~is~~tvs~~l 59 (99)
T 3cuo_A 32 MLSGSPGTSAGELTRITGLSASATSQHL 59 (99)
T ss_dssp HHTTCCSEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3434447999999999999999998863
No 266
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=89.07 E-value=0.77 Score=31.10 Aligned_cols=39 Identities=8% Similarity=-0.022 Sum_probs=29.4
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 28 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 28 ~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.+...=..-|..+...-++|+.+||+.+|+++++|++.-
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 73 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVV 73 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 344344455666666679999999999999999998763
No 267
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=88.93 E-value=0.48 Score=32.57 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
+...=..-|..+...-++|+.+||+.+|+++++|++.-
T Consensus 35 lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 72 (142)
T 3ech_A 35 LTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKI 72 (142)
T ss_dssp CCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHH
Confidence 33344455666677779999999999999999888763
No 268
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=88.77 E-value=0.47 Score=33.19 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-|..+.+...+|+.|||+.+|+|++++++.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 39 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTER 39 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 3455666677899999999999999998765
No 269
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=88.77 E-value=0.51 Score=33.82 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=27.2
Q ss_pred HHHHHH-HHHcCCCHHHHHHHh-----CCCHHHHHHHHc
Q psy6501 35 KLLMQG-RQAKGWSQKDLATKI-----NEKPQIVNDYEG 67 (174)
Q Consensus 35 ~~ik~~-R~~~gltq~eLA~~i-----gvs~~~is~~E~ 67 (174)
+.|+++ .+..-.||+||++.+ +||++|||+.-+
T Consensus 8 ~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~ 46 (149)
T 1b4a_A 8 IKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIK 46 (149)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 455665 666677999999999 999999999874
No 270
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=88.69 E-value=0.73 Score=31.62 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHH-HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQ-AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R~-~~gltq~eLA~~igvs~~~is~~E 66 (174)
+...-..-|..+.. ..++|+.+||+.+|+++++|+..-
T Consensus 33 l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l 71 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALL 71 (147)
T ss_dssp HHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHH
Confidence 33334456667777 789999999999999999998763
No 271
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=88.65 E-value=0.75 Score=29.78 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCChhHHHHHhc
Q psy6501 135 GWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 135 glsq~ela~~lg~~~s~i~~~E~ 157 (174)
|.|..++|..+|+++++|.+|-.
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHHH
Confidence 89999999999999999998853
No 272
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=88.57 E-value=0.49 Score=33.28 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-|..+.....+|+.|||+.+|+|++++++.
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~ 41 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGLSVSAVQSR 41 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4456666677899999999999999998875
No 273
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=88.39 E-value=0.74 Score=39.20 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHh------CCChhHHHHHhcCCCCCCH
Q psy6501 125 KLLMQGRQAKGWSQKDLATKI------NEKPQIVNDYEGGRGIPNQ 164 (174)
Q Consensus 125 ~~i~~~R~~~glsq~ela~~l------g~~~s~i~~~E~G~~~P~~ 164 (174)
++|.+.+ ..+||+++|+.+ +.+..++.+||+|+..|+.
T Consensus 21 ~~~~~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~rw~~~~~~~~~ 64 (482)
T 3me5_A 21 AMLEKLL--QIYDVKMLVAQLNGVGENHWSAAILKRALANDSAWHR 64 (482)
T ss_dssp HHHHHHH--TTSCHHHHHHHHHHTCSSCCCHHHHHHHHC-------
T ss_pred HHHHHHH--HHcCHHHHHHHHHhhccCCCCHHHHHHHHcCCCCCcc
Confidence 5555444 459999999999 8889999999999888753
No 274
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=88.36 E-value=0.63 Score=27.51 Aligned_cols=28 Identities=11% Similarity=-0.046 Sum_probs=23.6
Q ss_pred HHHHcCCCHHHHHHHh-----CCCHHHHHHHHc
Q psy6501 40 GRQAKGWSQKDLATKI-----NEKPQIVNDYEG 67 (174)
Q Consensus 40 ~R~~~gltq~eLA~~i-----gvs~~~is~~E~ 67 (174)
+.....+|.+||++.+ +||.+||++.-+
T Consensus 14 l~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 14 ITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3445679999999999 999999998764
No 275
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=88.34 E-value=0.5 Score=30.39 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.9
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
..|+|.+|+|+.+|+|.+||..+-
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l 65 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHV 65 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 689999999999999999998764
No 276
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=88.30 E-value=0.59 Score=31.80 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..-|..+...-++|+.+||+.+|+|+++|+..-
T Consensus 34 ~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l 66 (142)
T 3bdd_A 34 YSILQTLLKDAPLHQLALQERLQIDRAAVTRHL 66 (142)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 345666666778999999999999999998763
No 277
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=88.28 E-value=0.35 Score=31.33 Aligned_cols=21 Identities=19% Similarity=-0.005 Sum_probs=19.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q psy6501 46 WSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E 66 (174)
+||.+||+.+|+++++|+++-
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l 51 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLII 51 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHH
Confidence 999999999999999999873
No 278
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=88.25 E-value=0.95 Score=31.14 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
+...-..-|..+...-++|+.+||+.+|+++++|+..
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~ 76 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDL 76 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHH
Confidence 3333344556666677899999999999999999876
No 279
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=88.25 E-value=0.42 Score=31.70 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.7
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
..|+|.+|+|+.+|+|.+||..+-
T Consensus 47 ~~G~s~~EIA~~L~iS~~TV~~~l 70 (99)
T 1p4w_A 47 AEGFLVTEIAKKLNRSIKTISSQK 70 (99)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999998774
No 280
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=88.22 E-value=0.36 Score=31.05 Aligned_cols=29 Identities=3% Similarity=0.020 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
|..+....++|+.+||+.+|+|+++|++.
T Consensus 22 L~~L~~~~~~~~~ela~~l~is~~tvs~~ 50 (100)
T 1ub9_A 22 MIFLLPRRKAPFSQIQKVLDLTPGNLDSH 50 (100)
T ss_dssp HHHHHHHSEEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHhcCCcCHHHHHHHHCcCHHHHHHH
Confidence 44455567899999999999999999875
No 281
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=88.21 E-value=0.49 Score=32.66 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
+...=..-|..+...-++|+.+||+.+|+++++|++.-
T Consensus 38 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 75 (148)
T 3nrv_A 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
T ss_dssp CCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 33333455666667779999999999999999999874
No 282
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=88.18 E-value=1 Score=28.72 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=22.2
Q ss_pred hcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 133 AKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 133 ~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
..|.+..++|+.+|+++++|.+|-.
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3689999999999999999998853
No 283
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=88.11 E-value=0.63 Score=31.68 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHc--CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQAK--GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~--gltq~eLA~~igvs~~~is~~E 66 (174)
+...-..-|..+...- ++|+.+||+.+|+++++|++.-
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l 68 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLL 68 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHH
Confidence 3334445566666654 8999999999999999998864
No 284
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=88.09 E-value=0.84 Score=31.02 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHHHc--CCCHHHHHHHhCCCHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQAK--GWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~--gltq~eLA~~igvs~~~is~~ 65 (174)
+...-..-|..+...- ++|+.+||+.+|+++++|+..
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~ 70 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVL 70 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHH
Confidence 3333344566666655 799999999999999998876
No 285
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=88.06 E-value=1 Score=30.49 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
+...=..-|..+...-++|+.+||+.+|+++++|+..-
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l 69 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRML 69 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHH
Confidence 33333445566666778999999999999999998763
No 286
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=88.00 E-value=1.1 Score=30.82 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=23.6
Q ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 39 QGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 39 ~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.+....++|+.+||+.+|+|+++|++.-
T Consensus 16 l~~~~~~~~~~ela~~l~vs~~tvs~~l 43 (142)
T 1on2_A 16 LIEEKGYARVSDIAEALAVHPSSVTKMV 43 (142)
T ss_dssp HHHHHSSCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHhhcCCCCHHHHHHHhCCCHHHHHHHH
Confidence 3445678999999999999999988764
No 287
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=87.90 E-value=0.65 Score=32.73 Aligned_cols=35 Identities=23% Similarity=0.059 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.=..-|..+...-++|+.+||+.+|+++++|++.-
T Consensus 47 ~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 81 (162)
T 3k0l_A 47 PQFTALSVLAAKPNLSNAKLAERSFIKPQSANKIL 81 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 33445556666678889999999998888888753
No 288
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=87.82 E-value=0.57 Score=30.37 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
-..|....+..+.++.+.|+.+|||++|+.+.
T Consensus 53 ~~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rk 84 (91)
T 1ntc_A 53 RTLLTTALRHTQGHKQEAARLLGWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHH
Confidence 56678888889999999999999999999765
No 289
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=87.82 E-value=1.1 Score=29.32 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCcccccccCCCCCCCCCcccchhhhhhhhhhcccccHHHHHHHHHHHHhcCCCHHHHHHHh-CCChhHHH
Q psy6501 75 AIIGKMERALGIRLRVNAGTNKQPGTTKNTAKLDRETEELKHEKVPLDLAKLLMQGRQAKGWSQKDLATKI-NEKPQIVN 153 (174)
Q Consensus 75 ~~l~~la~~L~v~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~~glsq~ela~~l-g~~~s~i~ 153 (174)
..+..+|++|||++++|.+..-. ..... +-. -.+--.|+..++|..+++..+ |...++|.
T Consensus 5 ~I~~~Va~~f~i~~~dl~s~~R~-----------~~i~~------aRq--iamyL~r~~t~~Sl~~IG~~fggrdHsTV~ 65 (94)
T 1j1v_A 5 NIQKTVAEYYKIKVADLLSKRRS-----------RSVAR------PRQ--MAMALAKELTNHSLPEIGDAFGGRDHTTVL 65 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHSCCCC-----------HHHHH------HHH--HHHHHHHHHSCCCHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHhCCCCC-----------chhHH------HHH--HHHHHHHHHHCcCHHHHHHHhCCCCHHHHH
Confidence 45568999999999999864321 00000 111 233336778999999999999 78888654
No 290
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=87.55 E-value=0.58 Score=32.46 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..-|..+ ...++|+.+||+.+|+++++|++.-
T Consensus 41 ~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l 72 (151)
T 3kp7_A 41 SHVLNML-SIEALTVGQITEKQGVNKAAVSRRV 72 (151)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHH
T ss_pred HHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHH
Confidence 3456666 7889999999999999999998753
No 291
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=87.54 E-value=0.59 Score=32.83 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-|..+.+...+|..|||+.+|+|++++++.
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 43 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIARR 43 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4456666778899999999999999998764
No 292
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=87.38 E-value=0.59 Score=32.45 Aligned_cols=38 Identities=0% Similarity=0.035 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
+...=..-|..+...-++|+.+||+.+++++++|+..-
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l 76 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPML 76 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 33344455666666788999999999999999988753
No 293
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=87.27 E-value=0.71 Score=31.38 Aligned_cols=38 Identities=11% Similarity=-0.050 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
+...=..-|..+...-++|+.+||+.+|+++++|+..-
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l 71 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVL 71 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHH
Confidence 33333445666667778999999999999999988754
No 294
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=87.24 E-value=0.38 Score=29.33 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCHHHHHHHhCCChhHHHHHhcCCCCCC
Q psy6501 136 WSQKDLATKINEKPQIVNDYEGGRGIPN 163 (174)
Q Consensus 136 lsq~ela~~lg~~~s~i~~~E~G~~~P~ 163 (174)
++.+++|+.+|+|++|+.+|..-.. |.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~-P~ 29 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM-PV 29 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC-CC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC-Ce
Confidence 6789999999999999999987533 54
No 295
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=87.18 E-value=0.81 Score=29.55 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=21.1
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~ 65 (174)
...+|..|||+.+|+|+++|++.
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~ 63 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYH 63 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHH
Confidence 57799999999999999999984
No 296
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=87.14 E-value=0.63 Score=32.11 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
|..+.....+|..|||+.+|+|++++++.
