RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6501
(174 letters)
>gnl|CDD|224726 COG1813, COG1813, Predicted transcription factor, homolog of
eukaryotic MBF1 [Transcription].
Length = 165
Score = 66.7 bits (163), Expect = 2e-14
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLRVN 91
D + + + R+ +G SQ+DLA K+ EK ++ E G PN + K+E+ LGI+L
Sbjct: 79 DYGERIREAREKRGLSQEDLAAKLKEKVSVIRRIERGEATPNIKVAKKLEKLLGIKLVEK 138
Query: 92 AGTNKQ 97
++
Sbjct: 139 VDEEEE 144
Score = 59.4 bits (144), Expect = 1e-11
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
D + + + R+ +G SQ+DLA K+ EK ++ E G PN + K+E+ L
Sbjct: 79 DYGERIREAREKRGLSQEDLAAKLKEKVSVIRRIERGEATPNIKVAKKLEKLL 131
>gnl|CDD|201759 pfam01381, HTH_3, Helix-turn-helix. This large family of DNA
binding helix-turn helix proteins includes Cro and CI.
Within the Neisseria gonorrhoeae phage associated
protein NGO0477, the full protein fold incorporates a
helix-turn-helix motif, but the function of this member
is unlikely to be that of a DNA-binding regulator, the
function of most other members, so is not necessarily
characteristic of the whole family.
Length = 55
Score = 48.3 bits (116), Expect = 2e-08
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLR 89
L + R+ G SQ++LA K+ ++ E G+ P+ + K+ ALG+ L
Sbjct: 1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREPSLETLKKLAEALGVSLD 53
Score = 44.4 bits (106), Expect = 5e-07
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 127 LMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
L + R+ G SQ++LA K+ ++ E G+ P+ + K+ AL
Sbjct: 1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREPSLETLKKLAEAL 48
>gnl|CDD|197775 smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.
Length = 56
Score = 47.9 bits (115), Expect = 2e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLR 89
L + R+ KG +Q++LA K+ ++ E G+ P+ + K+ +ALG+ L
Sbjct: 2 LKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKALGVSLD 54
Score = 44.8 bits (107), Expect = 4e-07
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 127 LMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
L + R+ KG +Q++LA K+ ++ E G+ P+ + K+ +AL
Sbjct: 2 LKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKPSLETLKKLAKAL 49
>gnl|CDD|238045 cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators.
Length = 58
Score = 44.5 bits (106), Expect = 4e-07
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 34 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
+ L + R+ KG +Q++LA K+ ++ E G+ P+ + K+ +ALG+ L
Sbjct: 1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKALGVSL 55
Score = 41.8 bits (99), Expect = 5e-06
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 124 AKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
+ L + R+ KG +Q++LA K+ ++ E G+ P+ + K+ +AL
Sbjct: 1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNPSLETLEKLAKAL 51
>gnl|CDD|117100 pfam08523, MBF1, Multiprotein bridging factor 1. This domain is
found in the multiprotein bridging factor 1 (MBF1)
which forms a heterodimer with MBF2. It has been shown
to make direct contact with the TATA-box binding
protein (TBP) and interacts with Ftz-F1, stabilising
the Ftz-F1-DNA complex. It is also found in the
endothelial differentiation-related factor (EDF-1).
Human EDF-1 is involved in the repression of
endothelial differentiation, interacts with CaM and is
phosphorylated by PKC. The domain is found in a wide
range of eukaryotic proteins including metazoans, fungi
and plants. A helix-turn-helix motif (pfam01381) is
found to its C-terminus.
Length = 70
Score = 44.7 bits (106), Expect = 6e-07
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 1 NAGTNKQPGTTKNTAKLDRETEELKHEKV 29
AG NKQ G +N AKLDRETE LK ++V
Sbjct: 42 AAGNNKQAGEGQNLAKLDRETEPLKPKRV 70
Score = 44.7 bits (106), Expect = 6e-07
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 91 NAGTNKQPGTTKNTAKLDRETEELKHEKV 119
AG NKQ G +N AKLDRETE LK ++V
Sbjct: 42 AAGNNKQAGEGQNLAKLDRETEPLKPKRV 70
>gnl|CDD|129371 TIGR00270, TIGR00270, TIGR00270 family protein. [Hypothetical
proteins, Conserved].