T Consensus 10 l~~L~~~~~~~~~ela~~lg~s~~tv~~~ 38 (141)
T 1i1g_A 10 LEILEKDARTPFTEIAKKLGISETAVRKR 38 (141)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 44555666799999999999999999764
No 297
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=87.08 E-value=1 Score=30.76 Aligned_cols=34 Identities=9% Similarity=-0.046 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 33 ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
-..-|..+...-++|+.+||+.+|+++++|+..-
T Consensus 35 ~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l 68 (145)
T 2a61_A 35 QFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLV 68 (145)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHH
Confidence 3445556666778999999999999999998764
No 298
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=87.07 E-value=0.49 Score=31.72 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.9
Q ss_pred hcCCCHHHHHHHhCCChhHHHHH
Q psy6501 133 AKGWSQKDLATKINEKPQIVNDY 155 (174)
Q Consensus 133 ~~glsq~ela~~lg~~~s~i~~~ 155 (174)
..|++|.++|+.+|+|..+|+++
T Consensus 32 v~g~tQ~eIA~~lGiSR~~Vsrl 54 (101)
T 2w7n_A 32 VDGKPQATFATSLGLTRGAVSQA 54 (101)
T ss_dssp TTCCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 47899999999999999999875
No 299
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=87.01 E-value=0.74 Score=32.65 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHHHHHcCCCHHHHHH-HhCCCHHHHHHHHcCCCC------CCHHHHHHHHHHhCccc
Q psy6501 27 EKVPLDLAKLLMQGRQAKGWSQKDLAT-KINEKPQIVNDYEGGRGI------PNQAIIGKMERALGIRL 88 (174)
Q Consensus 27 ~~~~~~ig~~ik~~R~~~gltq~eLA~-~igvs~~~is~~E~G~~~------P~~~~l~~la~~L~v~~ 88 (174)
..+..+|..+|++-.+..++||+-||+ -+|.++.++|.+-+.-.- +--+.+.++-..|+.+.
T Consensus 20 ~~vt~~I~~~Ik~eLk~~~IsQ~~FA~~VL~rsQGtLS~LLr~PkdPW~~LksGRE~fiRM~NWL~Lpe 88 (141)
T 1yse_A 20 TEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPE 88 (141)
T ss_dssp CSCCTHHHHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHHHHCCCGGGCCHHHHHHHHHHHHHHHSCH
T ss_pred ccchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHcCCCCcHHHHHHHHHHHHHHHHHhcCCH
Confidence 345678999999999999999999999 568999999998764432 12344455555555553
No 300
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=87.00 E-value=2.1 Score=32.95 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~ 65 (174)
..+|..+||+.+|+|+++++++
T Consensus 18 ~~~~~~~la~~~~~s~~~l~r~ 39 (292)
T 1d5y_A 18 QPLSLDNVAAKAGYSKWHLQRM 39 (292)
T ss_dssp SSCCCHHHHTTTSSCHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 4799999999999999999998
No 301
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=86.99 E-value=0.4 Score=33.63 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 36 LLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 36 ~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
-|..+.+...+|..|||+.+|+|++++++.
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s~~tv~~~ 37 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIPKATLSYR 37 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 345555566799999999999999998875
No 302
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=86.84 E-value=0.67 Score=32.62 Aligned_cols=31 Identities=3% Similarity=0.048 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-|..+.+...+|..+||+.+|+|++++++.
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 41 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGLAESTIHER 41 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 3455666677899999999999999998874
No 303
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=86.77 E-value=0.83 Score=30.12 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=21.5
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
..++|..|||+.+|+|+++|++.-
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L 60 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQL 60 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHH
Confidence 577999999999999999998864
No 304
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=86.68 E-value=0.85 Score=31.62 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=24.3
Q ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 41 RQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 41 R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
+.-.|+|.+|+|+.+|+|.++|.+.-.
T Consensus 120 ~~~~g~s~~EIA~~lgis~~tV~~~~~ 146 (164)
T 3mzy_A 120 YLIRGYSYREIATILSKNLKSIDNTIQ 146 (164)
T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 567999999999999999999998763
No 305
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=86.67 E-value=0.83 Score=33.89 Aligned_cols=29 Identities=14% Similarity=0.068 Sum_probs=25.4
Q ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 39 QGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 39 ~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
.+|-..|+|++|+|+.+|+|.++|+++..
T Consensus 197 ~l~~~~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 197 QLIFYEELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp HHHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 35567899999999999999999998874
No 306
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=86.59 E-value=0.52 Score=32.12 Aligned_cols=30 Identities=10% Similarity=-0.107 Sum_probs=24.4
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
|..+....++|..|||+.+|+|+++||+.-
T Consensus 48 L~~L~~~~~~s~~eLa~~l~is~stvs~~L 77 (122)
T 1u2w_A 48 TYALCQDEELCVCDIANILGVTIANASHHL 77 (122)
T ss_dssp HHHHHHSSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 444444568999999999999999999764
No 307
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=86.46 E-value=0.53 Score=32.28 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHH-HHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGR-QAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R-~~~gltq~eLA~~igvs~~~is~~E 66 (174)
+...-..-+..+. ...++|+.|||+.+|++++++++.-
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l 62 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSL 62 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3333344444443 2468999999999999999988753
No 308
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=86.43 E-value=0.97 Score=31.46 Aligned_cols=34 Identities=9% Similarity=-0.074 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 33 ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
-..-|..+...-++|+.+||+.+++++++|++.-
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 79 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVV 79 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3445666666779999999999999999998753
No 309
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=86.43 E-value=0.51 Score=34.21 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
.+||++||..+|+|+.+||+.-
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l 185 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVL 185 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHH
Confidence 4899999999999999999864
No 310
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=86.41 E-value=1.1 Score=29.88 Aligned_cols=29 Identities=28% Similarity=0.189 Sum_probs=23.4
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
|..+.+ ..+|+.++|+.+|+|+++|++.-
T Consensus 38 l~~L~~-~~~s~~ela~~l~is~stvsr~l 66 (119)
T 2lkp_A 38 LTQLRN-GPLPVTDLAEAIGMEQSAVSHQL 66 (119)
T ss_dssp HHHHHH-CCCCHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 334444 67999999999999999999764
No 311
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=86.40 E-value=0.5 Score=33.18 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 36 LLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 36 ~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
-|..+...-++|+.+||+.+++++++|+++-
T Consensus 55 vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 85 (159)
T 3s2w_A 55 FLMRLYREDGINQESLSDYLKIDKGTTARAI 85 (159)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3445555677899999999999998888764
No 312
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=86.31 E-value=0.81 Score=30.21 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=23.8
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
|..+ ...++|..|||+.+|+|+++|++.-
T Consensus 27 L~~L-~~~~~~~~ela~~l~is~~tv~~~l 55 (114)
T 2oqg_A 27 LTEL-GRADQSASSLATRLPVSRQAIAKHL 55 (114)
T ss_dssp HHHH-HHSCBCHHHHHHHSSSCHHHHHHHH
T ss_pred HHHH-HcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3344 5678999999999999999998763
No 313
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=86.31 E-value=0.36 Score=30.57 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhCCChhHHHHHhc
Q psy6501 135 GWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 135 glsq~ela~~lg~~~s~i~~~E~ 157 (174)
.++..++|+.+|++++++..||.
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHH
Confidence 47889999999999999999998
No 314
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=86.27 E-value=0.71 Score=33.46 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-|..+.....+|..|||+.+|+|++++++.
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~ 51 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKKPESTIHFR 51 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 3466667777899999999999999998875
No 315
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=86.27 E-value=0.92 Score=32.63 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=26.2
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
+-.++.-.|+|.+|+|+.+|+|.++|.+.-.
T Consensus 148 vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ 178 (194)
T 1or7_A 148 AITLRELDGLSYEEIAAIMDCPVGTVRSRIF 178 (194)
T ss_dssp HHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HhHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3345667899999999999999999998763
No 316
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=86.20 E-value=1.3 Score=26.39 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
-..|....+.. .++.+.|+.+|||++|+.+.-+
T Consensus 23 r~~I~~aL~~~-gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 23 AQVLKLFYAEY-PSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp HHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHh-CCHHHHHHHhCCCHHHHHHHHH
Confidence 44566666667 6999999999999999987654
No 317
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=86.10 E-value=0.8 Score=29.91 Aligned_cols=28 Identities=7% Similarity=-0.006 Sum_probs=23.2
Q ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 39 QGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 39 ~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.+....++|..|+|+.+|+|++++|+--
T Consensus 35 ~l~~~~~~~~~ela~~l~is~stvs~hL 62 (99)
T 2zkz_A 35 ELYKHKALNVTQIIQILKLPQSTVSQHL 62 (99)
T ss_dssp HHHHHSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3345567999999999999999999753
No 318
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=86.05 E-value=0.84 Score=31.93 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.-|..+...-++|+.+||+.+|+++++|+..-
T Consensus 53 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 84 (162)
T 2fa5_A 53 RVITILALYPGSSASEVSDRTAMDKVAVSRAV 84 (162)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 34555555668899999999999998887753
No 319
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=86.00 E-value=0.92 Score=31.43 Aligned_cols=33 Identities=3% Similarity=0.032 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..-|..+...-++|+.+||+.+++++++|+..-
T Consensus 50 ~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l 82 (153)
T 2pex_A 50 YLVMLVLWETDERSVSEIGERLYLDSATLTPLL 82 (153)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHH
Confidence 344555556677888999999999998888653
No 320
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=85.87 E-value=1.3 Score=34.24 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..--.-|..+.+..++|+.|||+.+|++++|+++.-
T Consensus 152 ~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L 187 (244)
T 2wte_A 152 REEMKLLNVLYETKGTGITELAKMLDKSEKTLINKI 187 (244)
T ss_dssp HHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 334455666667789999999999999999999874
No 321
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=85.84 E-value=0.56 Score=34.07 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=20.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
.+||++||..+|+|+.+||+.-
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l 188 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRIL 188 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHHHHH
Confidence 5899999999999999999864
No 322
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=85.83 E-value=1.3 Score=32.62 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHcC--CCHHHHHHHhCCCHHHHHHH
Q psy6501 30 PLDLAKLLMQGRQAKG--WSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~g--ltq~eLA~~igvs~~~is~~ 65 (174)
...+-+.|.+...+.| .|+.|||+.+|+|+++++++
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~ 44 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLH 44 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHH
Confidence 3456677777766666 79999999999999888774
No 323
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=85.74 E-value=1.5 Score=29.02 Aligned_cols=33 Identities=15% Similarity=-0.113 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
-..|..+.+..+..+.+.|+.+|||++++.+.-
T Consensus 60 r~~I~~aL~~~~gn~~~AA~~LGIsR~TL~rkL 92 (98)
T 1eto_A 60 QPLLDMVMQYTLGNQTRAALMMGINRGTLRKKL 92 (98)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHH
Confidence 456778888899999999999999999998754
No 324
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=85.73 E-value=0.91 Score=31.81 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=18.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
++||.+||+.+++++++|++.-
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v 73 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNL 73 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHH
Confidence 4899999999999999998764
No 325
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=85.67 E-value=0.74 Score=31.46 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=24.9
Q ss_pred HHHHHH-HHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQG-RQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~-R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-|..+ ...-++|+.+||+.+|+++++|+..
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~ 72 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARL 72 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHH
Confidence 345555 5567899999999999999999876
No 326
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=85.66 E-value=0.8 Score=31.42 Aligned_cols=39 Identities=5% Similarity=0.008 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 28 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 28 ~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.+...-..-|..+...-++|+.+||+.+++++++|+..-
T Consensus 37 ~l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l 75 (147)
T 1z91_A 37 NITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPML 75 (147)
T ss_dssp CCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHH
Confidence 344444455666666778999999999999999998754
No 327
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=85.61 E-value=1.3 Score=32.54 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.3
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
..+||++||..+|+|+.+||+.-
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l 188 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLL 188 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHH
Confidence 35899999999999999999764
No 328
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=85.60 E-value=0.71 Score=33.90 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=23.1
Q ss_pred HHHHHHH-cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 37 LMQGRQA-KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 37 ik~~R~~-~gltq~eLA~~igvs~~~is~~E 66 (174)
|..+++. ..+|.+|||+.+|||++||.+.-
T Consensus 27 l~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi 57 (187)
T 1j5y_A 27 VRILERSKEPVSGAQLAEELSVSRQVIVQDI 57 (187)
T ss_dssp HHHHHHCSSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3444443 34999999999999999998753
No 329
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=85.58 E-value=0.32 Score=39.70 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.-|+.+| ...+|..|||+.+|+|++||+++-
T Consensus 24 ~il~~l~-~~~~sr~~la~~~gls~~tv~~~v 54 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELGLTKTTVGEIA 54 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3478889 899999999999999999999863
No 330
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=85.58 E-value=0.73 Score=31.50 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.-|..+...-++|+.+||+.+|+++++|+..-
T Consensus 33 ~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l 64 (144)
T 1lj9_A 33 LYLVRVCENPGIIQEKIAELIKVDRTTAARAI 64 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHH
Confidence 34555556678999999999999999998753
No 331
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=85.57 E-value=0.85 Score=31.48 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.-..-|..+...-++|+.+||+.+|+++++|++.-
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l 75 (152)
T 3bj6_A 41 GQRAILEGLSLTPGATAPQLGAALQMKRQYISRIL 75 (152)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 33444555556668999999999999999888753
No 332
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=85.50 E-value=1.4 Score=32.05 Aligned_cols=22 Identities=5% Similarity=0.237 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
.+||++||..+|+|+.+||+.-
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l 190 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRML 190 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 7899999999999999998874
No 333
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=85.47 E-value=5.6 Score=26.46 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=21.8
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHcCC
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEGGR 69 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~G~ 69 (174)
..+|..+||+.+|+|++++++.=+-.
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 37999999999999999998875433
No 334
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=85.44 E-value=0.6 Score=33.89 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
.+||++||..+|+|+.+||+.-
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l 167 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVI 167 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHH
Confidence 3899999999999999998764
No 335
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=85.08 E-value=2 Score=31.52 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHH
Q psy6501 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKM 170 (174)
Q Consensus 124 ~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i 170 (174)
...++.+.. .|+|+.++|+++|.++++|+++-+=-..|+ .++..+
T Consensus 42 A~a~~~L~~-~G~t~eeiA~~lG~s~s~V~~~LrLl~Lp~-~v~~~v 86 (178)
T 1r71_A 42 ADFIGRELA-KGKKKGDIAKEIGKSPAFITQHVTLLDLPE-KIADAF 86 (178)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHGGGSCCH-HHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHcCCH-HHHHHH
Confidence 334443333 499999999999999999999988666555 444444
No 336
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=85.04 E-value=2 Score=29.13 Aligned_cols=36 Identities=3% Similarity=0.090 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC--CCHHHHHHHHc
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKIN--EKPQIVNDYEG 67 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~ig--vs~~~is~~E~ 67 (174)
..-..|..+....++|..++|..+| +|.+||.+|-.
T Consensus 64 ~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~ 101 (141)
T 1u78_A 64 RDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIK 101 (141)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHH
Confidence 3345555556677899999999998 79999999864
No 337
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=84.95 E-value=1.1 Score=30.61 Aligned_cols=32 Identities=9% Similarity=-0.084 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..-|..+. ..++|+.+||+.+|+++++|+..-
T Consensus 40 ~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l 71 (146)
T 2gxg_A 40 FLVLRATS-DGPKTMAYLANRYFVTQSAITASV 71 (146)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHH
Confidence 34455555 778999999999999999888753
No 338
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=84.88 E-value=0.71 Score=32.46 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=33.9
Q ss_pred HcCCCHHHHHHHhCC-CHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 43 AKGWSQKDLATKINE-KPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 43 ~~gltq~eLA~~igv-s~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
..|.|..++|...|| |.+||.+|-+-. .+....+.++-....+.++
T Consensus 26 ~~G~sl~~i~~~~~~ps~~T~~~W~~~~----~ef~e~~~~Ar~~~~~~~~ 72 (140)
T 4dyq_A 26 SSGESLLKVCKRPGMPDKSTVFRWLAKH----EDFRDKYAKATEARADSIF 72 (140)
T ss_dssp HTTCCHHHHHTSTTCCCHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHH
T ss_pred HCCCcHHHHHhcCCCCCHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHH
Confidence 489999999999999 999999998643 3455555555555554443
No 339
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=84.79 E-value=0.9 Score=37.60 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..-|+.+|....+|..|||+.+|+|++||+++-
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v 74 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKIT 74 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHH
Confidence 456888999999999999999999999999863
No 340
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=84.72 E-value=0.82 Score=32.49 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..-|..+...-++|+.+||+.+|+++++|++.-
T Consensus 48 ~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l 80 (168)
T 2nyx_A 48 FRTLVILSNHGPINLATLATLLGVQPSATGRMV 80 (168)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHH
Confidence 344555666678999999999999999998763
No 341
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=84.70 E-value=0.82 Score=32.15 Aligned_cols=32 Identities=16% Similarity=-0.047 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.-|..+...-++|+.+||+.+|+++++|++.-
T Consensus 57 ~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l 88 (161)
T 3e6m_A 57 RLLSSLSAYGELTVGQLATLGVMEQSTTSRTV 88 (161)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 34555666678899999999999999888753
No 342
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=84.61 E-value=10 Score=30.58 Aligned_cols=48 Identities=8% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCccccccc
Q psy6501 31 LDLAKLLMQGRQ--AKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNA 92 (174)
Q Consensus 31 ~~ig~~ik~~R~--~~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~ 92 (174)
..+...+..+.. ...+|.+++|+.+|+|++++++. +.+.+|+++..+.
T Consensus 305 ~~~~~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~--------------f~~~~g~s~~~~~ 354 (412)
T 4fe7_A 305 PAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKR--------------FKEEVGETIHAMI 354 (412)
T ss_dssp HHHHHHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHHH--------------HHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHCcCHHHHHHH--------------HHHHHCcCHHHHH
Confidence 445555555555 36899999999999999999876 4556666655443
No 343
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=84.61 E-value=0.69 Score=33.70 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=20.3
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
..+||+++|..+|+|+.+||+.-
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l 184 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVL 184 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Confidence 34799999999999999999864
No 344
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=84.58 E-value=1.4 Score=30.39 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 34 AKLLMQGRQA-KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 34 g~~ik~~R~~-~gltq~eLA~~igvs~~~is~~ 65 (174)
..-|..+... .++|+.+||+.+++++++|++.
T Consensus 42 ~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~ 74 (150)
T 3fm5_A 42 YSVLVLACEQAEGVNQRGVAATMGLDPSQIVGL 74 (150)
T ss_dssp HHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHH
Confidence 3444455433 4689999999999999999885
No 345
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=84.54 E-value=0.69 Score=34.08 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=19.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q psy6501 46 WSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E 66 (174)
+||++||..+|+|+.+||+.-
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l 208 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVL 208 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHH
Confidence 799999999999999999875
No 346
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=84.52 E-value=1.3 Score=34.37 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=34.8
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH------------cCCCCCCHHHHHHH-----HHHhCcccccc
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE------------GGRGIPNQAIIGKM-----ERALGIRLRVN 91 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E------------~G~~~P~~~~l~~l-----a~~L~v~~~~l 91 (174)
..+|..|+|+.+|||..||.-|| +|.|.-+...+..| .+.+|+++..+
T Consensus 2 ~~~tI~evA~~~gvs~~TLRyYe~~GLL~p~~~~~~GyR~Y~~~dl~~L~~I~~lr~~G~sL~eI 66 (249)
T 3qao_A 2 NAMQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKI 66 (249)
T ss_dssp CCBCHHHHHHHHCCCHHHHHHHHHTTSSCCEECTTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHCCCCCCceECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 35899999999999999999999 44455555555443 34567776654
No 347
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=84.45 E-value=1.8 Score=30.59 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=28.9
Q ss_pred cccccchHHHHHHHHHHHHHcC---CCHHHHHHHhCCCHHHHHHHH
Q psy6501 24 LKHEKVPLDLAKLLMQGRQAKG---WSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 24 ~~~~~~~~~ig~~ik~~R~~~g---ltq~eLA~~igvs~~~is~~E 66 (174)
|+++.....|-+.-..+-.++| +|..++|+++|||++++.+|=
T Consensus 4 ~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 49 (206)
T 3dew_A 4 MTRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHF 49 (206)
T ss_dssp ----CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHHc
Confidence 3444444455555555555555 799999999999999999883
No 348
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=84.41 E-value=0.71 Score=34.05 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
.+||++||..+|+|+.+||+.-
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l 198 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKAL 198 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHH
Confidence 4899999999999999999864
No 349
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=84.40 E-value=0.99 Score=32.72 Aligned_cols=31 Identities=3% Similarity=0.048 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-|..+.+.-.+|..|||+.+|+|++++++.
T Consensus 31 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~r 61 (171)
T 2e1c_A 31 KIIKILQNDGKAPLREISKITGLAESTIHER 61 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4566666677899999999999999998764
No 350
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=84.35 E-value=1.2 Score=30.51 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..-|..+... ++|+.+||+.+|+++++|+..-
T Consensus 41 ~~iL~~l~~~-~~t~~eLa~~l~~s~~tvs~~l 72 (146)
T 3tgn_A 41 EHILMLLSEE-SLTNSELARRLNVSQAAVTKAI 72 (146)
T ss_dssp HHHHHHHTTC-CCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHCCCHHHHHHHH
Confidence 3444445444 4999999999999999999753
No 351
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=84.34 E-value=0.69 Score=31.30 Aligned_cols=38 Identities=8% Similarity=-0.010 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
+...=..-|..+....++|+.+||+.+|+++++|+..-
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l 68 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMI 68 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHH
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHH
Confidence 33334445556666678999999999999998887653
No 352
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=84.34 E-value=0.72 Score=33.98 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=19.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q psy6501 46 WSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E 66 (174)
+||++||..+|+|+.+||+.-
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l 184 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTAL 184 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHH
Confidence 899999999999999998764
No 353
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=84.34 E-value=1 Score=31.10 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..-|..+...-++|+.+||+.+|+++++|+..-
T Consensus 40 ~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l 72 (155)
T 1s3j_A 40 LFVLASLKKHGSLKVSEIAERMEVKPSAVTLMA 72 (155)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 344555566678999999999999999998764
No 354
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=84.26 E-value=0.94 Score=31.38 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-|..+...-++|+.+||+.+|+++++|++.
T Consensus 45 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~ 75 (154)
T 2qww_A 45 AMINVIYSTPGISVADLTKRLIITGSSAAAN 75 (154)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
Confidence 4455555666789999999999999988875
No 355
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=84.23 E-value=0.39 Score=30.40 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..+-..|..+......|-.++|+++|++++.|+++-
T Consensus 15 ~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~L 50 (75)
T 1sfu_A 15 SLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQL 50 (75)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHH
Confidence 344555666666666899999999999999888753
No 356
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=84.21 E-value=0.57 Score=33.84 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=19.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
.+||++||..+|+|+.+||+.-
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l 160 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVL 160 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 3899999999999999998764
No 357
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=84.21 E-value=0.72 Score=34.10 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=20.5
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
..+||++||..+|+|+.+||+.-
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l 196 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVL 196 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCcHHHHHHHH
Confidence 35899999999999999999864
No 358
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=84.18 E-value=0.48 Score=32.58 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..-|..+...-++|+.+||+.+++++++|++.-
T Consensus 39 ~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 71 (140)
T 3hsr_A 39 YIVLMAIENDEKLNIKKLGERVFLDSGTLTPLL 71 (140)
T ss_dssp HHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHH
Confidence 344555555668899999999999999888753
No 359
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=84.13 E-value=0.76 Score=31.74 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=18.4
Q ss_pred HHHHHHHHHHH--cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 33 LAKLLMQGRQA--KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 33 ig~~ik~~R~~--~gltq~eLA~~igvs~~~is~~ 65 (174)
-..-|..+... -++|+.+||+.+++++++|++.
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~ 77 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGRRGASITSM 77 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC------CHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHH
Confidence 34455555555 6888888888888888877765
No 360
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=83.86 E-value=1.8 Score=31.37 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCC
Q psy6501 36 LLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR 69 (174)
Q Consensus 36 ~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~ 69 (174)
.|..+. ..|+|..++|+.+|+|++||.+|-+..
T Consensus 150 ~i~~~~-~~G~s~~~Ia~~l~is~~tv~r~l~~~ 182 (183)
T 1gdt_A 150 AVLNMW-QQGLGASHISKTMNIARSTVYKVINES 182 (183)
T ss_dssp HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHhhc
Confidence 444444 479999999999999999999986543
No 361
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=83.85 E-value=0.71 Score=31.43 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=22.8
Q ss_pred HHHHHHHHHH--cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 34 AKLLMQGRQA--KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 34 g~~ik~~R~~--~gltq~eLA~~igvs~~~is~~ 65 (174)
..-|..+... .++|+.+||+.+++++++|++.
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~ 73 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIINHLNYKQPQVVKA 73 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHH
Confidence 3445555555 6788888888888888888764
No 362
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=83.74 E-value=1 Score=32.19 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=22.1
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~ 67 (174)
.-+|..|+|+.+|||..||..||.
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~ 33 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYES 33 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 458999999999999999999984
No 363
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=83.72 E-value=2.4 Score=28.04 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 122 ~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
+....+.... ..|++..++|+.+|+++++|.+|-.