Length = 154
Score = 43.7 bits (103), Expect = 7e-06
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLR 89
D ++ + R+ +GWSQ+ LA KI EK ++ E P ++ K+E+ L I+LR
Sbjct: 69 DYGIIIRREREKRGWSQEQLAKKIQEKESLIKKIENAEIEPEPKVVEKLEKLLKIKLR 126
Score = 39.1 bits (91), Expect = 3e-04
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
D ++ + R+ +GWSQ+ LA KI EK ++ E P ++ K+E+ L
Sbjct: 69 DYGIIIRREREKRGWSQEQLAKKIQEKESLIKKIENAEIEPEPKVVEKLEKLL 121
>gnl|CDD|102369 PRK06424, PRK06424, transcription factor; Provisional.
Length = 144
Score = 36.5 bits (84), Expect = 0.002
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
D A+L+ R+ SQ DLA KI E+ ++ E G +P+ K+E+ LGI L
Sbjct: 84 DYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITL 140
Score = 31.1 bits (70), Expect = 0.18
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
D A+L+ R+ SQ DLA KI E+ ++ E G +P+ K+E+ L
Sbjct: 84 DYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKIL 136
>gnl|CDD|222221 pfam13560, HTH_31, Helix-turn-helix domain. This domain is a
helix-turn-helix domain that probably binds to DNA.
Length = 63
Score = 33.7 bits (78), Expect = 0.005
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALG 85
+L L + R+ G +Q +LA ++ ++ E GR P+ A++ ++ RALG
Sbjct: 1 ELGARLRRLRERAGLTQAELAERLGVSRSTLSRIETGRRRPSPAVVERLARALG 54
Score = 31.7 bits (73), Expect = 0.030
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
+L L + R+ G +Q +LA ++ ++ E GR P+ A++ ++ RAL
Sbjct: 1 ELGARLRRLRERAGLTQAELAERLGVSRSTLSRIETGRRRPSPAVVERLARAL 53
>gnl|CDD|224623 COG1709, COG1709, Predicted transcriptional regulator
[Transcription].
Length = 241
Score = 33.8 bits (78), Expect = 0.028
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR-GIPNQAIIGKMERAL 84
D + L + R+ SQ +LA ++ P +++DYE GR P A + K AL
Sbjct: 27 DPGETLRKWREIFNVSQTELARELGVSPSVISDYESGRRKSPGIAFVKKFVEAL 80
Score = 33.8 bits (78), Expect = 0.028
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR-GIPNQAIIGKMERAL 174
D + L + R+ SQ +LA ++ P +++DYE GR P A + K AL
Sbjct: 27 DPGETLRKWREIFNVSQTELARELGVSPSVISDYESGRRKSPGIAFVKKFVEAL 80
>gnl|CDD|213767 TIGR03070, couple_hipB, transcriptional regulator, y4mF family.
Members of this family belong to a clade of
helix-turn-helix DNA-binding proteins, among the larger
family pfam01381 (HTH_3; Helix-turn-helix). Members are
similar in sequence to the HipB protein of E. coli.
Genes for members of the seed alignment for this
protein family were found to be closely linked to genes
encoding proteins related to HipA. The HibBA operon
appears to have some features in common with
toxin-antitoxin post-segregational killing systems.
Length = 58
Score = 30.7 bits (70), Expect = 0.055
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 32 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
+ L+ R+A G +Q DLA + + D E G+ + ++ ALG+ L
Sbjct: 2 QIGILVRARRKALGLTQADLADLAGVGLRFIRDLENGKPTVRLDKVLRVLDALGLEL 58
Score = 26.1 bits (58), Expect = 2.6
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 122 DLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
+ L+ R+A G +Q DLA + + D E G+ + K+ R L
Sbjct: 2 QIGILVRARRKALGLTQADLADLAGVGLRFIRDLENGKPTVR---LDKVLRVL 51
>gnl|CDD|177330 PHA01976, PHA01976, helix-turn-helix protein.
Length = 67
Score = 31.1 bits (70), Expect = 0.055
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 37 LMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
L++ R A+ WS +L+ + + ++ D+E + +PN + ++ ALG+ L
Sbjct: 7 LIKARNARAWSAPELSRRAGVRHSLIYDFEADKRLPNLKTLLRLADALGVTL 58
Score = 26.5 bits (58), Expect = 2.4
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 127 LMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPN 163
L++ R A+ WS +L+ + + ++ D+E + +PN
Sbjct: 7 LIKARNARAWSAPELSRRAGVRHSLIYDFEADKRLPN 43
>gnl|CDD|224314 COG1396, HipB, Predicted transcriptional regulators
[Transcription].