T Consensus 21 ~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 21 NIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp HHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3334444443 4799999999999999999988753
No 364
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=83.68 E-value=1 Score=31.53 Aligned_cols=33 Identities=9% Similarity=-0.053 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
..-|..+...-++|+.+||+.+|+++++|++.-
T Consensus 55 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 87 (162)
T 3cjn_A 55 MRALAILSAKDGLPIGTLGIFAVVEQSTLSRAL 87 (162)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHH
Confidence 344555566678899999999999999888754
No 365
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=83.68 E-value=1.4 Score=27.79 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHH---cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 32 DLAKLLMQGRQA---KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 32 ~ig~~ik~~R~~---~gltq~eLA~~igvs~~~is~~E 66 (174)
.|-+.|+..-++ .-.|..|||+.+|+|.+||.+.-
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 344445444333 45689999999999999987753
No 366
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=83.53 E-value=0.8 Score=34.08 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
.+||++||..+|+|+.+||+.-
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l 207 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTL 207 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHHH
Confidence 4899999999999999999764
No 367
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=83.46 E-value=0.86 Score=31.67 Aligned_cols=32 Identities=9% Similarity=-0.084 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.-|..+...-++|+.+||+.+|+++++|+..-
T Consensus 47 ~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l 78 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAKLSLMEQSRMTRIV 78 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 34455555567888889998888888887653
No 368
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=83.41 E-value=2.2 Score=29.77 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=27.4
Q ss_pred hHHHHHHHHHH-HHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 30 PLDLAKLLMQG-RQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 30 ~~~ig~~ik~~-R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
...+-..|..+ ....++|+.+||+.+|+|+++|+..-
T Consensus 38 ~~~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l 75 (155)
T 2h09_A 38 IDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKML 75 (155)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHH
Confidence 33444445433 44578999999999999999998764
No 369
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=83.38 E-value=1.6 Score=32.44 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=29.8
Q ss_pred cccchHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 26 HEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 26 ~~~~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
+-.+...-...|..+...-++|+.+||+.+++++++|++.-
T Consensus 43 ~~gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l 83 (207)
T 2fxa_A 43 PYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFS 83 (207)
T ss_dssp GGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 33344444455666666678999999999999999988763
No 370
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=83.33 E-value=0.75 Score=32.90 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 36 LLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 36 ~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
-|+.+.+...+|..+||+.+|+|++++++-
T Consensus 8 il~~L~~~~~~s~~~la~~lg~s~~tv~~r 37 (162)
T 3i4p_A 8 ILRILQEDSTLAVADLAKKVGLSTTPCWRR 37 (162)
T ss_dssp HHHHHTTCSCSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCcCHHHHHHH
Confidence 456677778899999999999999988753
No 371
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=83.29 E-value=0.64 Score=34.19 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=20.4
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
..+||++||..+|+|+.+||+.-
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l 199 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIM 199 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHH
Confidence 35799999999999999999874
No 372
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=83.10 E-value=0.81 Score=37.49 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
..-|+.+|+...+|..|||+.+|+|++||+++
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~ 50 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKI 50 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHH
Confidence 44678888889999999999999999999986
No 373
>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, Pro structure initiative; 1.70A {Shewanella oneidensis} SCOP: a.35.1.6
Probab=83.05 E-value=4.3 Score=28.25 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHH
Q psy6501 126 LLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIG 168 (174)
Q Consensus 126 ~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~ 168 (174)
.|...|...|++..++++..+.+..-+-.||.|....+.-.-.
T Consensus 11 e~~ylr~slgl~~aqv~~l~k~se~dv~aweage~~~~~laqk 53 (166)
T 2ox6_A 11 EMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPELAQK 53 (166)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHhccCHHHhhhhhhcCCcCcchHHh
Confidence 4667799999999999999999999999999998876654433
No 374
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=83.01 E-value=2.1 Score=29.20 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.2
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
..++|+.+||+.+|+++++|++.-
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l 52 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEV 52 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCChHHHHHHH
Confidence 468999999999999999998753
No 375
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=82.96 E-value=0.52 Score=30.50 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=20.1
Q ss_pred cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~ 65 (174)
..+|..|||+.+|+|+++|++.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~ 56 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQH 56 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 6889999999999999999864
No 376
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=82.88 E-value=0.36 Score=34.06 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHH----cCCCHHHHHH----Hh--CCCHHHHHHHHcC
Q psy6501 30 PLDLAKLLMQGRQA----KGWSQKDLAT----KI--NEKPQIVNDYEGG 68 (174)
Q Consensus 30 ~~~ig~~ik~~R~~----~gltq~eLA~----~i--gvs~~~is~~E~G 68 (174)
...+.+++.-+... -++||.+||+ .. +++++|||+|-+.
T Consensus 11 ~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 34455666666655 5799999999 88 8999999999764
No 377
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=82.82 E-value=1.4 Score=29.02 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=19.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~ 65 (174)
.+|..+||+.+|+|+++|++-
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~ 53 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKK 53 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH
Confidence 699999999999999999865
No 378
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=82.77 E-value=0.86 Score=33.69 Aligned_cols=23 Identities=22% Similarity=-0.061 Sum_probs=20.4
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
..+||++||..+|+|+.+||+.-
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l 201 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTL 201 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHH
Confidence 45899999999999999999764
No 379
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=82.74 E-value=1.3 Score=31.95 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCC------ChhHHHHHhcCC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINE------KPQIVNDYEGGR 159 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~------~~s~i~~~E~G~ 159 (174)
..++..++..|...|++|.+++..+|. +.++|.+.|.-.
T Consensus 10 ~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~ 54 (160)
T 1e3o_C 10 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN 54 (160)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccC
Confidence 567788999999999999999999998 888999998743
No 380
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=82.64 E-value=1.5 Score=31.10 Aligned_cols=37 Identities=19% Similarity=-0.006 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHH-HcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQ-AKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 29 ~~~~ig~~ik~~R~-~~gltq~eLA~~igvs~~~is~~ 65 (174)
+...=...|..+.. .-++|+.+||+.+++++++|++.
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~ 88 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRT 88 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHH
Confidence 33333445555555 45789999999999999988876
No 381
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=82.57 E-value=0.91 Score=34.09 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.6
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
..+||++||..+|+|+.+||+.-
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l 214 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLL 214 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHHHHH
Confidence 46899999999999999999864
No 382
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=82.36 E-value=2 Score=25.74 Aligned_cols=25 Identities=4% Similarity=0.258 Sum_probs=22.1
Q ss_pred hcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 133 AKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 133 ~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
..|+|.+++|+.+|+++++|..+..
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3689999999999999999988754
No 383
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=82.26 E-value=0.72 Score=34.23 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=20.4
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
..+||++||..+|+|+.+||+.-
T Consensus 177 l~~t~~~iA~~lg~sr~tvsR~l 199 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLSRAF 199 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHH
Confidence 35789999999999999999875
No 384
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=82.21 E-value=2.7 Score=24.85 Aligned_cols=28 Identities=18% Similarity=-0.039 Sum_probs=23.6
Q ss_pred HHHHhcCCCHHHHHHHhCCChhHHHHHh
Q psy6501 129 QGRQAKGWSQKDLATKINEKPQIVNDYE 156 (174)
Q Consensus 129 ~~R~~~glsq~ela~~lg~~~s~i~~~E 156 (174)
..+-..|+|.+++|+.+|++++++..+-
T Consensus 25 ~l~~~~g~s~~eIA~~lgis~~tv~~~~ 52 (70)
T 2o8x_A 25 LLTQLLGLSYADAAAVCGCPVGTIRSRV 52 (70)
T ss_dssp HHHHTSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 4455789999999999999999987654
No 385
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=82.12 E-value=0.96 Score=34.00 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=20.3
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
..+||++||..+|+|+.+||+.-
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l 198 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVL 198 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHH
Confidence 35799999999999999998864
No 386
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=82.04 E-value=1.5 Score=31.92 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=26.0
Q ss_pred HHHHHHHHH--HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 34 AKLLMQGRQ--AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 34 g~~ik~~R~--~~gltq~eLA~~igvs~~~is~~E 66 (174)
...|..+.. ..++|+.+||+.+|+++++|+..-
T Consensus 44 ~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l 78 (189)
T 3nqo_A 44 YMTILSILHLPEEETTLNNIARKMGTSKQNINRLV 78 (189)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 344555555 568999999999999999999863
No 387
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=81.76 E-value=2.1 Score=29.98 Aligned_cols=31 Identities=19% Similarity=-0.011 Sum_probs=23.0
Q ss_pred HHHHHH-HHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 36 LLMQGR-QAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 36 ~ik~~R-~~~gltq~eLA~~igvs~~~is~~E 66 (174)
.|..+- ..-+.+|.+||+.+|+++++|++.-
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v 67 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGIEQPSLVRTL 67 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHH
Confidence 344443 3467899999999999999988763
No 388
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=81.72 E-value=1.4 Score=26.85 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.9
Q ss_pred CHHHHHHHhCCChhHHHHHhcCC
Q psy6501 137 SQKDLATKINEKPQIVNDYEGGR 159 (174)
Q Consensus 137 sq~ela~~lg~~~s~i~~~E~G~ 159 (174)
++.++|+.+|++++.|+.|.++.
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir~~ 37 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIHAG 37 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHhC
Confidence 99999999999999999997643
No 389
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=81.62 E-value=0.69 Score=29.91 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCCHHHH----HHHhCCCHHHHHHH
Q psy6501 36 LLMQGRQAKGWSQKDL----ATKINEKPQIVNDY 65 (174)
Q Consensus 36 ~ik~~R~~~gltq~eL----A~~igvs~~~is~~ 65 (174)
-|..+...-++|+.+| |+.+++++++|++.
T Consensus 13 iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~ 46 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDA 46 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHH
Confidence 3444445578999999 88899999999875
No 390
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=81.49 E-value=2.6 Score=26.86 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 127 LMQGRQAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 127 i~~~R~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
+-.++-..|+|.+++|+.+|++.++|..+-+
T Consensus 45 vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 45 VIQRSYYRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp HHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3355667899999999999999999977643
No 391
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=81.44 E-value=2 Score=24.88 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=22.3
Q ss_pred HhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 132 QAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 132 ~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
-..|+|.+++|+.+|+++++|..+-+
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 36899999999999999999887643
No 392
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=81.38 E-value=1.1 Score=29.71 Aligned_cols=24 Identities=8% Similarity=-0.048 Sum_probs=21.4
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
..++|..|||+.+|+|+++|++.-
T Consensus 36 ~~~~s~~eLa~~lgis~stvs~~L 59 (108)
T 2kko_A 36 QGERAVEAIATATGMNLTTASANL 59 (108)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHH
Confidence 367899999999999999999864
No 393
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=81.36 E-value=1.2 Score=31.00 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=19.5
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
-++|+.+||+.+++++++|++.-
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~v 72 (147)
T 4b8x_A 50 GELPMSKIGERLMVHPTSVTNTV 72 (147)
T ss_dssp GEEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHH
Confidence 35899999999999999988773
No 394
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=81.24 E-value=1.1 Score=34.15 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=20.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
.+||++||..+|+|+.+||+.-
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l 238 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRIL 238 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 5799999999999999999874
No 395
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=81.12 E-value=3.1 Score=28.81 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
..+....|.... ..|++..++|+.+|+++++|.+|-.
T Consensus 34 s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 34 PDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp CHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444444444 4799999999999999999988853
No 396
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=81.04 E-value=14 Score=27.99 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=18.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 45 GWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E~ 67 (174)
.+|.+++|+.+|+|++++++.=+
T Consensus 185 ~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 185 NWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 67888888888888888877643
No 397
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=80.99 E-value=2.6 Score=32.09 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhcCCCCCCHHHHHHH
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKM 170 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~G~~~P~~~~l~~i 170 (174)
.+....+..+. ..|+|++++|+.+|.++++|+++-.--..|+ ++...+
T Consensus 121 ~E~a~~~~~l~-~~g~t~~~iA~~lG~s~~~V~~~l~l~~l~~-~v~~~l 168 (230)
T 1vz0_A 121 VEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRLLQLPP-EALEAL 168 (230)
T ss_dssp HHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHGGGSCH-HHHHHH
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHcCCH-HHHHHH
Confidence 33344454444 7899999999999999999999887655554 444444
No 398
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=80.98 E-value=1.5 Score=27.86 Aligned_cols=32 Identities=19% Similarity=0.022 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHH-HHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQ-IVNDY 65 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~-~is~~ 65 (174)
-.-+..+...-+.|..+||+.+|++.. +|++-
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~h 46 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGLTKARDINAV 46 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHH
Confidence 334455666678999999999999998 77653
No 399
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=80.94 E-value=3.8 Score=24.50 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 122 ~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
.-...+... ..|++.+++|+.+|++++++..+-.