Length = 120
Score = 31.2 bits (69), Expect = 0.12
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 41 RQAKGWSQKDLATKINEKPQIVNDYE-GGRGIPNQAIIGKMERALGIRL 88
R+ KG SQ++LA ++ ++ E G P+ ++ ++ ALG+ L
Sbjct: 10 RKKKGLSQEELAERLGVSRSTISRIERGRSESPSLELLARLAAALGVSL 58
Score = 28.8 bits (63), Expect = 0.88
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 131 RQAKGWSQKDLATKINEKPQIVNDYE-GGRGIPNQAIIGKMERAL 174
R+ KG SQ++LA ++ ++ E G P+ ++ ++ AL
Sbjct: 10 RKKKGLSQEELAERLGVSRSTISRIERGRSESPSLELLARLAAAL 54
>gnl|CDD|205103 pfam12844, HTH_19, Helix-turn-helix domain. Members of this
family contains a DNA-binding helix-turn-helix domain.
Length = 64
Score = 29.1 bits (66), Expect = 0.23
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 41 RQAKGWSQKDLATKINEKPQIVNDYEGGRGIPN 73
R+AKG SQ+DLA K+ ++ E G+ P+
Sbjct: 8 REAKGLSQEDLAEKLGISKSYLSKIENGKSDPS 40
Score = 29.1 bits (66), Expect = 0.23
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 131 RQAKGWSQKDLATKINEKPQIVNDYEGGRGIPN 163
R+AKG SQ+DLA K+ ++ E G+ P+
Sbjct: 8 REAKGLSQEDLAEKLGISKSYLSKIENGKSDPS 40
>gnl|CDD|205591 pfam13413, HTH_25, Helix-turn-helix domain. This domain is a
helix-turn-helix domain that probably binds to DNA.
Length = 62
Score = 28.9 bits (66), Expect = 0.24
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 36 LLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR--GIPN----QAIIGKMERALGI 86
L + R+A+G S +D+A + +P+ + E G +P + + R LG+
Sbjct: 1 RLREAREARGLSLEDVAARTKIRPRYLEALEEGDFDALPEPVYARGYLRSYARLLGL 57
Score = 27.4 bits (62), Expect = 0.88
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 126 LLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR 159
L + R+A+G S +D+A + +P+ + E G
Sbjct: 1 RLREAREARGLSLEDVAARTKIRPRYLEALEEGD 34
>gnl|CDD|182832 PRK10911, PRK10911, oligopeptidase A; Provisional.
Length = 680
Score = 30.9 bits (70), Expect = 0.33
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 73 NQAIIGKMERALGIRLRVNAGTNKQPGTTKNTAKLDRETEELKHEKVPLDLAKLLMQGRQ 132
NQA+ +M RA R + G N G N+ ++ E L+HE LA+LL
Sbjct: 228 NQALREEMYRAYSTRAS-DQGPNA--GKWDNSEVME-EILALRHE-----LAQLL----G 274
Query: 133 AKGWSQKDLATKINEKPQIVNDY 155
+ ++ K LATK+ E PQ V D+
Sbjct: 275 FENYADKSLATKMAENPQQVLDF 297
Score = 28.2 bits (63), Expect = 2.6
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 20 ETEELKHEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDY 65
E L+HE LA+LL + ++ K LATK+ E PQ V D+
Sbjct: 261 EILALRHE-----LAQLL----GFENYADKSLATKMAENPQQVLDF 297
>gnl|CDD|224343 COG1426, COG1426, Predicted transcriptional regulator contains
Xre-like HTH domain [Function unknown].
Length = 284
Score = 30.1 bits (68), Expect = 0.45
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 31 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR--GIPN----QAIIGKMERAL 84
L + L Q R+ KG S +D+A + + + E G +P + I + L
Sbjct: 2 KTLGERLRQAREEKGLSLEDVAARTKIRKSYLRALEEGNFDKLPGPVYIRGYIRSYAKFL 61
Query: 85 GIRLRV 90
G+
Sbjct: 62 GLDEDE 67
Score = 29.4 bits (66), Expect = 0.91
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 121 LDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR 159
L + L Q R+ KG S +D+A + + + E G
Sbjct: 2 KTLGERLRQAREEKGLSLEDVAARTKIRKSYLRALEEGN 40
>gnl|CDD|182049 PRK09726, PRK09726, antitoxin HipB; Provisional.