T Consensus 15 ~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 15 REREVFELL--VQDKTTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp HHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 333444432 7899999999999999998876543
No 400
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=80.81 E-value=1.8 Score=36.33 Aligned_cols=30 Identities=7% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHHH----cCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 38 MQGRQA----KGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 38 k~~R~~----~gltq~eLA~~igvs~~~is~~E~ 67 (174)
-.+|-. .++|++|+|+.+|||+.+|.+++.
T Consensus 384 I~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~ 417 (438)
T 1l9z_H 384 LKLRKGLIDGREHTLEEVGAYFGVTRERIRQIEN 417 (438)
T ss_pred HHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 345555 789999999999999999999985
No 401
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=80.53 E-value=3.7 Score=30.39 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCC
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGI 71 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~ 71 (174)
..|..+. ..|+|..++|+.+|+|++|+.+|-+....
T Consensus 166 ~~i~~~~-~~G~s~~~Ia~~l~is~~tv~r~l~~~~~ 201 (209)
T 2r0q_C 166 HRVVEML-EEGQAISKIAKEVNITRQTVYRIKHDNGL 201 (209)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHTTCC-
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHhcccc
Confidence 3444444 37999999999999999999999875543
No 402
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=80.51 E-value=0.33 Score=39.27 Aligned_cols=35 Identities=6% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 33 ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
-..-|..+....++||+|||+.+|+|++||++.-+
T Consensus 22 ~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~ 56 (345)
T 2o0m_A 22 RFQILRNIYWMQPIGRRSLSETMGITERVLRTETD 56 (345)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34556677788899999999999999999998753
No 403
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=80.46 E-value=2.3 Score=28.40 Aligned_cols=30 Identities=7% Similarity=-0.005 Sum_probs=26.0
Q ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 38 MQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 38 k~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
-.....-++|+.|.|++.+||.++|.+|++
T Consensus 43 V~~v~~g~lS~~EAa~ry~Is~~ei~~W~r 72 (101)
T 2oa4_A 43 VRGVIYGLITLAEAKQTYGLSDEEFNSWVS 72 (101)
T ss_dssp HHHHHHTTCCHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 345566799999999999999999999984
No 404
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=80.45 E-value=2 Score=26.89 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=24.6
Q ss_pred HHHHHHHHhc---CCCHHHHHHHhCCChhHHHHH
Q psy6501 125 KLLMQGRQAK---GWSQKDLATKINEKPQIVNDY 155 (174)
Q Consensus 125 ~~i~~~R~~~---glsq~ela~~lg~~~s~i~~~ 155 (174)
..+...+... ++|..++|+++|++.++|.+.
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~ 51 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 51 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 4555556666 799999999999999988765
No 405
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=80.08 E-value=3.3 Score=25.08 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=21.8
Q ss_pred cCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 134 KGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 134 ~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
.|+|.+++|+.+|+++++|..+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 789999999999999999988654
No 406
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=80.07 E-value=1.6 Score=29.79 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
..-|..+...-+ |+.+||+.+|+++++|+..
T Consensus 40 ~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~ 70 (144)
T 3f3x_A 40 FSILKATSEEPR-SMVYLANRYFVTQSAITAA 70 (144)
T ss_dssp HHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHCCChhHHHHH
Confidence 344555555555 8888888888888888875
No 407
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=80.06 E-value=2.7 Score=26.50 Aligned_cols=31 Identities=6% Similarity=0.057 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHhCCChhHHHHH
Q psy6501 125 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 155 (174)
Q Consensus 125 ~~i~~~R~~~glsq~ela~~lg~~~s~i~~~ 155 (174)
.++...++....+..++|+.+++++.+|.+.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrd 36 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAM 36 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHH
Confidence 4455556667799999999999999988753
No 408
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=79.95 E-value=10 Score=27.66 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 119 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 119 ~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
++...... -.++-..|+|.+++|+.+|+++++|....+
T Consensus 188 L~~~~r~v-l~l~~~~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 188 LPEREKLV-IQLIFYEELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp SCHHHHHH-HHHHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHH-HHHHHhcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 33333333 345556899999999999999999987653
No 409
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=79.81 E-value=2.6 Score=27.68 Aligned_cols=46 Identities=2% Similarity=-0.034 Sum_probs=33.7
Q ss_pred hhcccccc---hHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 22 EELKHEKV---PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 22 ~~~~~~~~---~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
..++++++ ...+=..|-..-..-++|..|+|++.+||++.|..|..
T Consensus 23 ~~l~~~~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 23 ADLPPLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp TTSCCSSCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHH
T ss_pred hcCChHhhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 33455554 24444455555666789999999999999999999974
No 410
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=79.54 E-value=1.2 Score=31.42 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
+-.++.-.|+|.+|+|+.+|+|.++|...-
T Consensus 101 vl~L~~~~g~s~~EIA~~lgis~~tV~~~l 130 (157)
T 2lfw_A 101 ALLLTAMEGFSPEDAAYLIEVDTSEVETLV 130 (157)
T ss_dssp HHTTTSSSCCCHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 334556789999999999999999998764
No 411
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=79.49 E-value=4.5 Score=26.94 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHcCC-------CHHHHHHHhCCCHHHHHHH
Q psy6501 30 PLDLAKLLMQGRQAKGW-------SQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gl-------tq~eLA~~igvs~~~is~~ 65 (174)
...+.+.|+..-....+ |..+||+.+|||+++|..-
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~a 53 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKA 53 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 34556666665555444 8999999999999988764
No 412
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=79.43 E-value=4.1 Score=25.46 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
..-.+.+.. . ..|++.+++|+.+|++.++|..+-.
T Consensus 24 ~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l~ 58 (82)
T 1je8_A 24 PRERDILKL-I-AQGLPNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp HHHHHHHHH-H-TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 333444443 2 7899999999999999999876643
No 413
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=79.36 E-value=0.38 Score=34.63 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
...+||++||..+|+|+.+||++-+
T Consensus 166 ~~~~t~~~iA~~lG~sretlsR~l~ 190 (194)
T 3dn7_A 166 IQRVPQYLLASYLGFTPEYLSEIRK 190 (194)
T ss_dssp -------------------------
T ss_pred HHHCCHHHHHHHhCCCHHHHHHHHH
Confidence 3568999999999999999998754
No 414
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=79.02 E-value=2 Score=27.99 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHH------cCC-CHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQA------KGW-SQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~------~gl-tq~eLA~~igvs~~~is~~E 66 (174)
+...+.+.|+..-.. ..+ |..+||+.+|||+++|++--
T Consensus 12 ~~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al 56 (102)
T 1v4r_A 12 GYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRAL 56 (102)
T ss_dssp CHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 344566666554333 234 89999999999999998764
No 415
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=78.94 E-value=4.2 Score=26.20 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHh
Q psy6501 119 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 156 (174)
Q Consensus 119 ~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E 156 (174)
++..-.+.+.. . ..|+|.+++|+.+|++..+|..+-
T Consensus 28 Lt~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l 63 (95)
T 3c57_A 28 LTDQERTLLGL-L-SEGLTNKQIADRMFLAEKTVKNYV 63 (95)
T ss_dssp CCHHHHHHHHH-H-HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34444445544 3 899999999999999999998764
No 416
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=78.91 E-value=2 Score=27.89 Aligned_cols=23 Identities=13% Similarity=0.162 Sum_probs=20.4
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~ 65 (174)
...+|..|||+.+|+|+++||+.
T Consensus 34 ~~~~~~~ela~~l~is~~tvs~~ 56 (102)
T 3pqk_A 34 EGEFSVGELEQQIGIGQPTLSQQ 56 (102)
T ss_dssp TCCBCHHHHHHHHTCCTTHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHH
Confidence 46699999999999999999873
No 417
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=78.58 E-value=0.99 Score=30.77 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-|..+...-++|+.+||+.+|+++++|++.
T Consensus 41 ~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~ 71 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVTELALDTGTVSPL 71 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHHHTTCCTTTHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhHHHH
Confidence 3455555556788888888888888777764
No 418
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=78.57 E-value=3.9 Score=28.07 Aligned_cols=25 Identities=4% Similarity=0.215 Sum_probs=22.3
Q ss_pred hcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 133 AKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 133 ~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
..|+|+.++|+.+|+|..||+++-+
T Consensus 73 ~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 73 KQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4789999999999999999988754
No 419
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=78.56 E-value=3.4 Score=29.03 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
.+....|.... ..|++..++|+.+|+++++|.+|-.
T Consensus 28 ~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 28 EVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp HHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHC
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33344444444 4789999999999999999999965
No 420
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=78.39 E-value=1.6 Score=32.36 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 36 LLMQGRQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 36 ~ik~~R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
-|..++ ...+|..|||+.+|+|+++|++.
T Consensus 25 IL~~L~-~~~~s~~eLA~~lglS~stv~~~ 53 (192)
T 1uly_A 25 ILKLLR-NKEMTISQLSEILGKTPQTIYHH 53 (192)
T ss_dssp HHHHHT-TCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHCcCHHHHHHH
Confidence 344455 56899999999999999998874
No 421
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=78.25 E-value=4.5 Score=24.01 Aligned_cols=33 Identities=9% Similarity=-0.008 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHh
Q psy6501 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 156 (174)
Q Consensus 124 ~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E 156 (174)
...|..+-...+.++.+.|+.+|++++++...-
T Consensus 21 ~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rkl 53 (63)
T 3e7l_A 21 KIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHH
Confidence 457777888889999999999999999776543
No 422
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=78.16 E-value=1.5 Score=29.24 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhCCChhHHHHHhc-CCCCC
Q psy6501 135 GWSQKDLATKINEKPQIVNDYEG-GRGIP 162 (174)
Q Consensus 135 glsq~ela~~lg~~~s~i~~~E~-G~~~P 162 (174)
+++..++|+.+|+++.++..||. |--.|
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gll~p 29 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGLLVP 29 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTSSCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCCCCC
Confidence 47889999999999999999987 44444
No 423
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=78.03 E-value=2.6 Score=27.97 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=22.4
Q ss_pred HHHHHHcCCCHHHHHHHh-CCCHHHHHHH
Q psy6501 38 MQGRQAKGWSQKDLATKI-NEKPQIVNDY 65 (174)
Q Consensus 38 k~~R~~~gltq~eLA~~i-gvs~~~is~~ 65 (174)
..+. .-++++.|||+.+ |+++++|+..
T Consensus 29 ~~L~-~~~~~~~eLa~~l~~is~~tvs~~ 56 (112)
T 1z7u_A 29 DELF-QGTKRNGELMRALDGITQRVLTDR 56 (112)
T ss_dssp HHHH-HSCBCHHHHHHHSTTCCHHHHHHH
T ss_pred HHHH-hCCCCHHHHHHHhccCCHHHHHHH
Confidence 3444 3689999999999 9999999875
No 424
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=77.94 E-value=3.9 Score=25.33 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=21.4
Q ss_pred HHHhcCCCHHHHHHHhCCChhHHHHH
Q psy6501 130 GRQAKGWSQKDLATKINEKPQIVNDY 155 (174)
Q Consensus 130 ~R~~~glsq~ela~~lg~~~s~i~~~ 155 (174)
......++..++|+.+|+++++++++
T Consensus 9 L~~~~~~s~~eLa~~lgvs~~tv~r~ 34 (81)
T 2htj_A 9 LNRHNGGKTAEIAEALAVTDYQARYY 34 (81)
T ss_dssp HHHSCCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 34445699999999999999988765
No 425
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=77.78 E-value=2 Score=28.65 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.5
Q ss_pred CCCHHHHHHHhCCChhHHHHHhcC
Q psy6501 135 GWSQKDLATKINEKPQIVNDYEGG 158 (174)
Q Consensus 135 glsq~ela~~lg~~~s~i~~~E~G 158 (174)
.++..++|+.+|+++.++..||.-
T Consensus 2 ~~~i~e~A~~~gvs~~tLR~ye~~ 25 (109)
T 1r8d_A 2 KYQVKQVAEISGVSIRTLHHYDNI 25 (109)
T ss_dssp CBCHHHHHHHHSCCHHHHHHHHHT
T ss_pred CccHHHHHHHHCcCHHHHHHHHHC
Confidence 378899999999999999999874
No 426
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=77.61 E-value=4 Score=25.77 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHHh----cCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 119 VPLDLAKLLMQGRQA----KGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 119 ~~~~~~~~i~~~R~~----~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
++..-...+ ..|-- .|+|.+++|+.+|+++++|..+..
T Consensus 19 L~~~er~vl-~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 19 LSPREAMVL-RMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp SCHHHHHHH-HHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHH-HHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 334434444 34444 789999999999999999988764
No 427
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=77.42 E-value=2.7 Score=30.40 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCC------ChhHHHHHhcCC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINE------KPQIVNDYEGGR 159 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~------~~s~i~~~E~G~ 159 (174)
..+....+..|...|+||.+++..+|. +.++|.+.|+-.
T Consensus 16 ~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ 60 (164)
T 2xsd_C 16 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 60 (164)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccC
Confidence 556778889999999999999999888 888999999743
No 428
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=77.41 E-value=5 Score=25.40 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=23.9
Q ss_pred HHHHHHHHhc---CCCHHHHHHHhCCChhHHHHH
Q psy6501 125 KLLMQGRQAK---GWSQKDLATKINEKPQIVNDY 155 (174)
Q Consensus 125 ~~i~~~R~~~---glsq~ela~~lg~~~s~i~~~ 155 (174)
.++...++.. .++..++|+++|++..+|.+.
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~ 47 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 47 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 3444455555 699999999999999987764
No 429
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=77.34 E-value=2.5 Score=29.93 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCC------ChhHHHHHhcCC
Q psy6501 121 LDLAKLLMQGRQAKGWSQKDLATKINE------KPQIVNDYEGGR 159 (174)
Q Consensus 121 ~~~~~~i~~~R~~~glsq~ela~~lg~------~~s~i~~~E~G~ 159 (174)
..+....+..|...|++|.+++..+|. |.++|.+.|+-.
T Consensus 6 ~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ 50 (146)
T 1au7_A 6 EQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQ 50 (146)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccC
Confidence 445667788888999999999999888 888999988743
No 430
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=77.31 E-value=1.7 Score=29.03 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCHHHHHHHhC----CCHHHHHHHH
Q psy6501 36 LLMQGRQAKGWSQKDLATKIN----EKPQIVNDYE 66 (174)
Q Consensus 36 ~ik~~R~~~gltq~eLA~~ig----vs~~~is~~E 66 (174)
-|..+....++|+.+||+.++ +++++|+.+-
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l 49 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLI 49 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHH
Confidence 344455578999999999999 8899988764
No 431
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=77.29 E-value=5.3 Score=25.58 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 119 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 119 ~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
++..-.+.+... ..|++.+++|+.+|++..+|..+-.
T Consensus 30 Lt~rE~~Vl~l~--~~G~s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 30 LTPRECLILQEV--EKGFTNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp CCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344434444333 3899999999999999999887643
No 432
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=76.95 E-value=2.1 Score=28.91 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHh--CCCHHHHHHH
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKI--NEKPQIVNDY 65 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~i--gvs~~~is~~ 65 (174)
-.-|..+++.-.+|..+||+.+ |+|+++|++.
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~r 49 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRR 49 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHH
Confidence 3345566666899999999999 9999999874
No 433
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=76.39 E-value=1.8 Score=29.07 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=21.0
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
...+|..|||+.+|+|+++|++.-
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L 55 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHL 55 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 456899999999999999999854
No 434
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=76.17 E-value=1.7 Score=32.43 Aligned_cols=39 Identities=8% Similarity=0.029 Sum_probs=28.1
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHHc------------CC-CCCCHHHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKP-QIVNDYEG------------GR-GIPNQAIIGKMERA 83 (174)
Q Consensus 45 gltq~eLA~~igvs~-~~is~~E~------------G~-~~P~~~~l~~la~~ 83 (174)
.+||++||..+|+|+ .+||+.-+ |+ ...+.+.|.+++..
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I~d~~~L~~~~~~ 221 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPK 221 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHCHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHhcC
Confidence 689999999999999 58887531 11 33566666666653
No 435
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=76.15 E-value=22 Score=27.78 Aligned_cols=92 Identities=11% Similarity=0.053 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC-------CCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccccCCCCCCCCCccc
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKIN-------EKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVNAGTNKQPGTTKNT 104 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~ig-------vs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l~~~~~~~~~~~~~ 104 (174)
.+-..|..+ -..|.|..+.|+.++ +|++||.+|-+- +.+ |. ..+..... .. .+
T Consensus 10 ~~R~~i~~~-~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r-----------~~~--g~--~~l~~~~r-~g-rp-- 69 (345)
T 3hot_A 10 QTRTVLIFC-FHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQR-----------FKS--GD--FDVDDKEH-GK-PP-- 69 (345)
T ss_dssp HHHHHHHHH-HHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHH-----------HTT--CC--CCCSCCCC-CC-CC--
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHH-----------HhC--CC--ccccCCCC-CC-CC--
Confidence 344444443 457999999999987 999999999531 110 10 01110000 00 00
Q ss_pred chhhhhhhhhhcccccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 105 AKLDRETEELKHEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
..+. ...+... ......++..+++..++++.++|.++-.
T Consensus 70 ~~~~-----------~~~i~~~---v~~~~~~t~~~ia~~l~vs~~tV~r~L~ 108 (345)
T 3hot_A 70 KRYE-----------DAELQAL---LDEDDAQTQKQLAEQLEVSQQAVSNRLR 108 (345)
T ss_dssp CSSC-----------HHHHHHH---HHHCSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred Cccc-----------HHHHHHH---HHhCccchHHHHHHHHCCCHHHHHHHHH
Confidence 0111 0112222 2456779999999999999999988754
No 436
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=76.00 E-value=2.7 Score=31.07 Aligned_cols=38 Identities=13% Similarity=-0.032 Sum_probs=28.1
Q ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH
Q psy6501 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQ 74 (174)
Q Consensus 37 ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~~P~~ 74 (174)
+..+++..-+|-+|||+.++||..||.+=-.--..|.+
T Consensus 18 ~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l 55 (190)
T 4a0z_A 18 RQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPEL 55 (190)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCCH
T ss_pred HHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcch
Confidence 33444455579999999999999999876555566653
No 437
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=75.94 E-value=3 Score=33.41 Aligned_cols=31 Identities=19% Similarity=0.080 Sum_probs=24.7
Q ss_pred HHHHHHHHc--CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 36 LLMQGRQAK--GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 36 ~ik~~R~~~--gltq~eLA~~igvs~~~is~~E 66 (174)
-|+.+++.. -+|-++||+.+|||+++|++.-
T Consensus 8 iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i 40 (323)
T 3rkx_A 8 VLQLLYKNKPNYISGQSIAESLNISRTAVKKVI 40 (323)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHH
Confidence 455555554 4899999999999999998763
No 438
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=75.81 E-value=2.8 Score=28.43 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=20.5
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
.++|..+||+.+|+|+++||+.-
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L 80 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQL 80 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHH
Confidence 46899999999999999999754
No 439
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=75.65 E-value=5.7 Score=26.99 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHcCC-------CHHHHHHHhCCCHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQAKGW-------SQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gl-------tq~eLA~~igvs~~~is~~ 65 (174)
+...+.+.|+..-....+ |..+||+.+|||+.+|..-
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~A 57 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 345566666666554444 7999999999999998754
No 440
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=75.64 E-value=3.6 Score=30.33 Aligned_cols=36 Identities=8% Similarity=0.059 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHc----CCCHHHHHHHhCCCHHHHHHH
Q psy6501 30 PLDLAKLLMQGRQAK----GWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~----gltq~eLA~~igvs~~~is~~ 65 (174)
...|-+.-..+-.+. ++|..++|+++|||+.+|..+
T Consensus 7 r~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY~~ 46 (220)
T 1z0x_A 7 KDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWY 46 (220)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHHHh
Confidence 334444444444455 579999999999999999876
No 441
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=75.59 E-value=1.9 Score=30.77 Aligned_cols=44 Identities=7% Similarity=-0.108 Sum_probs=34.3
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcccccc
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVN 91 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~~la~~L~v~~~~l 91 (174)
.=+|..|+|+.+|||.++|.++-+....|.... -..+.|+..+|
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~G~L~AVr~----Gr~~rVP~~f~ 73 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR----AGGVVIPQVFF 73 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHTTSCCCEEE----TTEEEEEGGGB
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHCCCceEEEE----CCEEEecHHHh
Confidence 457999999999999999999998888777553 24555555554
No 442
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=75.59 E-value=3.7 Score=31.35 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 29 VPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 29 ~~~~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E 66 (174)
+...--+.+.. + ..|+|.+|+|+.+|+|.+||...-
T Consensus 198 L~~~erevl~L-~-~~G~s~~EIA~~L~iS~~TVk~~l 233 (258)
T 3clo_A 198 LSEREKEILRC-I-RKGLSSKEIAATLYISVNTVNRHR 233 (258)
T ss_dssp SCHHHHHHHHH-H-HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34444444444 4 699999999999999999987664
No 443
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=75.54 E-value=2.1 Score=28.18 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=20.5
Q ss_pred HcCCCHHHHHHHh-CCCHHHHHHH
Q psy6501 43 AKGWSQKDLATKI-NEKPQIVNDY 65 (174)
Q Consensus 43 ~~gltq~eLA~~i-gvs~~~is~~ 65 (174)
.-.+++.|||+.+ |+|+++++..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~ 48 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQ 48 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHH
Confidence 4569999999999 9999999874
No 444
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=75.46 E-value=6.4 Score=27.32 Aligned_cols=37 Identities=11% Similarity=-0.036 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHhCCCHHHHHHHHc
Q psy6501 31 LDLAKLLMQGRQAKG---WSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 31 ~~ig~~ik~~R~~~g---ltq~eLA~~igvs~~~is~~E~ 67 (174)
..|-+....+-.+.| +|..++|+++|||++++..|=.
T Consensus 12 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 51 (195)
T 3ppb_A 12 QAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFP 51 (195)
T ss_dssp HHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 344444445545555 6999999999999999998843
No 445
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=75.44 E-value=3.1 Score=29.16 Aligned_cols=23 Identities=4% Similarity=-0.065 Sum_probs=20.4
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~ 65 (174)
.-.+++.|||+.+|+|++++++.
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~ 57 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAAR 57 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHH
Confidence 45699999999999999999874
No 446
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=75.30 E-value=5.4 Score=24.73 Aligned_cols=37 Identities=11% Similarity=-0.079 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCC
Q psy6501 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR 69 (174)
Q Consensus 32 ~ig~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~ 69 (174)
.+-..|..+|... ||....|...||..+||..--+|+
T Consensus 18 ~L~~Ai~aVr~g~-mS~~~Aak~yGVP~sTL~~RVk~~ 54 (70)
T 2cob_A 18 ILEEAISVVMSGK-MSVSKAQSIYGIPHSTLEYKVKER 54 (70)
T ss_dssp HHHHHHHHHHTTS-SCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-ccHHHHHHHhCCChHHHHHHHHhh
Confidence 5677888887755 999999999999999998765544
No 447
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=75.28 E-value=0.73 Score=27.94 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=23.6
Q ss_pred CCHHHHHHHhCCChhHHHHHhcCCCCCC
Q psy6501 136 WSQKDLATKINEKPQIVNDYEGGRGIPN 163 (174)
Q Consensus 136 lsq~ela~~lg~~~s~i~~~E~G~~~P~ 163 (174)
++.+++++.+|++.+++.+|.+-...|.
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g~fP~ 38 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSGDLPK 38 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHHHCCC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCCCCC
Confidence 6889999999999999988887555554
No 448
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=75.11 E-value=6.5 Score=26.17 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHH-hCCChhHHHHHhcC
Q psy6501 120 PLDLAKLLMQGRQAKGWSQKDLATK-INEKPQIVNDYEGG 158 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~glsq~ela~~-lg~~~s~i~~~E~G 158 (174)
...+...|+++.+..+.+|..||+. +|.++.+++++-+-
T Consensus 19 Tk~I~~~ike~L~~~~isQ~~FA~~VLgrsQgtlS~lL~~ 58 (101)
T 1x2l_A 19 TAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILAR 58 (101)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHccccchHHHHhcC
Confidence 4567788999999999999999998 89999999988763
No 449
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=75.03 E-value=5.4 Score=27.61 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcC---CCHHHHHHHhCCCHHHHHHHH
Q psy6501 32 DLAKLLMQGRQAKG---WSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 32 ~ig~~ik~~R~~~g---ltq~eLA~~igvs~~~is~~E 66 (174)
.|-+....+-.++| .|..++|+++|||++++..+=
T Consensus 12 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 49 (188)
T 3qkx_A 12 QIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYF 49 (188)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHHc
Confidence 34444455555565 799999999999999998873
No 450
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=75.02 E-value=5.7 Score=25.23 Aligned_cols=33 Identities=6% Similarity=-0.006 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHh
Q psy6501 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 156 (174)
Q Consensus 124 ~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E 156 (174)
...|.++-...+.++.+.|+.+|++++++.+.-
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKL 75 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRIL 75 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHH
Confidence 456777778889999999999999999876543
No 451
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=74.94 E-value=4.1 Score=28.47 Aligned_cols=24 Identities=0% Similarity=-0.175 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~ 67 (174)
.++|..++|+++|||++++.++=.