Length = 88
Score = 28.4 bits (63), Expect = 0.61
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 30 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRLR 89
P LA + RQ GW+Q +LA KI K ++++E K+ ++L + +
Sbjct: 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMT 69
Query: 90 VNAGTNKQPGTTKNT 104
+ N P +T+
Sbjct: 70 LCDAKNASPESTEQQ 84
Score = 26.9 bits (59), Expect = 2.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 120 PLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 156
P LA + RQ GW+Q +LA KI K ++++E
Sbjct: 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFE 46
>gnl|CDD|133889 PHA00440, PHA00440, host protein H-NS-interacting protein.
Length = 98
Score = 26.7 bits (59), Expect = 2.7
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 14 TAKLDRETEELKHEKVPLDLAK 35
TAK+D ETE + E + LDLAK
Sbjct: 14 TAKMDSETEAILEEDI-LDLAK 34
Score = 26.7 bits (59), Expect = 2.7
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 104 TAKLDRETEELKHEKVPLDLAK 125
TAK+D ETE + E + LDLAK
Sbjct: 14 TAKMDSETEAILEEDI-LDLAK 34
>gnl|CDD|163542 TIGR03830, CxxCG_CxxCG_HTH, putative zinc finger/helix-turn-helix
protein, YgiT family. This model describes a family of
predicted regulatory proteins with a conserved zinc
finger/HTH architecture. The amino-terminal region
contains a novel domain, featuring two CXXC motifs and
occuring in a number of small bacterial proteins as well
as in the present family. The carboxyl-terminal region
consists of a helix-turn-helix domain, modeled by
pfam01381. The predicted function is DNA binding and
transcriptional regulation.
Length = 127
Score = 26.8 bits (60), Expect = 3.4
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 17 LDRETEELKHEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAI 76
+ + L + + R+ G SQ++ A + + YE G P++A+
Sbjct: 50 NSAALADFYRKVDGLLTPPEIRRIRKKLGLSQREAAELLGGGVNAFSRYERGEVRPSKAL 109
Score = 26.8 bits (60), Expect = 3.4
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 107 LDRETEELKHEKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAI 166
+ + L + + R+ G SQ++ A + + YE G P++A+
Sbjct: 50 NSAALADFYRKVDGLLTPPEIRRIRKKLGLSQREAAELLGGGVNAFSRYERGEVRPSKAL 109
>gnl|CDD|114760 pfam06056, Terminase_5, Putative ATPase subunit of terminase
(gpP-like). This family of proteins are annotated as
ATPase subunits of phage terminase after. Terminases
are viral proteins that are involved in packaging viral
DNA into the capsid.
Length = 58
Score = 25.8 bits (57), Expect = 4.0
Identities = 8/45 (17%), Positives = 22/45 (48%)
Query: 44 KGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
+G+ ++A ++ K + V ++ + + ++E A+ RL
Sbjct: 12 QGYRPAEIAQELGLKARTVYSWKDRDKWDDLLPVERVESAIEARL 56
>gnl|CDD|233998 TIGR02756, TraK_Ftype, type-F conjugative transfer system secretin
TraK. The TraK protein is predicted to interact with
the TraV and TraB proteins as part of the scaffold which
extends from the inner membrane, through the periplasm
to the cell envelope and through which the F-type
conjugative pilus passes. TraK is homologous to the
P-type IV secretion system protein TrbG, the Ti-type
protein VirB9 and the I-type TraN protein. The protein
is related to the secretin family especially the HrcC
subgroup of the type III secretion system. The protein
is hypothesized to oligomerize to form a ring structure
akin to other secretins.
Length = 232
Score = 26.7 bits (59), Expect = 6.1
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 27 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGI 86
E V + + + L G G+ Q I P+ + G P+ G + G
Sbjct: 135 ESVLVAVIRALRGGTLPAGFYQ------IPVTPEALQLPAGLSVRPDAVWTGNHLK--GE 186
Query: 87 RLRVNAGTNK 96
R + TN
Sbjct: 187 RFELENKTNS 196
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.130 0.364
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,602,339
Number of extensions: 768546
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 56
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (25.2 bits)