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~F~ 44 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYHFK 44 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTS
T ss_pred ccCCHHHHHHHhCCCchhHHHhCC
Confidence 457999999999999999998743
No 452
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=74.92 E-value=6 Score=28.10 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHcC---CCHHHHHHHhCCCHHHHHHHH
Q psy6501 30 PLDLAKLLMQGRQAKG---WSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~g---ltq~eLA~~igvs~~~is~~E 66 (174)
...|-+....+-.+.| +|..++|+.+|||++++.++=
T Consensus 33 r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 72 (218)
T 3dcf_A 33 RTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYF 72 (218)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHc
Confidence 4455555556666666 699999999999999999873
No 453
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=74.90 E-value=0.83 Score=31.89 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=18.9
Q ss_pred HHHHH-HHHcCCCHHHHHHHhCCCHHHHHHH
Q psy6501 36 LLMQG-RQAKGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 36 ~ik~~-R~~~gltq~eLA~~igvs~~~is~~ 65 (174)
-|..+ ....++|+.+||+.+|+++++|++.
T Consensus 52 iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~ 82 (160)
T 3boq_A 52 AMAQLARNPDGLSMGKLSGALKVTNGNVSGL 82 (160)
T ss_dssp HHHHHHHCTTCEEHHHHHHHCSSCCSCHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCChhhHHHH
Confidence 34444 3445677777777777777766654
No 454
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=74.76 E-value=2.5 Score=29.96 Aligned_cols=35 Identities=14% Similarity=0.030 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcC---CCHHHHHHHhCCCHHHHHHHHc
Q psy6501 33 LAKLLMQGRQAKG---WSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 33 ig~~ik~~R~~~g---ltq~eLA~~igvs~~~is~~E~ 67 (174)
|-+....+-.++| .|..++|+++|||++++..+=.
T Consensus 17 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (202)
T 3lwj_A 17 ILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFV 54 (202)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHCS
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHHcC
Confidence 3333444444445 6999999999999999998733
No 455
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=74.74 E-value=2 Score=30.23 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=17.9
Q ss_pred HHHHHHHHH--cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 35 KLLMQGRQA--KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 35 ~~ik~~R~~--~gltq~eLA~~igvs~~~is~~ 65 (174)
..|..+... .++|+.+||+.+++++++|+..
T Consensus 50 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~ 82 (168)
T 3u2r_A 50 NTLRLLRSVHPEGMATLQIADRLISRAPDITRL 82 (168)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHC---CTHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHH
Confidence 344445443 4777777777777777777764
No 456
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=74.50 E-value=2.6 Score=28.79 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.4
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
...+|.+++|..+|+|+++++++=
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~F 114 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLF 114 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 567999999999999999999864
No 457
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=74.27 E-value=6.5 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHcCC-------CHHHHHHHhCCCHHHHHHH
Q psy6501 30 PLDLAKLLMQGRQAKGW-------SQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 30 ~~~ig~~ik~~R~~~gl-------tq~eLA~~igvs~~~is~~ 65 (174)
...+.+.|+..-....+ |..+||+.+|||+.+|..-
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~A 55 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKA 55 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 44566666665544433 9999999999999988764
No 458
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=74.12 E-value=2.3 Score=29.34 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcC---CCHHHHHHHhCCCHHHHHHHH
Q psy6501 33 LAKLLMQGRQAKG---WSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 33 ig~~ik~~R~~~g---ltq~eLA~~igvs~~~is~~E 66 (174)
|-+...++=.++| .|..++|+++|||++++..+=
T Consensus 9 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 45 (170)
T 3egq_A 9 IIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHF 45 (170)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHHc
Confidence 3333344444555 699999999999999999883
No 459
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=73.99 E-value=5.9 Score=28.01 Aligned_cols=37 Identities=5% Similarity=-0.058 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCC
Q psy6501 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG 70 (174)
Q Consensus 34 g~~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~ 70 (174)
-+.+..+-...|.+..++|+.+|+|+.|+.++-+...
T Consensus 145 ~~~~~~~~~~~~~~~~~ia~~l~is~~tv~~~l~~~~ 181 (184)
T 3rqi_A 145 WEHIQRVLAENNNNISATARALNMHRRTLQRKLAKKP 181 (184)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHCC--
T ss_pred HHHHHHHHHhccccHHHHHHHcCCcHHHHHHHHHhcC
Confidence 3456667778899999999999999999999876543
No 460
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=73.98 E-value=2.6 Score=29.92 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcC---CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH
Q psy6501 32 DLAKLLMQGRQAKG---WSQKDLATKINEKPQIVNDYEGGRGIPNQAIIG 78 (174)
Q Consensus 32 ~ig~~ik~~R~~~g---ltq~eLA~~igvs~~~is~~E~G~~~P~~~~l~ 78 (174)
.|-+.-.++=.++| .|..++|+++|||++||..| .|+.+.|.
T Consensus 16 ~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~-----F~sKe~L~ 60 (192)
T 2fq4_A 16 AILSASYELLLESGFKAVTVDKIAERAKVSKATIYKW-----WPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH-----CSSHHHHH
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHH-----CCCHHHHH
Confidence 34444444444555 69999999999999999987 55666554
No 461
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=73.70 E-value=6.2 Score=27.93 Aligned_cols=34 Identities=6% Similarity=0.097 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCC---CHHHHHHHhCCCHHHHHHH
Q psy6501 32 DLAKLLMQGRQAKGW---SQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 32 ~ig~~ik~~R~~~gl---tq~eLA~~igvs~~~is~~ 65 (174)
.|-+....+-.++|+ |..++|+++|||++++..+
T Consensus 16 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 16 RVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp HHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHH
Confidence 344444445555555 9999999999999999877
No 462
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=73.67 E-value=7.7 Score=32.51 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=22.4
Q ss_pred cCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 134 KGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 134 ~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
.++|.+++|+.+|++..+|..+++
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~ 417 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIEN 417 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 689999999999999999998876
No 463
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=73.60 E-value=6.3 Score=27.03 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCC-------CHHHHHHHhCCCHHHHHHH
Q psy6501 31 LDLAKLLMQGRQAKGW-------SQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 31 ~~ig~~ik~~R~~~gl-------tq~eLA~~igvs~~~is~~ 65 (174)
..+.+.|+..-....+ |..+||+.+|||+++|..-
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~A 48 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNG 48 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 3455555554444333 8999999999999988753
No 464
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=73.51 E-value=0.69 Score=33.98 Aligned_cols=24 Identities=4% Similarity=-0.097 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~ 67 (174)
..+||++||..+|+|+.+||+.-+
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~ 186 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALSRVFQ 186 (213)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 468999999999999999998754
No 465
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=73.45 E-value=6 Score=26.54 Aligned_cols=29 Identities=21% Similarity=0.144 Sum_probs=24.2
Q ss_pred HHHHhcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 129 QGRQAKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 129 ~~R~~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
..+-..|+|.+++|+.+|+++++|..+-+
T Consensus 32 ~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ 60 (113)
T 1s7o_A 32 ELYYADDYSLAEIADEFGVSRQAVYDNIK 60 (113)
T ss_dssp HHHHHTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44556899999999999999999887643
No 466
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=73.39 E-value=2.8 Score=30.29 Aligned_cols=26 Identities=23% Similarity=0.104 Sum_probs=23.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCC
Q psy6501 46 WSQKDLATKINEKPQIVNDYEGGRGI 71 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~~E~G~~~ 71 (174)
-|+.|+|+.+|++.++|+++-+|++.
T Consensus 136 ~s~~eAa~~~Gvs~~tIs~~~~gk~k 161 (174)
T 1u3e_M 136 PSTKCACEELGLTRGKVTDVLKGHRI 161 (174)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHCcCHhHhHHHHcCCCC
Confidence 48999999999999999999999764
No 467
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=73.07 E-value=2.2 Score=32.09 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=19.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~ 65 (174)
++|+.++|+.+++|+++||+.
T Consensus 27 ~~s~s~aA~~L~isq~avSr~ 47 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRI 47 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHH
Confidence 588999999999999999986
No 468
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=73.05 E-value=2.8 Score=29.86 Aligned_cols=22 Identities=9% Similarity=-0.138 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
++|..++|+++|||++++..|=
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F 55 (220)
T 3lhq_A 34 ATSLAEIANAAGVTRGAIYWHF 55 (220)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHC
T ss_pred cCCHHHHHHHhCCCceeehhhc
Confidence 4699999999999999999883
No 469
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=73.00 E-value=7.4 Score=27.26 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.5
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
.+.|..++|+++|||+++|..+=
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F 48 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYHY 48 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHT
T ss_pred ccCCHHHHHHHhCCChHHHHHHC
Confidence 35799999999999999999874
No 470
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=72.80 E-value=5.3 Score=31.53 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHh
Q psy6501 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 156 (174)
Q Consensus 124 ~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E 156 (174)
...+.......+++|.++|+.+|+|+.+|++.-
T Consensus 10 ~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL 42 (315)
T 2w48_A 10 IVKIAQLYYEQDMTQAQIARELGIYRTTISRLL 42 (315)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 355666677788999999999999999998763
No 471
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=72.78 E-value=2.6 Score=29.44 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=20.1
Q ss_pred cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~ 65 (174)
.++|..++|+.+|||++++..|
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~ 48 (194)
T 2g7s_A 27 NSFSYADISQVVGIRNASIHHH 48 (194)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchHHHHH
Confidence 4579999999999999999987
No 472
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=72.77 E-value=5.8 Score=26.70 Aligned_cols=41 Identities=10% Similarity=0.176 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHhcC-CCHHHHHHHhCCChhHHHHHhcCCC
Q psy6501 120 PLDLAKLLMQGRQAKG-WSQKDLATKINEKPQIVNDYEGGRG 160 (174)
Q Consensus 120 ~~~~~~~i~~~R~~~g-lsq~ela~~lg~~~s~i~~~E~G~~ 160 (174)
+.+....+...-...| .++.++|+.+|+++++|++|-++..
T Consensus 9 t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~ 50 (131)
T 1hlv_A 9 TFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR 50 (131)
T ss_dssp CHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchh
Confidence 3333333333332345 5566999999999999999987643
No 473
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=72.73 E-value=3.1 Score=31.48 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=21.8
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
..|+|.+|+|+.+|+|..||...-
T Consensus 188 ~~G~s~~eIa~~l~is~~tV~~~~ 211 (237)
T 3szt_A 188 AVGKTYGEIGLILSIDQRTVKFHI 211 (237)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHH
Confidence 579999999999999999998764
No 474
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=72.67 E-value=0.74 Score=34.16 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 39 QGRQAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 39 ~~R~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
.+|.-.|+|.+|+|+.+|+|.++|.++..
T Consensus 208 ~l~~~~g~s~~EIA~~lgis~~tV~~~~~ 236 (243)
T 1l0o_C 208 YLRYYKDQTQSEVASRLGISQVQMSRLEK 236 (243)
T ss_dssp -----------------------------
T ss_pred HHHHhcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34566899999999999999999988754
No 475
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=72.66 E-value=3 Score=27.31 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.7
Q ss_pred CCHHHHHHHhCCChhHHHHHhc
Q psy6501 136 WSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 136 lsq~ela~~lg~~~s~i~~~E~ 157 (174)
.+..++|..+|+++++|..|-.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHH
Confidence 7899999999999999988854
No 476
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=72.53 E-value=4.4 Score=29.66 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=19.6
Q ss_pred cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~ 65 (174)
.+.|..++|+++|||++++..|
T Consensus 49 ~~~t~~~IA~~Agvs~~t~Y~~ 70 (230)
T 2iai_A 49 DGTSMEHLSKAAGISKSSIYHH 70 (230)
T ss_dssp TTCCHHHHHHHHTSCHHHHTTT
T ss_pred cccCHHHHHHHHCCChhHHHHh
Confidence 4579999999999999999865
No 477
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=72.53 E-value=6.4 Score=28.51 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=20.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
++|..++|+++|||++++.++=
T Consensus 25 ~~t~~~IA~~Agvs~~t~Y~~F 46 (228)
T 3nnr_A 25 NITTNHIAAHLAISPGNLYYHF 46 (228)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHC
T ss_pred hcCHHHHHHHhCCCCccchhcC
Confidence 4799999999999999999873
No 478
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=72.45 E-value=5.1 Score=30.07 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.3
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
..|+|.+|+|+.+|+|.+||..+-.
T Consensus 188 ~~g~s~~eIa~~l~is~~tV~~~~~ 212 (236)
T 2q0o_A 188 SKGKTASVTANLTGINARTVQHYLD 212 (236)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5899999999999999999987653
No 479
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=72.44 E-value=3 Score=29.72 Aligned_cols=22 Identities=9% Similarity=0.071 Sum_probs=20.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
+.|..++|+.+|||+++|..|=
T Consensus 34 ~~ti~~IA~~agvs~~t~Y~~F 55 (212)
T 3knw_A 34 GVGLQEILKTSGVPKGSFYHYF 55 (212)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHC
T ss_pred cCCHHHHHHHhCCChHHHHHHC
Confidence 5799999999999999999873
No 480
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=72.39 E-value=3 Score=29.22 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=21.7
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
.+.|..++|+.+|||++++..|=
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F 53 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYY 53 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHc
Confidence 89999999999999999999883
No 481
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=72.30 E-value=3 Score=29.39 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=20.3
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
.+.|..++|+++|||+++|..+=
T Consensus 22 ~~~s~~~IA~~agvsk~t~Y~~F 44 (190)
T 3vpr_A 22 EATSVQDLAQALGLSKAALYHHF 44 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHc
Confidence 45699999999999999999874
No 482
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=72.15 E-value=7.1 Score=27.87 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcC---CCHHHHHHHhCCCHHHHHHHHcCC
Q psy6501 32 DLAKLLMQGRQAKG---WSQKDLATKINEKPQIVNDYEGGR 69 (174)
Q Consensus 32 ~ig~~ik~~R~~~g---ltq~eLA~~igvs~~~is~~E~G~ 69 (174)
.|-+.-.++=.++| .|..++|+++|||+++|..|=.++
T Consensus 12 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~F~sK 52 (202)
T 2d6y_A 12 RIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNK 52 (202)
T ss_dssp HHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 33333344444454 699999999999999999885443
No 483
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=72.13 E-value=3.1 Score=29.36 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHhCCCHHHHHHHH
Q psy6501 31 LDLAKLLMQGRQAKG---WSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 31 ~~ig~~ik~~R~~~g---ltq~eLA~~igvs~~~is~~E 66 (174)
..|-+.-..+=.+.| +|..++|+.+|||+++|..|=
T Consensus 20 ~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F 58 (206)
T 3kz9_A 20 QQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYF 58 (206)
T ss_dssp HHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHc
Confidence 344445555555666 689999999999999999883
No 484
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=71.99 E-value=3 Score=31.17 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.1
Q ss_pred HcCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 43 AKGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 43 ~~gltq~eLA~~igvs~~~is~~E 66 (174)
..++|+.+||+.+|+|++++++.-
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l 41 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMM 41 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhHHHHHH
Confidence 456999999999999999998764
No 485
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=71.99 E-value=5.8 Score=27.87 Aligned_cols=22 Identities=5% Similarity=0.151 Sum_probs=20.4
Q ss_pred cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~ 65 (174)
.++|..++|+.+|||++++..|
T Consensus 36 ~~~ti~~Ia~~agvs~~t~Y~~ 57 (208)
T 3cwr_A 36 AAMTMEGVASEAGIAKKTLYRF 57 (208)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHhCCCHHHHHHH
Confidence 4679999999999999999988
No 486
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=71.84 E-value=4 Score=31.06 Aligned_cols=30 Identities=20% Similarity=0.056 Sum_probs=23.3
Q ss_pred HHHHHHH-cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 37 LMQGRQA-KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 37 ik~~R~~-~gltq~eLA~~igvs~~~is~~E 66 (174)
|..+... .++|..|||+.+|++++|++++-
T Consensus 14 L~~l~~~~~~~~~~ela~~~gl~~stv~r~l 44 (249)
T 1mkm_A 14 LDFIVKNPGDVSVSEIAEKFNMSVSNAYKYM 44 (249)
T ss_dssp HHHHHHCSSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3334333 36999999999999999999863
No 487
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=71.84 E-value=5.6 Score=27.89 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHc---CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 33 LAKLLMQGRQAK---GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 33 ig~~ik~~R~~~---gltq~eLA~~igvs~~~is~~E 66 (174)
|-+...++-.+. ++|..++|+.+|||++++..+=
T Consensus 19 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 55 (203)
T 3f1b_A 19 MLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYY 55 (203)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHC
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHHh
Confidence 333444444444 5699999999999999999873
No 488
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=71.82 E-value=3.7 Score=29.50 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=20.2
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E 66 (174)
.+.|..++|+.+|||+++|..+=
T Consensus 31 ~~ts~~~IA~~aGvsk~tlY~~F 53 (211)
T 3bhq_A 31 DGTSMEEIATKAGASKQTVYKHF 53 (211)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHc
Confidence 45799999999999999998774
No 489
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=71.46 E-value=2.5 Score=29.19 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcC---CCHHHHHHHhCCCHHHHHHHHcC
Q psy6501 33 LAKLLMQGRQAKG---WSQKDLATKINEKPQIVNDYEGG 68 (174)
Q Consensus 33 ig~~ik~~R~~~g---ltq~eLA~~igvs~~~is~~E~G 68 (174)
|-+...++-.++| .|..++|+.+|||+++|..+=.+
T Consensus 19 Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (156)
T 3ljl_A 19 IMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFPK 57 (156)
T ss_dssp HHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHHHCCC
Confidence 3334444444444 69999999999999999988433
No 490
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=71.45 E-value=6.8 Score=27.07 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=23.0
Q ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Q psy6501 42 QAKGWSQKDLATKINEKPQIVNDYEG 67 (174)
Q Consensus 42 ~~~gltq~eLA~~igvs~~~is~~E~ 67 (174)
+-.|.+..+||++.|+|..+|.++-+
T Consensus 89 ~f~G~n~~eLArkYgLSer~I~~Ii~ 114 (129)
T 1rr7_A 89 DFNGRNVSELTTRYGVTFNTVYKAIR 114 (129)
T ss_dssp HCCSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 34589999999999999999999874
No 491
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=71.37 E-value=6.8 Score=26.79 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHHHHhcCCCHHHHHHHhCCChhHHHHHh
Q psy6501 118 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 156 (174)
Q Consensus 118 ~~~~~~~~~i~~~R~~~glsq~ela~~lg~~~s~i~~~E 156 (174)
.++......+. +-..|+|.+++|+.+|+++++|...-
T Consensus 109 ~L~~~~r~v~~--~~~~g~s~~EIA~~lgis~~tV~~~~ 145 (164)
T 3mzy_A 109 NFSKFEKEVLT--YLIRGYSYREIATILSKNLKSIDNTI 145 (164)
T ss_dssp HSCHHHHHHHH--HHTTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred hCCHHHHHHHH--HHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 34455555665 56799999999999999999987654
No 492
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=71.36 E-value=3.4 Score=26.73 Aligned_cols=31 Identities=6% Similarity=0.103 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHhCCChhHHHHH
Q psy6501 125 KLLMQGRQAKGWSQKDLATKINEKPQIVNDY 155 (174)
Q Consensus 125 ~~i~~~R~~~glsq~ela~~lg~~~s~i~~~ 155 (174)
.++...++....+..++|+.+++++.+|.+.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrD 36 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAM 36 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHH
Confidence 3444446666699999999999999988653
No 493
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=71.31 E-value=2.3 Score=26.31 Aligned_cols=25 Identities=0% Similarity=-0.086 Sum_probs=21.4
Q ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Q psy6501 44 KGWSQKDLATKINEKPQIVNDYEGG 68 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~E~G 68 (174)
.-||.+|.|+.+||+++++.++=+.
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 4579999999999999999888644
No 494
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=71.28 E-value=3.5 Score=28.81 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=19.9
Q ss_pred cCCCHHHHHHHhCCCHHHHHHH
Q psy6501 44 KGWSQKDLATKINEKPQIVNDY 65 (174)
Q Consensus 44 ~gltq~eLA~~igvs~~~is~~ 65 (174)
.+.|..++|+++|||++++..+
T Consensus 21 ~~~s~~~Ia~~agvskgtlY~~ 42 (179)
T 2eh3_A 21 QGTSVEEIVKRANLSKGAFYFH 42 (179)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcHHHHHH
Confidence 3569999999999999999988
No 495
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=71.25 E-value=7.2 Score=23.58 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.6
Q ss_pred hcCCCHHHHHHHhCCChhHHHHHh
Q psy6501 133 AKGWSQKDLATKINEKPQIVNDYE 156 (174)
Q Consensus 133 ~~glsq~ela~~lg~~~s~i~~~E 156 (174)
..|++.+++|+.+|+++.+|..+-
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~ 52 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHR 52 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 789999999999999999887654
No 496
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=71.20 E-value=2.2 Score=30.61 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=11.8
Q ss_pred CCHHHHHHHhCCCHHHHHH
Q psy6501 46 WSQKDLATKINEKPQIVND 64 (174)
Q Consensus 46 ltq~eLA~~igvs~~~is~ 64 (174)
+|+.+||+.+++++++|++
T Consensus 87 ~t~~eLa~~l~is~~tvs~ 105 (181)
T 2fbk_A 87 LRPTELSALAAISGPSTSN 105 (181)
T ss_dssp BCHHHHHHHCSCCSGGGSS
T ss_pred CCHHHHHHHHCCCHHHHHH
Confidence 6666666666666665544
No 497
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=71.13 E-value=9.4 Score=25.65 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=22.1
Q ss_pred hcCCCHHHHHHHhCCChhHHHHHhc
Q psy6501 133 AKGWSQKDLATKINEKPQIVNDYEG 157 (174)
Q Consensus 133 ~~glsq~ela~~lg~~~s~i~~~E~ 157 (174)
..|+|+.++++.+|.|.++|+++-+
T Consensus 56 ~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 56 TDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCccHHHHHHHHH
Confidence 4789999999999999999988644
No 498
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=71.04 E-value=0.85 Score=33.50 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCC
Q psy6501 36 LLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRG 70 (174)
Q Consensus 36 ~ik~~R~~~gltq~eLA~~igvs~~~is~~E~G~~ 70 (174)
.|..++ ..|+|..++|+.+|||++|+.+|-+...
T Consensus 150 ~i~~l~-~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~ 183 (193)
T 3uj3_X 150 QAGRLL-AQGIPRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp -----------------------------------
T ss_pred HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 344444 3689999999999999999999987554
No 499
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=70.96 E-value=6.9 Score=26.15 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=24.4
Q ss_pred HHHHHHhcCCCHHHHHHHhCCChhHHHHHh
Q psy6501 127 LMQGRQAKGWSQKDLATKINEKPQIVNDYE 156 (174)
Q Consensus 127 i~~~R~~~glsq~ela~~lg~~~s~i~~~E 156 (174)
+-..+-..|+|.+++|+.+|+++++|..+-
T Consensus 33 vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l 62 (113)
T 1xsv_A 33 YLELFYLEDYSLSEIADTFNVSRQAVYDNI 62 (113)
T ss_dssp HHHHHHTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 334555789999999999999999987653
No 500
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=70.79 E-value=6.4 Score=27.54 Aligned_cols=22 Identities=9% Similarity=-0.176 Sum_probs=20.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q psy6501 45 GWSQKDLATKINEKPQIVNDYE 66 (174)
Q Consensus 45 gltq~eLA~~igvs~~~is~~E 66 (174)
++|..++|+++|||+++|..|=
T Consensus 28 ~~t~~~IA~~Agvs~~tly~~F 49 (194)
T 3dpj_A 28 QTSFVDISAAVGISRGNFYYHF 49 (194)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHC
T ss_pred cCCHHHHHHHHCCChHHHHHHc
Confidence 5699999999999999999883
Done!